[1451] | 1 | <?xml version="1.0"?> |
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| 2 | <simulation> |
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[1757] | 3 | |
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| 4 | <context id="nemo"> |
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[1451] | 5 | |
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[1757] | 6 | <!-- $id$ --> |
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| 7 | |
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[1725] | 8 | <!-- |
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| 9 | ============================================================================================================ |
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| 10 | = definition of all existing variables = |
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| 11 | = DO NOT CHANGE = |
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| 12 | ============================================================================================================ |
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| 13 | --> |
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[1451] | 14 | |
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[1725] | 15 | <field_definition level="1" prec="4" operation="ave(X)" enabled=".TRUE."> <!-- time step automaticaly defined --> |
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[1679] | 16 | |
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| 17 | <!-- ptrc on T grid --> |
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[2528] | 18 | |
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| 19 | <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> |
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[3295] | 20 | <field id="DIC" description="Dissolved inorganic Concentration" unit="mmol/m3" /> |
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[3463] | 21 | <field id="Alkalini" description="Total Alkalinity Concentration" unit="mmol/m3" /> |
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[3295] | 22 | <field id="O2" description="Oxygen Concentration" unit="mmol/m3" /> |
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| 23 | <field id="CaCO3" description="Calcite Concentration" unit="mmol/m3" /> |
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| 24 | <field id="PO4" description="Phosphate Concentration" unit="mmol/m3" /> |
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| 25 | <field id="POC" description="Small organic carbon Concentration" unit="mmol/m3" /> |
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| 26 | <field id="Si" description="Silicate Concentration" unit="mmol/m3" /> |
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| 27 | <field id="PHY" description="Nanophytoplankton Concentration" unit="mmol/m3" /> |
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| 28 | <field id="ZOO" description="Microzooplankton Concentration" unit="mmol/m3" /> |
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| 29 | <field id="DOC" description="Dissolved organic Concentration" unit="mmol/m3" /> |
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| 30 | <field id="PHY2" description="Diatoms Concentration" unit="mmol/m3" /> |
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| 31 | <field id="ZOO2" description="Mesozooplankton Concentration" unit="mmol/m3" /> |
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| 32 | <field id="DSi" description="Diatoms Silicate Concentration" unit="mmol/m3" /> |
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| 33 | <field id="Fer" description="Dissolved Iron Concentration" unit="mmol/m3" /> |
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| 34 | <field id="BFe" description="Big iron particles Concentration" unit="mmol/m3" /> |
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| 35 | <field id="GOC" description="Big organic carbon Concentration" unit="mmol/m3" /> |
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| 36 | <field id="SFe" description="Small iron particles Concentration" unit="mmol/m3" /> |
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| 37 | <field id="DFe" description="Diatoms iron Concentration" unit="mmol/m3" /> |
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| 38 | <field id="GSi" description="Sinking biogenic Silicate Concentration" unit="mmol/m3" /> |
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| 39 | <field id="NFe" description="Nano iron Concentration" unit="mmol/m3" /> |
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[3463] | 40 | <field id="NCHL" description="Nano chlorophyl Concentration" unit="mg/m3" /> |
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| 41 | <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mg/m3" /> |
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[3295] | 42 | <field id="NO3" description="Nitrates Concentration" unit="mmol/m3" /> |
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| 43 | <field id="NH4" description="Ammonium Concentration" unit="mmol/m3" /> |
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[1451] | 44 | </group> |
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| 45 | |
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[2528] | 46 | <!-- diad on T grid : variables available with key_diatrc --> |
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[1679] | 47 | |
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| 48 | <group id="diad_T" axis_ref="none" grid_ref="grid_T"> |
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[3463] | 49 | <field id="PH" description="PH" unit="-" axis_ref="deptht" /> |
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| 50 | <field id="CO3" description="Bicarbonates" unit="mol/m3" axis_ref="deptht" /> |
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| 51 | <field id="CO3sat" description="CO3 saturation" unit="mol/m3" axis_ref="deptht" /> |
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| 52 | <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> |
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| 53 | <field id="PPPHY" description="Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> |
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| 54 | <field id="PPPHY2" description="Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> |
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| 55 | <field id="PPNEWN" description="New Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> |
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| 56 | <field id="PPNEWD" description="New Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> |
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| 57 | <field id="PBSi" description="Primary production of Si diatoms" unit="molSi/m3/s" axis_ref="deptht" /> |
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| 58 | <field id="PFeN" description="Primary production of nano iron" unit="molFe/m3/s" axis_ref="deptht" /> |
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| 59 | <field id="PFeD" description="Primary production of diatoms iron" unit="molFe/m3/s" axis_ref="deptht" /> |
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| 60 | <field id="xfracal" description="Calcifying fraction" unit="-" axis_ref="deptht" /> |
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| 61 | <field id="PCAL" description="Calcite production" unit="molC/m3/s" axis_ref="deptht" /> |
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| 62 | <field id="DCAL" description="Calcite dissolution" unit="molC/m3/s" axis_ref="deptht" /> |
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| 63 | <field id="GRAZ1" description="Grazing by microzooplankton" unit="molC/m3/s" axis_ref="deptht" /> |
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| 64 | <field id="GRAZ2" description="Grazing by mesozooplankton" unit="molC/m3/s" axis_ref="deptht" /> |
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| 65 | <field id="REMIN" description="Oxic remineralization of OM" unit="molC/m3/s" axis_ref="deptht" /> |
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| 66 | <field id="DENIT" description="Anoxic remineralization of OM" unit="molC/m3/s" axis_ref="deptht" /> |
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| 67 | <field id="Nfix" description="Nitrogen fixation" unit="molN/m3/s" axis_ref="deptht" /> |
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| 68 | <field id="Mumax" description="Maximum growth rate" unit="s-1" axis_ref="deptht" /> |
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| 69 | <field id="MuN" description="Realized growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> |
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| 70 | <field id="MuD" description="Realized growth rate for diatomes" unit="s-1" axis_ref="deptht" /> |
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| 71 | <field id="LNnut" description="Nutrient limitation term in Nanophyto" unit="-" axis_ref="deptht" /> |
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| 72 | <field id="LDnut" description="Nutrient limitation term in Diatoms" unit="-" axis_ref="deptht" /> |
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| 73 | <field id="LNFe" description="Iron limitation term in Nanophyto" unit="-" axis_ref="deptht" /> |
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| 74 | <field id="LDFe" description="Iron limitation term in Diatoms" unit="-" axis_ref="deptht" /> |
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| 75 | <field id="LNlight" description="Light limitation term in Nanophyto" unit="-" axis_ref="deptht" /> |
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| 76 | <field id="LDlight" description="Light limitation term in Diatoms" unit="-" axis_ref="deptht" /> |
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| 77 | <field id="Fe2" description="Iron II concentration" unit="nmol/L" axis_ref="deptht" /> |
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| 78 | <field id="Fe3" description="Iron III concentration" unit="nmol/L" axis_ref="deptht" /> |
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| 79 | <field id="FeL1" description="Complexed Iron concentration with L1" unit="nmol/L" axis_ref="deptht" /> |
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| 80 | <field id="FeL2" description="Complexed Iron concentration with L2" unit="nmol/L" axis_ref="deptht" /> |
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| 81 | <field id="FeP" description="Precipitated Iron III" unit="nmol/L" axis_ref="deptht" /> |
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| 82 | <field id="TL1" description="Total L1 concentration" unit="nmol/L" axis_ref="deptht" /> |
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| 83 | <field id="TL2" description="Total L2 concentration" unit="nmol/L" axis_ref="deptht" /> |
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| 84 | <field id="pdust" description="dust concentration" unit="g/L" /> |
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| 85 | <field id="Totlig" description="Total ligand concentation" unit="nmol/L" axis_ref="deptht" /> |
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| 86 | <field id="Biron" description="Bioavailable iron" unit="nmol/L" axis_ref="deptht" /> |
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| 87 | <field id="Sdenit" description="Nitrate reduction in the sediments" unit="molN/m2/s" /> |
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| 88 | <field id="Ironice" description="Iron input/uptake due to sea ice" unit="molFe/m2/s" /> |
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| 89 | <field id="HYDR" description="Iron input from hydrothemal vents" unit="molFe/m2/s" /> |
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| 90 | <field id="EPC100" description="Export of carbon particles at 100 m" unit="mol/m2/s" /> |
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| 91 | <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="mol/m2/s" /> |
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| 92 | <field id="EPSI100" description="Export of Silicate at 100 m" unit="mol/m2/s" /> |
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| 93 | <field id="EPCAL100" description="Export of Calcite at 100 m" unit="mol/m2/s" /> |
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| 94 | <field id="Cflx" description="DIC flux" unit="mol/m2/s" /> |
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| 95 | <field id="Oflx" description="Oxygen flux" unit="mol/m2/s" /> |
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| 96 | <field id="Kg" description="Gas transfer" unit="mol/m2/s/uatm" /> |
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| 97 | <field id="Dpco2" description="Delta CO2" unit="uatm" /> |
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| 98 | <field id="Dpo2" description="Delta O2" unit="uatm" /> |
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| 99 | <field id="Heup" description="Euphotic layer depth" unit="m" /> |
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| 100 | <field id="Irondep" description="Iron deposition from dust" unit="mol/m2/s" /> |
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| 101 | <field id="Ironsed" description="Iron deposition from sediment" unit="mol/m2/s" axis_ref="deptht" /> |
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[3447] | 102 | </group> |
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[1451] | 103 | |
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[1738] | 104 | <!-- scalar --> |
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| 105 | |
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| 106 | <group id="scalar" axis_ref="none" grid_ref="scalarpoint" zoom_ref="1point" > |
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| 107 | </group> |
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[1679] | 108 | |
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[1451] | 109 | </field_definition> |
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| 110 | |
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[1725] | 111 | <!-- |
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| 112 | ============================================================================================================ |
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| 113 | = output files definition = |
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| 114 | = Define your own files = |
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| 115 | = put the variables you want... = |
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| 116 | ============================================================================================================ |
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| 117 | --> |
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[1451] | 118 | |
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| 119 | <file_definition output_level="10" enabled=".TRUE."> |
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[1750] | 120 | |
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| 121 | <group id="1d" output_freq="86400" output_level="10" enabled=".TRUE."> <!-- 1d files --> |
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| 122 | </group> |
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[1451] | 123 | |
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[1750] | 124 | <group id="5d" output_freq="432000" output_level="10" enabled=".TRUE."> <!-- 5d files --> |
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| 125 | </group> |
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[1451] | 126 | |
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[1750] | 127 | <group id="1m" output_freq="-1" output_level="10" enabled=".TRUE."> <!-- real monthly files --> |
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| 128 | |
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[3447] | 129 | <file id="1m_ptrc_T" name="auto" description="pisces sms variables" > |
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[1750] | 130 | <field ref="DIC" /> |
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| 131 | <field ref="Alkalini" /> |
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| 132 | <field ref="O2" /> |
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| 133 | <field ref="CaCO3" /> |
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| 134 | <field ref="PO4" /> |
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| 135 | <field ref="POC" /> |
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| 136 | <field ref="Si" /> |
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| 137 | <field ref="PHY" /> |
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| 138 | <field ref="ZOO" /> |
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| 139 | <field ref="DOC" /> |
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| 140 | <field ref="PHY2" /> |
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| 141 | <field ref="ZOO2" /> |
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[3295] | 142 | <field ref="DSi" /> |
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[1750] | 143 | <field ref="Fer" /> |
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| 144 | <field ref="BFe" /> |
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| 145 | <field ref="GOC" /> |
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| 146 | <field ref="SFe" /> |
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| 147 | <field ref="DFe" /> |
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[3295] | 148 | <field ref="GSi" /> |
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[1750] | 149 | <field ref="NFe" /> |
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| 150 | <field ref="NCHL" /> |
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| 151 | <field ref="DCHL" /> |
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| 152 | <field ref="NO3" /> |
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| 153 | <field ref="NH4" /> |
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| 154 | </file> |
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| 155 | |
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[3447] | 156 | <file id="1m_diad_T" name="auto" description="additional pisces diagnostics" > |
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[1750] | 157 | <field ref="PH" /> |
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| 158 | <field ref="CO3" /> |
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| 159 | <field ref="CO3sat" /> |
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[3447] | 160 | <field ref="PAR" /> |
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[1750] | 161 | <field ref="PPPHY" /> |
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| 162 | <field ref="PPPHY2" /> |
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| 163 | <field ref="PPNEWN" /> |
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| 164 | <field ref="PPNEWD" /> |
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| 165 | <field ref="PBSi" /> |
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| 166 | <field ref="PFeN" /> |
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| 167 | <field ref="PFeD" /> |
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[3447] | 168 | <field ref="xfracal" /> |
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[1837] | 169 | <field ref="PCAL" /> |
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| 170 | <field ref="DCAL" /> |
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[3447] | 171 | <field ref="GRAZ1" /> |
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| 172 | <field ref="GRAZ2" /> |
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[1837] | 173 | <field ref="EPC100" /> |
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| 174 | <field ref="EPFE100" /> |
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| 175 | <field ref="EPSI100" /> |
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| 176 | <field ref="EPCAL100" /> |
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[1750] | 177 | <field ref="Cflx" /> |
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| 178 | <field ref="Oflx" /> |
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| 179 | <field ref="Kg" /> |
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| 180 | <field ref="Dpco2" /> |
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| 181 | <field ref="Dpo2" /> |
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| 182 | <field ref="Heup" /> |
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| 183 | <field ref="Irondep" /> |
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[3447] | 184 | <field ref="Ironsed" /> |
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| 185 | <field ref="Ironice" /> |
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[1750] | 186 | <field ref="Nfix" /> |
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[3447] | 187 | <field ref="MuN" /> |
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| 188 | <field ref="MuD" /> |
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| 189 | <field ref="LNnut" /> |
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| 190 | <field ref="LDnut" /> |
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| 191 | <field ref="LNFe" /> |
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| 192 | <field ref="LDFe" /> |
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| 193 | <field ref="LNlight" /> |
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| 194 | <field ref="LDlight" /> |
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| 195 | <field ref="pdust" /> |
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| 196 | <field ref="Fe2" /> |
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| 197 | <field ref="Fe3" /> |
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| 198 | <field ref="FeL1" /> |
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| 199 | <field ref="FeL2" /> |
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| 200 | <field ref="FeP" /> |
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| 201 | <field ref="TL1" /> |
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| 202 | <field ref="TL2" /> |
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| 203 | <field ref="Sdenit" /> |
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| 204 | <field ref="Totlig" /> |
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[1750] | 205 | </file> |
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[3447] | 206 | </group> |
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[1750] | 207 | |
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[3447] | 208 | <group id="2m" output_freq="-2" output_level="10" enabled=".TRUE."> <!-- real 2m files --> |
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[1750] | 209 | </group> |
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| 210 | |
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[3447] | 211 | <group id="3m" output_freq="-3" output_level="10" enabled=".TRUE."> <!-- real 3m files --> |
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| 212 | </group> |
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| 213 | |
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| 214 | <group id="4m" output_freq="-4" output_level="10" enabled=".TRUE."> <!-- real 4m files --> |
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| 215 | </group> |
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| 216 | |
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| 217 | <group id="6m" output_freq="-6" output_level="10" enabled=".TRUE."> <!-- real 6m files --> |
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| 218 | </group> |
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| 219 | |
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| 220 | <group id="1y" output_freq="-12" output_level="10" enabled=".TRUE."> <!-- real yearly files --> |
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| 221 | </group> |
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| 222 | |
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[1750] | 223 | <group id="2y" output_freq="-24" output_level="10" enabled=".TRUE."> <!-- real 2y files --> |
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| 224 | </group> |
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| 225 | |
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| 226 | <group id="5y" output_freq="-60" output_level="10" enabled=".TRUE."> <!-- real 5y files --> |
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| 227 | </group> |
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| 228 | |
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| 229 | <group id="10y" output_freq="-120" output_level="10" enabled=".TRUE."> <!-- real 10y files --> |
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| 230 | </group> |
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| 231 | |
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[1451] | 232 | </file_definition> |
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| 233 | |
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[1725] | 234 | <!-- |
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| 235 | ============================================================================================================ |
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| 236 | = grid definition = |
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| 237 | = DO NOT CHANGE = |
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| 238 | ============================================================================================================ |
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| 239 | --> |
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[1451] | 240 | |
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| 241 | <axis_definition> |
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[1682] | 242 | <axis id="deptht" description="Vertical T levels" unit="m" positive=".false." /> |
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| 243 | <axis id="depthu" description="Vertical U levels" unit="m" positive=".false." /> |
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| 244 | <axis id="depthv" description="Vertical V levels" unit="m" positive=".false." /> |
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| 245 | <axis id="depthw" description="Vertical W levels" unit="m" positive=".false." /> |
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[1451] | 246 | <axis id="none" description="axe non defini" unit="none" size="1" /> |
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| 247 | </axis_definition> |
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| 248 | |
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| 249 | <grid_definition> |
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| 250 | <grid id="grid_T" description="grid T" /> |
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| 251 | <grid id="grid_U" description="grid U" /> |
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| 252 | <grid id="grid_V" description="grid V" /> |
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| 253 | <grid id="grid_W" description="grid W" /> |
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[1738] | 254 | <grid id="scalarpoint" description="scalar" > |
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| 255 | <zoom id="1point" ibegin="1" jbegin="1" ni="1" nj="1" /> |
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| 256 | </grid> |
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[1451] | 257 | </grid_definition> |
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| 258 | |
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| 259 | </context> |
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| 260 | |
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| 261 | </simulation> |
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