source: branches/2012/dev_r3379_CMCC6_topbfm/NEMOGCM/CONFIG/PELAGOS/EXP00/bfm.nml @ 3399

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! MODEL  BFM - Biogeochemical Flux Model
!-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
!BOP
!
! ROUTINE: Namelist for standalone
!
! DESCRIPTION
!  Parameter values for module standalone filled by init_standalone
!
! AUTHORS
!   Marcello Vichi and Piet Ruardij
!
! COPYING
!   
!   Copyright (C) 2008 M. Vichi and P. Ruardij
!   (rua@nioz.nl; vichi@bo.ingv.it)
!
!   This program is free software; you can redistribute it and/or modify
!   it under the terms of the GNU General Public License as published by
!   the Free Software Foundation;
!   This program is distributed in the hope that it will be useful,
!   but WITHOUT ANY WARRANTY; without even the implied warranty of
!   MERCHANTEABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
!   GNU General Public License for more details.
!
!EOP
!-------------------------------------------------------------------------!
!BOC

!-------------------------------------------------------------------------!
!NAMELIST bfm_nml
!-------------------------------------------------------------------------!
!Main initialisation and output specifications
!NAME           KIND    DESCRIPTION
!bio_calc       logical Switch on/off BFM (for coupled configurations)
!bfm_init       integer Initialization state
!                       0. from constant values in bfm_init_nml below
!                       1. from restart
!bfm_rstctl     logical Save initial state of bfm in the output file.
!bio_setup      integer BFM configuration:
!                       1. pelagic
!                       2. benthic
!                       3. pelagic and benthic
!out_fname      string  Name of NetCDF output file
!out_dir        string  Path to the output file
!out_title      string  Name of the experiment in NetCDF file
!out_delta      integer Output is saved every out_delta timesteps
!parallel_log   logical Set to .FALSE. to produce a log file for each
!                       parallel process
!-------------------------------------------------------------------------!
&bfm_nml
    bio_calc = .TRUE.
    bfm_init = 0
  bfm_rstctl = .FALSE.                                                                                                              
   bio_setup = 1                                                                                                                    
   out_fname = 'BFM_NEMO'                                                                                                           
     out_dir = '.'                                                                                                                  
   out_title = 'PELAGOS'                                                                                                            
   out_delta = 45
parallel_log = .FALSE.
/

!-------------------------------------------------------------------------!
!NAMELIST bfm_init_nml
!-------------------------------------------------------------------------!
!Pelagic initialisation
! pelagic  (O)              O2:   Oxygen (mmol/m3)
! pelagic  (P)              N1:   Phosphate (mmol/m3)
! pelagic  (N)              N3:   Nitrate (mmol/m3)
! pelagic  (N)              N4:   Ammonium (mmol/m3)
! pelagic  (Si)             N5:   Silicate (mmol/m3)
! pelagic  (R)              N6:   Reduction Equivalents (mmol/m3)
! pelagic  (N)              O4:   N2-sink (mmol/m3)
! pelagic  (CNP)            B1:   Pelagic Bacteria
! pelagic  (CNPSiI)         P1:   Diatoms (group PhytoPlankton))
! pelagic  (CNPSiI)         P2:   Flagellates (group PhytoPlankton))
! pelagic  (CNPSiI)         P3:   PicoPhytoPlankton (group PhytoPlankton))
! pelagic  (CNPSiI)         P4:   Dinoflagellates (group PhytoPlankton))
! pelagic  (CNP)            Z3:   Carnivorous mesozooplankton (group MesoZooPlankton))
! pelagic  (CNP)            Z4:   Omnivorous mesozooplankton (group MesoZooPlankton))
! pelagic  (CNP)            Z5:   Microzooplankton (group MicroZooPlankton))
! pelagic  (CNP)            Z6:   Heterotrophic nanoflagellates (HNAN) (group MicroZooPlankton))
! pelagic  (CNPSi)          R1:   Labile Organic Carbon (LOC)
! pelagic  (C)              R2:   CarboHydrates (sugars)
! pelagic  (CNPSi)          R6:   Particulate Organic Carbon (POC)
! pelagic  (C)              R7:   Refractory Disoolved Organic Carbon
!<variablename>0 = <realvalue>
!
! Initialization with InitVar structure
! BFM variable information for data input
! availabel fields:
! integer init: select the initialization
!               0 = homogeneous
!               1 = analytical
!               2 = from file
! options for init==1
! real anv1: value in the surface layer
! real anz1: depth of the surface layer
! real anv2: value in the bottom layer
! real anz2: depth of the bottom layer
! options for init==2 (not used when coupled with NEMO because 
!                      overridden by values in namelist_top)
! char filename: name of the input file
! char  varname: name of the var in input file
! Options currently used when coupled with NEMO
! logical obc: variable has open boundary data
! logical sbc: variable has surface boundary data
! logical cbc: variable has coastal boundary data
!-------------------------------------------------------------------------!
&bfm_init_nml
   O2o0 = 300.0,
   InitVar(1)%init = 0,
   InitVar(1)%sbc  = .false.,
   InitVar(1)%cbc  = .false.,
   InitVar(1)%obc  = .false.,
   N1p0 = 1.0,
   InitVar(2)%init = 2,
   InitVar(2)%sbc  = .false.,
   InitVar(2)%cbc  = .true.,
   InitVar(2)%obc  = .false.,
   N3n0 = 5.0,
   InitVar(3)%init = 2,
   InitVar(3)%sbc  = .false.,
   InitVar(3)%cbc  = .true.,
   InitVar(3)%obc  = .false.,
   N4n0 = 1.0,
   N5s0 = 8.0,
   InitVar(6)%init = 2,
   InitVar(6)%sbc  = .false.,
   InitVar(6)%cbc  = .true.,
   InitVar(6)%obc  = .false.,
   N7f0 = 0.3,
   InitVar(8)%init = 2,
   InitVar(8)%sbc  = .true.,
   InitVar(8)%cbc  = .true.,
   InitVar(8)%obc  = .false.,
   N6r0 = 1.0,
   O4n0 = 200.0,
   P1c0 = 1.0,
   P2c0 = 1.0,
   P3c0 = 1.0,
   Z3c0 = 1.0,
   Z4c0 = 1.0,
   Z5c0 = 1.0,
   Z6c0 = 1.0,
   B1c0 = 1.0,
   R2c0 = 0.1,
   R6c0 = 0.1,
   R7c0 = 1.0,
   R1c0 = 1.0,
   InitVar(45)%init = 2,
   InitVar(45)%sbc  = .false.,
   InitVar(45)%cbc  = .true.,
   InitVar(45)%obc  = .false.,
   O3c0 = 0.0,
   InitVar(56)%init = 2,
   InitVar(56)%sbc  = .false.,
   InitVar(56)%cbc  = .true.,
   InitVar(56)%obc  = .false.,
   O3h0 = 0.0,
   InitVar(57)%init = 2,
   InitVar(57)%sbc  = .false.,
   InitVar(57)%cbc  = .false.,
   InitVar(57)%obc  = .false.,
/

!-------------------------------------------------------------------------!
!NAMELIST bfm_save_nml
!-------------------------------------------------------------------------!
!Stored variables
!ave_save: average values over the output interval
!var_save: instantaneous value at the output interval
!-------------------------------------------------------------------------!
&bfm_save_nml
   ave_save = 'ETW','O2o','O3c','O3h',
          'DIC','Ac','pCO2','pH',
          'EIR',
          'N1p',
          'N3n',
          'N4n',
          'N5s',
          'N7f',
          'P1c',
          'P1f',
          'P2c',
          'P3c',
          'Z3c',
          'Z4c',
          'Z5c',
          'Z6c',
          'R1c',
          'R2c',
          'R6c',
          'R6f',
          'P1l',
          'P2l',
          'P3l',
          'xEPS',
          'Chla',
          'eiPI(iiP1)',
          'eiPI(iiP2)',
          'eiPI(iiP3)',
          'qlPc(iiP1)',
          'qlPc(iiP2)',
          'qlPc(iiP3)',
          'qnPc(iiP1)',
          'qnPc(iiP2)',
          'qnPc(iiP3)',
          'qpPc(iiP1)',
          'qpPc(iiP2)',
          'qpPc(iiP3)',
          'sunPI(iiP1)','sunPI(iiP2)','sunPI(iiP3)',
          'EICE','jsurO2o','jsurO3c','EWIND',
          'ruPTc','ruPTn','ruPTp','exPP','resZT','resBc','netZTc',
          'rrPTo','rePTn','rePTp','ruBc','ruBn','ruBp'
/

!EOC
!-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
! MODEL  BFM - Biogeochemical Flux Model
!-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-