1 | ##################################################### |
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2 | # Author : Simona Flavoni for NEMO |
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3 | # Contact : sflod@locean-ipsl.upmc.fr |
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4 | # |
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5 | # Some scripts called by sette.sh |
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6 | # fcm_job.sh : simple job to run NEMO with fcm |
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7 | ###################################################### |
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8 | #set -x |
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9 | set -o posix |
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10 | #set -u |
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11 | #set -e |
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12 | #+ |
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13 | # |
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14 | # ================ |
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15 | # fcm_job.sh |
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16 | # ================ |
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17 | # |
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18 | # -------------------------- |
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19 | # Simple job for NEMO tests |
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20 | # -------------------------- |
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21 | # |
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22 | # SYNOPSIS |
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23 | # ======== |
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24 | # |
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25 | # :: |
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26 | # |
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27 | # $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC TEST_NAME |
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28 | # |
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29 | # |
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30 | # DESCRIPTION |
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31 | # =========== |
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32 | # |
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33 | # |
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34 | # Simple job for SET TESTS for NEMO (SETTE) |
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35 | # |
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36 | # this job creates tree of validation in NEMO_VALIDATION_DIR as follows : |
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37 | # |
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38 | # NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE) |
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39 | # |
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40 | # NEMO_VALIDATION_DIR : is choosen in param.cfg |
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41 | # |
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42 | # WCONFIG_NAME : set by makenemo at the moment of compilation |
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43 | # |
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44 | # WCOMPILER_NAME : set by makenemo at the moment of compilation |
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45 | # |
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46 | # TEST_NAME : convention is LONG=10 days run, SHORT=5 days run |
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47 | # |
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48 | # REVISION_NUMBER(or DATE) : revision number by svn info, if problems with svn date is taken |
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49 | # |
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50 | # EXAMPLES |
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51 | # ======== |
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52 | # |
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53 | # :: |
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54 | # |
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55 | # $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC TEST_NAME |
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56 | # |
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57 | # run a job of config GYRE with 1 processor test REPRODUCTINILITY |
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58 | # $ ./fcm_job.sh input_GYRE.cfg 1 SHORT |
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59 | # |
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60 | # run a job of config ORCA2_LIM_PISCES with 8 processors test RESTARTABILITY |
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61 | # $ ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8 LONG |
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62 | # |
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63 | # |
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64 | # TODO |
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65 | # ==== |
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66 | # |
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67 | # option debug |
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68 | # |
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69 | # |
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70 | # EVOLUTIONS |
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71 | # ========== |
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72 | # |
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73 | # $Id$ |
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74 | # |
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75 | # |
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76 | # |
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77 | # * creation |
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78 | # |
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79 | #- |
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80 | # |
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81 | |
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82 | usage=" Usage : ./fcm_job.sh input_CONFIG_NAME.cfg NUMBER_OF_PROCS TEST_NAME" |
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83 | usage=" example : ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8 RUN" |
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84 | |
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85 | |
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86 | minargcount=3 |
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87 | if [ ${#} -lt ${minargcount} ] |
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88 | then |
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89 | echo "not enought arguments for fcm_job.sh script" |
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90 | echo "control number of argument of fcm_job.sh in sette.sh" |
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91 | echo "${usage}" |
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92 | exit 1 |
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93 | fi |
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94 | unset minargcount |
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95 | if [ ! -f ${SETTE_DIR}/output.sette ] ; then |
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96 | touch ${SETTE_DIR}/output.sette |
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97 | fi |
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98 | |
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99 | echo "date: `date`" >> ${SETTE_DIR}/output.sette |
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100 | echo "" >> ${SETTE_DIR}/output.sette |
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101 | echo "running config: ${NEW_CONF}" >> ${SETTE_DIR}/output.sette |
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102 | echo "" >> ${SETTE_DIR}/output.sette |
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103 | echo "list of cpp_keys: " >> ${SETTE_DIR}/output.sette |
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104 | echo "`more ../CONFIG/${NEW_CONF}/cpp_${NEW_CONF}.fcm`" >> ${SETTE_DIR}/output.sette |
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105 | echo "" >> ${SETTE_DIR}/output.sette |
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106 | echo "compiling with: ${CMP_NAM}" >> ${SETTE_DIR}/output.sette |
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107 | echo "" >> ${SETTE_DIR}/output.sette |
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108 | echo "executing script : \"fcm_job $@\" " >> ${SETTE_DIR}/output.sette |
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109 | echo " " >> ${SETTE_DIR}/output.sette |
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110 | |
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111 | ################################################################ |
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112 | # SET INPUT |
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113 | # get the input tarfile if needed |
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114 | tar_file=$(sed -ne "1,1p" $1) |
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115 | if [ "$(cat $1 | grep -c ".tar" )" -ne 0 ] ; then |
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116 | echo "looking for tar file" >> ${SETTE_DIR}/output.sette |
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117 | echo " " >> ${SETTE_DIR}/output.sette |
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118 | cp ${FORCING_DIR}/${tar_file} ${INPUT_DIR}/. |
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119 | if [ ! -f ${INPUT_DIR}/${tar_file} ] ; then |
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120 | echo "PROBLEM during copy of tar file" >> ${SETTE_DIR}/output.sette |
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121 | echo "tar file IS NOT present in ${INPUT_DIR} directory " >> ${SETTE_DIR}/output.sette |
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122 | echo " " >> ${SETTE_DIR}/output.sette |
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123 | echo "PROBLEM during copy of tar file" |
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124 | exit 1 |
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125 | else |
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126 | cd ${INPUT_DIR} ; tar xvof ${INPUT_DIR}/*.tar ; gunzip -f *gz |
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127 | fi |
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128 | fi |
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129 | |
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130 | if [ -f ${INPUT_DIR}/namelist_ice_lim2 ] ; then |
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131 | echo "choosing for namelist ice " >> ${SETTE_DIR}/output.sette |
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132 | echo " " >> ${SETTE_DIR}/output.sette |
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133 | cp ${INPUT_DIR}/namelist_ice_lim2 ${INPUT_DIR}/namelist_ice |
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134 | elif [ -f ${INPUT_DIR}/namelist_ice_lim3 ] ; then |
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135 | cp ${INPUT_DIR}/namelist_ice_lim3 ${INPUT_DIR}/namelist_ice |
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136 | fi |
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137 | |
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138 | |
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139 | if [ "$(cat ${CONFIG_DIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm | grep -c "agrif" )" -ne 0 ] ; then |
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140 | #- Namelist for ocean and ice (agrif fine grid) |
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141 | echo "choosing for namelist for AGRIF" >> ${SETTE_DIR}/output.sette |
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142 | echo " " >> ${SETTE_DIR}/output.sette |
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143 | cp ${INPUT_DIR}/1_namelist_ice_lim2 ${INPUT_DIR}/1_namelist_ice |
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144 | fi |
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145 | ################################################################ |
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146 | |
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147 | ################################################################ |
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148 | # RUN OPA |
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149 | cd ${INPUT_DIR} |
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150 | NB_PROC=$2 |
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151 | if [ ! -r ${INPUT_DIR}/opa ] |
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152 | then |
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153 | echo "executable opa does not exist" |
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154 | echo "executable opa does not exist, exit" >> ${SETTE_DIR}/output.sette |
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155 | exit 1 |
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156 | fi |
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157 | if [ ${NB_PROC} == 1 ] ; then |
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158 | echo "running opa" >> ${SETTE_DIR}/output.sette |
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159 | echo " " >> ${SETTE_DIR}/output.sette |
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160 | ./opa |
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161 | else |
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162 | echo "running opa in MPI" >> ${SETTE_DIR}/output.sette |
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163 | echo " " >> ${SETTE_DIR}/output.sette |
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164 | # example for brodie (NEC SX8) machine |
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165 | # mpirun -np ${NB_PROC} opa |
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166 | # example for dedale machine |
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167 | # mpirun --mca btl self,tcp -np ${NB_PROC} opa |
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168 | # example for vargas (IBM Power6) machine |
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169 | mpiexec -n ${NB_PROC} opa |
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170 | fi |
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171 | ################################################################ |
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172 | # SMALL DEBUG |
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173 | # echo "control that time.step exists |
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174 | if [ ! -r ${INPUT_DIR}/time.step ] |
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175 | then |
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176 | echo "file time.step does not exist" >> ${SETTE_DIR}/output.sette |
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177 | echo "some problems during execution of model" >> ${SETTE_DIR}/output.sette |
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178 | exit 1 |
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179 | else |
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180 | echo "file time.step exists" >> ${SETTE_DIR}/output.sette |
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181 | echo "ok model run" >> ${SETTE_DIR}/output.sette |
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182 | fi |
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183 | ################################################################ |
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184 | |
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185 | ################################################################ |
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186 | # SAVE OUTPUT, DEBUG & RESTART FILES |
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187 | echo "saving ocean & ice output, debug & restart files" >> ${SETTE_DIR}/output.sette |
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188 | echo " " >> ${SETTE_DIR}/output.sette |
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189 | [ ! -d ${OUTPUT_DIR} ] && mkdir ${OUTPUT_DIR} |
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190 | [ -f *ocean.output ] && mv *ocean.output ${OUTPUT_DIR}/. |
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191 | [ -f *solver.stat ] && mv *solver.stat ${OUTPUT_DIR}/. |
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192 | [ -n "$(ls *_grid_*)" ] && mv *_grid_*.nc ${OUTPUT_DIR}/. |
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193 | [ -n "$(ls *_ptrc_*)" ] && mv *_ptrc_*.nc ${OUTPUT_DIR}/. |
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194 | [ -n "$(ls *_diad_*)" ] && mv *_diad_*.nc ${OUTPUT_DIR}/. |
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195 | [ -n "`ls *restart*`" ] && cp *restart*.nc ${OUTPUT_DIR}/. |
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196 | [ -f ice_evolu ] && mv ice_evolu ${OUTPUT_DIR}/. |
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197 | [ -n "`ls *icemod*`" ] && mv *icemod* ${OUTPUT_DIR}/. |
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198 | #- Save ftrace file |
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199 | [ -f ftrace.out* ] && cp ftrace.out* ${OUTPUT_DIR}/. |
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200 | ################################################################ |
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201 | |
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202 | ################################################################ |
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203 | # SAVE IN NEMO_VALIDATION tree |
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204 | export LANG=en_US |
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205 | cd ${CONFIG_DIR} |
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206 | cd ../ |
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207 | REVISION_NB=`svn info | grep -i "Revision:" | sed -e "s/ //" | cut -d ":" -f 2` |
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208 | if [ ${#REVISION_NB} -eq 0 ] |
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209 | then |
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210 | echo "some problems with svn info command" |
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211 | echo "some problems with svn info command" >> ${SETTE_DIR}/output.sette |
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212 | REVISION_NB=`date +%Y%m%d` |
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213 | echo "put in ${REVISION_NB} date" |
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214 | echo "put in ${REVISION_NB} date" >> ${SETTE_DIR}/output.sette |
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215 | else |
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216 | echo "value of revision number of NEMOGCM: ${REVISION_NB}" |
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217 | fi |
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218 | cd ${NEMO_VALIDATION_DIR} |
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219 | export TEST_NAME=$3 |
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220 | `mkdir -p ${NEMO_VALIDATION_DIR}/W${NEW_CONF}/${CMP_NAM}/${REVISION_NB}/${TEST_NAME}` |
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221 | NEMO_VALID=${NEMO_VALIDATION_DIR}/W${NEW_CONF}/${CMP_NAM}/${REVISION_NB}/${TEST_NAME} |
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222 | if [ -d ${NEMO_VALID} ] ; then |
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223 | echo "created ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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224 | else |
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225 | echo "problems in creating ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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226 | echo "EXIT," |
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227 | exit 1 |
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228 | fi |
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229 | [ -f ${OUTPUT_DIR}/*ocean.output ] && mv ${OUTPUT_DIR}/*ocean.output ${NEMO_VALID}/. |
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230 | [ -f ${OUTPUT_DIR}/*solver.stat ] && mv ${OUTPUT_DIR}/*solver.stat ${NEMO_VALID}/. |
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231 | [ -n "`ls ${OUTPUT_DIR}/*restart*`" ] && mv ${OUTPUT_DIR}/*restart* ${NEMO_VALID}/. |
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232 | [ -f ${OUTPUT_DIR}/ice_evolu ] && mv ${OUTPUT_DIR}/ice_evolu ${NEMO_VALID}/. |
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233 | if [ -n "$(ls ${NEMO_VALID}/*solver*)" ] ; then |
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234 | echo "moved solver.stat in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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235 | echo "moved solver.stat in ${NEMO_VALID} directory" |
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236 | else |
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237 | echo "problem in looking for solver.stat file in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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238 | echo "solver.stat IS NOT in ${NEMO_VALID} directory" |
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239 | fi |
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240 | if [ -n "$(ls ${NEMO_VALID}/*ocean.output*)" ] ; then |
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241 | echo "moved ocean.output in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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242 | echo "moved ocean.output in ${NEMO_VALID} directory" |
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243 | else |
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244 | echo "problem in looking for ocean.output file in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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245 | echo "ocean.output IS NOT in ${NEMO_VALID} directory" |
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246 | fi |
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247 | if [ -n "`ls ${NEMO_VALID}/*restart*`" ] ; then |
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248 | echo "moved restart files in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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249 | echo "moved restart files in ${NEMO_VALID} directory" |
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250 | else |
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251 | echo "problem in looking for restart files in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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252 | echo "restart files ARE NOT in ${NEMO_VALID} directory" |
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253 | fi |
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254 | if [ -n "$(ls ${NEMO_VALID}/ice_evolu)" ] ; then |
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255 | echo "moved ice_evolu in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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256 | echo "moved ice_evolu in ${NEMO_VALID} directory" |
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257 | else |
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258 | echo "problem looking for ice_evolu file in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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259 | echo "ice_evolu IS NOT in ${NEMO_VALID} directory" |
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260 | fi |
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261 | ################################################################ |
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