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iom.F90 in branches/2013/dev_r3856_MERCATOR3_QSRMEAN24H/NEMOGCM/NEMO/OPA_SRC/IOM – NEMO

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source: branches/2013/dev_r3856_MERCATOR3_QSRMEAN24H/NEMOGCM/NEMO/OPA_SRC/IOM/iom.F90 @ 5767

Last change on this file since 5767 was 4276, checked in by cbricaud, 11 years ago
merge changes from 3856 to 4119 from trunk in dev_r3856_MERCATOR3_QSRMEAN24
Property svn:keywords set to `Id`
File size: 74.3 KB

Rev	Line
[544]	1	MODULE iom
	2	!!=====================================================================
	3	!! * MODULE iom *
	4	!! Input/Output manager : Library to read input files
	5	!!====================================================================
[3764]	6	!! History : 2.0 ! 2005-12 (J. Belier) Original code
	7	!! 2.0 ! 2006-02 (S. Masson) Adaptation to NEMO
	8	!! 3.0 ! 2007-07 (D. Storkey) Changes to iom_gettime
	9	!! 3.4 ! 2012-12 (R. Bourdalle-Badie and G. Reffray) add C1D case
[544]	10	!!--------------------------------------------------------------------
	11
	12	!!--------------------------------------------------------------------
	13	!! iom_open : open a file read only
	14	!! iom_close : close a file or all files opened by iom
	15	!! iom_get : read a field (interfaced to several routines)
[550]	16	!! iom_gettime : read the time axis cdvar in the file
[544]	17	!! iom_varid : get the id of a variable in a file
	18	!! iom_rstput : write a field in a restart file (interfaced to several routines)
	19	!!--------------------------------------------------------------------
	20	USE dom_oce ! ocean space and time domain
[3764]	21	USE c1d ! 1D vertical configuration
[3294]	22	USE flo_oce ! floats module declarations
[679]	23	USE lbclnk ! lateal boundary condition / mpp exchanges
[544]	24	USE iom_def ! iom variables definitions
	25	USE iom_ioipsl ! NetCDF format with IOIPSL library
	26	USE iom_nf90 ! NetCDF format with native NetCDF library
	27	USE iom_rstdimg ! restarts access direct format "dimg" style...
[2715]	28	USE in_out_manager ! I/O manager
	29	USE lib_mpp ! MPP library
[1412]	30	#if defined key_iomput
[1725]	31	USE sbc_oce, ONLY : nn_fsbc ! ocean space and time domain
[3770]	32	USE trc_oce, ONLY : nn_dttrc ! !: frequency of step on passive tracers
[4276]	33	USE icb_oce, ONLY : class_num ! !: iceberg classes
[1725]	34	USE domngb ! ocean space and time domain
	35	USE phycst ! physical constants
	36	USE dianam ! build name of file
[3695]	37	USE xios
[1359]	38	# endif
[4276]	39	USE ioipsl, ONLY : ju2ymds ! for calendar
[1359]	40
[544]	41	IMPLICIT NONE
[556]	42	PUBLIC ! must be public to be able to access iom_def through iom
[550]	43
[1457]	44	#if defined key_iomput
[1725]	45	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .TRUE. !: iom_put flag
[1457]	46	#else
	47	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .FALSE. !: iom_put flag
	48	#endif
[1793]	49	PUBLIC iom_init, iom_swap, iom_open, iom_close, iom_setkt, iom_varid, iom_get, iom_gettime, iom_rstput, iom_put
[2528]	50	PUBLIC iom_getatt
[544]	51
[752]	52	PRIVATE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
	53	PRIVATE iom_g0d, iom_g1d, iom_g2d, iom_g3d, iom_get_123d
[3294]	54	PRIVATE iom_p1d, iom_p2d, iom_p3d
[1412]	55	#if defined key_iomput
[4276]	56	PRIVATE iom_set_domain_attr, iom_set_axis_attr, iom_set_field_attr, iom_set_file_attr, iom_get_file_attr, iom_set_grid_attr
	57	PRIVATE set_grid, set_scalar, set_xmlatt, set_mooring, iom_update_file_name, iom_sdate
[1359]	58	# endif
[752]	59
[544]	60	INTERFACE iom_get
[550]	61	MODULE PROCEDURE iom_g0d, iom_g1d, iom_g2d, iom_g3d
[544]	62	END INTERFACE
[2528]	63	INTERFACE iom_getatt
	64	MODULE PROCEDURE iom_g0d_intatt
	65	END INTERFACE
[544]	66	INTERFACE iom_rstput
[550]	67	MODULE PROCEDURE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
[544]	68	END INTERFACE
[1359]	69	INTERFACE iom_put
[3294]	70	MODULE PROCEDURE iom_p0d, iom_p1d, iom_p2d, iom_p3d
[1359]	71	END INTERFACE
[1412]	72	#if defined key_iomput
[1359]	73	INTERFACE iom_setkt
[3695]	74	MODULE PROCEDURE xios_update_calendar
[1359]	75	END INTERFACE
	76	# endif
[544]	77
	78	!!----------------------------------------------------------------------
[2528]	79	!! NEMO/OPA 3.3 , NEMO Consortium (2010)
[1152]	80	!! $Id$
[2528]	81	!! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
[544]	82	!!----------------------------------------------------------------------
	83
	84	CONTAINS
	85
[1725]	86	SUBROUTINE iom_init
[1359]	87	!!----------------------------------------------------------------------
	88	!! * ROUTINE *
	89	!!
	90	!! ** Purpose :
	91	!!
	92	!!----------------------------------------------------------------------
[1412]	93	#if defined key_iomput
[3695]	94	TYPE(xios_time) :: dtime = xios_time(0, 0, 0, 0, 0, 0)
	95	CHARACTER(len=19) :: cldate
[3732]	96	CHARACTER(len=10) :: clname
[3695]	97	INTEGER :: ji
[1359]	98	!!----------------------------------------------------------------------
[3695]	99
[3732]	100	clname = "nemo"
	101	IF( TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(clname)
[4276]	102	# if defined key_mpp_mpi
[3732]	103	CALL xios_context_initialize(TRIM(clname), mpi_comm_opa)
[4276]	104	# else
	105	CALL xios_context_initialize(TRIM(clname), 0)
	106	# endif
[1793]	107	CALL iom_swap
[1359]	108
	109	! calendar parameters
[1725]	110	SELECT CASE ( nleapy ) ! Choose calendar for IOIPSL
[3732]	111	CASE ( 1) ; CALL xios_set_context_attr(TRIM(clname), calendar_type= "Gregorian")
	112	CASE ( 0) ; CALL xios_set_context_attr(TRIM(clname), calendar_type= "NoLeap")
	113	CASE (30) ; CALL xios_set_context_attr(TRIM(clname), calendar_type= "D360")
[1725]	114	END SELECT
[3695]	115	WRITE(cldate,"(i4.4,'-',i2.2,'-',i2.2,' 00:00:00')") nyear,nmonth,nday
[3732]	116	CALL xios_set_context_attr(TRIM(clname), start_date=cldate )
[1359]	117
	118	! horizontal grid definition
[1738]	119	CALL set_scalar
[3771]	120	CALL set_grid( "T", glamt, gphit )
	121	CALL set_grid( "U", glamu, gphiu )
	122	CALL set_grid( "V", glamv, gphiv )
	123	CALL set_grid( "W", glamt, gphit )
[1359]	124
	125	! vertical grid definition
[3737]	126	CALL iom_set_axis_attr( "deptht", gdept_0 )
	127	CALL iom_set_axis_attr( "depthu", gdept_0 )
	128	CALL iom_set_axis_attr( "depthv", gdept_0 )
	129	CALL iom_set_axis_attr( "depthw", gdepw_0 )
[3294]	130	# if defined key_floats
[4276]	131	CALL iom_set_axis_attr( "nfloat", (/ (REAL(ji,wp), ji=1,nfloat) /) )
[3294]	132	# endif
[4276]	133	CALL iom_set_axis_attr( "icbcla", class_num )
[1725]	134
	135	! automatic definitions of some of the xml attributs
	136	CALL set_xmlatt
[1359]	137
	138	! end file definition
[4276]	139	dtime%second = rdt
	140	CALL xios_set_timestep(dtime)
	141	CALL xios_close_context_definition()
	142
	143	CALL xios_update_calendar(0)
[1359]	144	#endif
[4276]	145
[1359]	146	END SUBROUTINE iom_init
	147
	148
[1793]	149	SUBROUTINE iom_swap
	150	!!---------------------------------------------------------------------
	151	!! * SUBROUTINE iom_swap *
	152	!!
	153	!! ** Purpose : swap context between different agrif grid for xmlio_server
	154	!!---------------------------------------------------------------------
	155	#if defined key_iomput
[3695]	156	TYPE(xios_context) :: nemo_hdl
[1793]	157
	158	IF( TRIM(Agrif_CFixed()) == '0' ) THEN
[3695]	159	CALL xios_get_handle("nemo",nemo_hdl)
[1793]	160	ELSE
[3695]	161	CALL xios_get_handle(TRIM(Agrif_CFixed())//"_nemo",nemo_hdl)
[1793]	162	ENDIF
[3695]	163	CALL xios_set_current_context(nemo_hdl)
[1793]	164
	165	#endif
	166	END SUBROUTINE iom_swap
	167
	168
[1319]	169	SUBROUTINE iom_open( cdname, kiomid, ldwrt, kdom, kiolib, ldstop, ldiof )
[544]	170	!!---------------------------------------------------------------------
	171	!! * SUBROUTINE iom_open *
	172	!!
	173	!! ** Purpose : open an input file (return 0 if not found)
	174	!!---------------------------------------------------------------------
	175	CHARACTER(len=*), INTENT(in ) :: cdname ! File name
	176	INTEGER , INTENT( out) :: kiomid ! iom identifier of the opened file
	177	LOGICAL , INTENT(in ), OPTIONAL :: ldwrt ! open in write modeb (default = .FALSE.)
	178	INTEGER , INTENT(in ), OPTIONAL :: kdom ! Type of domain to be written (default = jpdom_local_noovlap)
[547]	179	INTEGER , INTENT(in ), OPTIONAL :: kiolib ! library used to open the file (default = jpnf90)
[679]	180	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if open to read a non-existing file (default = .TRUE.)
[1319]	181	LOGICAL , INTENT(in ), OPTIONAL :: ldiof ! Interp On the Fly, needed for AGRIF (default = .FALSE.)
[544]	182
[4276]	183	CHARACTER(LEN=256) :: clname ! the name of the file based on cdname [[+clcpu]+clcpu]
	184	CHARACTER(LEN=256) :: cltmpn ! tempory name to store clname (in writting mode)
[544]	185	CHARACTER(LEN=10) :: clsuffix ! ".nc" or ".dimg"
[550]	186	CHARACTER(LEN=15) :: clcpu ! the cpu number (max jpmax_digits digits)
[4276]	187	CHARACTER(LEN=256) :: clinfo ! info character
[544]	188	LOGICAL :: llok ! check the existence
[679]	189	LOGICAL :: llwrt ! local definition of ldwrt
[1200]	190	LOGICAL :: llnoov ! local definition to read overlap
[679]	191	LOGICAL :: llstop ! local definition of ldstop
[1319]	192	LOGICAL :: lliof ! local definition of ldiof
[544]	193	INTEGER :: iolib ! library do we use to open the file
	194	INTEGER :: icnt ! counter for digits in clcpu (max = jpmax_digits)
	195	INTEGER :: iln, ils ! lengths of character
	196	INTEGER :: idom ! type of domain
	197	INTEGER :: istop !
	198	INTEGER, DIMENSION(2,5) :: idompar ! domain parameters:
	199	! local number of points for x,y dimensions
	200	! position of first local point for x,y dimensions
	201	! position of last local point for x,y dimensions
	202	! start halo size for x,y dimensions
	203	! end halo size for x,y dimensions
	204	!---------------------------------------------------------------------
	205	! Initializations and control
	206	! =============
[1341]	207	kiomid = -1
[544]	208	clinfo = ' iom_open ~~~ '
	209	istop = nstop
	210	! if iom_open is called for the first time: initialize iom_file(:)%nfid to 0
	211	! (could be done when defining iom_file in f95 but not in f90)
[1441]	212	IF( Agrif_Root() ) THEN
	213	IF( iom_open_init == 0 ) THEN
	214	iom_file(:)%nfid = 0
	215	iom_open_init = 1
	216	ENDIF
[1409]	217	ENDIF
[544]	218	! do we read or write the file?
	219	IF( PRESENT(ldwrt) ) THEN ; llwrt = ldwrt
	220	ELSE ; llwrt = .FALSE.
	221	ENDIF
[679]	222	! do we call ctl_stop if we try to open a non-existing file in read mode?
	223	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	224	ELSE ; llstop = .TRUE.
	225	ENDIF
[544]	226	! what library do we use to open the file?
	227	IF( PRESENT(kiolib) ) THEN ; iolib = kiolib
[547]	228	ELSE ; iolib = jpnf90
[544]	229	ENDIF
[1319]	230	! are we using interpolation on the fly?
	231	IF( PRESENT(ldiof) ) THEN ; lliof = ldiof
	232	ELSE ; lliof = .FALSE.
	233	ENDIF
[1200]	234	! do we read the overlap
	235	! ugly patch SM+JMM+RB to overwrite global definition in some cases
[1202]	236	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
[544]	237	! create the file name by added, if needed, TRIM(Agrif_CFixed()) and TRIM(clsuffix)
	238	! =============
	239	clname = trim(cdname)
[1319]	240	IF ( .NOT. Agrif_Root() .AND. .NOT. lliof ) THEN
[1200]	241	iln = INDEX(clname,'/')
	242	cltmpn = clname(1:iln)
	243	clname = clname(iln+1:LEN_TRIM(clname))
	244	clname=TRIM(cltmpn)//TRIM(Agrif_CFixed())//'_'//TRIM(clname)
	245	ENDIF
[544]	246	! which suffix should we use?
	247	SELECT CASE (iolib)
	248	CASE (jpioipsl ) ; clsuffix = '.nc'
	249	CASE (jpnf90 ) ; clsuffix = '.nc'
	250	CASE (jprstdimg) ; clsuffix = '.dimg'
	251	CASE DEFAULT ; clsuffix = ''
	252	CALL ctl_stop( TRIM(clinfo), 'accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	253	END SELECT
	254	! Add the suffix if needed
	255	iln = LEN_TRIM(clname)
	256	ils = LEN_TRIM(clsuffix)
[742]	257	IF( iln <= ils .OR. INDEX( TRIM(clname), TRIM(clsuffix), back = .TRUE. ) /= iln - ils + 1 ) &
	258	& clname = TRIM(clname)//TRIM(clsuffix)
[544]	259	cltmpn = clname ! store this name
	260	! try to find if the file to be opened already exist
	261	! =============
	262	INQUIRE( FILE = clname, EXIST = llok )
	263	IF( .NOT.llok ) THEN
	264	! we try to add the cpu number to the name
[679]	265	IF( iolib == jprstdimg ) THEN ; WRITE(clcpu,*) narea
	266	ELSE ; WRITE(clcpu,*) narea-1
	267	ENDIF
[544]	268	clcpu = TRIM(ADJUSTL(clcpu))
[679]	269	iln = INDEX(clname,TRIM(clsuffix), back = .TRUE.)
[544]	270	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	271	icnt = 0
	272	INQUIRE( FILE = clname, EXIST = llok )
	273	! we try different formats for the cpu number by adding 0
	274	DO WHILE( .NOT.llok .AND. icnt < jpmax_digits )
	275	clcpu = "0"//trim(clcpu)
	276	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	277	INQUIRE( FILE = clname, EXIST = llok )
	278	icnt = icnt + 1
	279	END DO
	280	ENDIF
[679]	281	IF( llwrt ) THEN
	282	! check the domain definition
	283	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	284	! idom = jpdom_local_noovlap ! default definition
[1200]	285	IF( llnoov ) THEN ; idom = jpdom_local_noovlap ! default definition
	286	ELSE ; idom = jpdom_local_full ! default definition
[679]	287	ENDIF
	288	IF( PRESENT(kdom) ) idom = kdom
	289	! create the domain informations
	290	! =============
	291	SELECT CASE (idom)
	292	CASE (jpdom_local_full)
	293	idompar(:,1) = (/ jpi , jpj /)
	294	idompar(:,2) = (/ nimpp , njmpp /)
	295	idompar(:,3) = (/ nimpp + jpi - 1 , njmpp + jpj - 1 /)
	296	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	297	idompar(:,5) = (/ jpi - nlei , jpj - nlej /)
	298	CASE (jpdom_local_noextra)
	299	idompar(:,1) = (/ nlci , nlcj /)
	300	idompar(:,2) = (/ nimpp , njmpp /)
	301	idompar(:,3) = (/ nimpp + nlci - 1, njmpp + nlcj - 1 /)
	302	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	303	idompar(:,5) = (/ nlci - nlei , nlcj - nlej /)
	304	CASE (jpdom_local_noovlap)
	305	idompar(:,1) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	306	idompar(:,2) = (/ nimpp + nldi - 1, njmpp + nldj - 1 /)
	307	idompar(:,3) = (/ nimpp + nlei - 1, njmpp + nlej - 1 /)
	308	idompar(:,4) = (/ 0 , 0 /)
	309	idompar(:,5) = (/ 0 , 0 /)
	310	CASE DEFAULT
	311	CALL ctl_stop( TRIM(clinfo), 'wrong value of kdom, only jpdom_local* cases are accepted' )
	312	END SELECT
	313	ENDIF
[544]	314	! Open the NetCDF or RSTDIMG file
	315	! =============
	316	! do we have some free file identifier?
	317	IF( MINVAL(iom_file(:)%nfid) /= 0 ) &
[679]	318	& CALL ctl_stop( TRIM(clinfo), 'No more free file identifier', 'increase jpmax_files in iom_def' )
	319	! if no file was found...
	320	IF( .NOT. llok ) THEN
	321	IF( .NOT. llwrt ) THEN ! we are in read mode
	322	IF( llstop ) THEN ; CALL ctl_stop( TRIM(clinfo), 'File '//TRIM(cltmpn)//'* not found' )
	323	ELSE ; istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
	324	ENDIF
	325	ELSE ! we are in write mode so we
	326	clname = cltmpn ! get back the file name without the cpu number
	327	ENDIF
[2586]	328	ELSE
	329	IF( llwrt .AND. .NOT. ln_clobber ) THEN ! we stop as we want to write in a new file
	330	CALL ctl_stop( TRIM(clinfo), 'We want to write in a new file but '//TRIM(clname)//' already exists...' )
	331	istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
	332	ENDIF
[679]	333	ENDIF
[544]	334	IF( istop == nstop ) THEN ! no error within this routine
	335	SELECT CASE (iolib)
	336	CASE (jpioipsl ) ; CALL iom_ioipsl_open( clname, kiomid, llwrt, llok, idompar )
	337	CASE (jpnf90 ) ; CALL iom_nf90_open( clname, kiomid, llwrt, llok, idompar )
	338	CASE (jprstdimg) ; CALL iom_rstdimg_open( clname, kiomid, llwrt, llok, idompar )
	339	CASE DEFAULT
	340	CALL ctl_stop( TRIM(clinfo)//' accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	341	END SELECT
	342	ENDIF
	343	!
	344	END SUBROUTINE iom_open
	345
	346
	347	SUBROUTINE iom_close( kiomid )
	348	!!--------------------------------------------------------------------
	349	!! * SUBROUTINE iom_close *
	350	!!
	351	!! ** Purpose : close an input file, or all files opened by iom
	352	!!--------------------------------------------------------------------
[1131]	353	INTEGER, INTENT(inout), OPTIONAL :: kiomid ! iom identifier of the file to be closed
	354	! ! return 0 when file is properly closed
	355	! ! No argument: all files opened by iom are closed
[544]	356
	357	INTEGER :: jf ! dummy loop indices
	358	INTEGER :: i_s, i_e ! temporary integer
	359	CHARACTER(LEN=100) :: clinfo ! info character
	360	!---------------------------------------------------------------------
	361	!
	362	clinfo = ' iom_close ~~~ '
	363	IF( PRESENT(kiomid) ) THEN
	364	i_s = kiomid
	365	i_e = kiomid
	366	ELSE
	367	i_s = 1
	368	i_e = jpmax_files
	369	ENDIF
	370
	371	IF( i_s > 0 ) THEN
	372	DO jf = i_s, i_e
	373	IF( iom_file(jf)%nfid > 0 ) THEN
	374	SELECT CASE (iom_file(jf)%iolib)
	375	CASE (jpioipsl ) ; CALL iom_ioipsl_close( jf )
	376	CASE (jpnf90 ) ; CALL iom_nf90_close( jf )
	377	CASE (jprstdimg) ; CALL iom_rstdimg_close( jf )
	378	CASE DEFAULT
	379	CALL ctl_stop( TRIM(clinfo)//' accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	380	END SELECT
[1131]	381	iom_file(jf)%nfid = 0 ! free the id
	382	IF( PRESENT(kiomid) ) kiomid = 0 ! return 0 as id to specify that the file was closed
[679]	383	IF(lwp) WRITE(numout,*) TRIM(clinfo)//' close file: '//TRIM(iom_file(jf)%name)//' ok'
[544]	384	ELSEIF( PRESENT(kiomid) ) THEN
	385	WRITE(ctmp1,*) '--->', kiomid
	386	CALL ctl_stop( TRIM(clinfo)//' Invalid file identifier', ctmp1 )
	387	ENDIF
	388	END DO
	389	ENDIF
	390	!
	391	END SUBROUTINE iom_close
	392
	393
[745]	394	FUNCTION iom_varid ( kiomid, cdvar, kdimsz, ldstop )
[544]	395	!!-----------------------------------------------------------------------
	396	!! * FUNCTION iom_varid *
	397	!!
	398	!! ** Purpose : get the id of a variable in a file (return 0 if not found)
	399	!!-----------------------------------------------------------------------
	400	INTEGER , INTENT(in ) :: kiomid ! file Identifier
	401	CHARACTER(len=*) , INTENT(in ) :: cdvar ! name of the variable
	402	INTEGER, DIMENSION(:), INTENT( out), OPTIONAL :: kdimsz ! size of the dimensions
[745]	403	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if looking for non-existing variable (default = .TRUE.)
[544]	404	!
	405	INTEGER :: iom_varid, iiv, i_nvd
	406	LOGICAL :: ll_fnd
	407	CHARACTER(LEN=100) :: clinfo ! info character
[745]	408	LOGICAL :: llstop ! local definition of ldstop
[544]	409	!!-----------------------------------------------------------------------
	410	iom_varid = 0 ! default definition
[745]	411	! do we call ctl_stop if we look for non-existing variable?
	412	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	413	ELSE ; llstop = .TRUE.
	414	ENDIF
[544]	415	!
	416	IF( kiomid > 0 ) THEN
[679]	417	clinfo = 'iom_varid, file: '//trim(iom_file(kiomid)%name)//', var: '//trim(cdvar)
[544]	418	IF( iom_file(kiomid)%nfid == 0 ) THEN
	419	CALL ctl_stop( trim(clinfo), 'the file is not open' )
	420	ELSE
	421	ll_fnd = .FALSE.
	422	iiv = 0
	423	!
	424	DO WHILE ( .NOT.ll_fnd .AND. iiv < iom_file(kiomid)%nvars )
	425	iiv = iiv + 1
	426	ll_fnd = ( TRIM(cdvar) == TRIM(iom_file(kiomid)%cn_var(iiv)) )
	427	END DO
	428	!
	429	IF( .NOT.ll_fnd ) THEN
	430	iiv = iiv + 1
	431	IF( iiv <= jpmax_vars ) THEN
	432	SELECT CASE (iom_file(kiomid)%iolib)
	433	CASE (jpioipsl ) ; iom_varid = iom_ioipsl_varid( kiomid, cdvar, iiv, kdimsz )
[745]	434	CASE (jpnf90 ) ; iom_varid = iom_nf90_varid ( kiomid, cdvar, iiv, kdimsz )
	435	CASE (jprstdimg) ; iom_varid = -1 ! all variables are listed in iom_file
[544]	436	CASE DEFAULT
	437	CALL ctl_stop( TRIM(clinfo)//' accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	438	END SELECT
	439	ELSE
	440	CALL ctl_stop( trim(clinfo), 'Too many variables in the file '//iom_file(kiomid)%name, &
	441	& 'increase the parameter jpmax_vars')
	442	ENDIF
[745]	443	IF( llstop .AND. iom_varid == -1 ) CALL ctl_stop( TRIM(clinfo)//' not found' )
[544]	444	ELSE
	445	iom_varid = iiv
	446	IF( PRESENT(kdimsz) ) THEN
	447	i_nvd = iom_file(kiomid)%ndims(iiv)
	448	IF( i_nvd == size(kdimsz) ) THEN
	449	kdimsz(:) = iom_file(kiomid)%dimsz(1:i_nvd,iiv)
	450	ELSE
	451	WRITE(ctmp1,*) i_nvd, size(kdimsz)
	452	CALL ctl_stop( trim(clinfo), 'error in kdimsz size'//trim(ctmp1) )
	453	ENDIF
	454	ENDIF
	455	ENDIF
	456	ENDIF
	457	ENDIF
	458	!
	459	END FUNCTION iom_varid
	460
	461
	462	!!----------------------------------------------------------------------
	463	!! INTERFACE iom_get
	464	!!----------------------------------------------------------------------
[550]	465	SUBROUTINE iom_g0d( kiomid, cdvar, pvar )
[544]	466	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	467	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	468	REAL(wp) , INTENT( out) :: pvar ! read field
	469	!
	470	INTEGER :: idvar ! variable id
	471	!
[679]	472	IF( kiomid > 0 ) THEN
	473	idvar = iom_varid( kiomid, cdvar )
	474	IF( iom_file(kiomid)%nfid > 0 .AND. idvar > 0 ) THEN
	475	SELECT CASE (iom_file(kiomid)%iolib)
	476	CASE (jpioipsl ) ; CALL iom_ioipsl_get( kiomid, idvar, pvar )
	477	CASE (jpnf90 ) ; CALL iom_nf90_get( kiomid, idvar, pvar )
	478	CASE (jprstdimg) ; CALL iom_rstdimg_get( kiomid, idvar, pvar )
	479	CASE DEFAULT
	480	CALL ctl_stop( 'iom_g0d: accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	481	END SELECT
	482	ENDIF
	483	ENDIF
[550]	484	END SUBROUTINE iom_g0d
[544]	485
[550]	486	SUBROUTINE iom_g1d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount )
[544]	487	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	488	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	489	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	490	REAL(wp) , INTENT( out), DIMENSION(:) :: pvar ! read field
	491	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	492	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kstart ! start axis position of the reading
	493	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kcount ! number of points in each axis
	494	!
[679]	495	IF( kiomid > 0 ) THEN
	496	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r1d=pvar, &
	497	& ktime=ktime, kstart=kstart, kcount=kcount )
	498	ENDIF
[550]	499	END SUBROUTINE iom_g1d
[544]	500
[550]	501	SUBROUTINE iom_g2d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount )
[544]	502	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	503	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	504	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	505	REAL(wp) , INTENT( out), DIMENSION(:,:) :: pvar ! read field
	506	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	507	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kstart ! start axis position of the reading
	508	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kcount ! number of points in each axis
	509	!
[679]	510	IF( kiomid > 0 ) THEN
	511	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r2d=pvar, &
	512	& ktime=ktime, kstart=kstart, kcount=kcount )
	513	ENDIF
[550]	514	END SUBROUTINE iom_g2d
[544]	515
[550]	516	SUBROUTINE iom_g3d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount )
[544]	517	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	518	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	519	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	520	REAL(wp) , INTENT( out), DIMENSION(:,:,:) :: pvar ! read field
	521	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	522	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kstart ! start axis position of the reading
	523	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kcount ! number of points in each axis
	524	!
[679]	525	IF( kiomid > 0 ) THEN
	526	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r3d=pvar, &
	527	& ktime=ktime, kstart=kstart, kcount=kcount )
	528	ENDIF
[550]	529	END SUBROUTINE iom_g3d
[544]	530	!!----------------------------------------------------------------------
	531
	532	SUBROUTINE iom_get_123d( kiomid, kdom , cdvar , &
[679]	533	& pv_r1d, pv_r2d, pv_r3d, &
	534	& ktime , kstart, kcount )
[544]	535	!!-----------------------------------------------------------------------
	536	!! * ROUTINE iom_get_123d *
	537	!!
	538	!! ** Purpose : read a 1D/2D/3D variable
	539	!!
	540	!! ** Method : read ONE record at each CALL
	541	!!-----------------------------------------------------------------------
	542	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	543	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	544	CHARACTER(len=*) , INTENT(in ) :: cdvar ! Name of the variable
	545	REAL(wp), DIMENSION(:) , INTENT( out), OPTIONAL :: pv_r1d ! read field (1D case)
	546	REAL(wp), DIMENSION(:,:) , INTENT( out), OPTIONAL :: pv_r2d ! read field (2D case)
	547	REAL(wp), DIMENSION(:,:,:) , INTENT( out), OPTIONAL :: pv_r3d ! read field (3D case)
	548	INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
	549	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kstart ! start position of the reading in each axis
	550	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kcount ! number of points to be read in each axis
	551	!
[1200]	552	LOGICAL :: llnoov ! local definition to read overlap
[544]	553	INTEGER :: jl ! loop on number of dimension
	554	INTEGER :: idom ! type of domain
	555	INTEGER :: idvar ! id of the variable
	556	INTEGER :: inbdim ! number of dimensions of the variable
	557	INTEGER :: idmspc ! number of spatial dimensions
	558	INTEGER :: itime ! record number
	559	INTEGER :: istop ! temporary value of nstop
[679]	560	INTEGER :: ix1, ix2, iy1, iy2 ! subdomain indexes
	561	INTEGER :: ji, jj ! loop counters
	562	INTEGER :: irankpv !
	563	INTEGER :: ind1, ind2 ! substring index
[544]	564	INTEGER, DIMENSION(jpmax_dims) :: istart ! starting point to read for each axis
	565	INTEGER, DIMENSION(jpmax_dims) :: icnt ! number of value to read along each axis
	566	INTEGER, DIMENSION(jpmax_dims) :: idimsz ! size of the dimensions of the variable
[679]	567	INTEGER, DIMENSION(jpmax_dims) :: ishape ! size of the dimensions of the variable
[544]	568	REAL(wp) :: zscf, zofs ! sacle_factor and add_offset
	569	INTEGER :: itmp ! temporary integer
[4276]	570	CHARACTER(LEN=256) :: clinfo ! info character
	571	CHARACTER(LEN=256) :: clname ! file name
[679]	572	CHARACTER(LEN=1) :: clrankpv, cldmspc !
[544]	573	!---------------------------------------------------------------------
	574	!
[679]	575	clname = iom_file(kiomid)%name ! esier to read
	576	clinfo = ' iom_get_123d, file: '//trim(clname)//', var: '//trim(cdvar)
[544]	577	! local definition of the domain ?
	578	idom = kdom
[1200]	579	! do we read the overlap
	580	! ugly patch SM+JMM+RB to overwrite global definition in some cases
[1202]	581	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
[544]	582	! check kcount and kstart optionals parameters...
[679]	583	IF( PRESENT(kcount) .AND. (.NOT. PRESENT(kstart)) ) CALL ctl_stop(trim(clinfo), 'kcount present needs kstart present')
	584	IF( PRESENT(kstart) .AND. (.NOT. PRESENT(kcount)) ) CALL ctl_stop(trim(clinfo), 'kstart present needs kcount present')
	585	IF( PRESENT(kstart) .AND. idom /= jpdom_unknown ) CALL ctl_stop(trim(clinfo), 'kstart present needs kdom = jpdom_unknown')
[544]	586
	587	! Search for the variable in the data base (eventually actualize data)
	588	istop = nstop
	589	idvar = iom_varid( kiomid, cdvar )
	590	!
	591	IF( idvar > 0 ) THEN
	592	! to write iom_file(kiomid)%dimsz in a shorter way !
	593	idimsz(:) = iom_file(kiomid)%dimsz(:, idvar)
	594	inbdim = iom_file(kiomid)%ndims(idvar) ! number of dimensions in the file
	595	idmspc = inbdim ! number of spatial dimensions in the file
	596	IF( iom_file(kiomid)%luld(idvar) ) idmspc = inbdim - 1
[679]	597	IF( idmspc > 3 ) CALL ctl_stop(trim(clinfo), 'the file has more than 3 spatial dimensions this case is not coded...')
	598	!
	599	! update idom definition...
	600	! Identify the domain in case of jpdom_auto(glo/dta) definition
	601	IF( idom == jpdom_autoglo .OR. idom == jpdom_autodta ) THEN
	602	IF( idom == jpdom_autoglo ) THEN ; idom = jpdom_global
	603	ELSE ; idom = jpdom_data
[544]	604	ENDIF
[679]	605	ind1 = INDEX( clname, '_', back = .TRUE. ) + 1
	606	ind2 = INDEX( clname, '.', back = .TRUE. ) - 1
	607	IF( ind2 > ind1 ) THEN ; IF( VERIFY( clname(ind1:ind2), '0123456789' ) == 0 ) idom = jpdom_local ; ENDIF
[544]	608	ENDIF
[679]	609	! Identify the domain in case of jpdom_local definition
	610	IF( idom == jpdom_local ) THEN
	611	IF( idimsz(1) == jpi .AND. idimsz(2) == jpj ) THEN ; idom = jpdom_local_full
	612	ELSEIF( idimsz(1) == nlci .AND. idimsz(2) == nlcj ) THEN ; idom = jpdom_local_noextra
	613	ELSEIF( idimsz(1) == (nlei - nldi + 1) .AND. idimsz(2) == (nlej - nldj + 1) ) THEN ; idom = jpdom_local_noovlap
	614	ELSE ; CALL ctl_stop( trim(clinfo), 'impossible to identify the local domain' )
	615	ENDIF
	616	ENDIF
[544]	617	!
[679]	618	! check the consistency between input array and data rank in the file
[544]	619	!
	620	! initializations
	621	itime = 1
	622	IF( PRESENT(ktime) ) itime = ktime
[679]	623
	624	irankpv = 1 * COUNT( (/PRESENT(pv_r1d)/) ) + 2 * COUNT( (/PRESENT(pv_r2d)/) ) + 3 * COUNT( (/PRESENT(pv_r3d)/) )
	625	WRITE(clrankpv, fmt='(i1)') irankpv
	626	WRITE(cldmspc , fmt='(i1)') idmspc
[544]	627	!
[679]	628	IF( idmspc < irankpv ) THEN
	629	CALL ctl_stop( TRIM(clinfo), 'The file has only '//cldmspc//' spatial dimension', &
	630	& 'it is impossible to read a '//clrankpv//'D array from this file...' )
	631	ELSEIF( idmspc == irankpv ) THEN
	632	IF( PRESENT(pv_r1d) .AND. idom /= jpdom_unknown ) &
	633	& CALL ctl_stop( TRIM(clinfo), 'case not coded...You must use jpdom_unknown' )
	634	ELSEIF( idmspc > irankpv ) THEN
	635	IF( PRESENT(pv_r2d) .AND. itime == 1 .AND. idimsz(3) == 1 .AND. idmspc == 3 ) THEN
	636	CALL ctl_warn( trim(clinfo), '2D array but 3 spatial dimensions for the data...' , &
	637	& 'As the size of the z dimension is 1 and as we try to read the first record, ', &
	638	& 'we accept this case, even if there is a possible mix-up between z and time dimension' )
	639	idmspc = idmspc - 1
[544]	640	ELSE
[679]	641	CALL ctl_stop( TRIM(clinfo), 'To keep iom lisibility, when reading a '//clrankpv//'D array,' , &
	642	& 'we do not accept data with more than '//cldmspc//' spatial dimension', &
	643	& 'Use ncwa -a to suppress the unnecessary dimensions' )
[544]	644	ENDIF
[679]	645	ENDIF
	646
	647	!
	648	! definition of istart and icnt
	649	!
	650	icnt (:) = 1
	651	istart(:) = 1
	652	istart(idmspc+1) = itime
	653
	654	IF( PRESENT(kstart) ) THEN ; istart(1:idmspc) = kstart(1:idmspc) ; icnt(1:idmspc) = kcount(1:idmspc)
	655	ELSE
	656	IF( idom == jpdom_unknown ) THEN ; icnt(1:idmspc) = idimsz(1:idmspc)
	657	ELSE
	658	IF( .NOT. PRESENT(pv_r1d) ) THEN ! not a 1D array
	659	IF( idom == jpdom_data ) THEN ; istart(1:2) = (/ mig(1), mjg(1) /) ! icnt(1:2) done bellow
	660	ELSEIF( idom == jpdom_global ) THEN ; istart(1:2) = (/ nimpp , njmpp /) ! icnt(1:2) done bellow
[544]	661	ENDIF
[679]	662	! we do not read the overlap -> we start to read at nldi, nldj
	663	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	664	! IF( idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[1200]	665	IF( llnoov .AND. idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[679]	666	! we do not read the overlap and the extra-halos -> from nldi to nlei and from nldj to nlej
	667	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	668	! icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
[1200]	669	IF( llnoov ) THEN ; icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	670	ELSE ; icnt(1:2) = (/ nlci , nlcj /)
[544]	671	ENDIF
[679]	672	IF( PRESENT(pv_r3d) ) THEN
	673	IF( idom == jpdom_data ) THEN ; icnt(3) = jpkdta
	674	ELSE ; icnt(3) = jpk
[544]	675	ENDIF
	676	ENDIF
	677	ENDIF
[679]	678	ENDIF
[544]	679	ENDIF
	680
	681	! check that istart and icnt can be used with this file
	682	!-
	683	DO jl = 1, jpmax_dims
	684	itmp = istart(jl)+icnt(jl)-1
[679]	685	IF( itmp > idimsz(jl) .AND. idimsz(jl) /= 0 ) THEN
	686	WRITE( ctmp1, FMT="('(istart(', i1, ') + icnt(', i1, ') - 1) = ', i5)" ) jl, jl, itmp
	687	WRITE( ctmp2, FMT="(' is larger than idimsz(', i1,') = ', i5)" ) jl, idimsz(jl)
[544]	688	CALL ctl_stop( trim(clinfo), 'start and count too big regarding to the size of the data, ', ctmp1, ctmp2 )
	689	ENDIF
	690	END DO
	691
	692	! check that icnt matches the input array
	693	!-
[679]	694	IF( idom == jpdom_unknown ) THEN
	695	IF( irankpv == 1 ) ishape(1:1) = SHAPE(pv_r1d)
	696	IF( irankpv == 2 ) ishape(1:2) = SHAPE(pv_r2d)
	697	IF( irankpv == 3 ) ishape(1:3) = SHAPE(pv_r3d)
	698	ctmp1 = 'd'
	699	ELSE
	700	IF( irankpv == 2 ) THEN
	701	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	702	! ishape(1:2) = SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1 = 'd(nldi:nlei,nldj:nlej)'
[1200]	703	IF( llnoov ) THEN ; ishape(1:2)=SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1='d(nldi:nlei,nldj:nlej)'
	704	ELSE ; ishape(1:2)=SHAPE(pv_r2d(1 :nlci,1 :nlcj )) ; ctmp1='d(1:nlci,1:nlcj)'
[544]	705	ENDIF
[679]	706	ENDIF
	707	IF( irankpv == 3 ) THEN
	708	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	709	! ishape(1:3) = SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1 = 'd(nldi:nlei,nldj:nlej,:)'
[1200]	710	IF( llnoov ) THEN ; ishape(1:3)=SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1='d(nldi:nlei,nldj:nlej,:)'
	711	ELSE ; ishape(1:3)=SHAPE(pv_r3d(1 :nlci,1 :nlcj,:)) ; ctmp1='d(1:nlci,1:nlcj,:)'
[544]	712	ENDIF
[679]	713	ENDIF
[544]	714	ENDIF
[679]	715
	716	DO jl = 1, irankpv
	717	WRITE( ctmp2, FMT="(', ', i1,'): ', i5,' /= icnt(', i1,'):', i5)" ) jl, ishape(jl), jl, icnt(jl)
	718	IF( ishape(jl) /= icnt(jl) ) CALL ctl_stop( TRIM(clinfo), 'size(pv_r'//clrankpv//TRIM(ctmp1)//TRIM(ctmp2) )
	719	END DO
	720
[544]	721	ENDIF
	722
	723	! read the data
	724	!-
[679]	725	IF( idvar > 0 .AND. istop == nstop ) THEN ! no additional errors until this point...
[544]	726	!
[679]	727	! find the right index of the array to be read
	728	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	729	! IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	730	! ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	731	! ENDIF
[1200]	732	IF( llnoov ) THEN
[679]	733	IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	734	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	735	ENDIF
	736	ELSE
	737	IF( idom /= jpdom_unknown ) THEN ; ix1 = 1 ; ix2 = nlci ; iy1 = 1 ; iy2 = nlcj
	738	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	739	ENDIF
	740	ENDIF
	741
[544]	742	SELECT CASE (iom_file(kiomid)%iolib)
[679]	743	CASE (jpioipsl ) ; CALL iom_ioipsl_get( kiomid, idvar, inbdim, istart, icnt, ix1, ix2, iy1, iy2, &
	744	& pv_r1d, pv_r2d, pv_r3d )
	745	CASE (jpnf90 ) ; CALL iom_nf90_get( kiomid, idvar, inbdim, istart, icnt, ix1, ix2, iy1, iy2, &
	746	& pv_r1d, pv_r2d, pv_r3d )
	747	CASE (jprstdimg) ; CALL iom_rstdimg_get( kiomid, idom, idvar, ix1, ix2, iy1, iy2, &
	748	& pv_r1d, pv_r2d, pv_r3d )
[544]	749	CASE DEFAULT
	750	CALL ctl_stop( TRIM(clinfo)//' accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	751	END SELECT
[679]	752
	753	IF( istop == nstop ) THEN ! no additional errors until this point...
[1191]	754	IF(lwp) WRITE(numout,"(10x,' read ',a,' (rec: ',i4,') in ',a,' ok')") TRIM(cdvar), itime, TRIM(iom_file(kiomid)%name)
	755
[679]	756	!--- overlap areas and extra hallows (mpp)
	757	IF( PRESENT(pv_r2d) .AND. idom /= jpdom_unknown ) THEN
	758	CALL lbc_lnk( pv_r2d,'Z',-999.,'no0' )
	759	ELSEIF( PRESENT(pv_r3d) .AND. idom /= jpdom_unknown ) THEN
	760	! this if could be simplified with the new lbc_lnk that works with any size of the 3rd dimension
	761	IF( icnt(3) == jpk ) THEN
	762	CALL lbc_lnk( pv_r3d,'Z',-999.,'no0' )
	763	ELSE ! put some arbitrary value (a call to lbc_lnk will be done later...)
	764	DO jj = nlcj+1, jpj ; pv_r3d(1:nlci, jj, :) = pv_r3d(1:nlci, nlej, :) ; END DO
	765	DO ji = nlci+1, jpi ; pv_r3d(ji , : , :) = pv_r3d(nlei , : , :) ; END DO
	766	ENDIF
	767	ENDIF
	768
[3764]	769	! C1D case : always call lbc_lnk to replicate the central value over the whole 3X3 domain
	770	IF( lk_c1d .AND. PRESENT(pv_r2d) ) CALL lbc_lnk( pv_r2d,'Z',1. )
	771	IF( lk_c1d .AND. PRESENT(pv_r3d) ) CALL lbc_lnk( pv_r3d,'Z',1. )
	772
[679]	773	!--- Apply scale_factor and offset
	774	zscf = iom_file(kiomid)%scf(idvar) ! scale factor
	775	zofs = iom_file(kiomid)%ofs(idvar) ! offset
	776	IF( PRESENT(pv_r1d) ) THEN
	777	IF( zscf /= 1. ) pv_r1d(:) = pv_r1d(:) * zscf
	778	IF( zofs /= 0. ) pv_r1d(:) = pv_r1d(:) + zofs
	779	ELSEIF( PRESENT(pv_r2d) ) THEN
[1697]	780	!CDIR COLLAPSE
[679]	781	IF( zscf /= 1.) pv_r2d(:,:) = pv_r2d(:,:) * zscf
[1697]	782	!CDIR COLLAPSE
[679]	783	IF( zofs /= 0.) pv_r2d(:,:) = pv_r2d(:,:) + zofs
	784	ELSEIF( PRESENT(pv_r3d) ) THEN
[1697]	785	!CDIR COLLAPSE
[679]	786	IF( zscf /= 1.) pv_r3d(:,:,:) = pv_r3d(:,:,:) * zscf
[1697]	787	!CDIR COLLAPSE
[679]	788	IF( zofs /= 0.) pv_r3d(:,:,:) = pv_r3d(:,:,:) + zofs
	789	ENDIF
	790	!
[544]	791	ENDIF
	792	!
	793	ENDIF
	794	!
	795	END SUBROUTINE iom_get_123d
	796
	797
[911]	798	SUBROUTINE iom_gettime( kiomid, ptime, cdvar, kntime, cdunits, cdcalendar )
[544]	799	!!--------------------------------------------------------------------
	800	!! * SUBROUTINE iom_gettime *
	801	!!
	802	!! ** Purpose : read the time axis cdvar in the file
	803	!!--------------------------------------------------------------------
[911]	804	INTEGER , INTENT(in ) :: kiomid ! file Identifier
	805	REAL(wp), DIMENSION(:) , INTENT( out) :: ptime ! the time axis
	806	CHARACTER(len=*), OPTIONAL , INTENT(in ) :: cdvar ! time axis name
	807	INTEGER , OPTIONAL , INTENT( out) :: kntime ! number of times in file
	808	CHARACTER(len=*), OPTIONAL , INTENT( out) :: cdunits ! units attribute of time coordinate
	809	CHARACTER(len=*), OPTIONAL , INTENT( out) :: cdcalendar ! calendar attribute of
[544]	810	!
[911]	811	INTEGER, DIMENSION(1) :: kdimsz
[544]	812	INTEGER :: idvar ! id of the variable
[911]	813	CHARACTER(LEN=32) :: tname ! local name of time coordinate
[544]	814	CHARACTER(LEN=100) :: clinfo ! info character
	815	!---------------------------------------------------------------------
	816	!
[911]	817	IF ( PRESENT(cdvar) ) THEN
	818	tname = cdvar
	819	ELSE
	820	tname = iom_file(kiomid)%uldname
	821	ENDIF
[679]	822	IF( kiomid > 0 ) THEN
[911]	823	clinfo = 'iom_gettime, file: '//trim(iom_file(kiomid)%name)//', var: '//trim(tname)
	824	IF ( PRESENT(kntime) ) THEN
	825	idvar = iom_varid( kiomid, tname, kdimsz = kdimsz )
	826	kntime = kdimsz(1)
	827	ELSE
	828	idvar = iom_varid( kiomid, tname )
	829	ENDIF
[679]	830	!
	831	ptime(:) = 0. ! default definition
	832	IF( idvar > 0 ) THEN
	833	IF( iom_file(kiomid)%ndims(idvar) == 1 ) THEN
	834	IF( iom_file(kiomid)%luld(idvar) ) THEN
[2499]	835	IF( iom_file(kiomid)%dimsz(1,idvar) <= size(ptime) ) THEN
[679]	836	SELECT CASE (iom_file(kiomid)%iolib)
[911]	837	CASE (jpioipsl ) ; CALL iom_ioipsl_gettime( kiomid, idvar, ptime, cdunits, cdcalendar )
	838	CASE (jpnf90 ) ; CALL iom_nf90_gettime( kiomid, idvar, ptime, cdunits, cdcalendar )
[679]	839	CASE (jprstdimg) ; CALL ctl_stop( TRIM(clinfo)//' case IO library == jprstdimg not coded...' )
	840	CASE DEFAULT
	841	CALL ctl_stop( TRIM(clinfo)//' accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	842	END SELECT
	843	ELSE
	844	WRITE(ctmp1,*) 'error with the size of ptime ',size(ptime),iom_file(kiomid)%dimsz(1,idvar)
	845	CALL ctl_stop( trim(clinfo), trim(ctmp1) )
	846	ENDIF
[544]	847	ELSE
[679]	848	CALL ctl_stop( trim(clinfo), 'variable dimension is not unlimited... use iom_get' )
[544]	849	ENDIF
	850	ELSE
[679]	851	CALL ctl_stop( trim(clinfo), 'the variable has more than 1 dimension' )
[544]	852	ENDIF
	853	ELSE
[679]	854	CALL ctl_stop( trim(clinfo), 'variable not found in '//iom_file(kiomid)%name )
[544]	855	ENDIF
	856	ENDIF
	857	!
	858	END SUBROUTINE iom_gettime
	859
	860
	861	!!----------------------------------------------------------------------
[2528]	862	!! INTERFACE iom_getatt
	863	!!----------------------------------------------------------------------
	864	SUBROUTINE iom_g0d_intatt( kiomid, cdatt, pvar )
	865	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	866	CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
	867	INTEGER , INTENT( out) :: pvar ! read field
	868	!
	869	IF( kiomid > 0 ) THEN
	870	IF( iom_file(kiomid)%nfid > 0 ) THEN
	871	SELECT CASE (iom_file(kiomid)%iolib)
	872	CASE (jpioipsl ) ; CALL ctl_stop('iom_getatt: only nf90 available')
	873	CASE (jpnf90 ) ; CALL iom_nf90_getatt( kiomid, cdatt, pvar )
	874	CASE (jprstdimg) ; CALL ctl_stop('iom_getatt: only nf90 available')
	875	CASE DEFAULT
	876	CALL ctl_stop( 'iom_g0d_att: accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	877	END SELECT
	878	ENDIF
	879	ENDIF
	880	END SUBROUTINE iom_g0d_intatt
	881
	882
	883	!!----------------------------------------------------------------------
[544]	884	!! INTERFACE iom_rstput
	885	!!----------------------------------------------------------------------
[550]	886	SUBROUTINE iom_rp0d( kt, kwrite, kiomid, cdvar, pvar, ktype )
[544]	887	INTEGER , INTENT(in) :: kt ! ocean time-step
	888	INTEGER , INTENT(in) :: kwrite ! writing time-step
	889	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	890	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[556]	891	REAL(wp) , INTENT(in) :: pvar ! written field
[544]	892	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
	893	INTEGER :: ivid ! variable id
[679]	894	IF( kiomid > 0 ) THEN
	895	IF( iom_file(kiomid)%nfid > 0 ) THEN
[745]	896	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[679]	897	SELECT CASE (iom_file(kiomid)%iolib)
	898	CASE (jpioipsl ) ; CALL iom_ioipsl_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r0d = pvar )
	899	CASE (jpnf90 ) ; CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r0d = pvar )
	900	CASE (jprstdimg) ; IF( kt == kwrite ) CALL iom_rstdimg_rstput( kiomid, cdvar, ivid, pvar )
	901	CASE DEFAULT
	902	CALL ctl_stop( 'iom_rp0d: accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	903	END SELECT
	904	ENDIF
	905	ENDIF
[550]	906	END SUBROUTINE iom_rp0d
[544]	907
[550]	908	SUBROUTINE iom_rp1d( kt, kwrite, kiomid, cdvar, pvar, ktype )
[544]	909	INTEGER , INTENT(in) :: kt ! ocean time-step
	910	INTEGER , INTENT(in) :: kwrite ! writing time-step
	911	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	912	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	913	REAL(wp) , INTENT(in), DIMENSION( :) :: pvar ! written field
[544]	914	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
	915	INTEGER :: ivid ! variable id
[679]	916	IF( kiomid > 0 ) THEN
	917	IF( iom_file(kiomid)%nfid > 0 ) THEN
[745]	918	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[679]	919	SELECT CASE (iom_file(kiomid)%iolib)
	920	CASE (jpioipsl ) ; CALL iom_ioipsl_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r1d = pvar )
	921	CASE (jpnf90 ) ; CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r1d = pvar )
	922	CASE (jprstdimg) ; IF( kt == kwrite ) CALL iom_rstdimg_rstput( kiomid, cdvar, ivid, pv_r1d = pvar )
	923	CASE DEFAULT
	924	CALL ctl_stop( 'iom_rp1d: accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	925	END SELECT
	926	ENDIF
	927	ENDIF
[550]	928	END SUBROUTINE iom_rp1d
[544]	929
[550]	930	SUBROUTINE iom_rp2d( kt, kwrite, kiomid, cdvar, pvar, ktype )
[544]	931	INTEGER , INTENT(in) :: kt ! ocean time-step
	932	INTEGER , INTENT(in) :: kwrite ! writing time-step
	933	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	934	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	935	REAL(wp) , INTENT(in), DIMENSION(:, : ) :: pvar ! written field
[544]	936	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
	937	INTEGER :: ivid ! variable id
[679]	938	IF( kiomid > 0 ) THEN
	939	IF( iom_file(kiomid)%nfid > 0 ) THEN
[745]	940	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[679]	941	SELECT CASE (iom_file(kiomid)%iolib)
	942	CASE (jpioipsl ) ; CALL iom_ioipsl_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r2d = pvar )
	943	CASE (jpnf90 ) ; CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r2d = pvar )
	944	CASE (jprstdimg) ; IF( kt == kwrite ) CALL iom_rstdimg_rstput( kiomid, cdvar, ivid, pv_r2d = pvar )
	945	CASE DEFAULT
	946	CALL ctl_stop( 'iom_rp2d: accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	947	END SELECT
	948	ENDIF
	949	ENDIF
[550]	950	END SUBROUTINE iom_rp2d
[544]	951
[550]	952	SUBROUTINE iom_rp3d( kt, kwrite, kiomid, cdvar, pvar, ktype )
[544]	953	INTEGER , INTENT(in) :: kt ! ocean time-step
	954	INTEGER , INTENT(in) :: kwrite ! writing time-step
	955	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	956	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	957	REAL(wp) , INTENT(in), DIMENSION(:,:,:) :: pvar ! written field
[544]	958	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
	959	INTEGER :: ivid ! variable id
[679]	960	IF( kiomid > 0 ) THEN
	961	IF( iom_file(kiomid)%nfid > 0 ) THEN
[745]	962	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[679]	963	SELECT CASE (iom_file(kiomid)%iolib)
	964	CASE (jpioipsl ) ; CALL iom_ioipsl_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r3d = pvar )
	965	CASE (jpnf90 ) ; CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r3d = pvar )
	966	CASE (jprstdimg) ; IF( kt == kwrite ) CALL iom_rstdimg_rstput( kiomid, cdvar, ivid, pv_r3d = pvar )
	967	CASE DEFAULT
	968	CALL ctl_stop( 'iom_rp3d: accepted IO library are only jpioipsl and jprstdimg' )
	969	END SELECT
	970	ENDIF
	971	ENDIF
[550]	972	END SUBROUTINE iom_rp3d
[1359]	973
	974
[544]	975	!!----------------------------------------------------------------------
[1457]	976	!! INTERFACE iom_put
[1359]	977	!!----------------------------------------------------------------------
[1738]	978	SUBROUTINE iom_p0d( cdname, pfield0d )
	979	CHARACTER(LEN=*), INTENT(in) :: cdname
	980	REAL(wp) , INTENT(in) :: pfield0d
	981	#if defined key_iomput
[3695]	982	CALL xios_send_field(cdname, (/pfield0d/))
[1738]	983	#else
	984	IF( .FALSE. ) WRITE(numout,*) cdname, pfield0d ! useless test to avoid compilation warnings
	985	#endif
	986	END SUBROUTINE iom_p0d
	987
[3294]	988	SUBROUTINE iom_p1d( cdname, pfield1d )
	989	CHARACTER(LEN=*) , INTENT(in) :: cdname
	990	REAL(wp), DIMENSION(:), INTENT(in) :: pfield1d
	991	#if defined key_iomput
[3695]	992	CALL xios_send_field( cdname, RESHAPE( (/pfield1d/), (/1,1,SIZE(pfield1d)/) ) )
[3294]	993	#else
	994	IF( .FALSE. ) WRITE(numout,*) cdname, pfield1d ! useless test to avoid compilation warnings
	995	#endif
	996	END SUBROUTINE iom_p1d
	997
[1359]	998	SUBROUTINE iom_p2d( cdname, pfield2d )
	999	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1000	REAL(wp), DIMENSION(:,:), INTENT(in) :: pfield2d
[1412]	1001	#if defined key_iomput
[3695]	1002	CALL xios_send_field(cdname, pfield2d)
[1520]	1003	#else
	1004	IF( .FALSE. ) WRITE(numout,*) cdname, pfield2d ! useless test to avoid compilation warnings
[1359]	1005	#endif
	1006	END SUBROUTINE iom_p2d
[544]	1007
[1359]	1008	SUBROUTINE iom_p3d( cdname, pfield3d )
	1009	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1010	REAL(wp), DIMENSION(:,:,:), INTENT(in) :: pfield3d
[1412]	1011	#if defined key_iomput
[3695]	1012	CALL xios_send_field(cdname, pfield3d)
[1520]	1013	#else
	1014	IF( .FALSE. ) WRITE(numout,*) cdname, pfield3d ! useless test to avoid compilation warnings
[1359]	1015	#endif
	1016	END SUBROUTINE iom_p3d
	1017	!!----------------------------------------------------------------------
[544]	1018
[1412]	1019	#if defined key_iomput
[1359]	1020
[4276]	1021	SUBROUTINE iom_set_domain_attr( cdid, ni_glo, nj_glo, ibegin, jbegin, ni, nj, zoom_ibegin, zoom_jbegin, zoom_ni, zoom_nj, &
[3771]	1022	& data_dim, data_ibegin, data_ni, data_jbegin, data_nj, lonvalue, latvalue, mask )
[4276]	1023	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3771]	1024	INTEGER , OPTIONAL, INTENT(in) :: ni_glo, nj_glo, ibegin, jbegin, ni, nj
	1025	INTEGER , OPTIONAL, INTENT(in) :: data_dim, data_ibegin, data_ni, data_jbegin, data_nj
	1026	INTEGER , OPTIONAL, INTENT(in) :: zoom_ibegin, zoom_jbegin, zoom_ni, zoom_nj
	1027	REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: lonvalue, latvalue
	1028	LOGICAL, DIMENSION(:,:), OPTIONAL, INTENT(in) :: mask
[3695]	1029
[4276]	1030	IF ( xios_is_valid_domain (cdid) ) THEN
	1031	CALL xios_set_domain_attr ( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1032	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
	1033	& zoom_ibegin=zoom_ibegin, zoom_jbegin=zoom_jbegin, zoom_ni=zoom_ni, zoom_nj=zoom_nj, &
[3771]	1034	& lonvalue=lonvalue, latvalue=latvalue,mask=mask )
[3695]	1035	ENDIF
	1036
[4276]	1037	IF ( xios_is_valid_domaingroup(cdid) ) THEN
	1038	CALL xios_set_domaingroup_attr( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1039	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
	1040	& zoom_ibegin=zoom_ibegin, zoom_jbegin=zoom_jbegin, zoom_ni=zoom_ni, zoom_nj=zoom_nj, &
[3771]	1041	& lonvalue=lonvalue, latvalue=latvalue,mask=mask )
[3695]	1042	ENDIF
[4276]	1043	CALL xios_solve_inheritance()
[3695]	1044
	1045	END SUBROUTINE iom_set_domain_attr
	1046
	1047
[4276]	1048	SUBROUTINE iom_set_axis_attr( cdid, paxis )
	1049	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3737]	1050	REAL(wp), DIMENSION(:), INTENT(in) :: paxis
[4276]	1051	IF ( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, size=size(paxis),value=paxis )
	1052	IF ( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, size=size(paxis),value=paxis )
	1053	CALL xios_solve_inheritance()
[3737]	1054	END SUBROUTINE iom_set_axis_attr
	1055
	1056
[4276]	1057	SUBROUTINE iom_set_field_attr( cdid, freq_op, freq_offset )
	1058	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3695]	1059	CHARACTER(LEN=*),OPTIONAL , INTENT(in) :: freq_op
[4276]	1060	CHARACTER(LEN=*),OPTIONAL , INTENT(in) :: freq_offset
	1061	IF ( xios_is_valid_field (cdid) ) CALL xios_set_field_attr ( cdid, freq_op=freq_op, freq_offset=freq_offset )
	1062	IF ( xios_is_valid_fieldgroup(cdid) ) CALL xios_set_fieldgroup_attr( cdid, freq_op=freq_op, freq_offset=freq_offset )
	1063	CALL xios_solve_inheritance()
[3695]	1064	END SUBROUTINE iom_set_field_attr
	1065
	1066
[4276]	1067	SUBROUTINE iom_set_file_attr( cdid, name, name_suffix )
	1068	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3695]	1069	CHARACTER(LEN=*),OPTIONAL , INTENT(in) :: name, name_suffix
[4276]	1070	IF ( xios_is_valid_file (cdid) ) CALL xios_set_file_attr ( cdid, name=name, name_suffix=name_suffix )
	1071	IF ( xios_is_valid_filegroup(cdid) ) CALL xios_set_filegroup_attr( cdid, name=name, name_suffix=name_suffix )
	1072	CALL xios_solve_inheritance()
[3771]	1073	END SUBROUTINE iom_set_file_attr
[3695]	1074
	1075
[4276]	1076	SUBROUTINE iom_get_file_attr( cdid, name, name_suffix, output_freq )
	1077	CHARACTER(LEN=*) , INTENT(in ) :: cdid
	1078	CHARACTER(LEN=*),OPTIONAL , INTENT(out) :: name, name_suffix, output_freq
	1079	LOGICAL :: llexist1,llexist2,llexist3
	1080	!---------------------------------------------------------------------
	1081	IF( PRESENT( name ) ) name = '' ! default values
	1082	IF( PRESENT( name_suffix ) ) name_suffix = ''
	1083	IF( PRESENT( output_freq ) ) output_freq = ''
	1084	IF ( xios_is_valid_file (cdid) ) THEN
	1085	CALL xios_solve_inheritance()
	1086	CALL xios_is_defined_file_attr ( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1087	IF(llexist1) CALL xios_get_file_attr ( cdid, name = name )
	1088	IF(llexist2) CALL xios_get_file_attr ( cdid, name_suffix = name_suffix )
	1089	IF(llexist3) CALL xios_get_file_attr ( cdid, output_freq = output_freq )
	1090	ENDIF
	1091	IF ( xios_is_valid_filegroup(cdid) ) THEN
	1092	CALL xios_solve_inheritance()
	1093	CALL xios_is_defined_filegroup_attr( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1094	IF(llexist1) CALL xios_get_filegroup_attr( cdid, name = name )
	1095	IF(llexist2) CALL xios_get_filegroup_attr( cdid, name_suffix = name_suffix )
	1096	IF(llexist3) CALL xios_get_filegroup_attr( cdid, output_freq = output_freq )
	1097	ENDIF
	1098	END SUBROUTINE iom_get_file_attr
	1099
	1100
	1101	SUBROUTINE iom_set_grid_attr( cdid, mask )
	1102	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3771]	1103	LOGICAL, DIMENSION(:,:,:), OPTIONAL, INTENT(in) :: mask
[4276]	1104	IF ( xios_is_valid_grid (cdid) ) CALL xios_set_grid_attr ( cdid, mask=mask )
	1105	IF ( xios_is_valid_gridgroup(cdid) ) CALL xios_set_gridgroup_attr( cdid, mask=mask )
	1106	CALL xios_solve_inheritance()
[3771]	1107	END SUBROUTINE iom_set_grid_attr
[3695]	1108
	1109
[3771]	1110	SUBROUTINE set_grid( cdgrd, plon, plat )
[1359]	1111	!!----------------------------------------------------------------------
[4276]	1112	!! * ROUTINE set_grid *
[1359]	1113	!!
[1725]	1114	!! ** Purpose : define horizontal grids
[1359]	1115	!!
	1116	!!----------------------------------------------------------------------
[3771]	1117	CHARACTER(LEN=1) , INTENT(in) :: cdgrd
[1359]	1118	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plon
	1119	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat
[3771]	1120	!
	1121	REAL(wp), DIMENSION(jpi,jpj,jpk) :: zmask
[3695]	1122	INTEGER :: ni,nj
	1123
	1124	ni=nlei-nldi+1 ; nj=nlej-nldj+1
[1359]	1125
[3771]	1126	CALL iom_set_domain_attr("grid_"//cdgrd, ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-1, jbegin=njmpp+nldj-1, ni=ni, nj=nj)
	1127	CALL iom_set_domain_attr("grid_"//cdgrd, data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj)
	1128	CALL iom_set_domain_attr("grid_"//cdgrd, lonvalue = RESHAPE(plon(nldi:nlei, nldj:nlej),(/ ni*nj /)), &
	1129	& latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /)))
	1130
	1131	IF ( ln_mskland ) THEN
	1132	! mask land points, keep values on coast line -> specific mask for U, V and W points
	1133	SELECT CASE ( cdgrd )
	1134	CASE('T') ; zmask(:,:,:) = tmask(:,:,:)
	1135	CASE('U') ; zmask(2:jpim1,:,:) = tmask(2:jpim1,:,:) + tmask(3:jpi,:,:) ; CALL lbc_lnk( zmask, 'U', 1. )
	1136	CASE('V') ; zmask(:,2:jpjm1,:) = tmask(:,2:jpjm1,:) + tmask(:,3:jpi,:) ; CALL lbc_lnk( zmask, 'V', 1. )
	1137	CASE('W') ; zmask(:,:,2:jpk ) = tmask(:,:,1:jpkm1) + tmask(:,:,2:jpk) ; zmask(:,:,1) = tmask(:,:,1)
	1138	END SELECT
	1139	!
[4276]	1140	CALL iom_set_domain_attr( "grid_"//cdgrd , mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,1),(/ni,nj /)) /= 0. )
	1141	CALL iom_set_grid_attr ( "grid_"//cdgrd//"_3D", mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,:),(/ni,nj,jpk/)) /= 0. )
[3771]	1142	ENDIF
[3695]	1143
[1359]	1144	END SUBROUTINE set_grid
	1145
[1725]	1146
[1738]	1147	SUBROUTINE set_scalar
	1148	!!----------------------------------------------------------------------
[4276]	1149	!! * ROUTINE set_scalar *
[1738]	1150	!!
	1151	!! ** Purpose : define fake grids for scalar point
	1152	!!
	1153	!!----------------------------------------------------------------------
	1154	REAL(wp), DIMENSION(1,1) :: zz = 1.
	1155	!!----------------------------------------------------------------------
[3695]	1156	CALL iom_set_domain_attr('scalarpoint', ni_glo=jpnij, nj_glo=1, ibegin=narea, jbegin=1, ni=1, nj=1)
	1157	CALL iom_set_domain_attr('scalarpoint', data_dim=1)
	1158	CALL iom_set_domain_attr('scalarpoint', lonvalue=(/ zz /), latvalue=(/ zz /))
[1738]	1159
	1160	END SUBROUTINE set_scalar
	1161
	1162
[1725]	1163	SUBROUTINE set_xmlatt
	1164	!!----------------------------------------------------------------------
[4276]	1165	!! * ROUTINE set_xmlatt *
[1725]	1166	!!
	1167	!! ** Purpose : automatic definitions of some of the xml attributs...
	1168	!!
	1169	!!----------------------------------------------------------------------
	1170	CHARACTER(len=1),DIMENSION( 3) :: clgrd ! suffix name
[4276]	1171	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	1172	CHARACTER(len=1) :: cl1 ! 1 character
	1173	CHARACTER(len=2) :: cl2 ! 1 character
[4276]	1174	INTEGER :: ji, jg ! loop counters
[1725]	1175	INTEGER :: ix, iy ! i-,j- index
	1176	REAL(wp) ,DIMENSION(11) :: zlontao ! longitudes of tao moorings
	1177	REAL(wp) ,DIMENSION( 7) :: zlattao ! latitudes of tao moorings
	1178	REAL(wp) ,DIMENSION( 4) :: zlonrama ! longitudes of rama moorings
	1179	REAL(wp) ,DIMENSION(11) :: zlatrama ! latitudes of rama moorings
	1180	REAL(wp) ,DIMENSION( 3) :: zlonpira ! longitudes of pirata moorings
	1181	REAL(wp) ,DIMENSION( 9) :: zlatpira ! latitudes of pirata moorings
	1182	!!----------------------------------------------------------------------
	1183	!
	1184	! frequency of the call of iom_put (attribut: freq_op)
[4276]	1185	WRITE(cl1,'(i1)') 1 ; CALL iom_set_field_attr('field_definition', freq_op = cl1//'ts', freq_offset='0ts')
	1186	WRITE(cl1,'(i1)') nn_fsbc ; CALL iom_set_field_attr('SBC' , freq_op = cl1//'ts', freq_offset='0ts')
	1187	WRITE(cl1,'(i1)') nn_dttrc ; CALL iom_set_field_attr('ptrc_T' , freq_op = cl1//'ts', freq_offset='0ts')
	1188	WRITE(cl1,'(i1)') nn_dttrc ; CALL iom_set_field_attr('diad_T' , freq_op = cl1//'ts', freq_offset='0ts')
[3695]	1189
[1725]	1190	! output file names (attribut: name)
[4276]	1191	DO ji = 1, 9
	1192	WRITE(cl1,'(i1)') ji
	1193	CALL iom_update_file_name('file'//cl1)
[1725]	1194	END DO
[4276]	1195	DO ji = 1, 99
	1196	WRITE(cl2,'(i2.2)') ji
	1197	CALL iom_update_file_name('file'//cl2)
	1198	END DO
[1725]	1199
	1200	! Zooms...
	1201	clgrd = (/ 'T', 'U', 'W' /)
	1202	DO jg = 1, SIZE(clgrd) ! grid type
	1203	cl1 = clgrd(jg)
	1204	! Equatorial section (attributs: jbegin, ni, name_suffix)
	1205	CALL dom_ngb( 0., 0., ix, iy, cl1 )
[4276]	1206	CALL iom_set_domain_attr ('Eq'//cl1, zoom_jbegin=iy, zoom_ni=jpiglo)
	1207	CALL iom_get_file_attr ('Eq'//cl1, name_suffix = clsuff )
	1208	CALL iom_set_file_attr ('Eq'//cl1, name_suffix = TRIM(clsuff)//'_Eq')
	1209	CALL iom_update_file_name('Eq'//cl1)
[1725]	1210	END DO
	1211	! TAO moorings (attributs: ibegin, jbegin, name_suffix)
	1212	zlontao = (/ 137.0, 147.0, 156.0, 165.0, -180.0, -170.0, -155.0, -140.0, -125.0, -110.0, -95.0 /)
	1213	zlattao = (/ -8.0, -5.0, -2.0, 0.0, 2.0, 5.0, 8.0 /)
	1214	CALL set_mooring( zlontao, zlattao )
	1215	! RAMA moorings (attributs: ibegin, jbegin, name_suffix)
	1216	zlonrama = (/ 55.0, 67.0, 80.5, 90.0 /)
	1217	zlatrama = (/ -16.0, -12.0, -8.0, -4.0, -1.5, 0.0, 1.5, 4.0, 8.0, 12.0, 15.0 /)
	1218	CALL set_mooring( zlonrama, zlatrama )
	1219	! PIRATA moorings (attributs: ibegin, jbegin, name_suffix)
	1220	zlonpira = (/ -38.0, -23.0, -10.0 /)
	1221	zlatpira = (/ -19.0, -14.0, -8.0, 0.0, 4.0, 8.0, 12.0, 15.0, 20.0 /)
	1222	CALL set_mooring( zlonpira, zlatpira )
	1223
	1224	END SUBROUTINE set_xmlatt
	1225
	1226
	1227	SUBROUTINE set_mooring( plon, plat)
	1228	!!----------------------------------------------------------------------
[4276]	1229	!! * ROUTINE set_mooring *
[1725]	1230	!!
	1231	!! ** Purpose : automatic definitions of moorings xml attributs...
	1232	!!
	1233	!!----------------------------------------------------------------------
	1234	REAL(wp), DIMENSION(:), INTENT(in) :: plon, plat ! longitudes/latitudes oft the mooring
	1235	!
	1236	!!$ CHARACTER(len=1),DIMENSION(4) :: clgrd = (/ 'T', 'U', 'V', 'W' /) ! suffix name
	1237	CHARACTER(len=1),DIMENSION(1) :: clgrd = (/ 'T' /) ! suffix name
[4276]	1238	CHARACTER(len=256) :: clname ! file name
	1239	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	1240	CHARACTER(len=1) :: cl1 ! 1 character
	1241	CHARACTER(len=6) :: clon,clat ! name of longitude, latitude
	1242	INTEGER :: ji, jj, jg ! loop counters
	1243	INTEGER :: ix, iy ! i-,j- index
	1244	REAL(wp) :: zlon, zlat
	1245	!!----------------------------------------------------------------------
	1246	DO jg = 1, SIZE(clgrd)
	1247	cl1 = clgrd(jg)
	1248	DO ji = 1, SIZE(plon)
	1249	DO jj = 1, SIZE(plat)
	1250	zlon = plon(ji)
	1251	zlat = plat(jj)
	1252	! modifications for RAMA moorings
	1253	IF( zlon == 67. .AND. zlat == 15. ) zlon = 65.
	1254	IF( zlon == 90. .AND. zlat <= -4. ) zlon = 95.
	1255	IF( zlon == 95. .AND. zlat == -4. ) zlat = -5.
	1256	! modifications for PIRATA moorings
	1257	IF( zlon == -38. .AND. zlat == -19. ) zlon = -34.
	1258	IF( zlon == -38. .AND. zlat == -14. ) zlon = -32.
	1259	IF( zlon == -38. .AND. zlat == -8. ) zlon = -30.
	1260	IF( zlon == -38. .AND. zlat == 0. ) zlon = -35.
	1261	IF( zlon == -23. .AND. zlat == 20. ) zlat = 21.
	1262	IF( zlon == -10. .AND. zlat == -14. ) zlat = -10.
	1263	IF( zlon == -10. .AND. zlat == -8. ) zlat = -6.
	1264	IF( zlon == -10. .AND. zlat == 4. ) THEN ; zlon = 0. ; zlat = 0. ; ENDIF
	1265	CALL dom_ngb( zlon, zlat, ix, iy, cl1 )
	1266	IF( zlon >= 0. ) THEN
	1267	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT( zlon), 'e'
	1268	ELSE ; WRITE(clon, '(f5.1,a)') zlon , 'e'
	1269	ENDIF
	1270	ELSE
	1271	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT(-zlon), 'w'
	1272	ELSE ; WRITE(clon, '(f5.1,a)') -zlon , 'w'
	1273	ENDIF
	1274	ENDIF
	1275	IF( zlat >= 0. ) THEN
	1276	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT( zlat), 'n'
	1277	ELSE ; WRITE(clat, '(f4.1,a)') zlat , 'n'
	1278	ENDIF
	1279	ELSE
	1280	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT(-zlat), 's'
	1281	ELSE ; WRITE(clat, '(f4.1,a)') -zlat , 's'
	1282	ENDIF
	1283	ENDIF
	1284	clname = TRIM(ADJUSTL(clat))//TRIM(ADJUSTL(clon))
[4276]	1285	CALL iom_set_domain_attr (TRIM(clname)//cl1, zoom_ibegin= ix, zoom_jbegin= iy)
	1286	CALL iom_get_file_attr (TRIM(clname)//cl1, name_suffix = clsuff )
	1287	CALL iom_set_file_attr (TRIM(clname)//cl1, name_suffix = TRIM(clsuff)//'_'//TRIM(clname))
	1288	CALL iom_update_file_name(TRIM(clname)//cl1)
[1725]	1289	END DO
	1290	END DO
	1291	END DO
	1292
	1293	END SUBROUTINE set_mooring
	1294
[4276]	1295
	1296	SUBROUTINE iom_update_file_name( cdid )
	1297	!!----------------------------------------------------------------------
	1298	!! * ROUTINE iom_update_file_name *
	1299	!!
	1300	!! ** Purpose :
	1301	!!
	1302	!!----------------------------------------------------------------------
	1303	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1304	!
	1305	CHARACTER(LEN=256) :: clname
	1306	CHARACTER(LEN=20) :: clfreq
	1307	CHARACTER(LEN=20) :: cldate
	1308	INTEGER :: idx
	1309	INTEGER :: jn
	1310	INTEGER :: itrlen
	1311	INTEGER :: iyear, imonth, iday, isec
	1312	REAL(wp) :: zsec
	1313	LOGICAL :: llexist
	1314	!!----------------------------------------------------------------------
	1315
	1316	DO jn = 1,2
	1317
	1318	IF( jn == 1 ) CALL iom_get_file_attr( cdid, name = clname, output_freq = clfreq )
	1319	IF( jn == 2 ) CALL iom_get_file_attr( cdid, name_suffix = clname )
	1320
	1321	IF ( TRIM(clname) /= '' ) THEN
	1322
	1323	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	1324	DO WHILE ( idx /= 0 )
	1325	clname = clname(1:idx-1)//TRIM(cexper)//clname(idx+9:LEN_TRIM(clname))
	1326	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	1327	END DO
	1328
	1329	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
	1330	DO WHILE ( idx /= 0 )
	1331	IF ( TRIM(clfreq) /= '' ) THEN
	1332	itrlen = LEN_TRIM(clfreq)
	1333	IF ( clfreq(itrlen-1:itrlen) == 'mo' ) clfreq = clfreq(1:itrlen-1)
	1334	clname = clname(1:idx-1)//TRIM(clfreq)//clname(idx+6:LEN_TRIM(clname))
	1335	ELSE
	1336	CALL ctl_stop('error in the name of file id '//TRIM(cdid), &
	1337	& ' attribute output_freq is undefined -> cannot replace @freq@ in '//TRIM(clname) )
	1338	ENDIF
	1339	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
	1340	END DO
	1341
	1342	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	1343	DO WHILE ( idx /= 0 )
	1344	cldate = iom_sdate( fjulday - rdttra(1) / rday )
	1345	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+11:LEN_TRIM(clname))
	1346	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	1347	END DO
	1348
	1349	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	1350	DO WHILE ( idx /= 0 )
	1351	cldate = iom_sdate( fjulday - rdttra(1) / rday, ldfull = .TRUE. )
	1352	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+15:LEN_TRIM(clname))
	1353	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	1354	END DO
	1355
	1356	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	1357	DO WHILE ( idx /= 0 )
	1358	cldate = iom_sdate( fjulday + rdttra(1) / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE. )
	1359	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+9:LEN_TRIM(clname))
	1360	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	1361	END DO
	1362
	1363	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	1364	DO WHILE ( idx /= 0 )
	1365	cldate = iom_sdate( fjulday + rdttra(1) / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE., ldfull = .TRUE. )
	1366	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+13:LEN_TRIM(clname))
	1367	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	1368	END DO
	1369
	1370	IF( jn == 1 ) CALL iom_set_file_attr( cdid, name = clname )
	1371	IF( jn == 2 ) CALL iom_set_file_attr( cdid, name_suffix = clname )
	1372
	1373	ENDIF
	1374
	1375	END DO
	1376
	1377	END SUBROUTINE iom_update_file_name
	1378
	1379
	1380	FUNCTION iom_sdate( pjday, ld24, ldfull )
	1381	!!----------------------------------------------------------------------
	1382	!! * ROUTINE iom_sdate *
	1383	!!
	1384	!! ** Purpose : send back the date corresponding to the given julian day
	1385	!!
	1386	!!----------------------------------------------------------------------
	1387	REAL(wp), INTENT(in ) :: pjday ! julian day
	1388	LOGICAL , INTENT(in ), OPTIONAL :: ld24 ! true to force 24:00 instead of 00:00
	1389	LOGICAL , INTENT(in ), OPTIONAL :: ldfull ! true to get the compleate date: yyyymmdd_hh:mm:ss
	1390	!
	1391	CHARACTER(LEN=20) :: iom_sdate
	1392	CHARACTER(LEN=50) :: clfmt ! format used to write the date
	1393	INTEGER :: iyear, imonth, iday, ihour, iminute, isec
	1394	REAL(wp) :: zsec
	1395	LOGICAL :: ll24, llfull
	1396	!
	1397	IF( PRESENT(ld24) ) THEN ; ll24 = ld24
	1398	ELSE ; ll24 = .FALSE.
	1399	ENDIF
	1400
	1401	IF( PRESENT(ldfull) ) THEN ; llfull = ldfull
	1402	ELSE ; llfull = .FALSE.
	1403	ENDIF
	1404
	1405	CALL ju2ymds( pjday, iyear, imonth, iday, zsec )
	1406	isec = NINT(zsec)
	1407
	1408	IF ( ll24 .AND. isec == 0 ) THEN ! 00:00 of the next day -> move to 24:00 of the current day
	1409	CALL ju2ymds( pjday - 1., iyear, imonth, iday, zsec )
	1410	isec = 86400
	1411	ENDIF
	1412
	1413	IF( iyear < 10000 ) THEN ; clfmt = "i4.4,2i2.2" ! format used to write the date
	1414	ELSE ; WRITE(clfmt, "('i',i1,',2i2.2')") INT(LOG10(REAL(iyear,wp))) + 1
	1415	ENDIF
	1416
	1417	IF( llfull ) THEN
	1418	clfmt = TRIM(clfmt)//",'_',i2.2,':',i2.2,':',i2.2"
	1419	ihour = isec / 3600
	1420	isec = MOD(isec, 3600)
	1421	iminute = isec / 60
	1422	isec = MOD(isec, 60)
	1423	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday, ihour, iminute, isec ! date of the end of run
	1424	ELSE
	1425	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday ! date of the end of run
	1426	ENDIF
	1427
	1428	END FUNCTION iom_sdate
	1429
[1359]	1430	#else
	1431
	1432	SUBROUTINE iom_setkt( kt )
	1433	INTEGER, INTENT(in ):: kt
[1520]	1434	IF( .FALSE. ) WRITE(numout,*) kt ! useless test to avoid compilation warnings
[1359]	1435	END SUBROUTINE iom_setkt
	1436
	1437	#endif
[3695]	1438
[544]	1439	!!======================================================================
	1440	END MODULE iom

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