[4213] | 1 | !---------------------------------------------------------------------- |
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| 2 | ! NEMO system team, System and Interface for oceanic RElocable Nesting |
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| 3 | !---------------------------------------------------------------------- |
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| 4 | ! |
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| 5 | ! |
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| 6 | ! PROGRAM: create_restart |
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| 7 | ! |
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| 8 | ! DESCRIPTION: |
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| 9 | !> @brief |
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| 10 | !> This program create restart file. |
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| 11 | !> |
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| 12 | !> @details |
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| 13 | !> Variables are read from restart file, or standard output. |
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| 14 | !> Then theses variables are interpolated on fine grid. |
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| 15 | !> Finally table are split over new decomposition. |
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| 16 | !> |
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| 17 | !> @author |
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| 18 | !> J.Paul |
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| 19 | ! REVISION HISTORY: |
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| 20 | !> @date Nov, 2013 - Initial Version |
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| 21 | ! |
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| 22 | !> @note Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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| 23 | !> |
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| 24 | !> @todo |
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| 25 | !> - add attributes indices and refinement in output file |
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| 26 | !> - check fileout exist at the beginning |
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| 27 | !---------------------------------------------------------------------- |
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| 28 | !> @code |
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| 29 | PROGRAM create_restart |
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| 30 | |
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| 31 | ! USE netcdf ! nf90 library |
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| 32 | USE global ! global variable |
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| 33 | USE kind ! F90 kind parameter |
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| 34 | USE logger ! log file manager |
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| 35 | USE fct ! basic useful function |
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| 36 | USE date ! date manager |
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| 37 | USE att ! attribute manager |
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| 38 | USE dim ! dimension manager |
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| 39 | USE var ! variable manager |
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| 40 | USE file ! file manager |
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| 41 | USE multi ! multi file manager |
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| 42 | USE iom ! I/O manager |
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| 43 | USE dom ! domain manager |
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| 44 | USE grid ! grid manager |
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| 45 | USE vgrid ! vertical grid manager |
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| 46 | USE extrap ! extrapolation manager |
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| 47 | USE interp ! interpolation manager |
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| 48 | USE filter ! filter manager |
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| 49 | USE mpp ! MPP manager |
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| 50 | USE iom_mpp ! MPP I/O manager |
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| 51 | |
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| 52 | IMPLICIT NONE |
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| 53 | |
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| 54 | |
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| 55 | ! local variable |
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| 56 | CHARACTER(LEN=lc) :: cl_namelist |
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| 57 | CHARACTER(LEN=lc) :: cl_date |
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| 58 | CHARACTER(LEN=lc) :: cl_name |
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| 59 | CHARACTER(LEN=lc) :: cl_data |
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| 60 | |
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| 61 | INTEGER(i4) :: il_narg |
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| 62 | INTEGER(i4) :: il_status |
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| 63 | INTEGER(i4) :: il_fileid |
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| 64 | INTEGER(i4) :: il_attid |
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| 65 | INTEGER(i4) :: il_imin0 |
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| 66 | INTEGER(i4) :: il_imax0 |
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| 67 | INTEGER(i4) :: il_jmin0 |
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| 68 | INTEGER(i4) :: il_jmax0 |
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| 69 | INTEGER(i4) , DIMENSION(ip_maxdim) :: il_rho |
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| 70 | INTEGER(i4) , DIMENSION(2) :: il_xghost |
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| 71 | INTEGER(i4) , DIMENSION(2,2) :: il_offset |
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| 72 | INTEGER(i4) , DIMENSION(2,2,2) :: il_ind |
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| 73 | |
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| 74 | LOGICAL :: ll_exist |
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| 75 | |
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| 76 | TYPE(TFILE) :: tl_coord0 |
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| 77 | TYPE(TFILE) :: tl_coord1 |
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| 78 | TYPE(TFILE) :: tl_bathy1 |
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| 79 | TYPE(TFILE) :: tl_file |
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| 80 | |
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| 81 | TYPE(TDOM) :: tl_dom1 |
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| 82 | TYPE(TDOM) :: tl_dom0 |
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| 83 | |
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| 84 | TYPE(TATT) :: tl_att |
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| 85 | |
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| 86 | TYPE(TVAR) :: tl_depth |
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| 87 | TYPE(TVAR) :: tl_time |
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| 88 | TYPE(TVAR) :: tl_lon |
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| 89 | TYPE(TVAR) :: tl_lat |
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| 90 | TYPE(TVAR) :: tl_tmp |
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| 91 | TYPE(TVAR) , DIMENSION(:) , ALLOCATABLE :: tl_var |
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| 92 | TYPE(TVAR) , DIMENSION(:) , ALLOCATABLE :: tl_level |
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| 93 | |
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| 94 | TYPE(TDIM) , DIMENSION(ip_maxdim) :: tl_dim |
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| 95 | |
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| 96 | TYPE(TMPP) :: tl_mpp |
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| 97 | TYPE(TMPP) :: tl_mppout |
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| 98 | TYPE(TMULTI) :: tl_multi |
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| 99 | |
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| 100 | ! loop indices |
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| 101 | INTEGER(i4) :: ji |
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| 102 | INTEGER(i4) :: jj |
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| 103 | INTEGER(i4) :: jvar |
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| 104 | |
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| 105 | ! namelist variable |
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| 106 | CHARACTER(LEN=lc) :: cn_logfile = 'create_restart.log' |
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| 107 | CHARACTER(LEN=lc) :: cn_verbosity = 'warning' |
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| 108 | |
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| 109 | CHARACTER(LEN=lc) :: cn_varcfg = 'variable.cfg' |
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| 110 | |
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| 111 | CHARACTER(LEN=lc) :: cn_coord0 = '' |
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| 112 | INTEGER(i4) :: in_perio0 = -1 |
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| 113 | |
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| 114 | CHARACTER(LEN=lc) :: cn_coord1 = '' |
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| 115 | CHARACTER(LEN=lc) :: cn_bathy1 = '' |
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| 116 | INTEGER(i4) :: in_perio1 = -1 |
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| 117 | INTEGER(i4) :: in_extrap = 0 |
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| 118 | LOGICAL :: ln_fillclosed = .TRUE. |
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| 119 | |
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| 120 | CHARACTER(LEN=lc), DIMENSION(ig_maxvar) :: cn_varinfo = '' |
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| 121 | CHARACTER(LEN=lc), DIMENSION(ig_maxvar) :: cn_varfile = '' |
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| 122 | |
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| 123 | INTEGER(i4) :: in_imin0 = 0 |
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| 124 | INTEGER(i4) :: in_imax0 = 0 |
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| 125 | INTEGER(i4) :: in_jmin0 = 0 |
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| 126 | INTEGER(i4) :: in_jmax0 = 0 |
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| 127 | INTEGER(i4) :: in_rhoi = 0 |
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| 128 | INTEGER(i4) :: in_rhoj = 0 |
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| 129 | |
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| 130 | CHARACTER(LEN=lc) :: cn_fileout = 'restart' |
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| 131 | INTEGER(i4) :: in_nproc = 0 |
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| 132 | INTEGER(i4) :: in_niproc = 0 |
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| 133 | INTEGER(i4) :: in_njproc = 0 |
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| 134 | CHARACTER(LEN=lc) :: cn_type = '' |
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| 135 | |
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| 136 | !------------------------------------------------------------------- |
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| 137 | |
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| 138 | NAMELIST /namlog/ & !< logger namelist |
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| 139 | & cn_logfile, & !< log file |
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| 140 | & cn_verbosity !< log verbosity |
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| 141 | |
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| 142 | NAMELIST /namcfg/ & !< configuration namelist |
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| 143 | & cn_varcfg !< variable configuration file |
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| 144 | |
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| 145 | NAMELIST /namcrs/ & !< coarse grid namelist |
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| 146 | & cn_coord0, & !< coordinate file |
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| 147 | & in_perio0 !< periodicity index |
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| 148 | |
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| 149 | NAMELIST /namfin/ & !< fine grid namelist |
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| 150 | & cn_coord1, & !< coordinate file |
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| 151 | & cn_bathy1, & !< bathymetry file |
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| 152 | & in_perio1, & !< periodicity index |
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| 153 | & in_extrap, & !< |
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| 154 | & ln_fillclosed !< fill closed sea |
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| 155 | |
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| 156 | NAMELIST /namvar/ & !< variable namelist |
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| 157 | & cn_varinfo, & !< list of variable and interpolation method to be used. (ex: 'votemper:linear','vosaline:cubic' ) |
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| 158 | & cn_varfile !< list of variable file |
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| 159 | |
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| 160 | NAMELIST /namnst/ & !< nesting namelist |
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| 161 | & in_imin0, & !< i-direction lower left point indice |
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| 162 | & in_imax0, & !< i-direction upper right point indice |
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| 163 | & in_jmin0, & !< j-direction lower left point indice |
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| 164 | & in_jmax0, & !< j-direction upper right point indice |
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| 165 | & in_rhoi, & !< refinement factor in i-direction |
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| 166 | & in_rhoj !< refinement factor in j-direction |
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| 167 | |
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| 168 | NAMELIST /namout/ & !< output namlist |
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| 169 | & cn_fileout, & !< fine grid bathymetry file |
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| 170 | & in_nproc, & !< number of processor to be used |
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| 171 | & in_niproc, & !< i-direction number of processor |
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| 172 | & in_njproc, & !< j-direction numebr of processor |
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| 173 | & cn_type !< output type format (dimg, cdf) |
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| 174 | !------------------------------------------------------------------- |
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| 175 | |
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| 176 | !1- namelist |
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| 177 | !1-1 get namelist |
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| 178 | il_narg=COMMAND_ARGUMENT_COUNT() !f03 intrinsec |
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| 179 | IF( il_narg/=1 )THEN |
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| 180 | PRINT *,"ERROR in create_restart: need a namelist" |
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| 181 | STOP |
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| 182 | ELSE |
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| 183 | CALL GET_COMMAND_ARGUMENT(1,cl_namelist) !f03 intrinsec |
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| 184 | ENDIF |
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| 185 | |
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| 186 | !1-2 read namelist |
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| 187 | INQUIRE(FILE=TRIM(cl_namelist), EXIST=ll_exist) |
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| 188 | IF( ll_exist )THEN |
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| 189 | |
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| 190 | il_fileid=fct_getunit() |
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| 191 | |
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| 192 | OPEN( il_fileid, FILE=TRIM(cl_namelist), & |
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| 193 | & FORM='FORMATTED', & |
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| 194 | & ACCESS='SEQUENTIAL', & |
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| 195 | & STATUS='OLD', & |
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| 196 | & ACTION='READ', & |
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| 197 | & IOSTAT=il_status) |
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| 198 | CALL fct_err(il_status) |
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| 199 | IF( il_status /= 0 )THEN |
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| 200 | PRINT *,"ERROR in create_restart: error opening "//TRIM(cl_namelist) |
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| 201 | STOP |
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| 202 | ENDIF |
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| 203 | |
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| 204 | READ( il_fileid, NML = namlog ) |
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| 205 | !1-2-1 define log file |
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| 206 | CALL logger_open(TRIM(cn_logfile),TRIM(cn_verbosity)) |
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| 207 | CALL logger_header() |
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| 208 | |
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| 209 | READ( il_fileid, NML = namcfg ) |
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| 210 | !1-2-2 get variable extra information |
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| 211 | CALL var_def_extra(TRIM(cn_varcfg)) |
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| 212 | |
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| 213 | READ( il_fileid, NML = namcrs ) |
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| 214 | READ( il_fileid, NML = namfin ) |
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| 215 | READ( il_fileid, NML = namvar ) |
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| 216 | !1-2-3 add user change in extra information |
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| 217 | CALL var_chg_extra(cn_varinfo) |
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| 218 | !1-2-4 match variable with file |
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| 219 | tl_multi=multi_init(cn_varfile) |
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| 220 | |
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| 221 | READ( il_fileid, NML = namnst ) |
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| 222 | READ( il_fileid, NML = namout ) |
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| 223 | |
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| 224 | CLOSE( il_fileid, IOSTAT=il_status ) |
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| 225 | CALL fct_err(il_status) |
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| 226 | IF( il_status /= 0 )THEN |
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| 227 | CALL logger_error("CREATE RESTART: closing "//TRIM(cl_namelist)) |
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| 228 | ENDIF |
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| 229 | |
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| 230 | ELSE |
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| 231 | |
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| 232 | PRINT *,"ERROR in create_restart: can't find "//TRIM(cl_namelist) |
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| 233 | |
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| 234 | ENDIF |
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| 235 | |
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| 236 | !2- open files |
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| 237 | IF( cn_coord0 /= '' )THEN |
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| 238 | tl_coord0=file_init(TRIM(cn_coord0),id_perio=in_perio0) |
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| 239 | CALL iom_open(tl_coord0) |
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| 240 | ELSE |
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| 241 | CALL logger_fatal("CREATE RESTART: no coarse grid coordinate found. "//& |
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| 242 | & "check namelist") |
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| 243 | ENDIF |
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| 244 | |
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| 245 | IF( TRIM(cn_coord1) /= '' )THEN |
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| 246 | tl_coord1=file_init(TRIM(cn_coord1),id_perio=in_perio1) |
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| 247 | CALL iom_open(tl_coord1) |
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| 248 | ELSE |
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| 249 | CALL logger_fatal("CREATE RESTART: no fine grid coordinate found. "//& |
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| 250 | & "check namelist") |
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| 251 | ENDIF |
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| 252 | |
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| 253 | IF( TRIM(cn_bathy1) /= '' )THEN |
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| 254 | tl_bathy1=file_init(TRIM(cn_bathy1),id_perio=in_perio1) |
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| 255 | CALL iom_open(tl_bathy1) |
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| 256 | ELSE |
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| 257 | CALL logger_fatal("CREATE RESTART: no fine grid bathymetry found. "//& |
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| 258 | & "check namelist") |
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| 259 | ENDIF |
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| 260 | |
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| 261 | !3- check |
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| 262 | !3-2-1 check refinement factor |
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| 263 | il_rho(:)=1 |
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| 264 | IF( in_rhoi < 1 .OR. in_rhoj < 1 )THEN |
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| 265 | CALL logger_error("CREATE RESTART: invalid refinement factor."//& |
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| 266 | & " check namelist "//TRIM(cl_namelist)) |
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| 267 | ELSE |
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| 268 | il_rho(jp_I)=in_rhoi |
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| 269 | il_rho(jp_J)=in_rhoj |
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| 270 | ENDIF |
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| 271 | |
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| 272 | IF( cn_coord0 /= '' )THEN !.OR. cn_bathy0 /= '' )THEN |
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| 273 | |
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| 274 | !3-1 check namelist |
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| 275 | IF( in_imin0 < 1 .OR. in_imax0 < 1 .OR. in_jmin0 < 1 .OR. in_jmax0 < 1)THEN |
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| 276 | ! compute coarse grid indices around fine grid |
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| 277 | IF( cn_coord0 /= '' )THEN |
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| 278 | il_ind(:,:,:)=grid_get_coarse_index(tl_coord0, tl_coord1 ) |
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| 279 | ENDIF |
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| 280 | |
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| 281 | il_imin0=il_ind(1,1,1) ; il_imax0=il_ind(1,2,1) |
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| 282 | il_jmin0=il_ind(2,1,1) ; il_jmax0=il_ind(2,2,1) |
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| 283 | |
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| 284 | il_offset(:,:)=il_ind(:,:,2) |
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| 285 | ELSE |
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| 286 | il_imin0=in_imin0 ; il_imax0=in_imax0 |
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| 287 | il_jmin0=in_jmin0 ; il_jmax0=in_jmax0 |
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| 288 | |
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| 289 | il_offset(1,:)=FLOOR(REAL(il_rho(jp_I)-1,dp)*0.5) |
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| 290 | il_offset(2,:)=FLOOR(REAL(il_rho(jp_J)-1,dp)*0.5) |
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| 291 | ENDIF |
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| 292 | |
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| 293 | !3-2 check domain validity |
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| 294 | IF( cn_coord0 /= '' )THEN |
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| 295 | CALL grid_check_dom(tl_coord0, il_imin0, il_imax0, il_jmin0, il_jmax0) |
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| 296 | ENDIF |
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| 297 | |
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| 298 | !3-3 check coordinate file |
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| 299 | IF( cn_coord0 /= '' )THEN |
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| 300 | CALL grid_check_coincidence( tl_coord0, tl_coord1, & |
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| 301 | & il_imin0, il_imax0, & |
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| 302 | & il_jmin0, il_jmax0, & |
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| 303 | & il_rho(:) ) |
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| 304 | ENDIF |
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| 305 | |
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| 306 | ENDIF |
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| 307 | |
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| 308 | ! compute level |
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| 309 | ALLOCATE(tl_level(ig_npoint)) |
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| 310 | tl_level(:)=vgrid_get_level(tl_bathy1, cl_namelist ) |
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| 311 | |
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| 312 | ! remove ghost cell |
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| 313 | il_xghost(:)=grid_get_ghost(tl_bathy1) |
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| 314 | |
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| 315 | DO ji=1,ig_npoint |
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| 316 | CALL grid_del_ghost(tl_level(ji), il_xghost(1), il_xghost(2)) |
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| 317 | ENDDO |
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| 318 | |
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| 319 | ! close |
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| 320 | CALL iom_close(tl_bathy1) |
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| 321 | |
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| 322 | !4- work on variables |
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| 323 | IF( .NOT. ASSOCIATED(tl_multi%t_file) )THEN |
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| 324 | CALL logger_error("CREATE RESTART: no file to work on. "//& |
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| 325 | & "check cn_varfile in namelist.") |
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| 326 | ELSE |
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| 327 | ALLOCATE( tl_var( tl_multi%i_nvar ) ) |
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| 328 | jvar=0 |
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| 329 | ! for each file |
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| 330 | DO ji=1,tl_multi%i_nfile |
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| 331 | WRITE(cl_data,'(a,i2.2)') 'data_',jvar+1 |
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| 332 | |
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| 333 | IF( .NOT. ASSOCIATED(tl_multi%t_file(ji)%t_var) )THEN |
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| 334 | |
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| 335 | CALL logger_error("CREATE RESTART: no variable to work on for "//& |
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| 336 | & "file "//TRIM(tl_multi%t_file(ji)%c_name)//& |
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| 337 | & ". check cn_varfile in namelist.") |
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| 338 | |
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| 339 | ELSEIF( TRIM(tl_multi%t_file(ji)%c_name) == TRIM(cl_data) )THEN |
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| 340 | !4-1 use input matrix to fill variable |
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| 341 | |
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| 342 | ! for each variable initialise from matrix |
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| 343 | DO jj=1,tl_multi%t_file(ji)%i_nvar |
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| 344 | jvar=jvar+1 |
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| 345 | tl_tmp=tl_multi%t_file(ji)%t_var(jj) |
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| 346 | !4-1-1 fill value with matrix data |
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| 347 | ! pb voir comment gerer nb de dimension |
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| 348 | tl_var(jvar)=create_restart_matrix(tl_tmp, tl_coord1) |
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| 349 | |
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| 350 | !4-1-2 use mask |
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| 351 | CALL create_restart_mask(tl_var(jvar), tl_level(:)) |
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| 352 | ENDDO |
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| 353 | |
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| 354 | ELSE |
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| 355 | !4-2 use file to fill variable |
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| 356 | |
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| 357 | ! open file |
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| 358 | tl_file=file_init(TRIM(tl_multi%t_file(ji)%c_name)) |
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| 359 | CALL iom_open(tl_file) |
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| 360 | |
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| 361 | ! get or check depth value |
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| 362 | IF( tl_file%i_depthid /= 0 )THEN |
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| 363 | IF( ASSOCIATED(tl_depth%d_value) )THEN |
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| 364 | IF( ANY( tl_depth%d_value(:,:,:,:) /= & |
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| 365 | & tl_tmp%d_value(:,:,:,:) ) )THEN |
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| 366 | CALL logger_fatal("CREATE RESTART: depth value from "//& |
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| 367 | & TRIM(tl_multi%t_file(ji)%c_name)//" not conform "//& |
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| 368 | & " to those from former file(s).") |
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| 369 | ENDIF |
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| 370 | ELSE |
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| 371 | tl_depth=iom_read_var(tl_file,tl_file%i_depthid) |
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| 372 | ENDIF |
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| 373 | ENDIF |
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| 374 | |
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| 375 | ! get or check time value |
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| 376 | IF( tl_file%i_timeid /= 0 )THEN |
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| 377 | IF( ASSOCIATED(tl_time%d_value) )THEN |
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| 378 | IF( ANY( tl_time%d_value(:,:,:,:) /= & |
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| 379 | & tl_tmp%d_value(:,:,:,:) ) )THEN |
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| 380 | CALL logger_fatal("CREATE RESTART: time value from "//& |
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| 381 | & TRIM(tl_multi%t_file(ji)%c_name)//" not conform "//& |
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| 382 | & " to those from former file(s).") |
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| 383 | ENDIF |
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| 384 | ELSE |
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| 385 | tl_time=iom_read_var(tl_file,tl_file%i_timeid) |
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| 386 | ENDIF |
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| 387 | ENDIF |
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| 388 | |
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| 389 | IF( ANY( tl_file%t_dim(1:2)%i_len /= & |
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| 390 | & tl_coord0%t_dim(1:2)%i_len) )THEN |
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| 391 | !4-2-1 extract value from fine grid |
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| 392 | |
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| 393 | !4-2-1-1 compute domain on fine grid |
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| 394 | tl_dom1=create__restart_get_dom_coord(tl_file, tl_coord1) |
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| 395 | |
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| 396 | ! open mpp file on domain |
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| 397 | !4-2-1-2 init mpp structure |
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| 398 | tl_mpp=mpp_init(tl_file) |
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| 399 | |
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| 400 | !4-2-1-3 get processor to be used |
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| 401 | CALL mpp_get_use( tl_mpp, tl_dom1 ) |
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| 402 | !4-2-1-4 open mpp files |
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| 403 | CALL iom_mpp_open(tl_mpp) |
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| 404 | |
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| 405 | ! for each variable of this file |
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| 406 | DO jj=1,tl_multi%t_file(ji)%i_nvar |
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| 407 | jvar=jvar+1 |
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| 408 | cl_name=tl_multi%t_file(ji)%t_var(jj)%c_name |
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| 409 | !4-2-1-5 read variable over domain |
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| 410 | tl_var(jvar)=iom_mpp_read_var( tl_mpp, TRIM(cl_name), & |
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| 411 | & td_dom=tl_dom1 ) |
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| 412 | |
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| 413 | !4-2-1-7 add attribute to variable |
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| 414 | tl_att=att_init('src_file',TRIM(fct_basename(tl_mpp%c_name))) |
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| 415 | CALL var_move_att(tl_var(jvar), tl_att) |
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| 416 | |
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| 417 | ! clean structure |
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| 418 | CALL att_clean(tl_att) |
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| 419 | |
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| 420 | !4-2-1-8 use mask |
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| 421 | CALL create_restart_mask(tl_var(jvar), tl_level(:)) |
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| 422 | |
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| 423 | !4-2-1-9 add ghost cell |
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| 424 | CALL grid_add_ghost( tl_var(jvar), & |
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| 425 | & tl_dom1%i_ighost,tl_dom1%i_jghost ) |
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| 426 | |
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| 427 | ENDDO |
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| 428 | |
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| 429 | !4-2-1-2 close mpp file |
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| 430 | CALL iom_mpp_close(tl_mpp) |
---|
| 431 | ! clean structure |
---|
| 432 | CALL mpp_clean(tl_mpp) |
---|
| 433 | CALL dom_clean(tl_dom1) |
---|
| 434 | |
---|
| 435 | ELSE |
---|
| 436 | !4-2-2 get value from coarse grid |
---|
| 437 | |
---|
| 438 | !4-2-2-1 compute domain on coarse grid |
---|
| 439 | tl_dom0=create__restart_get_dom_index(tl_file, il_imin0, il_jmin0, & |
---|
| 440 | & il_imax0, il_jmax0) |
---|
| 441 | |
---|
| 442 | !4-2-2-2 add extra band (if possible) to compute interpolation |
---|
| 443 | CALL dom_add_extra(tl_dom0) |
---|
| 444 | |
---|
| 445 | ! open mpp file on domain |
---|
| 446 | !4-2-2-3 init mpp structure |
---|
| 447 | tl_mpp=mpp_init(tl_file) |
---|
| 448 | |
---|
| 449 | !4-2-2-4 get processor to be used |
---|
| 450 | CALL mpp_get_use( tl_mpp, tl_dom0 ) |
---|
| 451 | |
---|
| 452 | !4-2-2-5 open mpp files |
---|
| 453 | CALL iom_mpp_open(tl_mpp) |
---|
| 454 | |
---|
| 455 | ! for each variable of this file |
---|
| 456 | DO jj=1,tl_multi%t_file(ji)%i_nvar |
---|
| 457 | |
---|
| 458 | jvar=jvar+1 |
---|
| 459 | cl_name=tl_multi%t_file(ji)%t_var(jj)%c_name |
---|
| 460 | print *,'work on ',trim(cl_name) |
---|
| 461 | !4-2-2-6 read variable over domain |
---|
| 462 | tl_var(jvar)=iom_mpp_read_var( tl_mpp, TRIM(cl_name), & |
---|
| 463 | & td_dom=tl_dom0 ) |
---|
| 464 | |
---|
| 465 | !4-2-2-7 interpolate variable |
---|
| 466 | CALL create_restart_interp(tl_var(jvar), tl_level(:), & |
---|
| 467 | & il_rho(:), & |
---|
| 468 | & id_offset=il_offset(:,:)) |
---|
| 469 | |
---|
| 470 | !tl_att=att_init('add_offset',0.) |
---|
| 471 | !CALL var_move_att(tl_var(jvar), tl_att) |
---|
| 472 | !tl_att=att_init('scale_factor',1.) |
---|
| 473 | !CALL var_move_att(tl_var(jvar), tl_att) |
---|
| 474 | |
---|
| 475 | !4-2-2-8 remove extraband added to domain |
---|
| 476 | CALL dom_del_extra( tl_var(jvar), tl_dom0, il_rho(:) ) |
---|
| 477 | |
---|
| 478 | !4-2-2-10 add attribute to variable |
---|
| 479 | tl_att=att_init('src_file',TRIM(fct_basename(tl_mpp%c_name))) |
---|
| 480 | CALL var_move_att(tl_var(jvar), tl_att) |
---|
| 481 | |
---|
| 482 | ! clean structure |
---|
| 483 | CALL att_clean(tl_att) |
---|
| 484 | |
---|
| 485 | !4-2-2-11 use mask |
---|
| 486 | CALL create_restart_mask(tl_var(jvar), tl_level(:)) |
---|
| 487 | |
---|
| 488 | !4-2-2-12 add ghost cell |
---|
| 489 | CALL grid_add_ghost( tl_var(jvar), & |
---|
| 490 | & tl_dom0%i_ighost,tl_dom0%i_jghost ) |
---|
| 491 | |
---|
| 492 | ENDDO |
---|
| 493 | |
---|
| 494 | !4-2-2-2 close mpp file |
---|
| 495 | CALL iom_mpp_close(tl_mpp) |
---|
| 496 | ! clean structure |
---|
| 497 | CALL mpp_clean(tl_mpp) |
---|
| 498 | CALL dom_clean(tl_dom0) |
---|
| 499 | |
---|
| 500 | ENDIF |
---|
| 501 | |
---|
| 502 | ! close file |
---|
| 503 | CALL iom_close(tl_file) |
---|
| 504 | ! clean structure |
---|
| 505 | CALL file_clean(tl_file) |
---|
| 506 | ENDIF |
---|
| 507 | ENDDO |
---|
| 508 | ENDIF |
---|
| 509 | |
---|
| 510 | !5- use additional request |
---|
| 511 | DO jvar=1,tl_multi%i_nvar |
---|
| 512 | |
---|
| 513 | !5-1 forced min and max value |
---|
| 514 | CALL var_limit_value(tl_var(jvar)) |
---|
| 515 | |
---|
| 516 | !5-2 filter |
---|
| 517 | CALL filter_fill_value(tl_var(jvar)) |
---|
| 518 | |
---|
| 519 | !5-3 extrapolate |
---|
| 520 | CALL extrap_fill_value(tl_var(jvar), id_iext=in_extrap, & |
---|
| 521 | & id_jext=in_extrap, & |
---|
| 522 | & id_kext=in_extrap) |
---|
| 523 | |
---|
| 524 | ENDDO |
---|
| 525 | |
---|
| 526 | !6- create file |
---|
| 527 | IF( in_niproc == 0 .AND. & |
---|
| 528 | & in_njproc == 0 .AND. & |
---|
| 529 | & in_nproc == 0 )THEN |
---|
| 530 | in_niproc = 1 |
---|
| 531 | in_njproc = 1 |
---|
| 532 | in_nproc = 1 |
---|
| 533 | ENDIF |
---|
| 534 | tl_mppout=mpp_init( TRIM(cn_fileout), tl_var(1), & |
---|
| 535 | & in_niproc, in_njproc, in_nproc, & |
---|
| 536 | & cd_type=cn_type) |
---|
| 537 | |
---|
| 538 | !6-1 add dimension |
---|
| 539 | tl_dim(:)=var_max_dim(tl_var(:)) |
---|
| 540 | |
---|
| 541 | DO ji=1,ip_maxdim |
---|
| 542 | IF( tl_dim(ji)%l_use )THEN |
---|
| 543 | CALL mpp_move_dim(tl_mppout, tl_dim(ji)) |
---|
| 544 | SELECT CASE(TRIM(tl_dim(ji)%c_sname)) |
---|
| 545 | CASE('z','t') |
---|
| 546 | DO jj=1,tl_mppout%i_nproc |
---|
| 547 | CALL file_add_dim(tl_mppout%t_proc(jj), tl_dim(ji)) |
---|
| 548 | ENDDO |
---|
| 549 | END SELECT |
---|
| 550 | ENDIF |
---|
| 551 | ENDDO |
---|
| 552 | |
---|
| 553 | !6-2 add variables |
---|
| 554 | |
---|
| 555 | !IF( ALL( tl_dim(1:2)%l_use ) )THEN |
---|
| 556 | ! ! add longitude |
---|
| 557 | ! tl_lon=iom_read_var(tl_coord1,'longitude') |
---|
| 558 | |
---|
| 559 | ! CALL mpp_add_var(tl_mppout, tl_lon) |
---|
| 560 | ! CALL var_clean(tl_lon) |
---|
| 561 | |
---|
| 562 | ! ! add latitude |
---|
| 563 | ! tl_lat=iom_read_var(tl_coord1,'latitude') |
---|
| 564 | |
---|
| 565 | ! CALL mpp_add_var(tl_mppout, tl_lat) |
---|
| 566 | ! CALL var_clean(tl_lat) |
---|
| 567 | !ENDIF |
---|
| 568 | |
---|
| 569 | !IF( tl_dim(3)%l_use )THEN |
---|
| 570 | ! ! add depth |
---|
| 571 | ! CALL mpp_add_var(tl_mppout, tl_depth) |
---|
| 572 | ! CALL var_clean(tl_depth) |
---|
| 573 | !ENDIF |
---|
| 574 | |
---|
| 575 | !IF( tl_dim(4)%l_use )THEN |
---|
| 576 | ! ! add time |
---|
| 577 | ! CALL mpp_add_var(tl_mppout, tl_time) |
---|
| 578 | ! CALL var_clean(tl_time) |
---|
| 579 | !ENDIF |
---|
| 580 | |
---|
| 581 | ! add other variable |
---|
| 582 | DO jvar=1,tl_multi%i_nvar |
---|
| 583 | CALL mpp_add_var(tl_mppout, tl_var(jvar)) |
---|
| 584 | CALL var_clean(tl_var(jvar)) |
---|
| 585 | ENDDO |
---|
| 586 | |
---|
| 587 | DO ji=1,4 |
---|
| 588 | CALL mpp_add_var(tl_mppout,tl_level(ji)) |
---|
| 589 | ENDDO |
---|
| 590 | |
---|
| 591 | !6-3 add some attribute |
---|
| 592 | tl_att=att_init("Created_by","SIREN create_restart") |
---|
| 593 | CALL mpp_add_att(tl_mppout, tl_att) |
---|
| 594 | |
---|
| 595 | cl_date=date_print(date_now()) |
---|
| 596 | tl_att=att_init("Creation_date",TRIM(cl_date)) |
---|
| 597 | CALL mpp_add_att(tl_mppout, tl_att) |
---|
| 598 | |
---|
| 599 | ! add attribute periodicity |
---|
| 600 | il_attid=0 |
---|
| 601 | IF( ASSOCIATED(tl_mppout%t_proc(1)%t_att) )THEN |
---|
| 602 | il_attid=att_get_id(tl_mppout%t_proc(1)%t_att(:),'periodicity') |
---|
| 603 | ENDIF |
---|
| 604 | IF( tl_coord1%i_perio >= 0 .AND. il_attid == 0 )THEN |
---|
| 605 | tl_att=att_init('periodicity',tl_coord1%i_perio) |
---|
| 606 | CALL mpp_add_att(tl_mppout,tl_att) |
---|
| 607 | ENDIF |
---|
| 608 | |
---|
| 609 | il_attid=0 |
---|
| 610 | IF( ASSOCIATED(tl_mppout%t_proc(1)%t_att) )THEN |
---|
| 611 | il_attid=att_get_id(tl_mppout%t_proc(1)%t_att(:),'ew_overlap') |
---|
| 612 | ENDIF |
---|
| 613 | IF( tl_coord1%i_ew >= 0 .AND. il_attid == 0 )THEN |
---|
| 614 | tl_att=att_init('ew_overlap',tl_coord1%i_ew) |
---|
| 615 | CALL mpp_add_att(tl_mppout,tl_att) |
---|
| 616 | ENDIF |
---|
| 617 | |
---|
| 618 | !6-4 create file |
---|
| 619 | CALL iom_mpp_create(tl_mppout) |
---|
| 620 | |
---|
| 621 | !6-5 write file |
---|
| 622 | CALL iom_mpp_write_file(tl_mppout) |
---|
| 623 | |
---|
| 624 | !6-6 close file |
---|
| 625 | CALL iom_mpp_close(tl_mppout) |
---|
| 626 | IF( cn_coord0 /= '' ) CALL iom_close(tl_coord0) |
---|
| 627 | |
---|
| 628 | !7- clean |
---|
| 629 | DEALLOCATE(tl_var) |
---|
| 630 | |
---|
| 631 | CALL mpp_clean(tl_mppout) |
---|
| 632 | CALL file_clean(tl_coord1) |
---|
| 633 | CALL file_clean(tl_coord0) |
---|
| 634 | |
---|
| 635 | ! close log file |
---|
| 636 | CALL logger_footer() |
---|
| 637 | CALL logger_close() |
---|
| 638 | |
---|
| 639 | !> @endcode |
---|
| 640 | CONTAINS |
---|
| 641 | !------------------------------------------------------------------- |
---|
| 642 | !> @brief |
---|
| 643 | !> |
---|
| 644 | !> @details |
---|
| 645 | !> |
---|
| 646 | !> @author J.Paul |
---|
| 647 | !> - Nov, 2013- Initial Version |
---|
| 648 | !> |
---|
| 649 | !------------------------------------------------------------------- |
---|
| 650 | !> @code |
---|
| 651 | FUNCTION create_restart_level(td_level1) |
---|
| 652 | IMPLICIT NONE |
---|
| 653 | ! Argument |
---|
| 654 | TYPE(TFILE), INTENT(IN) :: td_level1 |
---|
| 655 | |
---|
| 656 | ! function |
---|
| 657 | TYPE(TVAR), DIMENSION(4) :: create_restart_level |
---|
| 658 | |
---|
| 659 | ! local variable |
---|
| 660 | TYPE(TFILE) :: tl_level1 |
---|
| 661 | TYPE(TVAR), DIMENSION(4) :: tl_var |
---|
| 662 | TYPE(TMPP) :: tl_mpplevel1 |
---|
| 663 | |
---|
| 664 | ! loop indices |
---|
| 665 | !---------------------------------------------------------------- |
---|
| 666 | |
---|
| 667 | !0- compute domain |
---|
| 668 | tl_dom1=dom_init(td_level1) |
---|
| 669 | |
---|
| 670 | !1 init mpp structure |
---|
| 671 | tl_level1=td_level1 |
---|
| 672 | tl_mpplevel1=mpp_init(tl_level1) |
---|
| 673 | |
---|
| 674 | CALL file_clean(tl_level1) |
---|
| 675 | |
---|
| 676 | !2 get processor to be used |
---|
| 677 | CALL mpp_get_use( tl_mpplevel1, tl_dom1 ) |
---|
| 678 | |
---|
| 679 | !3 open mpp files |
---|
| 680 | CALL iom_mpp_open(tl_mpplevel1) |
---|
| 681 | tl_var(jp_T)=iom_mpp_read_var(tl_mpplevel1,'tlevel',td_dom=tl_dom1) |
---|
| 682 | tl_var(jp_U)=iom_mpp_read_var(tl_mpplevel1,'ulevel',td_dom=tl_dom1) |
---|
| 683 | tl_var(jp_V)=iom_mpp_read_var(tl_mpplevel1,'vlevel',td_dom=tl_dom1) |
---|
| 684 | tl_var(jp_F)=iom_mpp_read_var(tl_mpplevel1,'flevel',td_dom=tl_dom1) |
---|
| 685 | |
---|
| 686 | !4 save result |
---|
| 687 | create_restart_level(:)=tl_var(:) |
---|
| 688 | |
---|
| 689 | !5 clean |
---|
| 690 | CALL iom_mpp_close(tl_mpplevel1) |
---|
| 691 | CALL mpp_clean(tl_mpplevel1) |
---|
| 692 | |
---|
| 693 | END FUNCTION create_restart_level |
---|
| 694 | !> @endcode |
---|
| 695 | !------------------------------------------------------------------- |
---|
| 696 | !> @brief |
---|
| 697 | !> This function create variable, filled with matrix value |
---|
| 698 | !> |
---|
| 699 | !> @details |
---|
| 700 | !> A variable is create with the same name that the input variable, |
---|
| 701 | !> and with dimension of the coordinate file. |
---|
| 702 | !> Then the variable table of value is split into equal subdomain. |
---|
| 703 | !> Each subdomain is fill with the linked value of the matrix. |
---|
| 704 | !> |
---|
| 705 | !> @author J.Paul |
---|
| 706 | !> - Nov, 2013- Initial Version |
---|
| 707 | !> |
---|
| 708 | !> @param[in] td_var : variable structure |
---|
| 709 | !> @param[in] td_coord : coordinate |
---|
| 710 | !> @return variable structure |
---|
| 711 | !------------------------------------------------------------------- |
---|
| 712 | !> @code |
---|
| 713 | FUNCTION create_restart_matrix(td_var, td_coord) |
---|
| 714 | IMPLICIT NONE |
---|
| 715 | ! Argument |
---|
| 716 | TYPE(TVAR) , INTENT(IN) :: td_var |
---|
| 717 | TYPE(TFILE), INTENT(IN) :: td_coord |
---|
| 718 | |
---|
| 719 | ! function |
---|
| 720 | TYPE(TVAR) :: create_restart_matrix |
---|
| 721 | |
---|
| 722 | ! local variable |
---|
| 723 | INTEGER(i4) :: il_ighost |
---|
| 724 | INTEGER(i4) :: il_jghost |
---|
| 725 | INTEGER(i4) , DIMENSION(2) :: il_xghost |
---|
| 726 | INTEGER(i4) , DIMENSION(3) :: il_dim |
---|
| 727 | INTEGER(i4) , DIMENSION(3) :: il_size |
---|
| 728 | INTEGER(i4) , DIMENSION(3) :: il_rest |
---|
| 729 | |
---|
| 730 | INTEGER(i4) , DIMENSION(:) , ALLOCATABLE :: il_ishape |
---|
| 731 | INTEGER(i4) , DIMENSION(:) , ALLOCATABLE :: il_jshape |
---|
| 732 | INTEGER(i4) , DIMENSION(:) , ALLOCATABLE :: il_kshape |
---|
| 733 | |
---|
| 734 | REAL(dp) , DIMENSION(:,:,:,:), ALLOCATABLE :: dl_value |
---|
| 735 | |
---|
| 736 | TYPE(TVAR) :: tl_lon |
---|
| 737 | TYPE(TVAR) :: tl_lat |
---|
| 738 | TYPE(TVAR) :: tl_var |
---|
| 739 | TYPE(TDIM) , DIMENSION(ip_maxdim) :: tl_dim |
---|
| 740 | |
---|
| 741 | ! loop indices |
---|
| 742 | INTEGER(i4) :: ji |
---|
| 743 | INTEGER(i4) :: jj |
---|
| 744 | INTEGER(i4) :: jk |
---|
| 745 | !---------------------------------------------------------------- |
---|
| 746 | |
---|
| 747 | !1- read output grid |
---|
| 748 | tl_lon=iom_read_var(td_coord,'longitude') |
---|
| 749 | tl_lat=iom_read_var(td_coord,'latitude') |
---|
| 750 | |
---|
| 751 | !2- look for ghost cell |
---|
| 752 | il_xghost(:)=grid_get_ghost( tl_lon, tl_lat ) |
---|
| 753 | |
---|
| 754 | il_ighost=il_xghost(1)*ig_ghost |
---|
| 755 | il_jghost=il_xghost(2)*ig_ghost |
---|
| 756 | |
---|
| 757 | !3- write value on grid |
---|
| 758 | !3-1 get matrix dimension |
---|
| 759 | il_dim(:)=td_var%t_dim(1:3)%i_len |
---|
| 760 | !3-2 output dimension |
---|
| 761 | tl_dim(:)=tl_lon%t_dim(:) |
---|
| 762 | |
---|
| 763 | ! remove ghost cell |
---|
| 764 | tl_dim(1)%i_len=tl_dim(1)%i_len - 2*il_xghost(1)*ig_ghost |
---|
| 765 | tl_dim(2)%i_len=tl_dim(2)%i_len - 2*il_xghost(2)*ig_ghost |
---|
| 766 | |
---|
| 767 | !3-3 split output domain in N subdomain depending of matrix dimension |
---|
| 768 | il_size(:) = tl_dim(1:3)%i_len / il_dim(:) |
---|
| 769 | il_rest(:) = MOD(tl_dim(1:3)%i_len, il_dim(:)) |
---|
| 770 | |
---|
| 771 | ALLOCATE( il_ishape(il_dim(1)+1) ) |
---|
| 772 | il_ishape(:)=0 |
---|
| 773 | DO ji=2,il_dim(1)+1 |
---|
| 774 | il_ishape(ji)=il_ishape(ji-1)+il_size(1) |
---|
| 775 | ENDDO |
---|
| 776 | ! add rest to last cell |
---|
| 777 | il_ishape(il_dim(1)+1)=il_ishape(il_dim(1)+1)+il_rest(1) |
---|
| 778 | |
---|
| 779 | |
---|
| 780 | ALLOCATE( il_jshape(il_dim(2)+1) ) |
---|
| 781 | il_jshape(:)=0 |
---|
| 782 | DO jj=2,il_dim(2)+1 |
---|
| 783 | il_jshape(jj)=il_jshape(jj-1)+il_size(2) |
---|
| 784 | ENDDO |
---|
| 785 | ! add rest to last cell |
---|
| 786 | il_jshape(il_dim(2)+1)=il_jshape(il_dim(2)+1)+il_rest(2) |
---|
| 787 | |
---|
| 788 | ALLOCATE( il_kshape(il_dim(3)+1) ) |
---|
| 789 | il_kshape(:)=0 |
---|
| 790 | DO jk=2,il_dim(3)+1 |
---|
| 791 | il_kshape(jk)=il_kshape(jk-1)+il_size(3) |
---|
| 792 | ENDDO |
---|
| 793 | ! add rest to last cell |
---|
| 794 | il_kshape(il_dim(3)+1)=il_kshape(il_dim(3)+1)+il_rest(3) |
---|
| 795 | |
---|
| 796 | !3-3 write ouput table of value |
---|
| 797 | ALLOCATE(dl_value( tl_dim(1)%i_len, & |
---|
| 798 | & tl_dim(2)%i_len, & |
---|
| 799 | & tl_dim(3)%i_len, & |
---|
| 800 | & tl_dim(4)%i_len) ) |
---|
| 801 | |
---|
| 802 | dl_value(:,:,:,:)=0 |
---|
| 803 | |
---|
| 804 | DO jk=2,il_dim(3)+1 |
---|
| 805 | DO jj=2,il_dim(2)+1 |
---|
| 806 | DO ji=2,il_dim(1)+1 |
---|
| 807 | |
---|
| 808 | dl_value( 1+il_ishape(ji-1):il_ishape(ji), & |
---|
| 809 | & 1+il_jshape(jj-1):il_jshape(jj), & |
---|
| 810 | & 1+il_kshape(jk-1):il_kshape(jk), & |
---|
| 811 | & 1 ) = td_var%d_value(ji-1,jj-1,jk-1,1) |
---|
| 812 | |
---|
| 813 | ENDDO |
---|
| 814 | ENDDO |
---|
| 815 | ENDDO |
---|
| 816 | |
---|
| 817 | !3-4 initialise variable with value |
---|
| 818 | tl_var=var_init(TRIM(td_var%c_name),dl_value(:,:,:,:)) |
---|
| 819 | |
---|
| 820 | DEALLOCATE(dl_value) |
---|
| 821 | |
---|
| 822 | !4- add ghost cell |
---|
| 823 | CALL grid_add_ghost(tl_var,il_ighost,il_jghost) |
---|
| 824 | |
---|
| 825 | !5- save result |
---|
| 826 | create_restart_matrix=tl_var |
---|
| 827 | |
---|
| 828 | END FUNCTION create_restart_matrix |
---|
| 829 | !> @endcode |
---|
| 830 | !------------------------------------------------------------------- |
---|
| 831 | !> @brief |
---|
| 832 | !> |
---|
| 833 | !> @details |
---|
| 834 | !> |
---|
| 835 | !> @author J.Paul |
---|
| 836 | !> - Nov, 2013- Initial Version |
---|
| 837 | !> |
---|
| 838 | !------------------------------------------------------------------- |
---|
| 839 | !> @code |
---|
| 840 | FUNCTION create__restart_get_dom_coord( td_file, td_coord, & |
---|
| 841 | & id_rho ) |
---|
| 842 | IMPLICIT NONE |
---|
| 843 | ! Argument |
---|
| 844 | TYPE(TFILE), INTENT(IN) :: td_file |
---|
| 845 | TYPE(TFILE), INTENT(IN) :: td_coord |
---|
| 846 | INTEGER(i4), DIMENSION(:), INTENT(IN), OPTIONAL :: id_rho |
---|
| 847 | |
---|
| 848 | ! function |
---|
| 849 | TYPE(TDOM) :: create__restart_get_dom_coord |
---|
| 850 | |
---|
| 851 | ! local variable |
---|
| 852 | INTEGER(i4) :: il_pivot |
---|
| 853 | INTEGER(i4) :: il_perio |
---|
| 854 | |
---|
| 855 | INTEGER(i4) :: il_imin |
---|
| 856 | INTEGER(i4) :: il_imax |
---|
| 857 | INTEGER(i4) :: il_jmin |
---|
| 858 | INTEGER(i4) :: il_jmax |
---|
| 859 | |
---|
| 860 | INTEGER(i4), DIMENSION(2,2,2) :: il_ind |
---|
| 861 | |
---|
| 862 | TYPE(TFILE) :: tl_file |
---|
| 863 | |
---|
| 864 | TYPE(TDOM) :: tl_dom |
---|
| 865 | ! loop indices |
---|
| 866 | !---------------------------------------------------------------- |
---|
| 867 | |
---|
| 868 | tl_file=td_file |
---|
| 869 | !1- open file |
---|
| 870 | CALL iom_open(tl_file) |
---|
| 871 | |
---|
| 872 | ! get periodicity |
---|
| 873 | il_pivot=grid_get_pivot(tl_file) |
---|
| 874 | il_perio=grid_get_perio(tl_file,il_pivot) |
---|
| 875 | |
---|
| 876 | tl_file%i_perio=il_perio |
---|
| 877 | |
---|
| 878 | !2- compute file grid indices around coord grid |
---|
| 879 | il_ind(:,:,:)=grid_get_coarse_index(tl_file, td_coord ) |
---|
| 880 | |
---|
| 881 | il_imin=il_ind(1,1,1) ; il_imax=il_ind(1,2,1) |
---|
| 882 | il_jmin=il_ind(2,1,1) ; il_jmax=il_ind(2,2,1) |
---|
| 883 | |
---|
| 884 | !3- check grid coincidence |
---|
| 885 | CALL grid_check_coincidence( tl_file, td_coord, & |
---|
| 886 | & il_imin, il_imax, & |
---|
| 887 | & il_jmin, il_jmax, & |
---|
| 888 | & id_rho(:) ) |
---|
| 889 | |
---|
| 890 | !4- compute domain |
---|
| 891 | tl_dom=dom_init(tl_file, & |
---|
| 892 | & il_imin, il_imax, & |
---|
| 893 | & il_jmin, il_jmax) |
---|
| 894 | |
---|
| 895 | ! close file |
---|
| 896 | CALL iom_close(tl_file) |
---|
| 897 | |
---|
| 898 | ! save result |
---|
| 899 | create__restart_get_dom_coord=tl_dom |
---|
| 900 | |
---|
| 901 | END FUNCTION create__restart_get_dom_coord |
---|
| 902 | !> @endcode |
---|
| 903 | !------------------------------------------------------------------- |
---|
| 904 | !> @brief |
---|
| 905 | !> |
---|
| 906 | !> @details |
---|
| 907 | !> |
---|
| 908 | !> @author J.Paul |
---|
| 909 | !> - Nov, 2013- Initial Version |
---|
| 910 | !> |
---|
| 911 | !------------------------------------------------------------------- |
---|
| 912 | !> @code |
---|
| 913 | FUNCTION create__restart_get_dom_index( td_file, id_imin, id_jmin, & |
---|
| 914 | & id_imax, id_jmax ) |
---|
| 915 | IMPLICIT NONE |
---|
| 916 | ! Argument |
---|
| 917 | TYPE(TFILE), INTENT(IN) :: td_file |
---|
| 918 | INTEGER(i4), INTENT(IN) :: id_imin |
---|
| 919 | INTEGER(i4), INTENT(IN) :: id_imax |
---|
| 920 | INTEGER(i4), INTENT(IN) :: id_jmin |
---|
| 921 | INTEGER(i4), INTENT(IN) :: id_jmax |
---|
| 922 | |
---|
| 923 | ! function |
---|
| 924 | TYPE(TDOM) :: create__restart_get_dom_index |
---|
| 925 | |
---|
| 926 | ! local variable |
---|
| 927 | INTEGER(i4) :: il_pivot |
---|
| 928 | INTEGER(i4) :: il_perio |
---|
| 929 | |
---|
| 930 | TYPE(TFILE) :: tl_file |
---|
| 931 | |
---|
| 932 | TYPE(TDOM) :: tl_dom |
---|
| 933 | ! loop indices |
---|
| 934 | !---------------------------------------------------------------- |
---|
| 935 | |
---|
| 936 | ! init |
---|
| 937 | tl_file=td_file |
---|
| 938 | !1- open file |
---|
| 939 | CALL iom_open(tl_file) |
---|
| 940 | |
---|
| 941 | ! get periodicity |
---|
| 942 | il_pivot=grid_get_pivot(tl_file) |
---|
| 943 | il_perio=grid_get_perio(tl_file,il_pivot) |
---|
| 944 | |
---|
| 945 | tl_file%i_perio=il_perio |
---|
| 946 | |
---|
| 947 | !2- compute domain |
---|
| 948 | tl_dom=dom_init(tl_file, & |
---|
| 949 | & id_imin, id_imax, & |
---|
| 950 | & id_jmin, id_jmax) |
---|
| 951 | |
---|
| 952 | ! close file |
---|
| 953 | CALL iom_close(tl_file) |
---|
| 954 | |
---|
| 955 | ! save result |
---|
| 956 | create__restart_get_dom_index=tl_dom |
---|
| 957 | |
---|
| 958 | END FUNCTION create__restart_get_dom_index |
---|
| 959 | !> @endcode |
---|
| 960 | !------------------------------------------------------------------- |
---|
| 961 | !> @brief |
---|
| 962 | !> This subroutine |
---|
| 963 | !> |
---|
| 964 | !> @details |
---|
| 965 | !> |
---|
| 966 | !> @author J.Paul |
---|
| 967 | !> - Nov, 2013- Initial Version |
---|
| 968 | !> |
---|
| 969 | !> @param[in] |
---|
| 970 | !> @todo |
---|
| 971 | !------------------------------------------------------------------- |
---|
| 972 | !> @code |
---|
| 973 | SUBROUTINE create_restart_mask( td_var, td_mask ) |
---|
| 974 | |
---|
| 975 | IMPLICIT NONE |
---|
| 976 | |
---|
| 977 | ! Argument |
---|
| 978 | TYPE(TVAR) , INTENT(INOUT) :: td_var |
---|
| 979 | TYPE(TVAR), DIMENSION(:), INTENT(IN ) :: td_mask |
---|
| 980 | |
---|
| 981 | ! local variable |
---|
| 982 | INTEGER(i4), DIMENSION(:,:), ALLOCATABLE :: il_mask |
---|
| 983 | |
---|
| 984 | ! loop indices |
---|
| 985 | INTEGER(i4) :: jl |
---|
| 986 | INTEGER(i4) :: jk |
---|
| 987 | !---------------------------------------------------------------- |
---|
| 988 | |
---|
| 989 | IF( ANY(td_var%t_dim(1:2)%i_len /= td_mask(1)%t_dim(1:2)%i_len) )THEN |
---|
| 990 | CALL logger_error("CREATE RESTART MASK: dimension differ between "//& |
---|
| 991 | & "variable ("//& |
---|
| 992 | & TRIM(fct_str(td_var%t_dim(1)%i_len))//","//& |
---|
| 993 | & TRIM(fct_str(td_var%t_dim(2)%i_len))//& |
---|
| 994 | & ") and level ("//& |
---|
| 995 | & TRIM(fct_str(td_mask(1)%t_dim(1)%i_len))//","//& |
---|
| 996 | & TRIM(fct_str(td_mask(1)%t_dim(2)%i_len))//")") |
---|
| 997 | ELSE |
---|
| 998 | ALLOCATE( il_mask(td_var%t_dim(1)%i_len, & |
---|
| 999 | & td_var%t_dim(2)%i_len) ) |
---|
| 1000 | |
---|
| 1001 | SELECT CASE(TRIM(td_var%c_point)) |
---|
| 1002 | CASE('T') |
---|
| 1003 | il_mask(:,:)=INT(td_mask(jp_T)%d_value(:,:,1,1)) |
---|
| 1004 | CASE('U') |
---|
| 1005 | il_mask(:,:)=INT(td_mask(jp_U)%d_value(:,:,1,1)) |
---|
| 1006 | CASE('V') |
---|
| 1007 | il_mask(:,:)=INT(td_mask(jp_V)%d_value(:,:,1,1)) |
---|
| 1008 | CASE('F') |
---|
| 1009 | il_mask(:,:)=INT(td_mask(jp_F)%d_value(:,:,1,1)) |
---|
| 1010 | END SELECT |
---|
| 1011 | |
---|
| 1012 | DO jl=1,td_var%t_dim(4)%i_len |
---|
| 1013 | DO jk=1,td_var%t_dim(3)%i_len |
---|
| 1014 | WHERE( il_mask(:,:) < jk ) td_var%d_value(:,:,jk,jl)=99 !td_var%d_fill |
---|
| 1015 | !.AND. & |
---|
| 1016 | !& td_var%d_value(:,:,jk,jl) == td_var%d_fill .OR. & |
---|
| 1017 | !& il_mask(:,:) < jk .AND. & |
---|
| 1018 | !& td_var%d_value(:,:,jk,jl) == 1 ) td_var%d_value(:,:,jk,jl)=99 !td_var%d_fill |
---|
| 1019 | ENDDO |
---|
| 1020 | ENDDO |
---|
| 1021 | |
---|
| 1022 | DEALLOCATE( il_mask ) |
---|
| 1023 | ENDIF |
---|
| 1024 | END SUBROUTINE create_restart_mask |
---|
| 1025 | !> @endcode |
---|
| 1026 | !------------------------------------------------------------------- |
---|
| 1027 | !> @brief |
---|
| 1028 | !> This subroutine |
---|
| 1029 | !> |
---|
| 1030 | !> @details |
---|
| 1031 | !> |
---|
| 1032 | !> @author J.Paul |
---|
| 1033 | !> - Nov, 2013- Initial Version |
---|
| 1034 | !> |
---|
| 1035 | !> @param[in] |
---|
| 1036 | !------------------------------------------------------------------- |
---|
| 1037 | !> @code |
---|
| 1038 | FUNCTION create_restart_extract(td_var, td_file, & |
---|
| 1039 | & td_coord) |
---|
| 1040 | IMPLICIT NONE |
---|
| 1041 | ! Argument |
---|
| 1042 | TYPE(TVAR) , INTENT(IN) :: td_var |
---|
| 1043 | TYPE(TFILE), INTENT(IN) :: td_file |
---|
| 1044 | TYPE(TFILE), INTENT(IN) :: td_coord |
---|
| 1045 | |
---|
| 1046 | ! function |
---|
| 1047 | TYPE(TVAR) :: create_restart_extract |
---|
| 1048 | |
---|
| 1049 | ! local variable |
---|
| 1050 | INTEGER(i4), DIMENSION(2,2,2) :: il_ind |
---|
| 1051 | |
---|
| 1052 | INTEGER(i4) :: il_pivot |
---|
| 1053 | INTEGER(i4) :: il_perio |
---|
| 1054 | |
---|
| 1055 | INTEGER(i4) :: il_imin |
---|
| 1056 | INTEGER(i4) :: il_jmin |
---|
| 1057 | INTEGER(i4) :: il_imax |
---|
| 1058 | INTEGER(i4) :: il_jmax |
---|
| 1059 | |
---|
| 1060 | TYPE(TFILE) :: tl_file |
---|
| 1061 | |
---|
| 1062 | TYPE(TMPP) :: tl_mpp |
---|
| 1063 | |
---|
| 1064 | TYPE(TATT) :: tl_att |
---|
| 1065 | |
---|
| 1066 | TYPE(TVAR) :: tl_var |
---|
| 1067 | |
---|
| 1068 | TYPE(TDOM) :: tl_dom |
---|
| 1069 | ! loop indices |
---|
| 1070 | !---------------------------------------------------------------- |
---|
| 1071 | |
---|
| 1072 | IF( td_file%i_id == 0 )THEN |
---|
| 1073 | CALL logger_error("CREATE RESTART EXTRACT: file "//& |
---|
| 1074 | & TRIM(td_file%c_name)//" not opened ") |
---|
| 1075 | ELSE |
---|
| 1076 | |
---|
| 1077 | !init |
---|
| 1078 | tl_file=td_file |
---|
| 1079 | |
---|
| 1080 | !1- open file |
---|
| 1081 | CALL iom_open(tl_file) |
---|
| 1082 | |
---|
| 1083 | ! get periodicity |
---|
| 1084 | il_pivot=grid_get_pivot(tl_file) |
---|
| 1085 | il_perio=grid_get_perio(tl_file,il_pivot) |
---|
| 1086 | |
---|
| 1087 | tl_file%i_perio=il_perio |
---|
| 1088 | |
---|
| 1089 | !2- compute file grid indices around coord grid |
---|
| 1090 | il_ind(:,:,:)=grid_get_coarse_index(tl_file, td_coord ) |
---|
| 1091 | |
---|
| 1092 | il_imin=il_ind(1,1,1) ; il_imax=il_ind(1,2,1) |
---|
| 1093 | il_jmin=il_ind(2,1,1) ; il_jmax=il_ind(2,2,1) |
---|
| 1094 | |
---|
| 1095 | !3- check grid coincidence |
---|
| 1096 | CALL grid_check_coincidence( tl_file, td_coord, & |
---|
| 1097 | & il_imin, il_imax, & |
---|
| 1098 | & il_jmin, il_jmax, & |
---|
| 1099 | & (/1, 1, 1/) ) |
---|
| 1100 | |
---|
| 1101 | !4- compute domain |
---|
| 1102 | tl_dom=dom_init(tl_file, & |
---|
| 1103 | & il_imin, il_imax, & |
---|
| 1104 | & il_jmin, il_jmax) |
---|
| 1105 | |
---|
| 1106 | ! close file |
---|
| 1107 | CALL iom_close(tl_file) |
---|
| 1108 | |
---|
| 1109 | !5- read bathymetry on domain (ugly way to do it, have to work on it) |
---|
| 1110 | !5-1 init mpp structure |
---|
| 1111 | tl_mpp=mpp_init(tl_file) |
---|
| 1112 | |
---|
| 1113 | CALL file_clean(tl_file) |
---|
| 1114 | |
---|
| 1115 | !5-2 get processor to be used |
---|
| 1116 | CALL mpp_get_use( tl_mpp, tl_dom ) |
---|
| 1117 | |
---|
| 1118 | !5-3 open mpp files |
---|
| 1119 | CALL iom_mpp_open(tl_mpp) |
---|
| 1120 | |
---|
| 1121 | !5-4 read variable on domain |
---|
| 1122 | tl_var=iom_mpp_read_var(tl_mpp,TRIM(td_var%c_name),td_dom=tl_dom) |
---|
| 1123 | |
---|
| 1124 | !5-5 close mpp file |
---|
| 1125 | CALL iom_mpp_close(tl_mpp) |
---|
| 1126 | |
---|
| 1127 | !6- add ghost cell |
---|
| 1128 | CALL grid_add_ghost(tl_var,tl_dom%i_ighost,tl_dom%i_jghost) |
---|
| 1129 | |
---|
| 1130 | !7- check result |
---|
| 1131 | IF( ANY( tl_var%t_dim(:)%l_use .AND. & |
---|
| 1132 | & tl_var%t_dim(:)%i_len /= td_coord%t_dim(:)%i_len) )THEN |
---|
| 1133 | CALL logger_debug("CREATE BATHY EXTRACT: "//& |
---|
| 1134 | & "dimensoin of variable "//TRIM(td_var%c_name)//" "//& |
---|
| 1135 | & TRIM(fct_str(tl_var%t_dim(1)%i_len))//","//& |
---|
| 1136 | & TRIM(fct_str(tl_var%t_dim(2)%i_len))//","//& |
---|
| 1137 | & TRIM(fct_str(tl_var%t_dim(3)%i_len))//","//& |
---|
| 1138 | & TRIM(fct_str(tl_var%t_dim(4)%i_len)) ) |
---|
| 1139 | CALL logger_debug("CREATE BATHY EXTRACT: "//& |
---|
| 1140 | & "dimensoin of coordinate file "//& |
---|
| 1141 | & TRIM(fct_str(td_coord%t_dim(1)%i_len))//","//& |
---|
| 1142 | & TRIM(fct_str(td_coord%t_dim(2)%i_len))//","//& |
---|
| 1143 | & TRIM(fct_str(td_coord%t_dim(3)%i_len))//","//& |
---|
| 1144 | & TRIM(fct_str(td_coord%t_dim(4)%i_len)) ) |
---|
| 1145 | CALL logger_fatal("CREATE BATHY EXTRACT: "//& |
---|
| 1146 | & "dimensoin of extracted "//& |
---|
| 1147 | & "variable and coordinate file dimension differ") |
---|
| 1148 | ENDIF |
---|
| 1149 | |
---|
| 1150 | !8- add attribute to variable |
---|
| 1151 | tl_att=att_init('src_file',TRIM(fct_basename(tl_mpp%c_name))) |
---|
| 1152 | CALL var_move_att(tl_var, tl_att) |
---|
| 1153 | |
---|
| 1154 | !9- save result |
---|
| 1155 | create_restart_extract=tl_var |
---|
| 1156 | |
---|
| 1157 | ! clean structure |
---|
| 1158 | CALL var_clean(tl_var) |
---|
| 1159 | CALL mpp_clean(tl_mpp) |
---|
| 1160 | ENDIF |
---|
| 1161 | |
---|
| 1162 | END FUNCTION create_restart_extract |
---|
| 1163 | !> @endcode |
---|
| 1164 | !------------------------------------------------------------------- |
---|
| 1165 | !> @brief |
---|
| 1166 | !> This subroutine |
---|
| 1167 | !> |
---|
| 1168 | !> @details |
---|
| 1169 | !> |
---|
| 1170 | !> @author J.Paul |
---|
| 1171 | !> - Nov, 2013- Initial Version |
---|
| 1172 | !> |
---|
| 1173 | !> @param[in] |
---|
| 1174 | !> @todo |
---|
| 1175 | !------------------------------------------------------------------- |
---|
| 1176 | !> @code |
---|
| 1177 | SUBROUTINE create_restart_interp( td_var, td_level,& |
---|
| 1178 | & id_rho, & |
---|
| 1179 | & id_offset, & |
---|
| 1180 | & id_iext, id_jext) |
---|
| 1181 | |
---|
| 1182 | IMPLICIT NONE |
---|
| 1183 | |
---|
| 1184 | ! Argument |
---|
| 1185 | TYPE(TVAR) , INTENT(INOUT) :: td_var |
---|
| 1186 | TYPE(TVAR) , DIMENSION(:) , INTENT(INOUT) :: td_level |
---|
| 1187 | INTEGER(i4), DIMENSION(:) , INTENT(IN ) :: id_rho |
---|
| 1188 | INTEGER(i4), DIMENSION(:,:), INTENT(IN ) :: id_offset |
---|
| 1189 | INTEGER(i4), INTENT(IN ), OPTIONAL :: id_iext |
---|
| 1190 | INTEGER(i4), INTENT(IN ), OPTIONAL :: id_jext |
---|
| 1191 | |
---|
| 1192 | ! local variable |
---|
| 1193 | TYPE(TVAR) :: tl_var |
---|
| 1194 | |
---|
| 1195 | INTEGER(i4) :: il_iext |
---|
| 1196 | INTEGER(i4) :: il_jext |
---|
| 1197 | |
---|
| 1198 | ! loop indices |
---|
| 1199 | !---------------------------------------------------------------- |
---|
| 1200 | |
---|
| 1201 | ! copy variable |
---|
| 1202 | tl_var=td_var |
---|
| 1203 | |
---|
| 1204 | il_iext=3 |
---|
| 1205 | IF( PRESENT(id_iext) ) il_iext=id_iext |
---|
| 1206 | |
---|
| 1207 | il_jext=3 |
---|
| 1208 | IF( PRESENT(id_jext) ) il_jext=id_jext |
---|
| 1209 | |
---|
| 1210 | IF( il_iext < 2 .AND. td_var%c_interp(1) == 'cubic' )THEN |
---|
| 1211 | CALL logger_warn("CREATE RESTART INTERP: at least extrapolation "//& |
---|
| 1212 | & "on two points are required with cubic interpolation ") |
---|
| 1213 | il_iext=2 |
---|
| 1214 | ENDIF |
---|
| 1215 | |
---|
| 1216 | IF( il_jext < 2 .AND. td_var%c_interp(1) == 'cubic' )THEN |
---|
| 1217 | CALL logger_warn("CREATE RESTART INTERP: at least extrapolation "//& |
---|
| 1218 | & "on two points are required with cubic interpolation ") |
---|
| 1219 | il_jext=2 |
---|
| 1220 | ENDIF |
---|
| 1221 | |
---|
| 1222 | il_iext=0 |
---|
| 1223 | il_jext=0 |
---|
| 1224 | |
---|
| 1225 | ! work on variable |
---|
| 1226 | !1 add extraband |
---|
| 1227 | CALL extrap_add_extrabands(tl_var, il_iext, il_jext) |
---|
| 1228 | |
---|
| 1229 | !2 extrapolate variable |
---|
| 1230 | CALL extrap_fill_value( tl_var, td_level(:), & |
---|
| 1231 | & id_offset(:,:), & |
---|
| 1232 | & id_rho(:), & |
---|
| 1233 | & id_iext=il_iext, id_jext=il_jext ) |
---|
| 1234 | |
---|
| 1235 | !3 interpolate variable |
---|
| 1236 | CALL interp_fill_value( tl_var, id_rho(:), & |
---|
| 1237 | & id_offset=id_offset(:,:) ) |
---|
| 1238 | |
---|
| 1239 | !4 remove extraband |
---|
| 1240 | CALL extrap_del_extrabands(tl_var, il_iext*id_rho(jp_I), il_jext*id_rho(jp_J)) |
---|
| 1241 | |
---|
| 1242 | !5- save result |
---|
| 1243 | td_var=tl_var |
---|
| 1244 | |
---|
| 1245 | ! clean variable structure |
---|
| 1246 | CALL var_clean(tl_var) |
---|
| 1247 | |
---|
| 1248 | END SUBROUTINE create_restart_interp |
---|
| 1249 | !> @endcode |
---|
| 1250 | END PROGRAM create_restart |
---|