1 | MODULE trcnam_lobster |
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2 | !!====================================================================== |
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3 | !! *** MODULE trcnam_lobster *** |
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4 | !! TOP : initialisation of some run parameters for LOBSTER bio-model |
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5 | !!====================================================================== |
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6 | !! History : 2.0 ! 2007-12 (C. Ethe, G. Madec) from trcnam.lobster1.h90 |
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7 | !!---------------------------------------------------------------------- |
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8 | #if defined key_lobster |
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9 | !!---------------------------------------------------------------------- |
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10 | !! 'key_lobster' : LOBSTER bio-model |
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11 | !!---------------------------------------------------------------------- |
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12 | !! trc_nam_lobster : LOBSTER model namelist read |
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13 | !!---------------------------------------------------------------------- |
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14 | USE oce_trc ! Ocean variables |
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15 | USE par_trc ! TOP parameters |
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16 | USE trc ! TOP variables |
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17 | USE trdmod_trc_oce , ONLY : lk_trdmld_trc ! tracers trend flag |
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18 | USE sms_lobster ! sms trends |
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19 | USE iom ! I/O manager |
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20 | |
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21 | IMPLICIT NONE |
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22 | PRIVATE |
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23 | |
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24 | PUBLIC trc_nam_lobster ! called by trcnam.F90 module |
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25 | |
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26 | !!---------------------------------------------------------------------- |
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27 | !! NEMO/TOP 3.3 , NEMO Consortium (2010) |
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28 | !! $Id$ |
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29 | !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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30 | !!---------------------------------------------------------------------- |
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31 | |
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32 | CONTAINS |
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33 | |
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34 | SUBROUTINE trc_nam_lobster |
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35 | !!---------------------------------------------------------------------- |
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36 | !! *** trc_nam_lobster *** |
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37 | !! |
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38 | !! ** Purpose : read LOBSTER namelist |
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39 | !! |
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40 | !! ** input : file 'namelist.trc.sms' containing the following |
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41 | !! namelist: natbio, natopt, and natdbi ("key_diabio") |
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42 | !!---------------------------------------------------------------------- |
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43 | INTEGER :: numnatl |
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44 | !! |
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45 | INTEGER :: jl, jn |
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46 | TYPE(DIAG), DIMENSION(jp_lobster_2d ) :: lobdia2d |
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47 | TYPE(DIAG), DIMENSION(jp_lobster_3d ) :: lobdia3d |
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48 | TYPE(DIAG), DIMENSION(jp_lobster_trd) :: lobdiabio |
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49 | |
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50 | NAMELIST/namlobphy/ apmin, tmumax, rgamma, fphylab, tmmaxp, tmminp, & |
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51 | & rcchl, aki, toptp |
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52 | NAMELIST/namlobnut/ anmin, akno3, aknh4, taunn, psinut |
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53 | NAMELIST/namlobzoo/ azmin, eggzoo, rgz, rppz, taus, aks, rpnaz, & |
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54 | & rdnaz, tauzn, fzoolab, fdbod, tmmaxz, tmminz |
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55 | NAMELIST/namlobdet/ admin, taudn, fdetlab, vsed |
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56 | NAMELIST/namlobdom/ taudomn |
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57 | NAMELIST/namlobsed/ sedlam, sedlostpoc |
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58 | NAMELIST/namlobrat/ redf, reddom, slopet, tmaxr, tminr, xhr, & |
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59 | & filmax, toptgz, tmaxgz, anumin, afdmin |
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60 | |
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61 | NAMELIST/namlobopt/ xkg0, xkr0, xkgp, xkrp, xlg, xlr, rpig |
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62 | NAMELIST/namlobdia/ lobdia3d, lobdia2d ! additional diagnostics |
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63 | NAMELIST/namlobdbi/ lobdiabio |
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64 | !!---------------------------------------------------------------------- |
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65 | |
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66 | IF(lwp) WRITE(numout,*) |
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67 | IF(lwp) WRITE(numout,*) ' trc_nam_lobster : read LOBSTER namelists' |
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68 | IF(lwp) WRITE(numout,*) ' ~~~~~~~~~~~~~~~' |
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69 | |
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70 | ! ! Open the namelist file |
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71 | ! ! ---------------------- |
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72 | CALL ctl_opn( numnatl, 'namelist_lobster', 'OLD', 'FORMATTED', 'SEQUENTIAL', 1, numout, .FALSE. ) |
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73 | |
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74 | ! namlobphy : parameters for phytoplankton |
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75 | apmin = 0. |
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76 | tmumax = 0. |
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77 | rgamma = 0. |
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78 | fphylab = 0. |
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79 | tmmaxp = 0. |
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80 | tmminp = 0. |
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81 | rcchl = 0. |
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82 | aki = 0. |
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83 | toptp = 0. |
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84 | |
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85 | REWIND( numnatl ) |
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86 | READ ( numnatl, namlobphy ) |
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87 | |
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88 | IF(lwp) THEN |
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89 | WRITE(numout,*) ' Namelist namlobphy' |
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90 | WRITE(numout,*) ' minimum phytoplancton concentration apmin =', apmin |
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91 | WRITE(numout,*) ' phyto max growth rate tmumax =', 86400 * tmumax, ' d' |
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92 | WRITE(numout,*) ' phytoplankton exudation fraction rgamma =', rgamma |
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93 | WRITE(numout,*) ' NH4 fraction of phytoplankton exsudation fphylab =', fphylab |
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94 | WRITE(numout,*) ' maximal phyto mortality rate tmmaxp =', 86400 * tmmaxp |
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95 | WRITE(numout,*) ' minimal phyto mortality rate tmminp =', 86400 * tmminp |
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96 | WRITE(numout,*) ' carbone/chlorophyl ratio rcchl =', rcchl |
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97 | WRITE(numout,*) ' light hlaf saturation constant aki =', aki |
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98 | WRITE(numout,*) ' optimal photosynthesis temperature toptp =', toptp |
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99 | WRITE(numout,*) ' ' |
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100 | ENDIF |
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101 | |
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102 | ! namlobnut : parameters for nutrients |
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103 | anmin = 0. |
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104 | psinut = 0. |
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105 | akno3 = 0. |
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106 | aknh4 = 0. |
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107 | taunn = 0. |
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108 | |
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109 | REWIND( numnatl ) |
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110 | READ ( numnatl, namlobnut ) |
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111 | IF(lwp) THEN |
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112 | WRITE(numout,*) ' Namelist namlobnut' |
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113 | WRITE(numout,*) ' minimum nutrients concentration anmin =', anmin |
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114 | WRITE(numout,*) ' half-saturation nutrient for no3 uptake akno3 =', akno3 |
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115 | WRITE(numout,*) ' half-saturation nutrient for nh4 uptake aknh4 =', aknh4 |
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116 | WRITE(numout,*) ' nitrification rate taunn =', taunn |
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117 | WRITE(numout,*) ' inhibition of no3 uptake by nh4 psinut =', psinut |
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118 | WRITE(numout,*) ' ' |
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119 | ENDIF |
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120 | |
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121 | ! namlobzoo : parameters for zooplankton |
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122 | azmin = 0. |
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123 | rgz = 0. |
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124 | rppz = 0. |
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125 | taus = 0. |
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126 | aks = 0. |
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127 | rpnaz = 0. |
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128 | rdnaz = 0. |
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129 | eggzoo = 0. |
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130 | tauzn = 0. |
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131 | tmmaxz = 0. |
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132 | tmminz = 0. |
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133 | fzoolab = 0. |
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134 | fdbod = 0. |
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135 | |
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136 | REWIND( numnatl ) |
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137 | READ ( numnatl, namlobzoo ) |
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138 | |
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139 | IF(lwp) THEN |
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140 | WRITE(numout,*) ' Namelist namlobzoo' |
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141 | WRITE(numout,*) ' minimum zooplancton concentration azmin =', azmin |
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142 | WRITE(numout,*) ' minimum for zoo concentration eggzoo =', eggzoo |
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143 | WRITE(numout,*) ' widtht of zoo temperature FUNCTION rgz =', rgz |
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144 | WRITE(numout,*) ' zoo preference for phyto rppz =', rppz |
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145 | WRITE(numout,*) ' maximal zoo grazing rate taus =', 86400 * taus, ' d' |
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146 | WRITE(numout,*) ' half saturation constant for zoo food aks =', aks |
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147 | WRITE(numout,*) ' non-assimilated phyto by zoo rpnaz =', rpnaz |
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148 | WRITE(numout,*) ' non-assimilated detritus by zoo rdnaz =', rdnaz |
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149 | WRITE(numout,*) ' zoo specific excretion rate tauzn =', 86400 * tauzn |
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150 | WRITE(numout,*) ' maximal zoo mortality rate tmmaxz =', 86400 * tmmaxz |
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151 | WRITE(numout,*) ' minimal zoo mortality rate tmminz =', 86400 * tmminz |
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152 | WRITE(numout,*) ' NH4 fraction of zooplankton excretion fzoolab =', fzoolab |
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153 | WRITE(numout,*) ' Zooplankton mortality fraction that goes to detritus fdbod =', fdbod |
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154 | WRITE(numout,*) ' ' |
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155 | ENDIF |
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156 | |
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157 | ! namlobdet : parameters for detritus |
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158 | admin = 0. |
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159 | taudn = 0. |
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160 | vsed = 0. |
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161 | fdetlab = 0. |
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162 | |
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163 | REWIND( numnatl ) |
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164 | READ ( numnatl, namlobdet ) |
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165 | |
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166 | IF(lwp) THEN |
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167 | WRITE(numout,*) ' Namelist namlobdet' |
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168 | WRITE(numout,*) ' minimum detritus concentration admin =', admin |
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169 | WRITE(numout,*) ' detrital breakdown rate taudn =', 86400 * taudn , ' d' |
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170 | WRITE(numout,*) ' detritus sedimentation speed vsed =', 86400 * vsed , ' d' |
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171 | WRITE(numout,*) ' NH4 fraction of detritus dissolution fdetlab =', fdetlab |
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172 | WRITE(numout,*) ' ' |
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173 | ENDIF |
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174 | |
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175 | ! namlobdom : parameters for DOM |
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176 | taudomn = 0. |
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177 | |
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178 | REWIND( numnatl ) |
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179 | READ ( numnatl, namlobdom ) |
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180 | |
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181 | IF(lwp) THEN |
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182 | WRITE(numout,*) ' Namelist namlobdom' |
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183 | WRITE(numout,*) ' dom remineralisation rate taudomn =', taudomn |
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184 | WRITE(numout,*) ' ' |
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185 | ENDIF |
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186 | |
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187 | ! namlobsed : parameters from aphotic layers to sediment |
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188 | sedlam = 0. |
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189 | sedlostpoc = 0. |
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190 | |
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191 | REWIND( numnatl ) |
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192 | READ ( numnatl, namlobsed ) |
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193 | |
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194 | IF(lwp) THEN |
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195 | WRITE(numout,*) ' Namelist namlobsed' |
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196 | WRITE(numout,*) ' time coeff of POC in sediments sedlam =', sedlam |
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197 | WRITE(numout,*) ' Sediment geol loss for POC sedlostpoc=', sedlostpoc |
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198 | WRITE(numout,*) ' ' |
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199 | ENDIF |
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200 | |
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201 | ! namlobrat : general coefficient |
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202 | redf = 0. |
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203 | reddom = 0. |
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204 | slopet = 0. |
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205 | tmaxr = 1./( 4.*rday)*0. |
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206 | tminr = 1./(24.*30.*rday)*0. |
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207 | xhr = 0. |
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208 | filmax = 0. |
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209 | toptgz = 0. |
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210 | tmaxgz = 0. |
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211 | anumin = 0. |
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212 | afdmin = 0. |
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213 | |
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214 | REWIND( numnatl ) |
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215 | READ ( numnatl, namlobrat ) |
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216 | |
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217 | IF(lwp) THEN |
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218 | WRITE(numout,*) ' Namelist namlobrat' |
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219 | WRITE(numout,*) ' redfield ratio c:n for phyto redf =', redf |
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220 | WRITE(numout,*) ' redfield ratio c:n for DOM reddom =', reddom |
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221 | WRITE(numout,*) ' van t hoff coefficient slopet =', slopet |
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222 | WRITE(numout,*) ' maximum damping for d z or p tmaxr =', tmaxr |
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223 | WRITE(numout,*) ' damping-remineralisation rate tminr =', tminr |
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224 | WRITE(numout,*) ' coeff for martin''s remineralistion xhr =', xhr |
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225 | WRITE(numout,*) ' maximal mass clearance rate for zoo filmax =', filmax |
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226 | WRITE(numout,*) ' optimal temperature for zoo growth toptgz =', toptgz |
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227 | WRITE(numout,*) ' maximal temperature for zoo growth tmaxgz =', tmaxgz |
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228 | WRITE(numout,*) ' nutrient threshold for phyto mort anumin =', anumin |
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229 | WRITE(numout,*) ' food threshold for zoo mort afdmin =', afdmin |
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230 | WRITE(numout,*) ' ' |
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231 | ENDIF |
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232 | |
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233 | |
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234 | ! namlobopt : optical parameters |
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235 | xkg0 = 0. |
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236 | xkr0 = 0. |
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237 | xkgp = 0. |
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238 | xkrp = 0. |
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239 | xlg = 0. |
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240 | xlr = 0. |
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241 | rpig = 0. |
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242 | |
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243 | REWIND( numnatl ) |
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244 | READ ( numnatl, namlobopt ) |
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245 | |
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246 | IF(lwp) THEN |
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247 | WRITE(numout,*) |
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248 | WRITE(numout,*) ' Namelist namlobopt' |
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249 | WRITE(numout,*) ' green water absorption coeff xkg0 = ', xkg0 |
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250 | WRITE(numout,*) ' red water absorption coeff xkr0 = ', xkr0 |
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251 | WRITE(numout,*) ' pigment red absorption coeff xkrp = ', xkrp |
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252 | WRITE(numout,*) ' pigment green absorption coeff xkgp = ', xkgp |
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253 | WRITE(numout,*) ' green chl exposant xlg = ', xlg |
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254 | WRITE(numout,*) ' red chl exposant xlr = ', xlr |
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255 | WRITE(numout,*) ' chla/chla+phea ratio rpig = ', rpig |
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256 | WRITE(numout,*) ' ' |
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257 | ENDIF |
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258 | |
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259 | ! |
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260 | IF( .NOT.lk_iomput .AND. ln_diatrc ) THEN |
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261 | ! |
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262 | ! Namelist namlobdia |
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263 | ! ------------------- |
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264 | DO jl = 1, jp_lobster_2d |
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265 | WRITE(lobdia2d(jl)%sname,'("2D_",I1)') jl ! short name |
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266 | WRITE(lobdia2d(jl)%lname,'("2D DIAGNOSTIC NUMBER ",I2)') jl ! long name |
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267 | lobdia2d(jl)%units = ' ' ! units |
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268 | END DO |
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269 | ! ! 3D output arrays |
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270 | DO jl = 1, jp_lobster_3d |
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271 | WRITE(lobdia3d(jl)%sname,'("3D_",I1)') jl ! short name |
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272 | WRITE(lobdia3d(jl)%lname,'("3D DIAGNOSTIC NUMBER ",I2)') jl ! long name |
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273 | lobdia3d(jl)%units = ' ' ! units |
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274 | END DO |
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275 | |
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276 | REWIND( numnatl ) ! read natrtd |
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277 | READ ( numnatl, namlobdia ) |
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278 | |
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279 | DO jl = 1, jp_lobster_2d |
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280 | jn = jp_lob0_2d + jl - 1 |
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281 | ctrc2d(jn) = lobdia2d(jl)%sname |
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282 | ctrc2l(jn) = lobdia2d(jl)%lname |
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283 | ctrc2u(jn) = lobdia2d(jl)%units |
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284 | END DO |
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285 | |
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286 | DO jl = 1, jp_lobster_3d |
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287 | jn = jp_lob0_3d + jl - 1 |
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288 | ctrc3d(jn) = lobdia3d(jl)%sname |
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289 | ctrc3l(jn) = lobdia3d(jl)%lname |
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290 | ctrc3u(jn) = lobdia3d(jl)%units |
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291 | END DO |
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292 | |
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293 | IF(lwp) THEN ! control print |
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294 | WRITE(numout,*) |
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295 | WRITE(numout,*) ' Namelist : natadd' |
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296 | DO jl = 1, jp_lobster_3d |
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297 | jn = jp_lob0_3d + jl - 1 |
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298 | WRITE(numout,*) ' 3d diag nb : ', jn, ' short name : ', ctrc3d(jn), & |
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299 | & ' long name : ', ctrc3l(jn), ' unit : ', ctrc3u(jn) |
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300 | END DO |
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301 | WRITE(numout,*) ' ' |
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302 | |
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303 | DO jl = 1, jp_lobster_2d |
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304 | jn = jp_lob0_2d + jl - 1 |
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305 | WRITE(numout,*) ' 2d diag nb : ', jn, ' short name : ', ctrc2d(jn), & |
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306 | & ' long name : ', ctrc2l(jn), ' unit : ', ctrc2u(jn) |
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307 | END DO |
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308 | WRITE(numout,*) ' ' |
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309 | ENDIF |
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310 | ! |
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311 | ENDIF |
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312 | |
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313 | IF( ( .NOT.lk_iomput .AND. ln_diabio ) .OR. lk_trdmld_trc ) THEN |
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314 | ! |
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315 | ! Namelist namlobdbi |
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316 | ! ------------------- |
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317 | DO jl = 1, jp_lobster_trd |
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318 | IF( jl < 10 ) THEN ; WRITE (lobdiabio(jl)%sname,'("BIO_",I1)') jl ! short name |
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319 | ELSEIF (jl < 100 ) THEN ; WRITE (lobdiabio(jl)%sname,'("BIO_",I2)') jl |
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320 | ELSE ; WRITE (lobdiabio(jl)%sname,'("BIO_",I3)') jl |
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321 | ENDIF |
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322 | WRITE(lobdiabio(jl)%lname,'("BIOLOGICAL TREND NUMBER ",I2)') jl ! long name |
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323 | lobdiabio(jl)%units = 'mmoleN/m3/s ' ! units |
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324 | END DO |
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325 | |
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326 | REWIND( numnatl ) |
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327 | READ ( numnatl, namlobdbi ) |
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328 | |
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329 | DO jl = 1, jp_lobster_trd |
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330 | jn = jp_lob0_trd + jl - 1 |
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331 | ctrbio(jl) = lobdiabio(jl)%sname |
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332 | ctrbil(jl) = lobdiabio(jl)%lname |
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333 | ctrbiu(jl) = lobdiabio(jl)%units |
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334 | END DO |
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335 | |
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336 | IF(lwp) THEN ! control print |
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337 | WRITE(numout,*) |
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338 | WRITE(numout,*) ' Namelist : namlobdbi' |
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339 | DO jl = 1, jp_lobster_trd |
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340 | jn = jp_lob0_trd + jl - 1 |
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341 | WRITE(numout,*) ' biological trend No : ', jn, ' short name : ', ctrbio(jn), & |
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342 | & ' long name : ', ctrbio(jn), ' unit : ', ctrbio(jn) |
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343 | END DO |
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344 | WRITE(numout,*) ' ' |
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345 | END IF |
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346 | ! |
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347 | END IF |
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348 | ! |
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349 | END SUBROUTINE trc_nam_lobster |
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350 | |
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351 | #else |
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352 | !!---------------------------------------------------------------------- |
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353 | !! Dummy module : No LOBSTER |
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354 | !!---------------------------------------------------------------------- |
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355 | CONTAINS |
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356 | SUBROUTINE trc_nam_lobster ! Empty routine |
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357 | END SUBROUTINE trc_nam_lobster |
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358 | #endif |
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359 | |
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360 | !!====================================================================== |
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361 | END MODULE trcnam_lobster |
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