| 1 | MODULE sed |
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| 2 | !!====================================================================== |
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| 3 | !! *** sed *** |
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| 4 | !! Sediment : set sediment global variables |
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| 5 | !!====================================================================== |
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| 6 | !! History : |
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| 7 | !! ! 06-12 (C. Ethe) Orignal |
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| 8 | !!---------------------------------------------------------------------- |
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| 9 | USE par_sed |
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| 10 | USE oce_sed |
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| 11 | USE in_out_manager |
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| 12 | |
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| 13 | |
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| 14 | IMPLICIT NONE |
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| 15 | PUBLIC |
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| 16 | |
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| 17 | PUBLIC sed_alloc |
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| 18 | |
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| 19 | !! Namelist |
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| 20 | REAL(wp), PUBLIC :: reac_sil !: reactivity of silicate in [l.mol-1.s-1] |
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| 21 | REAL(wp), PUBLIC :: reac_clay !: reactivity of clay in [l.mol-1.s-1] |
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| 22 | REAL(wp), PUBLIC :: reac_ligc !: reactivity of Ligands [l.mol-1.s-1] |
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| 23 | REAL(wp), PUBLIC :: reac_pocl !: reactivity of pocl in [s-1] |
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| 24 | REAL(wp), PUBLIC :: reac_pocs !: reactivity of pocs in [s-1] |
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| 25 | REAL(wp), PUBLIC :: reac_pocr !: reactivity of pocr in [s-1] |
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| 26 | REAL(wp), PUBLIC :: reac_nh4 !: reactivity of NH4 in [l.mol-1.s-1] |
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| 27 | REAL(wp), PUBLIC :: reac_h2s !: reactivity of ODU in [l.mol-1.s-1] |
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| 28 | REAL(wp), PUBLIC :: reac_fe2 !: reactivity of Fe2+ in [l.mol-1.s-1] |
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| 29 | REAL(wp), PUBLIC :: reac_feh2s !: reactivity of Fe2+ in [l.mol-1.s-1] |
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| 30 | REAL(wp), PUBLIC :: reac_feso !: reactivity of FeS with O2 in [l.mol-1.s-1] |
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| 31 | REAL(wp), PUBLIC :: reac_fesp !: precipitation of FeS [mol.l-1.s-1] |
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| 32 | REAL(wp), PUBLIC :: reac_fesd !: Dissolution of FeS [s-1] |
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| 33 | REAL(wp), PUBLIC :: reac_cal !: reactivity of cal in [l.mol-1.s-1] |
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| 34 | REAL(wp), PUBLIC :: adsnh4 !: adsorption coefficient of NH4 |
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| 35 | REAL(wp), PUBLIC :: adsfe2 !: adsorption coefficient of Fe2 |
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| 36 | REAL(wp), PUBLIC :: ratligc !: C/L ratio in POC |
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| 37 | REAL(wp), PUBLIC :: so2ut |
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| 38 | REAL(wp), PUBLIC :: srno3 |
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| 39 | REAL(wp), PUBLIC :: spo4r |
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| 40 | REAL(wp), PUBLIC :: srDnit |
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| 41 | REAL(wp), PUBLIC :: dtsed !: sedimentation time step |
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| 42 | INTEGER , PUBLIC :: nitsed000 |
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| 43 | INTEGER , PUBLIC :: nitsedend |
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| 44 | LOGICAL , PUBLIC :: lrst_sed !: logical to control the trc restart write |
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| 45 | LOGICAL , PUBLIC :: ln_rst_sed = .TRUE. !: initialisation from a restart file or not |
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| 46 | LOGICAL , PUBLIC :: ln_btbz = .FALSE. !: Depth variation of the bioturbation coefficient |
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| 47 | LOGICAL , PUBLIC :: ln_irrig = .FALSE. !: iActivation of the bioirrigation |
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| 48 | LOGICAL , PUBLIC :: ln_sed_2way = .FALSE. !: 2 way coupling with PISCES |
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| 49 | LOGICAL , PUBLIC :: ln_sediment_offline = .FALSE. !: Offline mode for sediment module |
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| 50 | INTEGER , PUBLIC :: nn_rstsed !: control of the time step ( 0 or 1 ) for pass. tr. |
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| 51 | INTEGER , PUBLIC :: nn_dtsed = 1 !: frequency of step on passive tracers |
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| 52 | CHARACTER(len = 80) , PUBLIC :: cn_sedrst_in !: suffix of pass. tracer restart name (input) |
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| 53 | CHARACTER(len = 256), PUBLIC :: cn_sedrst_indir !: restart input directory |
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| 54 | CHARACTER(len = 80) , PUBLIC :: cn_sedrst_out !: suffix of pass. tracer restart name (output) |
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| 55 | CHARACTER(len = 256), PUBLIC :: cn_sedrst_outdir !: restart output directory |
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| 56 | INTEGER, PUBLIC :: nrosorder !: order of the rosenbrock method |
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| 57 | REAL(wp), PUBLIC :: rosatol !: Tolerance for absolute error |
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| 58 | REAL(wp), PUBLIC :: rosrtol !: Tolerance for relative error |
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| 59 | |
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| 60 | ! |
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| 61 | REAL(wp), PUBLIC, DIMENSION(:,:,:), ALLOCATABLE :: pwcp, pwcpa |
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| 62 | REAL(wp), PUBLIC, DIMENSION(:,:,:), ALLOCATABLE :: solcp, solcpa |
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| 63 | REAL(wp), PUBLIC, DIMENSION(:,:,:), ALLOCATABLE :: diff |
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| 64 | |
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| 65 | !! * Shared module variables |
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| 66 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: pwcp_dta !: pore water data at given time-step |
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| 67 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: rainrm_dta !: rain data at at initial time |
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| 68 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: rainrg !: rain of each solid component in [g/(cm**2.s)] |
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| 69 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: fromsed !: |
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| 70 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: tosed !: |
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| 71 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: rearatpom !: |
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| 72 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: apluss, aminuss !: |
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| 73 | ! |
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| 74 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: temp !: temperature |
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| 75 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: salt !: salinity |
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| 76 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: fecratio !: Fe/C ratio in falling particles to the sediments |
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| 77 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: dzdep, slatit, slongit !: total thickness of solid material rained [cm] in each cell |
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| 78 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: zkbot !: total thickness of solid material rained [cm] in each cell |
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| 79 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: wacc !: total thickness of solid material rained [cm] in each cell |
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| 80 | ! |
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| 81 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: hipor !: [h+] in mol/kg*densSW |
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| 82 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: co3por !: [co3--]solid sediment at initial time |
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| 83 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: dz3d !: ??? |
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| 84 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: volw3d !: ??? |
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| 85 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: vols3d !: ??? |
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| 86 | REAL(wp), PUBLIC, DIMENSION(:,:,:), ALLOCATABLE :: volc |
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| 87 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: dens_sol !: Density of each solid fraction |
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| 88 | |
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| 89 | |
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| 90 | !! Chemistry |
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| 91 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: densSW |
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| 92 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: borats |
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| 93 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: calcon2 |
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| 94 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: akbs |
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| 95 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: ak1s |
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| 96 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: ak2s |
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| 97 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: akws |
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| 98 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: ak12s |
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| 99 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: ak1ps |
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| 100 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: ak2ps |
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| 101 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: ak3ps |
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| 102 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: ak12ps |
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| 103 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: ak123ps |
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| 104 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: aksis |
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| 105 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: aknh3 |
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| 106 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: aksps |
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| 107 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: akh2s |
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| 108 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: sieqs |
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| 109 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: aks3s |
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| 110 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: akf3s |
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| 111 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: sulfats |
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| 112 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: fluorids |
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| 113 | |
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| 114 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: mol_wgt !: molecular weight of solid sediment data |
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| 115 | |
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| 116 | REAL(wp), PUBLIC, DIMENSION(:,:,:), ALLOCATABLE :: trc_data !: tracer data to share with sediment model |
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| 117 | !! Geometry |
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| 118 | INTEGER , PUBLIC, SAVE :: jpoce, indoce !: Ocean points ( number/indices ) |
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| 119 | INTEGER , PUBLIC, DIMENSION(: ), ALLOCATABLE :: iarroce !: Computation of 1D array of sediments points |
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| 120 | INTEGER , PUBLIC, DIMENSION(:, : ), ALLOCATABLE :: jarr !: Computation of 1D array of sediments points |
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| 121 | INTEGER , PUBLIC, DIMENSION(: ), ALLOCATABLE :: jsvode, isvode !: Computation of 1D array of sediments points |
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| 122 | |
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| 123 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: epkbot !: ocean bottom layer thickness |
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| 124 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: gdepbot !: Depth of the sediment |
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| 125 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: dzkbot !: ocean bottom layer thickness in meters |
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| 126 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: dz !: sediment layers thickness |
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| 127 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: por !: porosity profile |
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| 128 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: por1 !: 1-por |
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| 129 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: volw !: volume of pore water cell fraction |
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| 130 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: vols !: volume of solid cell fraction |
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| 131 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: db !: bioturbation ceofficient |
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| 132 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: irrig !: bioturbation ceofficient |
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| 133 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: radssol, rads1sol |
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| 134 | REAL(wp), PUBLIC, DIMENSION(:,: ), ALLOCATABLE :: saturco3 |
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| 135 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: rdtsed !: sediment model time-step |
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| 136 | REAL(wp), PUBLIC, DIMENSION(: ), ALLOCATABLE :: rstepros !: Number of iteration of rosenbrock method |
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| 137 | REAL(wp) :: dens !: density of solid material |
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| 138 | !! Inputs / Outputs |
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| 139 | CHARACTER( len = 80 ), DIMENSION(jptrased ) :: sedtrcl |
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| 140 | CHARACTER( len = 20 ), DIMENSION(jptrased ) :: sedtrcd , sedtrcu |
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| 141 | CHARACTER( len = 80 ), DIMENSION(jpdia3dsed) :: seddia3l |
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| 142 | CHARACTER( len = 20 ), DIMENSION(jpdia3dsed) :: seddia3d, seddia3u |
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| 143 | CHARACTER( len = 80 ), DIMENSION(jpdia2dsed) :: seddia2l |
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| 144 | CHARACTER( len = 20 ), DIMENSION(jpdia2dsed) :: seddia2d, seddia2u |
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| 145 | ! |
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| 146 | |
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| 147 | INTEGER, PUBLIC :: numsed = 27 ! units |
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| 148 | |
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| 149 | !! $Id$ |
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| 150 | CONTAINS |
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| 151 | |
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| 152 | INTEGER FUNCTION sed_alloc() |
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| 153 | !!------------------------------------------------------------------- |
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| 154 | !! *** ROUTINE sed_alloc *** |
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| 155 | !!------------------------------------------------------------------- |
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| 156 | USE lib_mpp, ONLY: ctl_stop |
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| 157 | !!------------------------------------------------------------------- |
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| 158 | ! |
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| 159 | ALLOCATE( trc_data(jpi,jpj,jpdta) , & |
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| 160 | & epkbot(jpi,jpj), gdepbot(jpi,jpj) , & |
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| 161 | & dz(jpksed) , por(jpksed) , por1(jpksed) , & |
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| 162 | & volw(jpksed), vols(jpksed), rdtsed(jpksed) , & |
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| 163 | & mol_wgt(jpsol), STAT=sed_alloc ) |
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| 164 | |
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| 165 | IF( sed_alloc /= 0 ) CALL ctl_stop( 'STOP', 'sed_alloc: failed to allocate arrays' ) |
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| 166 | ! |
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| 167 | END FUNCTION sed_alloc |
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| 168 | |
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| 169 | END MODULE sed |
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