1 | ###################################################### |
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2 | # Author : Simona Flavoni for NEMO |
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3 | # Contact : sflod@locean-ipsl.upmc.fr |
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4 | # |
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5 | # ---------------------------------------------------------------------- |
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6 | # NEMO/SETTE , NEMO Consortium (2010) |
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7 | # Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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8 | # ---------------------------------------------------------------------- |
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9 | # |
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10 | # Some scripts called by sette.sh |
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11 | # all_functions.sh : all functions used by sette.sh |
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12 | ###################################################### |
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13 | #set -x |
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14 | set -o posix |
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15 | #set -u |
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16 | #set -e |
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17 | #+ |
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18 | # |
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19 | # ================ |
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20 | # all_functions.sh |
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21 | # ================ |
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22 | # |
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23 | # ---------------------------------------------- |
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24 | # Set of functions used by sette.sh (NEMO tests) |
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25 | # ---------------------------------------------- |
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26 | # |
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27 | # SYNOPSIS |
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28 | # ======== |
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29 | # |
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30 | # :: |
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31 | # |
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32 | # $ ./set_namelist INPUT_NAMELIST VARIABLE VALUE |
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33 | # $ post_test_tidyup |
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34 | # |
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35 | # |
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36 | # DESCRIPTION |
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37 | # =========== |
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38 | # |
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39 | # function superegrep |
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40 | # input variable value |
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41 | # |
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42 | # function set_namelist |
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43 | # input namelist_name variable value |
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44 | # output namelist |
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45 | # |
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46 | # function post_test_tidyup |
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47 | # creates nemo_validation tree, and save output & debug files |
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48 | # this function creates tree of validation in NEMO_VALIDATION_DIR as follows : |
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49 | # |
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50 | # NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/REVISION_NUMBER(or DATE)/TEST_NAME |
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51 | # |
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52 | # NEMO_VALIDATION_DIR : is choosen in param.cfg |
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53 | # |
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54 | # WCONFIG_NAME : set by makenemo at the moment of compilation |
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55 | # |
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56 | # WCOMPILER_NAME : set by makenemo at the moment of compilation |
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57 | # |
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58 | # REVISION_NUMBER(or DATE) : revision number by svn info, if problems with svn date is taken |
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59 | # |
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60 | # TEST_NAME : set in sette.sh for each configuration to be tested (directory TEST_NAME is created under ${NEW_CONF} directory ) |
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61 | # |
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62 | # EXAMPLES |
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63 | # ======== |
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64 | # |
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65 | # :: |
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66 | # |
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67 | # $ ./set_namelist namelist nn_itend 75 |
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68 | # $ ./set_namelist namelist_ice_lim2 cn_icerst_in \"00101231_restart_ice\" |
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69 | # $ post_test_tidyup |
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70 | # |
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71 | # |
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72 | # TODO |
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73 | # ==== |
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74 | # |
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75 | # option debug |
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76 | # |
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77 | # |
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78 | # EVOLUTIONS |
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79 | # ========== |
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80 | # |
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81 | # $Id$ |
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82 | # |
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83 | # * creation |
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84 | #- |
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85 | # function to find namelists parameters |
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86 | supergrep () { |
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87 | grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" |
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88 | } |
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89 | |
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90 | usage=" Usage : set_namelist input_namelist variable_name value" |
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91 | usage=" if value is a string ths is neede syntax : ./set_namelist namelist_name var_name \"new_value\" " |
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92 | |
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93 | # function to set namelists parameters |
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94 | set_namelist () { |
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95 | minargcount=3 |
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96 | if [ ${#} -lt ${minargcount} ] |
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97 | then |
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98 | echo "not enought arguments for set_namelist" |
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99 | echo "${usage}" |
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100 | exit 1 |
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101 | fi |
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102 | unset minargcount |
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103 | if [ ! -f ${SETTE_DIR}/output.sette ] ; then |
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104 | touch ${SETTE_DIR}/output.sette |
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105 | fi |
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106 | |
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107 | echo "executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette |
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108 | echo "################" >> ${SETTE_DIR}/output.sette |
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109 | |
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110 | VAR_NAME=$( supergrep $2 ${EXE_DIR}/$1 ) |
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111 | if [ ${#VAR_NAME} -eq 0 ] |
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112 | then |
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113 | echo "doing \"set_namelist $@\". " |
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114 | echo "variable: \"$2\" is empty" |
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115 | echo "control that variable $2 is in \"${EXE_DIR}/$1\" " |
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116 | echo "exit" |
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117 | echo "error in executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette |
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118 | echo "....." >> ${SETTE_DIR}/output.sette |
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119 | exit 1 |
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120 | fi |
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121 | sed -e "s/${VAR_NAME}.*/${VAR_NAME}/" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp |
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122 | mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 |
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123 | sed -e "s/${VAR_NAME}/$2=$3/" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp |
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124 | mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 |
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125 | |
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126 | echo "finished script : set_namelist $@" >> ${SETTE_DIR}/output.sette |
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127 | echo "++++++++++++++++" >> ${SETTE_DIR}/output.sette |
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128 | echo " " >> ${SETTE_DIR}/output.sette |
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129 | } |
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130 | |
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131 | # function to tidy up after each test and populate the NEMO_VALIDATION store |
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132 | post_test_tidyup () { |
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133 | # |
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134 | # requires the following variables defined and exported from the calling script: |
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135 | # SETTE_DIR |
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136 | # INPUT_DIR |
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137 | # EXE_DIR |
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138 | # CONFIG_DIR |
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139 | # NEMO_VALIDATION_DIR |
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140 | # NEW_CONF |
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141 | # CMP_NAM |
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142 | # TEST_NAME |
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143 | echo "SETTE directory is : ${SETTE_DIR}" |
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144 | echo "INPUT directory is : ${INPUT_DIR}" |
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145 | echo "EXECUTION directory is : ${EXE_DIR}" |
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146 | echo "CONFIG directory is : ${CONFIG_DIR}" |
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147 | echo "VALIDATION directory is : ${NEMO_VALIDATION_DIR}" |
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148 | echo "NEW CONFIGURATION is : ${NEW_CONF}" |
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149 | echo "COMPILER is : ${CMP_NAM}" |
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150 | echo "TEST is : ${TEST_NAME}" |
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151 | ################################################################ |
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152 | # SMALL DEBUG |
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153 | if [ ! -r ${EXE_DIR}/time.step ] |
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154 | then |
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155 | echo "file time.step does not exist" >> ${SETTE_DIR}/output.sette |
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156 | echo "some problems during execution of model" >> ${SETTE_DIR}/output.sette |
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157 | exit 1 |
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158 | else |
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159 | echo "file time.step exists" >> ${SETTE_DIR}/output.sette |
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160 | echo "ok model run" >> ${SETTE_DIR}/output.sette |
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161 | fi |
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162 | ################################################################ |
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163 | |
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164 | ################################################################ |
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165 | # Creation of NEMO_VALIDATION tree |
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166 | export LANG=en_US |
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167 | cd ${CONFIG_DIR} |
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168 | cd ../ |
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169 | REVISION_NB=`svn info | grep -i "Revision:" | sed -e "s/ //" | cut -d ":" -f 2` |
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170 | if [ ${#REVISION_NB} -eq 0 ] |
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171 | then |
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172 | echo "some problems with svn info command" |
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173 | echo "some problems with svn info command" >> ${SETTE_DIR}/output.sette |
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174 | REVISION_NB=`date +%Y%m%d` |
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175 | echo "put in ${REVISION_NB} date" |
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176 | echo "put in ${REVISION_NB} date" >> ${SETTE_DIR}/output.sette |
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177 | else |
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178 | echo "value of revision number of NEMOGCM: ${REVISION_NB}" |
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179 | fi |
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180 | cd ${NEMO_VALIDATION_DIR} |
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181 | `mkdir -p ${NEMO_VALIDATION_DIR}/W${NEW_CONF}/${CMP_NAM}/${REVISION_NB}/${TEST_NAME}` |
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182 | NEMO_VALID=${NEMO_VALIDATION_DIR}/W${NEW_CONF}/${CMP_NAM}/${REVISION_NB}/${TEST_NAME} |
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183 | if [ -d ${NEMO_VALID} ] ; then |
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184 | echo "created ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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185 | else |
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186 | echo "problems in creating ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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187 | echo "EXIT," |
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188 | exit 1 |
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189 | fi |
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190 | # Save output & debug files in NEMO_VALIDATION tree |
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191 | echo "saving ocean & ice output, solver.stat, tracer.stat files ...." >> ${SETTE_DIR}/output.sette |
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192 | echo " " >> ${SETTE_DIR}/output.sette |
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193 | [ -f ${EXE_DIR}/*ocean.output ] && cp ${EXE_DIR}/*ocean.output ${NEMO_VALID}/. |
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194 | [ -f ${EXE_DIR}/*solver.stat ] && cp ${EXE_DIR}/*solver.stat ${NEMO_VALID}/. |
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195 | [ -f ${EXE_DIR}/*tracer.stat ] && cp ${EXE_DIR}/*tracer.stat ${NEMO_VALID}/. |
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196 | if [ -n "$(ls ${NEMO_VALID}/*solver*)" ] ; then |
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197 | echo "moved solver.stat in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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198 | echo "moved solver.stat in ${NEMO_VALID} directory" |
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199 | else |
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200 | echo "problem in looking for solver.stat file in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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201 | echo "solver.stat IS NOT in ${NEMO_VALID} directory" |
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202 | fi |
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203 | if [ -n "$(ls ${NEMO_VALID}/*ocean.output*)" ] ; then |
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204 | echo "moved ocean.output in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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205 | echo "moved ocean.output in ${NEMO_VALID} directory" |
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206 | else |
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207 | echo "problem in looking for ocean.output file in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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208 | echo "ocean.output IS NOT in ${NEMO_VALID} directory" |
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209 | fi |
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210 | if [ -n "$(ls ${NEMO_VALID}/*tracer.stat*)" ] ; then |
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211 | echo "moved tracer.stat in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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212 | echo "moved tracer.stat in ${NEMO_VALID} directory" |
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213 | else |
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214 | echo "problem in looking for tracer.stat file in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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215 | echo "tracer.stat IS NOT in ${NEMO_VALID} directory" |
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216 | fi |
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217 | } |
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