| [3] | 1 | MODULE domain |
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| 2 | !!============================================================================== |
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| 3 | !! *** MODULE domain *** |
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| 4 | !! Ocean initialization : domain initialization |
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| 5 | !!============================================================================== |
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| [1438] | 6 | !! History : OPA ! 1990-10 (C. Levy - G. Madec) Original code |
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| 7 | !! ! 1992-01 (M. Imbard) insert time step initialization |
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| 8 | !! ! 1996-06 (G. Madec) generalized vertical coordinate |
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| 9 | !! ! 1997-02 (G. Madec) creation of domwri.F |
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| 10 | !! ! 2001-05 (E.Durand - G. Madec) insert closed sea |
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| 11 | !! NEMO 1.0 ! 2002-08 (G. Madec) F90: Free form and module |
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| 12 | !! 2.0 ! 2005-11 (V. Garnier) Surface pressure gradient organization |
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| [2528] | 13 | !! 3.3 ! 2010-11 (G. Madec) initialisation in C1D configuration |
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| [3] | 14 | !!---------------------------------------------------------------------- |
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| [1438] | 15 | |
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| 16 | !!---------------------------------------------------------------------- |
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| [3] | 17 | !! dom_init : initialize the space and time domain |
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| 18 | !! dom_nam : read and contral domain namelists |
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| 19 | !! dom_ctl : control print for the ocean domain |
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| 20 | !!---------------------------------------------------------------------- |
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| [2528] | 21 | USE oce ! ocean variables |
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| 22 | USE dom_oce ! domain: ocean |
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| [888] | 23 | USE sbc_oce ! surface boundary condition: ocean |
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| [719] | 24 | USE phycst ! physical constants |
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| [1601] | 25 | USE closea ! closed seas |
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| [719] | 26 | USE in_out_manager ! I/O manager |
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| [3] | 27 | USE lib_mpp ! distributed memory computing library |
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| 28 | |
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| 29 | USE domhgr ! domain: set the horizontal mesh |
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| 30 | USE domzgr ! domain: set the vertical mesh |
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| 31 | USE domstp ! domain: set the time-step |
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| 32 | USE dommsk ! domain: set the mask system |
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| 33 | USE domwri ! domain: write the meshmask file |
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| [592] | 34 | USE domvvl ! variable volume |
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| [2528] | 35 | USE c1d ! 1D vertical configuration |
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| 36 | USE dyncor_c1d ! Coriolis term (c1d case) (cor_c1d routine) |
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| [3] | 37 | |
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| 38 | IMPLICIT NONE |
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| 39 | PRIVATE |
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| 40 | |
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| [1438] | 41 | PUBLIC dom_init ! called by opa.F90 |
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| [3837] | 42 | PUBLIC dom_nam ! called by nemogcm::recursive_partition |
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| [3] | 43 | |
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| [3211] | 44 | !! * Control permutation of array indices |
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| 45 | # include "oce_ftrans.h90" |
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| 46 | # include "dom_oce_ftrans.h90" |
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| 47 | # include "sbc_oce_ftrans.h90" |
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| 48 | # include "domvvl_ftrans.h90" |
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| 49 | |
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| [3] | 50 | !! * Substitutions |
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| 51 | # include "domzgr_substitute.h90" |
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| [1438] | 52 | !!------------------------------------------------------------------------- |
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| [2528] | 53 | !! NEMO/OPA 3.3 , NEMO Consortium (2010) |
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| [888] | 54 | !! $Id$ |
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| [2528] | 55 | !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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| [1438] | 56 | !!------------------------------------------------------------------------- |
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| [3] | 57 | CONTAINS |
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| 58 | |
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| 59 | SUBROUTINE dom_init |
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| 60 | !!---------------------------------------------------------------------- |
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| 61 | !! *** ROUTINE dom_init *** |
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| 62 | !! |
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| 63 | !! ** Purpose : Domain initialization. Call the routines that are |
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| [1601] | 64 | !! required to create the arrays which define the space |
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| 65 | !! and time domain of the ocean model. |
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| [3] | 66 | !! |
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| [1601] | 67 | !! ** Method : - dom_msk: compute the masks from the bathymetry file |
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| 68 | !! - dom_hgr: compute or read the horizontal grid-point position |
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| 69 | !! and scale factors, and the coriolis factor |
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| 70 | !! - dom_zgr: define the vertical coordinate and the bathymetry |
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| 71 | !! - dom_stp: defined the model time step |
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| 72 | !! - dom_wri: create the meshmask file if nmsh=1 |
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| [2528] | 73 | !! - 1D configuration, move Coriolis, u and v at T-point |
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| [3] | 74 | !!---------------------------------------------------------------------- |
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| 75 | INTEGER :: jk ! dummy loop argument |
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| 76 | INTEGER :: iconf = 0 ! temporary integers |
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| 77 | !!---------------------------------------------------------------------- |
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| [1601] | 78 | ! |
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| [3] | 79 | IF(lwp) THEN |
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| 80 | WRITE(numout,*) |
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| 81 | WRITE(numout,*) 'dom_init : domain initialization' |
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| 82 | WRITE(numout,*) '~~~~~~~~' |
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| 83 | ENDIF |
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| [1601] | 84 | ! |
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| 85 | CALL dom_nam ! read namelist ( namrun, namdom, namcla ) |
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| 86 | CALL dom_clo ! Closed seas and lake |
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| 87 | CALL dom_hgr ! Horizontal mesh |
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| 88 | CALL dom_zgr ! Vertical mesh and bathymetry |
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| 89 | CALL dom_msk ! Masks |
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| 90 | IF( lk_vvl ) CALL dom_vvl ! Vertical variable mesh |
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| 91 | ! |
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| [2528] | 92 | IF( lk_c1d ) THEN ! 1D configuration |
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| 93 | CALL cor_c1d ! Coriolis set at T-point |
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| 94 | umask(:,:,:) = tmask(:,:,:) ! U, V moved at T-point |
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| 95 | vmask(:,:,:) = tmask(:,:,:) |
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| [3211] | 96 | #if defined key_z_first |
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| 97 | umask_1(:,:) = umask(:,:,1) |
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| 98 | vmask_1(:,:) = vmask(:,:,1) |
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| 99 | #endif |
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| [2528] | 100 | END IF |
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| 101 | ! |
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| [1601] | 102 | hu(:,:) = 0.e0 ! Ocean depth at U- and V-points |
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| [1438] | 103 | hv(:,:) = 0.e0 |
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| [3] | 104 | DO jk = 1, jpk |
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| 105 | hu(:,:) = hu(:,:) + fse3u(:,:,jk) * umask(:,:,jk) |
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| 106 | hv(:,:) = hv(:,:) + fse3v(:,:,jk) * vmask(:,:,jk) |
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| 107 | END DO |
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| [1601] | 108 | ! ! Inverse of the local depth |
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| [3211] | 109 | #if defined key_z_first |
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| 110 | hur(:,:) = 1. / ( hu(:,:) + 1.e0 - umask_1(:,:) ) * umask_1(:,:) |
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| 111 | hvr(:,:) = 1. / ( hv(:,:) + 1.e0 - vmask_1(:,:) ) * vmask_1(:,:) |
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| 112 | #else |
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| [1601] | 113 | hur(:,:) = 1. / ( hu(:,:) + 1.e0 - umask(:,:,1) ) * umask(:,:,1) |
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| 114 | hvr(:,:) = 1. / ( hv(:,:) + 1.e0 - vmask(:,:,1) ) * vmask(:,:,1) |
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| [3211] | 115 | #endif |
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| [216] | 116 | |
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| [1601] | 117 | CALL dom_stp ! time step |
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| 118 | IF( nmsh /= 0 ) CALL dom_wri ! Create a domain file |
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| 119 | IF( .NOT.ln_rstart ) CALL dom_ctl ! Domain control |
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| [1438] | 120 | ! |
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| [3] | 121 | END SUBROUTINE dom_init |
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| 122 | |
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| 123 | |
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| 124 | SUBROUTINE dom_nam |
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| 125 | !!---------------------------------------------------------------------- |
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| 126 | !! *** ROUTINE dom_nam *** |
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| 127 | !! |
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| 128 | !! ** Purpose : read domaine namelists and print the variables. |
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| 129 | !! |
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| 130 | !! ** input : - namrun namelist |
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| 131 | !! - namdom namelist |
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| 132 | !! - namcla namelist |
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| [2528] | 133 | !! - namnc4 namelist ! "key_netcdf4" only |
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| [3] | 134 | !!---------------------------------------------------------------------- |
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| 135 | USE ioipsl |
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| [1601] | 136 | NAMELIST/namrun/ nn_no , cn_exp , cn_ocerst_in, cn_ocerst_out, ln_rstart , nn_rstctl, & |
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| 137 | & nn_it000, nn_itend , nn_date0 , nn_leapy , nn_istate , nn_stock , & |
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| 138 | & nn_write, ln_dimgnnn, ln_mskland , ln_clobber , nn_chunksz |
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| [2528] | 139 | NAMELIST/namdom/ nn_bathy , rn_e3zps_min, rn_e3zps_rat, nn_msh , rn_hmin, & |
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| 140 | & nn_acc , rn_atfp , rn_rdt , rn_rdtmin , & |
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| [1601] | 141 | & rn_rdtmax, rn_rdth , nn_baro , nn_closea |
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| 142 | NAMELIST/namcla/ nn_cla |
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| [2528] | 143 | #if defined key_netcdf4 |
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| 144 | NAMELIST/namnc4/ nn_nchunks_i, nn_nchunks_j, nn_nchunks_k, ln_nc4zip |
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| 145 | #endif |
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| [3] | 146 | !!---------------------------------------------------------------------- |
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| 147 | |
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| [1601] | 148 | REWIND( numnam ) ! Namelist namrun : parameters of the run |
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| 149 | READ ( numnam, namrun ) |
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| 150 | ! |
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| 151 | IF(lwp) THEN ! control print |
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| [3] | 152 | WRITE(numout,*) |
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| 153 | WRITE(numout,*) 'dom_nam : domain initialization through namelist read' |
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| 154 | WRITE(numout,*) '~~~~~~~ ' |
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| [1601] | 155 | WRITE(numout,*) ' Namelist namrun' |
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| 156 | WRITE(numout,*) ' job number nn_no = ', nn_no |
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| 157 | WRITE(numout,*) ' experiment name for output cn_exp = ', cn_exp |
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| 158 | WRITE(numout,*) ' restart logical ln_rstart = ', ln_rstart |
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| [1604] | 159 | WRITE(numout,*) ' control of time step nn_rstctl = ', nn_rstctl |
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| [1601] | 160 | WRITE(numout,*) ' number of the first time step nn_it000 = ', nn_it000 |
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| 161 | WRITE(numout,*) ' number of the last time step nn_itend = ', nn_itend |
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| 162 | WRITE(numout,*) ' initial calendar date aammjj nn_date0 = ', nn_date0 |
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| 163 | WRITE(numout,*) ' leap year calendar (0/1) nn_leapy = ', nn_leapy |
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| 164 | WRITE(numout,*) ' initial state output nn_istate = ', nn_istate |
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| 165 | WRITE(numout,*) ' frequency of restart file nn_stock = ', nn_stock |
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| 166 | WRITE(numout,*) ' frequency of output file nn_write = ', nn_write |
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| 167 | WRITE(numout,*) ' multi file dimgout ln_dimgnnn = ', ln_dimgnnn |
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| 168 | WRITE(numout,*) ' mask land points ln_mskland = ', ln_mskland |
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| 169 | WRITE(numout,*) ' overwrite an existing file ln_clobber = ', ln_clobber |
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| 170 | WRITE(numout,*) ' NetCDF chunksize (bytes) nn_chunksz = ', nn_chunksz |
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| [3] | 171 | ENDIF |
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| 172 | |
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| [1601] | 173 | no = nn_no ! conversion DOCTOR names into model names (this should disappear soon) |
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| 174 | cexper = cn_exp |
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| 175 | nrstdt = nn_rstctl |
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| 176 | nit000 = nn_it000 |
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| 177 | nitend = nn_itend |
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| 178 | ndate0 = nn_date0 |
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| 179 | nleapy = nn_leapy |
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| 180 | ninist = nn_istate |
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| 181 | nstock = nn_stock |
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| 182 | nwrite = nn_write |
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| [3] | 183 | |
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| [1601] | 184 | |
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| 185 | ! ! control of output frequency |
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| [1335] | 186 | IF ( nstock == 0 .OR. nstock > nitend ) THEN |
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| [1601] | 187 | WRITE(ctmp1,*) 'nstock = ', nstock, ' it is forced to ', nitend |
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| [783] | 188 | CALL ctl_warn( ctmp1 ) |
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| [1335] | 189 | nstock = nitend |
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| [3] | 190 | ENDIF |
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| 191 | IF ( nwrite == 0 ) THEN |
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| [1601] | 192 | WRITE(ctmp1,*) 'nwrite = ', nwrite, ' it is forced to ', nitend |
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| [783] | 193 | CALL ctl_warn( ctmp1 ) |
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| 194 | nwrite = nitend |
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| [3] | 195 | ENDIF |
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| 196 | |
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| [2528] | 197 | #if defined key_agrif |
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| [1601] | 198 | IF( Agrif_Root() ) THEN |
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| [2528] | 199 | #endif |
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| 200 | SELECT CASE ( nleapy ) ! Choose calendar for IOIPSL |
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| 201 | CASE ( 1 ) |
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| 202 | CALL ioconf_calendar('gregorian') |
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| 203 | IF(lwp) WRITE(numout,*) ' The IOIPSL calendar is "gregorian", i.e. leap year' |
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| 204 | CASE ( 0 ) |
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| 205 | CALL ioconf_calendar('noleap') |
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| 206 | IF(lwp) WRITE(numout,*) ' The IOIPSL calendar is "noleap", i.e. no leap year' |
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| 207 | CASE ( 30 ) |
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| 208 | CALL ioconf_calendar('360d') |
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| 209 | IF(lwp) WRITE(numout,*) ' The IOIPSL calendar is "360d", i.e. 360 days in a year' |
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| 210 | END SELECT |
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| 211 | #if defined key_agrif |
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| [1601] | 212 | ENDIF |
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| [2528] | 213 | #endif |
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| [3] | 214 | |
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| [2528] | 215 | REWIND( numnam ) ! Namelist namdom : space & time domain (bathymetry, mesh, timestep) |
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| [3] | 216 | READ ( numnam, namdom ) |
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| 217 | |
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| 218 | IF(lwp) THEN |
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| [72] | 219 | WRITE(numout,*) |
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| [1601] | 220 | WRITE(numout,*) ' Namelist namdom : space & time domain' |
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| 221 | WRITE(numout,*) ' flag read/compute bathymetry nn_bathy = ', nn_bathy |
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| [2528] | 222 | WRITE(numout,*) ' min depth of the ocean (>0) or rn_hmin = ', rn_hmin |
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| 223 | WRITE(numout,*) ' min number of ocean level (<0) ' |
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| [1601] | 224 | WRITE(numout,*) ' minimum thickness of partial rn_e3zps_min = ', rn_e3zps_min, ' (m)' |
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| 225 | WRITE(numout,*) ' step level rn_e3zps_rat = ', rn_e3zps_rat |
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| 226 | WRITE(numout,*) ' create mesh/mask file(s) nn_msh = ', nn_msh |
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| [2528] | 227 | WRITE(numout,*) ' = 0 no file created ' |
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| 228 | WRITE(numout,*) ' = 1 mesh_mask ' |
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| 229 | WRITE(numout,*) ' = 2 mesh and mask ' |
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| 230 | WRITE(numout,*) ' = 3 mesh_hgr, msh_zgr and mask' |
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| [1601] | 231 | WRITE(numout,*) ' ocean time step rn_rdt = ', rn_rdt |
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| 232 | WRITE(numout,*) ' asselin time filter parameter rn_atfp = ', rn_atfp |
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| 233 | WRITE(numout,*) ' time-splitting: nb of sub time-step nn_baro = ', nn_baro |
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| 234 | WRITE(numout,*) ' acceleration of converge nn_acc = ', nn_acc |
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| 235 | WRITE(numout,*) ' nn_acc=1: surface tracer rdt rn_rdtmin = ', rn_rdtmin |
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| 236 | WRITE(numout,*) ' bottom tracer rdt rdtmax = ', rn_rdtmax |
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| 237 | WRITE(numout,*) ' depth of transition rn_rdth = ', rn_rdth |
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| 238 | WRITE(numout,*) ' suppression of closed seas (=0) nn_closea = ', nn_closea |
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| [223] | 239 | ENDIF |
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| 240 | |
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| [1601] | 241 | ntopo = nn_bathy ! conversion DOCTOR names into model names (this should disappear soon) |
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| 242 | e3zps_min = rn_e3zps_min |
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| 243 | e3zps_rat = rn_e3zps_rat |
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| 244 | nmsh = nn_msh |
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| 245 | nacc = nn_acc |
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| 246 | atfp = rn_atfp |
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| 247 | rdt = rn_rdt |
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| 248 | rdtmin = rn_rdtmin |
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| 249 | rdtmax = rn_rdtmin |
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| 250 | rdth = rn_rdth |
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| 251 | nclosea = nn_closea |
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| 252 | |
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| [2528] | 253 | REWIND( numnam ) ! Namelist cross land advection |
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| [3] | 254 | READ ( numnam, namcla ) |
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| 255 | IF(lwp) THEN |
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| [72] | 256 | WRITE(numout,*) |
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| [1601] | 257 | WRITE(numout,*) ' Namelist namcla' |
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| 258 | WRITE(numout,*) ' cross land advection nn_cla = ', nn_cla |
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| [3] | 259 | ENDIF |
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| 260 | |
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| [2528] | 261 | #if defined key_netcdf4 |
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| 262 | ! ! NetCDF 4 case ("key_netcdf4" defined) |
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| 263 | REWIND( numnam ) ! Namelist namnc4 : netcdf4 chunking parameters |
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| 264 | READ ( numnam, namnc4 ) |
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| 265 | IF(lwp) THEN ! control print |
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| 266 | WRITE(numout,*) |
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| 267 | WRITE(numout,*) ' Namelist namnc4 - Netcdf4 chunking parameters' |
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| 268 | WRITE(numout,*) ' number of chunks in i-dimension nn_nchunks_i = ', nn_nchunks_i |
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| 269 | WRITE(numout,*) ' number of chunks in j-dimension nn_nchunks_j = ', nn_nchunks_j |
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| 270 | WRITE(numout,*) ' number of chunks in k-dimension nn_nchunks_k = ', nn_nchunks_k |
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| 271 | WRITE(numout,*) ' apply netcdf4/hdf5 chunking & compression ln_nc4zip = ', ln_nc4zip |
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| 272 | ENDIF |
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| [1601] | 273 | |
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| [2528] | 274 | ! Put the netcdf4 settings into a simple structure (snc4set, defined in in_out_manager module) |
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| 275 | ! Note the chunk size in the unlimited (time) dimension will be fixed at 1 |
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| 276 | snc4set%ni = nn_nchunks_i |
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| 277 | snc4set%nj = nn_nchunks_j |
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| 278 | snc4set%nk = nn_nchunks_k |
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| 279 | snc4set%luse = ln_nc4zip |
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| 280 | #else |
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| 281 | snc4set%luse = .FALSE. ! No NetCDF 4 case |
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| 282 | #endif |
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| [1438] | 283 | ! |
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| [3] | 284 | END SUBROUTINE dom_nam |
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| 285 | |
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| 286 | |
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| 287 | SUBROUTINE dom_ctl |
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| 288 | !!---------------------------------------------------------------------- |
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| 289 | !! *** ROUTINE dom_ctl *** |
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| 290 | !! |
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| 291 | !! ** Purpose : Domain control. |
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| 292 | !! |
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| 293 | !! ** Method : compute and print extrema of masked scale factors |
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| 294 | !!---------------------------------------------------------------------- |
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| 295 | INTEGER :: iimi1, ijmi1, iimi2, ijmi2, iima1, ijma1, iima2, ijma2 |
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| [1601] | 296 | INTEGER, DIMENSION(2) :: iloc ! |
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| [3] | 297 | REAL(wp) :: ze1min, ze1max, ze2min, ze2max |
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| 298 | !!---------------------------------------------------------------------- |
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| [1601] | 299 | ! |
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| 300 | IF(lk_mpp) THEN |
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| [3211] | 301 | #if defined key_z_first |
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| 302 | CALL mpp_minloc( e1t(:,:), tmask_1(:,:), ze1min, iimi1,ijmi1 ) |
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| 303 | CALL mpp_minloc( e2t(:,:), tmask_1(:,:), ze2min, iimi2,ijmi2 ) |
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| 304 | CALL mpp_maxloc( e1t(:,:), tmask_1(:,:), ze1max, iima1,ijma1 ) |
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| 305 | CALL mpp_maxloc( e2t(:,:), tmask_1(:,:), ze2max, iima2,ijma2 ) |
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| 306 | #else |
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| [181] | 307 | CALL mpp_minloc( e1t(:,:), tmask(:,:,1), ze1min, iimi1,ijmi1 ) |
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| 308 | CALL mpp_minloc( e2t(:,:), tmask(:,:,1), ze2min, iimi2,ijmi2 ) |
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| 309 | CALL mpp_maxloc( e1t(:,:), tmask(:,:,1), ze1max, iima1,ijma1 ) |
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| 310 | CALL mpp_maxloc( e2t(:,:), tmask(:,:,1), ze2max, iima2,ijma2 ) |
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| [3211] | 311 | #endif |
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| [181] | 312 | ELSE |
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| 313 | ze1min = MINVAL( e1t(:,:), mask = tmask(:,:,1) == 1.e0 ) |
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| 314 | ze2min = MINVAL( e2t(:,:), mask = tmask(:,:,1) == 1.e0 ) |
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| 315 | ze1max = MAXVAL( e1t(:,:), mask = tmask(:,:,1) == 1.e0 ) |
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| 316 | ze2max = MAXVAL( e2t(:,:), mask = tmask(:,:,1) == 1.e0 ) |
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| [32] | 317 | |
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| [181] | 318 | iloc = MINLOC( e1t(:,:), mask = tmask(:,:,1) == 1.e0 ) |
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| 319 | iimi1 = iloc(1) + nimpp - 1 |
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| 320 | ijmi1 = iloc(2) + njmpp - 1 |
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| 321 | iloc = MINLOC( e2t(:,:), mask = tmask(:,:,1) == 1.e0 ) |
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| 322 | iimi2 = iloc(1) + nimpp - 1 |
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| 323 | ijmi2 = iloc(2) + njmpp - 1 |
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| 324 | iloc = MAXLOC( e1t(:,:), mask = tmask(:,:,1) == 1.e0 ) |
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| 325 | iima1 = iloc(1) + nimpp - 1 |
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| 326 | ijma1 = iloc(2) + njmpp - 1 |
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| 327 | iloc = MAXLOC( e2t(:,:), mask = tmask(:,:,1) == 1.e0 ) |
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| 328 | iima2 = iloc(1) + nimpp - 1 |
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| 329 | ijma2 = iloc(2) + njmpp - 1 |
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| [32] | 330 | ENDIF |
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| [3] | 331 | IF(lwp) THEN |
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| [1601] | 332 | WRITE(numout,*) |
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| 333 | WRITE(numout,*) 'dom_ctl : extrema of the masked scale factors' |
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| 334 | WRITE(numout,*) '~~~~~~~' |
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| [181] | 335 | WRITE(numout,"(14x,'e1t maxi: ',1f10.2,' at i = ',i5,' j= ',i5)") ze1max, iima1, ijma1 |
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| 336 | WRITE(numout,"(14x,'e1t mini: ',1f10.2,' at i = ',i5,' j= ',i5)") ze1min, iimi1, ijmi1 |
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| 337 | WRITE(numout,"(14x,'e2t maxi: ',1f10.2,' at i = ',i5,' j= ',i5)") ze2max, iima2, ijma2 |
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| 338 | WRITE(numout,"(14x,'e2t mini: ',1f10.2,' at i = ',i5,' j= ',i5)") ze2min, iimi2, ijmi2 |
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| [3] | 339 | ENDIF |
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| [1438] | 340 | ! |
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| [3] | 341 | END SUBROUTINE dom_ctl |
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| 342 | |
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| 343 | !!====================================================================== |
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| 344 | END MODULE domain |
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