[1073] | 1 | MODULE sms_pisces |
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| 2 | !!---------------------------------------------------------------------- |
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| 3 | !! *** sms_pisces.F90 *** |
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| 4 | !! TOP : PISCES Source Minus Sink variables |
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| 5 | !!---------------------------------------------------------------------- |
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| 6 | !! History : 1.0 ! 2000-02 (O. Aumont) original code |
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[1445] | 7 | !! 3.2 ! 2009-04 (C. Ethe & NEMO team) style |
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[1073] | 8 | !!---------------------------------------------------------------------- |
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| 9 | USE par_oce |
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| 10 | USE par_trc |
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| 11 | |
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| 12 | IMPLICIT NONE |
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| 13 | PUBLIC |
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| 14 | |
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[12377] | 15 | CHARACTER(:), ALLOCATABLE :: numnatp_ref !! Character buffer for reference namelist pisces |
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| 16 | CHARACTER(:), ALLOCATABLE :: numnatp_cfg !! Character buffer for configuration namelist pisces |
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| 17 | INTEGER :: numonp = -1 !! Logical unit for namelist pisces output |
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[3294] | 18 | |
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[3680] | 19 | ! !: PISCES : silicon dependant half saturation |
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| 20 | |
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[7646] | 21 | !!* Model used |
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| 22 | LOGICAL :: ln_p2z !: Flag to use LOBSTER model |
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| 23 | LOGICAL :: ln_p4z !: Flag to use PISCES model |
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| 24 | LOGICAL :: ln_p5z !: Flag to use PISCES quota model |
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| 25 | LOGICAL :: ln_ligand !: Flag to enable organic ligands |
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[10222] | 26 | LOGICAL :: ln_sediment !: Flag to enable sediment module |
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[7646] | 27 | |
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[1445] | 28 | !!* Time variables |
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| 29 | INTEGER :: nrdttrc !: ??? |
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| 30 | REAL(wp) :: rfact , rfactr !: ??? |
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| 31 | REAL(wp) :: rfact2, rfact2r !: ??? |
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[2528] | 32 | REAL(wp) :: xstep !: Time step duration for biology |
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[4996] | 33 | REAL(wp) :: ryyss !: number of seconds per year |
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| 34 | REAL(wp) :: r1_ryyss !: inverse number of seconds per year |
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[1073] | 35 | |
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[4996] | 36 | |
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[1445] | 37 | !!* Biological parameters |
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| 38 | REAL(wp) :: rno3 !: ??? |
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| 39 | REAL(wp) :: o2ut !: ??? |
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| 40 | REAL(wp) :: po4r !: ??? |
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| 41 | REAL(wp) :: rdenit !: ??? |
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[3294] | 42 | REAL(wp) :: rdenita !: ??? |
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[1445] | 43 | REAL(wp) :: o2nit !: ??? |
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| 44 | REAL(wp) :: wsbio, wsbio2 !: ??? |
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[7646] | 45 | REAL(wp) :: wsbio2max !: ??? |
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| 46 | REAL(wp) :: wsbio2scale !: ??? |
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[1445] | 47 | REAL(wp) :: xkmort !: ??? |
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| 48 | REAL(wp) :: ferat3 !: ??? |
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[7646] | 49 | REAL(wp) :: ldocp !: ??? |
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| 50 | REAL(wp) :: ldocz !: ??? |
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| 51 | REAL(wp) :: lthet !: ??? |
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| 52 | REAL(wp) :: no3rat3 !: ??? |
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| 53 | REAL(wp) :: po4rat3 !: ??? |
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[1073] | 54 | |
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[7646] | 55 | |
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[3680] | 56 | !!* diagnostic parameters |
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| 57 | REAL(wp) :: tpp !: total primary production |
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| 58 | REAL(wp) :: t_oce_co2_exp !: total carbon export |
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| 59 | REAL(wp) :: t_oce_co2_flx !: Total ocean carbon flux |
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[4996] | 60 | REAL(wp) :: t_oce_co2_flx_cum !: Cumulative Total ocean carbon flux |
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[3680] | 61 | REAL(wp) :: t_atm_co2_flx !: global mean of atmospheric pco2 |
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[1073] | 62 | |
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[3680] | 63 | !!* restoring |
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| 64 | LOGICAL :: ln_pisdmp !: restoring or not of nutrients to a mean value |
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| 65 | INTEGER :: nn_pisdmp !: frequency of relaxation or not of nutrients to a mean value |
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[1073] | 66 | |
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[3680] | 67 | !!* Mass conservation |
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| 68 | LOGICAL :: ln_check_mass !: Flag to check mass conservation |
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[10788] | 69 | LOGICAL , PUBLIC :: ln_ironice !: boolean for Fe input from sea ice |
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[3680] | 70 | |
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[7646] | 71 | !!* Biological fluxes for light : variables shared by pisces & lobster |
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| 72 | INTEGER , ALLOCATABLE, SAVE, DIMENSION(:,:) :: neln !: number of T-levels + 1 in the euphotic layer |
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| 73 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: heup !: euphotic layer depth |
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| 74 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: etot !: par (photosynthetic available radiation) |
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| 75 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: etot_ndcy !: PAR over 24h in case of diurnal cycle |
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| 76 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: enano, ediat !: PAR for phyto, nano and diat |
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[10362] | 77 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: enanom, ediatm !: PAR for phyto, nano and diat |
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[7646] | 78 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: epico !: PAR for pico |
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[10362] | 79 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: epicom !: PAR for pico |
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[7646] | 80 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: emoy !: averaged PAR in the mixed layer |
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| 81 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: heup_01 !: Absolute euphotic layer depth |
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| 82 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: xksi !: LOBSTER : zooplakton closure |
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| 83 | |
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[1445] | 84 | !!* Biological fluxes for primary production |
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[7646] | 85 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: xksimax !: ??? |
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[3680] | 86 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: biron !: bioavailable fraction of iron |
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[7646] | 87 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: plig !: proportion of iron organically complexed |
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[1073] | 88 | |
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[7646] | 89 | !!* Sinking speed |
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| 90 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: wsbio3 !: POC sinking speed |
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| 91 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: wsbio4 !: GOC sinking speed |
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[3294] | 92 | |
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[1445] | 93 | !!* SMS for the organic matter |
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[2715] | 94 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xfracal !: ?? |
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| 95 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: nitrfac !: ?? |
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[8533] | 96 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: nitrfac2 !: ?? |
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[7646] | 97 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: orem !: ?? |
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[2715] | 98 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xdiss !: ?? |
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[3680] | 99 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: prodcal !: Calcite production |
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[7646] | 100 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: prodpoc !: Calcite production |
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| 101 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: conspoc !: Calcite production |
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| 102 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: prodgoc !: Calcite production |
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| 103 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: consgoc !: Calcite production |
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[10362] | 104 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: blim !: bacterial production factor |
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[7646] | 105 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: sizen !: size of diatoms |
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| 106 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: sizep !: size of diatoms |
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| 107 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: sized !: size of diatoms |
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| 108 | |
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| 109 | |
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[1445] | 110 | !!* Variable for chemistry of the CO2 cycle |
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[2715] | 111 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: ak13 !: ??? |
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| 112 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: ak23 !: ??? |
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| 113 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: aksp !: ??? |
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| 114 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: hi !: ??? |
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[3294] | 115 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: excess !: ??? |
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[6291] | 116 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: aphscale !: |
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[1073] | 117 | |
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[6291] | 118 | |
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[3294] | 119 | !!* Temperature dependancy of SMS terms |
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| 120 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: tgfunc !: Temp. dependancy of various biological rates |
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| 121 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: tgfunc2 !: Temp. dependancy of mesozooplankton rates |
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| 122 | |
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[12377] | 123 | LOGICAL, SAVE :: lk_sed |
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| 124 | |
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[2715] | 125 | !!---------------------------------------------------------------------- |
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[10067] | 126 | !! NEMO/TOP 4.0 , NEMO Consortium (2018) |
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[2715] | 127 | !! $Id$ |
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[10068] | 128 | !! Software governed by the CeCILL license (see ./LICENSE) |
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[2715] | 129 | !!---------------------------------------------------------------------- |
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| 130 | CONTAINS |
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| 131 | |
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| 132 | INTEGER FUNCTION sms_pisces_alloc() |
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| 133 | !!---------------------------------------------------------------------- |
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| 134 | !! *** ROUTINE sms_pisces_alloc *** |
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| 135 | !!---------------------------------------------------------------------- |
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[10425] | 136 | USE lib_mpp , ONLY: ctl_stop |
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[7646] | 137 | INTEGER :: ierr(10) ! Local variables |
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[2715] | 138 | !!---------------------------------------------------------------------- |
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| 139 | ierr(:) = 0 |
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[3680] | 140 | !* Biological fluxes for light : shared variables for pisces & lobster |
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[7646] | 141 | ALLOCATE( etot(jpi,jpj,jpk), neln(jpi,jpj), heup(jpi,jpj), & |
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| 142 | & heup_01(jpi,jpj) , xksi(jpi,jpj) , STAT=ierr(1) ) |
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[2715] | 143 | ! |
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[7646] | 144 | |
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| 145 | IF( ln_p4z .OR. ln_p5z ) THEN |
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| 146 | !* Biological fluxes for light |
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| 147 | ALLOCATE( enano(jpi,jpj,jpk) , ediat(jpi,jpj,jpk) , & |
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[10362] | 148 | & enanom(jpi,jpj,jpk) , ediatm(jpi,jpj,jpk), & |
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[7646] | 149 | & etot_ndcy(jpi,jpj,jpk), emoy(jpi,jpj,jpk) , STAT=ierr(2) ) |
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| 150 | |
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| 151 | !* Biological fluxes for primary production |
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| 152 | ALLOCATE( xksimax(jpi,jpj) , biron(jpi,jpj,jpk) , STAT=ierr(3) ) |
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[2715] | 153 | ! |
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[7646] | 154 | !* SMS for the organic matter |
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[8533] | 155 | ALLOCATE( xfracal (jpi,jpj,jpk), orem(jpi,jpj,jpk) , & |
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| 156 | & nitrfac(jpi,jpj,jpk), nitrfac2(jpi,jpj,jpk) , & |
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| 157 | & prodcal(jpi,jpj,jpk) , xdiss (jpi,jpj,jpk), & |
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[7646] | 158 | & prodpoc(jpi,jpj,jpk) , conspoc(jpi,jpj,jpk) , & |
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[10362] | 159 | & prodgoc(jpi,jpj,jpk) , consgoc(jpi,jpj,jpk) , & |
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| 160 | & blim (jpi,jpj,jpk) , STAT=ierr(4) ) |
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[3680] | 161 | |
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[7646] | 162 | !* Variable for chemistry of the CO2 cycle |
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| 163 | ALLOCATE( ak13 (jpi,jpj,jpk) , & |
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| 164 | & ak23(jpi,jpj,jpk) , aksp (jpi,jpj,jpk) , & |
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| 165 | & hi (jpi,jpj,jpk) , excess(jpi,jpj,jpk) , & |
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| 166 | & aphscale(jpi,jpj,jpk), STAT=ierr(5) ) |
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[2715] | 167 | ! |
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[7646] | 168 | !* Temperature dependancy of SMS terms |
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| 169 | ALLOCATE( tgfunc(jpi,jpj,jpk) , tgfunc2(jpi,jpj,jpk), STAT=ierr(6) ) |
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[3294] | 170 | ! |
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[7646] | 171 | !* Sinkong speed |
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| 172 | ALLOCATE( wsbio3 (jpi,jpj,jpk) , wsbio4 (jpi,jpj,jpk), & |
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[10362] | 173 | & STAT=ierr(7) ) |
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[7646] | 174 | ! |
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| 175 | IF( ln_ligand ) THEN |
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[10416] | 176 | ALLOCATE( plig(jpi,jpj,jpk) , STAT=ierr(8) ) |
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[7646] | 177 | ENDIF |
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| 178 | ENDIF |
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[2715] | 179 | ! |
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[7646] | 180 | IF( ln_p5z ) THEN |
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| 181 | ! |
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[10362] | 182 | ALLOCATE( epico(jpi,jpj,jpk) , epicom(jpi,jpj,jpk) , STAT=ierr(9) ) |
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[7646] | 183 | |
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| 184 | !* Size of phytoplankton cells |
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| 185 | ALLOCATE( sizen(jpi,jpj,jpk), sizep(jpi,jpj,jpk), & |
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| 186 | & sized(jpi,jpj,jpk), STAT=ierr(10) ) |
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| 187 | ENDIF |
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| 188 | ! |
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[2715] | 189 | sms_pisces_alloc = MAXVAL( ierr ) |
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| 190 | ! |
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[10425] | 191 | IF( sms_pisces_alloc /= 0 ) CALL ctl_stop( 'STOP', 'sms_pisces_alloc: failed to allocate arrays' ) |
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[2715] | 192 | ! |
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| 193 | END FUNCTION sms_pisces_alloc |
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| 194 | |
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[1073] | 195 | !!====================================================================== |
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| 196 | END MODULE sms_pisces |
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