1 | !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> |
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2 | !! LOBSTER : 1 - biological parameters for phytoplankton (namlobphy) |
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3 | !! namelists 2 - biological parameters for nutrients (namlobnut) |
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4 | !! 3 - biological parameters for zooplankton (namlobzoo) |
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5 | !! 4 - biological parameters for detritus (namlobdet) |
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6 | !! 5 - biological parameters for DOM (namlobdom) |
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7 | !! 6 - parameters from aphotic layers to sediment (namlobsed) |
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8 | !! 7 - general coefficients (namlobrat) |
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9 | !! 8 - optical parameters (namlobopt) |
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10 | !! 9 - additional 2D/3D diagnostics (namlobdia) |
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11 | !! 10 - biological diagnostics trends (namlobdbi) |
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12 | !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> |
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13 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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14 | &namlobphy ! biological parameters for phytoplankton |
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15 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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16 | tmumax = 1.21e-5 ! maximal phytoplankton growth rate [s-1] |
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17 | rgamma = 0.05 ! phytoplankton exudation fraction [%] |
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18 | fphylab = 0.75 ! NH4 fraction of phytoplankton exsudation |
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19 | tmminp = 5.8e-7 ! minimal phytoplancton mortality rate [0.05/86400 s-1=20 days] |
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20 | aki = 33. ! light photosynthesis half saturation constant[W/m2] |
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21 | / |
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22 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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23 | &namlobnut ! biological parameters for nutrients |
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24 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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25 | akno3 = 0.7 ! nitrate limitation half-saturation value [mmol/m3] |
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26 | aknh4 = 0.001 ! ammonium limitation half-saturation value [mmol/m3] |
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27 | taunn = 5.80e-7 ! nitrification rate [s-1] |
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28 | psinut = 3. ! inhibition of nitrate uptake by ammonium |
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29 | / |
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30 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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31 | &namlobzoo ! biological parameters for zooplankton |
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32 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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33 | rppz = 0.8 ! zooplankton nominal preference for phytoplancton food [%] |
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34 | taus = 9.26E-6 ! specific zooplankton maximal grazing rate [s-1] |
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35 | ! ! 0.75/86400 s-1=8.680555E-6 1/86400 = 1.15e-5 |
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36 | aks = 1. ! half-saturation constant for total zooplankton grazing [mmolN.m-3] |
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37 | rpnaz = 0.3 ! non-assimilated phytoplankton by zooplancton [%] |
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38 | rdnaz = 0.3 ! non-assimilated detritus by zooplankton [%] |
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39 | tauzn = 8.1e-7 ! zooplancton specific excretion rate [0.1/86400 s-1=10 days] |
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40 | fzoolab = 0.5 ! NH4 fraction of zooplankton excretion |
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41 | fdbod = 0.5 ! zooplankton mortality fraction that goes to detritus |
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42 | tmminz = 2.31e-6 ! minimal zooplankton mortality rate [(mmolN/m3)-1 d-1] |
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43 | / |
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44 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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45 | &namlobdet ! biological parameters for detritus |
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46 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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47 | taudn = 5.80e-7 ! detritus breakdown rate [0.1/86400 s-1=10 days] |
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48 | fdetlab = 0. ! NH4 fraction of detritus dissolution |
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49 | / |
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50 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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51 | &namlobdom ! biological parameters for DOM |
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52 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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53 | taudomn = 6.43e-8 ! DOM breakdown rate [s-1] |
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54 | ! ! slow remineralization rate of semi-labile dom to nh4 (1 month) |
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55 | / |
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56 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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57 | &namlobsed ! parameters from aphotic layers to sediment |
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58 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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59 | sedlam = 3.86e-7 ! time coefficient of POC remineralization in sediments [s-1] |
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60 | sedlostpoc = 0. ! mass of POC lost in sediments |
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61 | vsed = 3.47e-5 ! detritus sedimentation speed [m/s] |
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62 | xhr = -0.858 ! coeff for martin''s remineralisation profile |
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63 | / |
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64 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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65 | &namlobrat ! general coefficients |
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66 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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67 | rcchl = 60. ! Carbone/Chlorophyl ratio [mgC.mgChla-1] |
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68 | redf = 6.56 ! redfield ratio (C:N) for phyto |
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69 | reddom = 6.56 ! redfield ratio (C:N) for DOM |
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70 | / |
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71 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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72 | &namlobopt ! optical parameters |
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73 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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74 | xkg0 = 0.0232 ! green absorption coefficient of water |
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75 | xkr0 = 0.225 ! red absorption coefficent of water |
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76 | xkgp = 0.074 ! green absorption coefficient of chl |
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77 | xkrp = 0.037 ! red absorption coefficient of chl |
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78 | xlg = 0.674 ! green chl exposant for absorption |
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79 | xlr = 0.629 ! red chl exposant for absorption |
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80 | rpig = 0.7 ! chla/chla+pheo ratio |
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81 | / |
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82 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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83 | &nampisdia ! additional 2D/3D tracers diagnostics |
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84 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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85 | ! ! name ! title of ! units ! |
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86 | ! ! ! the field ! ! |
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87 | pisdia2d(1) = 'TNO3PHY' , 'TNO3PHY', '-' |
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88 | pisdia2d(2) = 'TNH4PHY' , 'TNH4PHY', '-' |
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89 | pisdia2d(3) = 'TPHYDOM' , 'TPHYDOM', '-' |
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90 | pisdia2d(4) = 'TPHYNH4' , 'TPHYNH4', '-' |
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91 | pisdia2d(5) = 'TPHYZOO' , 'TPHYZOO', '-' |
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92 | pisdia2d(6) = 'TPHYDET' , 'TPHYDET', '-' |
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93 | pisdia2d(7) = 'TDETZOO' , 'TDETZOO', '-' |
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94 | pisdia2d(8) = 'TDETSED' , 'TDETSED', '-' |
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95 | pisdia2d(9) = 'TZOODET' , 'TZOODET', '-' |
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96 | pisdia2d(10) = 'TZOOBOD' , 'TZOOBOD', '-' |
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97 | pisdia2d(11) = 'TZOONH4' , 'TZOONH4', '-' |
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98 | pisdia2d(12) = 'TZOODOM' , 'TZOODOM', '-' |
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99 | pisdia2d(13) = 'TNH4NO3' , 'TNH4NO3', '-' |
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100 | pisdia2d(14) = 'TDOMNH4' , 'TDOMNH4', '-' |
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101 | pisdia2d(15) = 'TDETNH4' , 'TDETNH4', '-' |
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102 | pisdia2d(16) = 'TPHYTOT' , 'TPHYTOT', '-' |
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103 | pisdia2d(17) = 'TZOOTOT' , 'TZOOTOT', '-' |
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104 | pisdia2d(18) = 'TDETDOM' , 'TDETDOM', '-' |
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105 | pisdia2d(19) = 'SEDPOC ' , 'SEDPOC ', '-' |
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106 | pisdia3d(1) = 'FNO3PHY' , 'FNO3PHY', '-' |
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107 | pisdia3d(2) = 'FNH4PHY' , 'FNH4PHY', '-' |
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108 | pisdia3d(3) = 'FNH4NO3' , 'FNH4NO3', '-' |
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109 | / |
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110 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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111 | &nampisdbi ! biological diagnostics trends |
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112 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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113 | ! ! 2D bio diagnostics units : mmole/m2/s ("key_trdmld_trc") |
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114 | ! ! name ! title of the field ! units ! |
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115 | pisdiabio(1) = 'NO3PHY' , 'Flux from NO3 to PHY ', 'mmole/m3/s' |
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116 | pisdiabio(2) = 'NH4PHY' , 'Flux from NH4 to PHY ', 'mmole/m3/s' |
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117 | pisdiabio(3) = 'PHYNH4' , 'Flux from PHY to NH4 ', 'mmole/m3/s' |
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118 | pisdiabio(4) = 'PHYDOM' , 'Flux from PHY to DOM ', 'mmole/m3/s' |
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119 | pisdiabio(5) = 'PHYZOO' , 'Flux from PHY to ZOO ', 'mmole/m3/s' |
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120 | pisdiabio(6) = 'PHYDET' , 'Flux from PHY to DET ', 'mmole/m3/s' |
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121 | pisdiabio(7) = 'DETZOO' , 'Flux from DET to ZOO ', 'mmole/m3/s' |
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122 | pisdiabio(8) = 'DETSED' , 'Flux from DET to SED ', 'mmole/m3/s' |
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123 | pisdiabio(9) = 'ZOODET' , 'Flux from ZOO to DET ', 'mmole/m3/s' |
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124 | pisdiabio(10) = 'ZOOBOD' , 'Zooplankton closure ', 'mmole/m3/s' |
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125 | pisdiabio(11) = 'ZOONH4' , 'Flux from ZOO to NH4 ', 'mmole/m3/s' |
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126 | pisdiabio(12) = 'ZOODOM' , 'Flux from ZOO to DOM ', 'mmole/m3/s' |
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127 | pisdiabio(13) = 'NH4NO3' , 'Flux from NH4 to NO3 ', 'mmole/m3/s' |
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128 | pisdiabio(14) = 'DOMNH4' , 'Flux from DOM to NH4 ', 'mmole/m3/s' |
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129 | pisdiabio(15) = 'DETNH4' , 'Flux from DET to NH4 ', 'mmole/m3/s' |
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130 | pisdiabio(16) = 'DETDOM' , 'Flux from DET to DOM ', 'mmole/m3/s' |
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131 | pisdiabio(17) = 'SEDNO3' , 'NO3 remineralization from SED', 'mmole/m3/s' |
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132 | / |
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