1 | !---------------------------------------------------------------------- |
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2 | ! NEMO system team, System and Interface for oceanic RElocable Nesting |
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3 | !---------------------------------------------------------------------- |
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4 | ! |
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5 | ! |
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6 | ! PROGRAM: create_restart |
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7 | ! |
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8 | ! DESCRIPTION: |
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9 | !> @brief |
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10 | !> This program create restart file. |
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11 | !> |
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12 | !> @details |
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13 | !> Variables are read from restart file, or standard output. |
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14 | !> Then theses variables are interpolated on fine grid. |
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15 | !> Finally table are split over new decomposition. |
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16 | !> |
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17 | !> @author |
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18 | !> J.Paul |
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19 | ! REVISION HISTORY: |
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20 | !> @date Nov, 2013 - Initial Version |
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21 | ! |
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22 | !> @note Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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23 | !> |
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24 | !> @todo |
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25 | !> - add attributes indices and refinement in output file |
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26 | !> - check fileout exist at the beginning |
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27 | !---------------------------------------------------------------------- |
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28 | !> @code |
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29 | PROGRAM create_restart |
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30 | |
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31 | ! USE netcdf ! nf90 library |
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32 | USE global ! global variable |
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33 | USE kind ! F90 kind parameter |
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34 | USE logger ! log file manager |
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35 | USE fct ! basic useful function |
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36 | USE date ! date manager |
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37 | USE att ! attribute manager |
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38 | USE dim ! dimension manager |
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39 | USE var ! variable manager |
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40 | USE file ! file manager |
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41 | USE multi ! multi file manager |
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42 | USE iom ! I/O manager |
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43 | USE dom ! domain manager |
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44 | USE grid ! grid manager |
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45 | USE vgrid ! vertical grid manager |
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46 | USE extrap ! extrapolation manager |
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47 | USE interp ! interpolation manager |
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48 | USE filter ! filter manager |
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49 | USE mpp ! MPP manager |
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50 | USE iom_mpp ! MPP I/O manager |
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51 | |
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52 | IMPLICIT NONE |
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53 | |
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54 | |
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55 | ! local variable |
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56 | CHARACTER(LEN=lc) :: cl_namelist |
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57 | CHARACTER(LEN=lc) :: cl_date |
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58 | CHARACTER(LEN=lc) :: cl_name |
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59 | CHARACTER(LEN=lc) :: cl_data |
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60 | |
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61 | INTEGER(i4) :: il_narg |
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62 | INTEGER(i4) :: il_status |
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63 | INTEGER(i4) :: il_fileid |
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64 | INTEGER(i4) :: il_attid |
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65 | INTEGER(i4) :: il_imin0 |
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66 | INTEGER(i4) :: il_imax0 |
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67 | INTEGER(i4) :: il_jmin0 |
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68 | INTEGER(i4) :: il_jmax0 |
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69 | INTEGER(i4) , DIMENSION(ip_maxdim) :: il_rho |
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70 | INTEGER(i4) , DIMENSION(2) :: il_xghost |
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71 | INTEGER(i4) , DIMENSION(2,2) :: il_offset |
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72 | INTEGER(i4) , DIMENSION(2,2,2) :: il_ind |
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73 | |
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74 | LOGICAL :: ll_exist |
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75 | |
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76 | TYPE(TFILE) :: tl_coord0 |
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77 | TYPE(TFILE) :: tl_coord1 |
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78 | TYPE(TFILE) :: tl_bathy1 |
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79 | TYPE(TFILE) :: tl_file |
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80 | |
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81 | TYPE(TDOM) :: tl_dom1 |
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82 | TYPE(TDOM) :: tl_dom0 |
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83 | |
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84 | TYPE(TATT) :: tl_att |
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85 | |
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86 | TYPE(TVAR) :: tl_depth |
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87 | TYPE(TVAR) :: tl_time |
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88 | TYPE(TVAR) :: tl_lon |
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89 | TYPE(TVAR) :: tl_lat |
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90 | TYPE(TVAR) :: tl_tmp |
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91 | TYPE(TVAR) , DIMENSION(:) , ALLOCATABLE :: tl_var |
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92 | TYPE(TVAR) , DIMENSION(:) , ALLOCATABLE :: tl_level |
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93 | |
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94 | TYPE(TDIM) , DIMENSION(ip_maxdim) :: tl_dim |
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95 | |
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96 | TYPE(TMPP) :: tl_mpp |
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97 | TYPE(TMPP) :: tl_mppout |
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98 | TYPE(TMULTI) :: tl_multi |
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99 | |
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100 | ! loop indices |
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101 | INTEGER(i4) :: ji |
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102 | INTEGER(i4) :: jj |
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103 | INTEGER(i4) :: jvar |
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104 | |
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105 | ! namelist variable |
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106 | CHARACTER(LEN=lc) :: cn_logfile = 'create_restart.log' |
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107 | CHARACTER(LEN=lc) :: cn_verbosity = 'warning' |
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108 | |
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109 | CHARACTER(LEN=lc) :: cn_varcfg = 'variable.cfg' |
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110 | |
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111 | CHARACTER(LEN=lc) :: cn_coord0 = '' |
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112 | INTEGER(i4) :: in_perio0 = -1 |
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113 | |
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114 | CHARACTER(LEN=lc) :: cn_coord1 = '' |
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115 | CHARACTER(LEN=lc) :: cn_bathy1 = '' |
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116 | INTEGER(i4) :: in_perio1 = -1 |
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117 | INTEGER(i4) :: in_extrap = 0 |
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118 | LOGICAL :: ln_fillclosed = .TRUE. |
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119 | |
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120 | CHARACTER(LEN=lc), DIMENSION(ig_maxvar) :: cn_varinfo = '' |
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121 | CHARACTER(LEN=lc), DIMENSION(ig_maxvar) :: cn_varfile = '' |
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122 | |
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123 | INTEGER(i4) :: in_imin0 = 0 |
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124 | INTEGER(i4) :: in_imax0 = 0 |
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125 | INTEGER(i4) :: in_jmin0 = 0 |
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126 | INTEGER(i4) :: in_jmax0 = 0 |
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127 | INTEGER(i4) :: in_rhoi = 0 |
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128 | INTEGER(i4) :: in_rhoj = 0 |
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129 | |
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130 | CHARACTER(LEN=lc) :: cn_fileout = 'restart' |
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131 | INTEGER(i4) :: in_nproc = 0 |
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132 | INTEGER(i4) :: in_niproc = 0 |
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133 | INTEGER(i4) :: in_njproc = 0 |
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134 | CHARACTER(LEN=lc) :: cn_type = '' |
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135 | |
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136 | !------------------------------------------------------------------- |
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137 | |
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138 | NAMELIST /namlog/ & !< logger namelist |
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139 | & cn_logfile, & !< log file |
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140 | & cn_verbosity !< log verbosity |
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141 | |
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142 | NAMELIST /namcfg/ & !< configuration namelist |
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143 | & cn_varcfg !< variable configuration file |
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144 | |
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145 | NAMELIST /namcrs/ & !< coarse grid namelist |
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146 | & cn_coord0, & !< coordinate file |
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147 | & in_perio0 !< periodicity index |
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148 | |
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149 | NAMELIST /namfin/ & !< fine grid namelist |
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150 | & cn_coord1, & !< coordinate file |
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151 | & cn_bathy1, & !< bathymetry file |
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152 | & in_perio1, & !< periodicity index |
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153 | & in_extrap, & !< |
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154 | & ln_fillclosed !< fill closed sea |
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155 | |
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156 | NAMELIST /namvar/ & !< variable namelist |
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157 | & cn_varinfo, & !< list of variable and interpolation method to be used. (ex: 'votemper:linear','vosaline:cubic' ) |
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158 | & cn_varfile !< list of variable file |
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159 | |
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160 | NAMELIST /namnst/ & !< nesting namelist |
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161 | & in_imin0, & !< i-direction lower left point indice |
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162 | & in_imax0, & !< i-direction upper right point indice |
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163 | & in_jmin0, & !< j-direction lower left point indice |
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164 | & in_jmax0, & !< j-direction upper right point indice |
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165 | & in_rhoi, & !< refinement factor in i-direction |
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166 | & in_rhoj !< refinement factor in j-direction |
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167 | |
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168 | NAMELIST /namout/ & !< output namlist |
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169 | & cn_fileout, & !< fine grid bathymetry file |
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170 | & in_nproc, & !< number of processor to be used |
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171 | & in_niproc, & !< i-direction number of processor |
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172 | & in_njproc, & !< j-direction numebr of processor |
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173 | & cn_type !< output type format (dimg, cdf) |
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174 | !------------------------------------------------------------------- |
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175 | |
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176 | !1- namelist |
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177 | !1-1 get namelist |
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178 | il_narg=COMMAND_ARGUMENT_COUNT() !f03 intrinsec |
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179 | IF( il_narg/=1 )THEN |
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180 | PRINT *,"ERROR in create_restart: need a namelist" |
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181 | STOP |
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182 | ELSE |
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183 | CALL GET_COMMAND_ARGUMENT(1,cl_namelist) !f03 intrinsec |
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184 | ENDIF |
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185 | |
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186 | !1-2 read namelist |
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187 | INQUIRE(FILE=TRIM(cl_namelist), EXIST=ll_exist) |
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188 | IF( ll_exist )THEN |
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189 | |
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190 | il_fileid=fct_getunit() |
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191 | |
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192 | OPEN( il_fileid, FILE=TRIM(cl_namelist), & |
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193 | & FORM='FORMATTED', & |
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194 | & ACCESS='SEQUENTIAL', & |
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195 | & STATUS='OLD', & |
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196 | & ACTION='READ', & |
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197 | & IOSTAT=il_status) |
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198 | CALL fct_err(il_status) |
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199 | IF( il_status /= 0 )THEN |
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200 | PRINT *,"ERROR in create_restart: error opening "//TRIM(cl_namelist) |
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201 | STOP |
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202 | ENDIF |
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203 | |
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204 | READ( il_fileid, NML = namlog ) |
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205 | !1-2-1 define log file |
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206 | CALL logger_open(TRIM(cn_logfile),TRIM(cn_verbosity)) |
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207 | CALL logger_header() |
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208 | |
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209 | READ( il_fileid, NML = namcfg ) |
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210 | !1-2-2 get variable extra information |
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211 | CALL var_def_extra(TRIM(cn_varcfg)) |
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212 | |
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213 | READ( il_fileid, NML = namcrs ) |
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214 | READ( il_fileid, NML = namfin ) |
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215 | READ( il_fileid, NML = namvar ) |
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216 | !1-2-3 add user change in extra information |
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217 | CALL var_chg_extra(cn_varinfo) |
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218 | !1-2-4 match variable with file |
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219 | tl_multi=multi_init(cn_varfile) |
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220 | |
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221 | READ( il_fileid, NML = namnst ) |
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222 | READ( il_fileid, NML = namout ) |
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223 | |
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224 | CLOSE( il_fileid, IOSTAT=il_status ) |
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225 | CALL fct_err(il_status) |
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226 | IF( il_status /= 0 )THEN |
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227 | CALL logger_error("CREATE RESTART: closing "//TRIM(cl_namelist)) |
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228 | ENDIF |
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229 | |
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230 | ELSE |
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231 | |
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232 | PRINT *,"ERROR in create_restart: can't find "//TRIM(cl_namelist) |
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233 | |
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234 | ENDIF |
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235 | |
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236 | !2- open files |
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237 | IF( cn_coord0 /= '' )THEN |
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238 | tl_coord0=file_init(TRIM(cn_coord0),id_perio=in_perio0) |
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239 | CALL iom_open(tl_coord0) |
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240 | ELSE |
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241 | CALL logger_fatal("CREATE RESTART: no coarse grid coordinate found. "//& |
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242 | & "check namelist") |
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243 | ENDIF |
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244 | |
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245 | IF( TRIM(cn_coord1) /= '' )THEN |
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246 | tl_coord1=file_init(TRIM(cn_coord1),id_perio=in_perio1) |
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247 | CALL iom_open(tl_coord1) |
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248 | ELSE |
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249 | CALL logger_fatal("CREATE RESTART: no fine grid coordinate found. "//& |
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250 | & "check namelist") |
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251 | ENDIF |
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252 | |
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253 | IF( TRIM(cn_bathy1) /= '' )THEN |
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254 | tl_bathy1=file_init(TRIM(cn_bathy1),id_perio=in_perio1) |
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255 | CALL iom_open(tl_bathy1) |
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256 | ELSE |
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257 | CALL logger_fatal("CREATE RESTART: no fine grid bathymetry found. "//& |
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258 | & "check namelist") |
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259 | ENDIF |
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260 | |
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261 | !3- check |
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262 | !3-2-1 check refinement factor |
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263 | il_rho(:)=1 |
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264 | IF( in_rhoi < 1 .OR. in_rhoj < 1 )THEN |
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265 | CALL logger_error("CREATE RESTART: invalid refinement factor."//& |
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266 | & " check namelist "//TRIM(cl_namelist)) |
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267 | ELSE |
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268 | il_rho(jp_I)=in_rhoi |
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269 | il_rho(jp_J)=in_rhoj |
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270 | ENDIF |
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271 | |
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272 | IF( cn_coord0 /= '' )THEN !.OR. cn_bathy0 /= '' )THEN |
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273 | |
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274 | !3-1 check namelist |
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275 | IF( in_imin0 < 1 .OR. in_imax0 < 1 .OR. in_jmin0 < 1 .OR. in_jmax0 < 1)THEN |
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276 | ! compute coarse grid indices around fine grid |
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277 | IF( cn_coord0 /= '' )THEN |
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278 | il_ind(:,:,:)=grid_get_coarse_index(tl_coord0, tl_coord1 ) |
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279 | ENDIF |
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280 | |
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281 | il_imin0=il_ind(1,1,1) ; il_imax0=il_ind(1,2,1) |
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282 | il_jmin0=il_ind(2,1,1) ; il_jmax0=il_ind(2,2,1) |
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283 | |
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284 | il_offset(:,:)=il_ind(:,:,2) |
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285 | ELSE |
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286 | il_imin0=in_imin0 ; il_imax0=in_imax0 |
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287 | il_jmin0=in_jmin0 ; il_jmax0=in_jmax0 |
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288 | |
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289 | il_offset(1,:)=FLOOR(REAL(il_rho(jp_I)-1,dp)*0.5) |
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290 | il_offset(2,:)=FLOOR(REAL(il_rho(jp_J)-1,dp)*0.5) |
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291 | ENDIF |
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292 | |
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293 | !3-2 check domain validity |
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294 | IF( cn_coord0 /= '' )THEN |
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295 | CALL grid_check_dom(tl_coord0, il_imin0, il_imax0, il_jmin0, il_jmax0) |
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296 | ENDIF |
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297 | |
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298 | !3-3 check coordinate file |
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299 | IF( cn_coord0 /= '' )THEN |
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300 | CALL grid_check_coincidence( tl_coord0, tl_coord1, & |
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301 | & il_imin0, il_imax0, & |
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302 | & il_jmin0, il_jmax0, & |
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303 | & il_rho(:) ) |
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304 | ENDIF |
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305 | |
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306 | ENDIF |
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307 | |
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308 | ! compute level |
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309 | ALLOCATE(tl_level(ig_npoint)) |
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310 | tl_level(:)=vgrid_get_level(tl_bathy1, cl_namelist ) |
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311 | |
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312 | ! remove ghost cell |
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313 | il_xghost(:)=grid_get_ghost(tl_bathy1) |
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314 | |
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315 | DO ji=1,ig_npoint |
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316 | CALL grid_del_ghost(tl_level(ji), il_xghost(1), il_xghost(2)) |
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317 | ENDDO |
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318 | |
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319 | ! close |
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320 | CALL iom_close(tl_bathy1) |
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321 | |
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322 | !4- work on variables |
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323 | IF( .NOT. ASSOCIATED(tl_multi%t_file) )THEN |
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324 | CALL logger_error("CREATE RESTART: no file to work on. "//& |
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325 | & "check cn_varfile in namelist.") |
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326 | ELSE |
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327 | ALLOCATE( tl_var( tl_multi%i_nvar ) ) |
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328 | jvar=0 |
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329 | ! for each file |
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330 | DO ji=1,tl_multi%i_nfile |
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331 | WRITE(cl_data,'(a,i2.2)') 'data_',jvar+1 |
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332 | |
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333 | IF( .NOT. ASSOCIATED(tl_multi%t_file(ji)%t_var) )THEN |
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334 | |
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335 | CALL logger_error("CREATE RESTART: no variable to work on for "//& |
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336 | & "file "//TRIM(tl_multi%t_file(ji)%c_name)//& |
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337 | & ". check cn_varfile in namelist.") |
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338 | |
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339 | ELSEIF( TRIM(tl_multi%t_file(ji)%c_name) == TRIM(cl_data) )THEN |
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340 | !4-1 use input matrix to fill variable |
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341 | |
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342 | ! for each variable initialise from matrix |
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343 | DO jj=1,tl_multi%t_file(ji)%i_nvar |
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344 | jvar=jvar+1 |
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345 | tl_tmp=tl_multi%t_file(ji)%t_var(jj) |
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346 | !4-1-1 fill value with matrix data |
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347 | ! pb voir comment gerer nb de dimension |
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348 | tl_var(jvar)=create_restart_matrix(tl_tmp, tl_coord1) |
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349 | |
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350 | !4-1-2 use mask |
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351 | CALL create_restart_mask(tl_var(jvar), tl_level(:)) |
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352 | ENDDO |
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353 | |
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354 | ELSE |
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355 | !4-2 use file to fill variable |
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356 | |
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357 | ! open file |
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358 | tl_file=file_init(TRIM(tl_multi%t_file(ji)%c_name)) |
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359 | CALL iom_open(tl_file) |
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360 | |
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361 | ! get or check depth value |
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362 | IF( tl_file%i_depthid /= 0 )THEN |
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363 | IF( ASSOCIATED(tl_depth%d_value) )THEN |
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364 | IF( ANY( tl_depth%d_value(:,:,:,:) /= & |
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365 | & tl_tmp%d_value(:,:,:,:) ) )THEN |
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366 | CALL logger_fatal("CREATE RESTART: depth value from "//& |
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367 | & TRIM(tl_multi%t_file(ji)%c_name)//" not conform "//& |
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368 | & " to those from former file(s).") |
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369 | ENDIF |
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370 | ELSE |
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371 | tl_depth=iom_read_var(tl_file,tl_file%i_depthid) |
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372 | ENDIF |
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373 | ENDIF |
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374 | |
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375 | ! get or check time value |
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376 | IF( tl_file%i_timeid /= 0 )THEN |
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377 | IF( ASSOCIATED(tl_time%d_value) )THEN |
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378 | IF( ANY( tl_time%d_value(:,:,:,:) /= & |
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379 | & tl_tmp%d_value(:,:,:,:) ) )THEN |
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380 | CALL logger_fatal("CREATE RESTART: time value from "//& |
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381 | & TRIM(tl_multi%t_file(ji)%c_name)//" not conform "//& |
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382 | & " to those from former file(s).") |
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383 | ENDIF |
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384 | ELSE |
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385 | tl_time=iom_read_var(tl_file,tl_file%i_timeid) |
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386 | ENDIF |
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387 | ENDIF |
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388 | |
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389 | IF( ANY( tl_file%t_dim(1:2)%i_len /= & |
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390 | & tl_coord0%t_dim(1:2)%i_len) )THEN |
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391 | !4-2-1 extract value from fine grid |
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392 | |
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393 | !4-2-1-1 compute domain on fine grid |
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394 | tl_dom1=create__restart_get_dom_coord(tl_file, tl_coord1) |
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395 | |
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396 | ! open mpp file on domain |
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397 | !4-2-1-2 init mpp structure |
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398 | tl_mpp=mpp_init(tl_file) |
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399 | |
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400 | !4-2-1-3 get processor to be used |
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401 | CALL mpp_get_use( tl_mpp, tl_dom1 ) |
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402 | !4-2-1-4 open mpp files |
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403 | CALL iom_mpp_open(tl_mpp) |
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404 | |
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405 | ! for each variable of this file |
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406 | DO jj=1,tl_multi%t_file(ji)%i_nvar |
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407 | jvar=jvar+1 |
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408 | cl_name=tl_multi%t_file(ji)%t_var(jj)%c_name |
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409 | !4-2-1-5 read variable over domain |
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410 | tl_var(jvar)=iom_mpp_read_var( tl_mpp, TRIM(cl_name), & |
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411 | & td_dom=tl_dom1 ) |
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412 | |
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413 | !4-2-1-7 add attribute to variable |
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414 | tl_att=att_init('src_file',TRIM(fct_basename(tl_mpp%c_name))) |
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415 | CALL var_move_att(tl_var(jvar), tl_att) |
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416 | |
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417 | ! clean structure |
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418 | CALL att_clean(tl_att) |
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419 | |
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420 | !4-2-1-8 use mask |
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421 | CALL create_restart_mask(tl_var(jvar), tl_level(:)) |
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422 | |
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423 | !4-2-1-9 add ghost cell |
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424 | CALL grid_add_ghost( tl_var(jvar), & |
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425 | & tl_dom1%i_ighost,tl_dom1%i_jghost ) |
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426 | |
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427 | ENDDO |
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428 | |
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429 | !4-2-1-2 close mpp file |
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430 | CALL iom_mpp_close(tl_mpp) |
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431 | ! clean structure |
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432 | CALL mpp_clean(tl_mpp) |
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433 | CALL dom_clean(tl_dom1) |
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434 | |
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435 | ELSE |
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436 | !4-2-2 get value from coarse grid |
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437 | |
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438 | !4-2-2-1 compute domain on coarse grid |
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439 | tl_dom0=create__restart_get_dom_index(tl_file, il_imin0, il_jmin0, & |
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440 | & il_imax0, il_jmax0) |
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441 | |
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442 | !4-2-2-2 add extra band (if possible) to compute interpolation |
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443 | CALL dom_add_extra(tl_dom0) |
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444 | |
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445 | ! open mpp file on domain |
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446 | !4-2-2-3 init mpp structure |
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447 | tl_mpp=mpp_init(tl_file) |
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448 | |
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449 | !4-2-2-4 get processor to be used |
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450 | CALL mpp_get_use( tl_mpp, tl_dom0 ) |
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451 | |
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452 | !4-2-2-5 open mpp files |
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453 | CALL iom_mpp_open(tl_mpp) |
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454 | |
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455 | ! for each variable of this file |
---|
456 | DO jj=1,tl_multi%t_file(ji)%i_nvar |
---|
457 | |
---|
458 | jvar=jvar+1 |
---|
459 | cl_name=tl_multi%t_file(ji)%t_var(jj)%c_name |
---|
460 | print *,'work on ',trim(cl_name) |
---|
461 | !4-2-2-6 read variable over domain |
---|
462 | tl_var(jvar)=iom_mpp_read_var( tl_mpp, TRIM(cl_name), & |
---|
463 | & td_dom=tl_dom0 ) |
---|
464 | |
---|
465 | !4-2-2-7 interpolate variable |
---|
466 | CALL create_restart_interp(tl_var(jvar), tl_level(:), & |
---|
467 | & il_rho(:), & |
---|
468 | & id_offset=il_offset(:,:)) |
---|
469 | |
---|
470 | !tl_att=att_init('add_offset',0.) |
---|
471 | !CALL var_move_att(tl_var(jvar), tl_att) |
---|
472 | !tl_att=att_init('scale_factor',1.) |
---|
473 | !CALL var_move_att(tl_var(jvar), tl_att) |
---|
474 | |
---|
475 | !4-2-2-8 remove extraband added to domain |
---|
476 | CALL dom_del_extra( tl_var(jvar), tl_dom0, il_rho(:) ) |
---|
477 | |
---|
478 | !4-2-2-10 add attribute to variable |
---|
479 | tl_att=att_init('src_file',TRIM(fct_basename(tl_mpp%c_name))) |
---|
480 | CALL var_move_att(tl_var(jvar), tl_att) |
---|
481 | |
---|
482 | ! clean structure |
---|
483 | CALL att_clean(tl_att) |
---|
484 | |
---|
485 | !4-2-2-11 use mask |
---|
486 | CALL create_restart_mask(tl_var(jvar), tl_level(:)) |
---|
487 | |
---|
488 | !4-2-2-12 add ghost cell |
---|
489 | CALL grid_add_ghost( tl_var(jvar), & |
---|
490 | & tl_dom0%i_ighost,tl_dom0%i_jghost ) |
---|
491 | |
---|
492 | ENDDO |
---|
493 | |
---|
494 | !4-2-2-2 close mpp file |
---|
495 | CALL iom_mpp_close(tl_mpp) |
---|
496 | ! clean structure |
---|
497 | CALL mpp_clean(tl_mpp) |
---|
498 | CALL dom_clean(tl_dom0) |
---|
499 | |
---|
500 | ENDIF |
---|
501 | |
---|
502 | ! close file |
---|
503 | CALL iom_close(tl_file) |
---|
504 | ! clean structure |
---|
505 | CALL file_clean(tl_file) |
---|
506 | ENDIF |
---|
507 | ENDDO |
---|
508 | ENDIF |
---|
509 | |
---|
510 | !5- use additional request |
---|
511 | DO jvar=1,tl_multi%i_nvar |
---|
512 | |
---|
513 | !5-1 forced min and max value |
---|
514 | CALL var_limit_value(tl_var(jvar)) |
---|
515 | |
---|
516 | !5-2 filter |
---|
517 | CALL filter_fill_value(tl_var(jvar)) |
---|
518 | |
---|
519 | !5-3 extrapolate |
---|
520 | CALL extrap_fill_value(tl_var(jvar), id_iext=in_extrap, & |
---|
521 | & id_jext=in_extrap, & |
---|
522 | & id_kext=in_extrap) |
---|
523 | |
---|
524 | ENDDO |
---|
525 | |
---|
526 | !6- create file |
---|
527 | IF( in_niproc == 0 .AND. & |
---|
528 | & in_njproc == 0 .AND. & |
---|
529 | & in_nproc == 0 )THEN |
---|
530 | in_niproc = 1 |
---|
531 | in_njproc = 1 |
---|
532 | in_nproc = 1 |
---|
533 | ENDIF |
---|
534 | tl_mppout=mpp_init( TRIM(cn_fileout), tl_var(1), & |
---|
535 | & in_niproc, in_njproc, in_nproc, & |
---|
536 | & cd_type=cn_type) |
---|
537 | |
---|
538 | !6-1 add dimension |
---|
539 | tl_dim(:)=var_max_dim(tl_var(:)) |
---|
540 | |
---|
541 | DO ji=1,ip_maxdim |
---|
542 | IF( tl_dim(ji)%l_use )THEN |
---|
543 | CALL mpp_move_dim(tl_mppout, tl_dim(ji)) |
---|
544 | SELECT CASE(TRIM(tl_dim(ji)%c_sname)) |
---|
545 | CASE('z','t') |
---|
546 | DO jj=1,tl_mppout%i_nproc |
---|
547 | CALL file_add_dim(tl_mppout%t_proc(jj), tl_dim(ji)) |
---|
548 | ENDDO |
---|
549 | END SELECT |
---|
550 | ENDIF |
---|
551 | ENDDO |
---|
552 | |
---|
553 | !6-2 add variables |
---|
554 | |
---|
555 | !IF( ALL( tl_dim(1:2)%l_use ) )THEN |
---|
556 | ! ! add longitude |
---|
557 | ! tl_lon=iom_read_var(tl_coord1,'longitude') |
---|
558 | |
---|
559 | ! CALL mpp_add_var(tl_mppout, tl_lon) |
---|
560 | ! CALL var_clean(tl_lon) |
---|
561 | |
---|
562 | ! ! add latitude |
---|
563 | ! tl_lat=iom_read_var(tl_coord1,'latitude') |
---|
564 | |
---|
565 | ! CALL mpp_add_var(tl_mppout, tl_lat) |
---|
566 | ! CALL var_clean(tl_lat) |
---|
567 | !ENDIF |
---|
568 | |
---|
569 | !IF( tl_dim(3)%l_use )THEN |
---|
570 | ! ! add depth |
---|
571 | ! CALL mpp_add_var(tl_mppout, tl_depth) |
---|
572 | ! CALL var_clean(tl_depth) |
---|
573 | !ENDIF |
---|
574 | |
---|
575 | !IF( tl_dim(4)%l_use )THEN |
---|
576 | ! ! add time |
---|
577 | ! CALL mpp_add_var(tl_mppout, tl_time) |
---|
578 | ! CALL var_clean(tl_time) |
---|
579 | !ENDIF |
---|
580 | |
---|
581 | ! add other variable |
---|
582 | DO jvar=1,tl_multi%i_nvar |
---|
583 | CALL mpp_add_var(tl_mppout, tl_var(jvar)) |
---|
584 | CALL var_clean(tl_var(jvar)) |
---|
585 | ENDDO |
---|
586 | |
---|
587 | DO ji=1,4 |
---|
588 | CALL mpp_add_var(tl_mppout,tl_level(ji)) |
---|
589 | ENDDO |
---|
590 | |
---|
591 | !6-3 add some attribute |
---|
592 | tl_att=att_init("Created_by","SIREN create_restart") |
---|
593 | CALL mpp_add_att(tl_mppout, tl_att) |
---|
594 | |
---|
595 | cl_date=date_print(date_now()) |
---|
596 | tl_att=att_init("Creation_date",TRIM(cl_date)) |
---|
597 | CALL mpp_add_att(tl_mppout, tl_att) |
---|
598 | |
---|
599 | ! add attribute periodicity |
---|
600 | il_attid=0 |
---|
601 | IF( ASSOCIATED(tl_mppout%t_proc(1)%t_att) )THEN |
---|
602 | il_attid=att_get_id(tl_mppout%t_proc(1)%t_att(:),'periodicity') |
---|
603 | ENDIF |
---|
604 | IF( tl_coord1%i_perio >= 0 .AND. il_attid == 0 )THEN |
---|
605 | tl_att=att_init('periodicity',tl_coord1%i_perio) |
---|
606 | CALL mpp_add_att(tl_mppout,tl_att) |
---|
607 | ENDIF |
---|
608 | |
---|
609 | il_attid=0 |
---|
610 | IF( ASSOCIATED(tl_mppout%t_proc(1)%t_att) )THEN |
---|
611 | il_attid=att_get_id(tl_mppout%t_proc(1)%t_att(:),'ew_overlap') |
---|
612 | ENDIF |
---|
613 | IF( tl_coord1%i_ew >= 0 .AND. il_attid == 0 )THEN |
---|
614 | tl_att=att_init('ew_overlap',tl_coord1%i_ew) |
---|
615 | CALL mpp_add_att(tl_mppout,tl_att) |
---|
616 | ENDIF |
---|
617 | |
---|
618 | !6-4 create file |
---|
619 | CALL iom_mpp_create(tl_mppout) |
---|
620 | |
---|
621 | !6-5 write file |
---|
622 | CALL iom_mpp_write_file(tl_mppout) |
---|
623 | |
---|
624 | !6-6 close file |
---|
625 | CALL iom_mpp_close(tl_mppout) |
---|
626 | IF( cn_coord0 /= '' ) CALL iom_close(tl_coord0) |
---|
627 | |
---|
628 | !7- clean |
---|
629 | DEALLOCATE(tl_var) |
---|
630 | |
---|
631 | CALL mpp_clean(tl_mppout) |
---|
632 | CALL file_clean(tl_coord1) |
---|
633 | CALL file_clean(tl_coord0) |
---|
634 | |
---|
635 | ! close log file |
---|
636 | CALL logger_footer() |
---|
637 | CALL logger_close() |
---|
638 | |
---|
639 | !> @endcode |
---|
640 | CONTAINS |
---|
641 | !------------------------------------------------------------------- |
---|
642 | !> @brief |
---|
643 | !> |
---|
644 | !> @details |
---|
645 | !> |
---|
646 | !> @author J.Paul |
---|
647 | !> - Nov, 2013- Initial Version |
---|
648 | !> |
---|
649 | !------------------------------------------------------------------- |
---|
650 | !> @code |
---|
651 | FUNCTION create_restart_level(td_level1) |
---|
652 | IMPLICIT NONE |
---|
653 | ! Argument |
---|
654 | TYPE(TFILE), INTENT(IN) :: td_level1 |
---|
655 | |
---|
656 | ! function |
---|
657 | TYPE(TVAR), DIMENSION(4) :: create_restart_level |
---|
658 | |
---|
659 | ! local variable |
---|
660 | TYPE(TFILE) :: tl_level1 |
---|
661 | TYPE(TVAR), DIMENSION(4) :: tl_var |
---|
662 | TYPE(TMPP) :: tl_mpplevel1 |
---|
663 | |
---|
664 | ! loop indices |
---|
665 | !---------------------------------------------------------------- |
---|
666 | |
---|
667 | !0- compute domain |
---|
668 | tl_dom1=dom_init(td_level1) |
---|
669 | |
---|
670 | !1 init mpp structure |
---|
671 | tl_level1=td_level1 |
---|
672 | tl_mpplevel1=mpp_init(tl_level1) |
---|
673 | |
---|
674 | CALL file_clean(tl_level1) |
---|
675 | |
---|
676 | !2 get processor to be used |
---|
677 | CALL mpp_get_use( tl_mpplevel1, tl_dom1 ) |
---|
678 | |
---|
679 | !3 open mpp files |
---|
680 | CALL iom_mpp_open(tl_mpplevel1) |
---|
681 | tl_var(jp_T)=iom_mpp_read_var(tl_mpplevel1,'tlevel',td_dom=tl_dom1) |
---|
682 | tl_var(jp_U)=iom_mpp_read_var(tl_mpplevel1,'ulevel',td_dom=tl_dom1) |
---|
683 | tl_var(jp_V)=iom_mpp_read_var(tl_mpplevel1,'vlevel',td_dom=tl_dom1) |
---|
684 | tl_var(jp_F)=iom_mpp_read_var(tl_mpplevel1,'flevel',td_dom=tl_dom1) |
---|
685 | |
---|
686 | !4 save result |
---|
687 | create_restart_level(:)=tl_var(:) |
---|
688 | |
---|
689 | !5 clean |
---|
690 | CALL iom_mpp_close(tl_mpplevel1) |
---|
691 | CALL mpp_clean(tl_mpplevel1) |
---|
692 | |
---|
693 | END FUNCTION create_restart_level |
---|
694 | !> @endcode |
---|
695 | !------------------------------------------------------------------- |
---|
696 | !> @brief |
---|
697 | !> This function create variable, filled with matrix value |
---|
698 | !> |
---|
699 | !> @details |
---|
700 | !> A variable is create with the same name that the input variable, |
---|
701 | !> and with dimension of the coordinate file. |
---|
702 | !> Then the variable table of value is split into equal subdomain. |
---|
703 | !> Each subdomain is fill with the linked value of the matrix. |
---|
704 | !> |
---|
705 | !> @author J.Paul |
---|
706 | !> - Nov, 2013- Initial Version |
---|
707 | !> |
---|
708 | !> @param[in] td_var : variable structure |
---|
709 | !> @param[in] td_coord : coordinate |
---|
710 | !> @return variable structure |
---|
711 | !------------------------------------------------------------------- |
---|
712 | !> @code |
---|
713 | FUNCTION create_restart_matrix(td_var, td_coord) |
---|
714 | IMPLICIT NONE |
---|
715 | ! Argument |
---|
716 | TYPE(TVAR) , INTENT(IN) :: td_var |
---|
717 | TYPE(TFILE), INTENT(IN) :: td_coord |
---|
718 | |
---|
719 | ! function |
---|
720 | TYPE(TVAR) :: create_restart_matrix |
---|
721 | |
---|
722 | ! local variable |
---|
723 | INTEGER(i4) :: il_ighost |
---|
724 | INTEGER(i4) :: il_jghost |
---|
725 | INTEGER(i4) , DIMENSION(2) :: il_xghost |
---|
726 | INTEGER(i4) , DIMENSION(3) :: il_dim |
---|
727 | INTEGER(i4) , DIMENSION(3) :: il_size |
---|
728 | INTEGER(i4) , DIMENSION(3) :: il_rest |
---|
729 | |
---|
730 | INTEGER(i4) , DIMENSION(:) , ALLOCATABLE :: il_ishape |
---|
731 | INTEGER(i4) , DIMENSION(:) , ALLOCATABLE :: il_jshape |
---|
732 | INTEGER(i4) , DIMENSION(:) , ALLOCATABLE :: il_kshape |
---|
733 | |
---|
734 | REAL(dp) , DIMENSION(:,:,:,:), ALLOCATABLE :: dl_value |
---|
735 | |
---|
736 | TYPE(TVAR) :: tl_lon |
---|
737 | TYPE(TVAR) :: tl_lat |
---|
738 | TYPE(TVAR) :: tl_var |
---|
739 | TYPE(TDIM) , DIMENSION(ip_maxdim) :: tl_dim |
---|
740 | |
---|
741 | ! loop indices |
---|
742 | INTEGER(i4) :: ji |
---|
743 | INTEGER(i4) :: jj |
---|
744 | INTEGER(i4) :: jk |
---|
745 | !---------------------------------------------------------------- |
---|
746 | |
---|
747 | !1- read output grid |
---|
748 | tl_lon=iom_read_var(td_coord,'longitude') |
---|
749 | tl_lat=iom_read_var(td_coord,'latitude') |
---|
750 | |
---|
751 | !2- look for ghost cell |
---|
752 | il_xghost(:)=grid_get_ghost( tl_lon, tl_lat ) |
---|
753 | |
---|
754 | il_ighost=il_xghost(1)*ig_ghost |
---|
755 | il_jghost=il_xghost(2)*ig_ghost |
---|
756 | |
---|
757 | !3- write value on grid |
---|
758 | !3-1 get matrix dimension |
---|
759 | il_dim(:)=td_var%t_dim(1:3)%i_len |
---|
760 | !3-2 output dimension |
---|
761 | tl_dim(:)=tl_lon%t_dim(:) |
---|
762 | |
---|
763 | ! remove ghost cell |
---|
764 | tl_dim(1)%i_len=tl_dim(1)%i_len - 2*il_xghost(1)*ig_ghost |
---|
765 | tl_dim(2)%i_len=tl_dim(2)%i_len - 2*il_xghost(2)*ig_ghost |
---|
766 | |
---|
767 | !3-3 split output domain in N subdomain depending of matrix dimension |
---|
768 | il_size(:) = tl_dim(1:3)%i_len / il_dim(:) |
---|
769 | il_rest(:) = MOD(tl_dim(1:3)%i_len, il_dim(:)) |
---|
770 | |
---|
771 | ALLOCATE( il_ishape(il_dim(1)+1) ) |
---|
772 | il_ishape(:)=0 |
---|
773 | DO ji=2,il_dim(1)+1 |
---|
774 | il_ishape(ji)=il_ishape(ji-1)+il_size(1) |
---|
775 | ENDDO |
---|
776 | ! add rest to last cell |
---|
777 | il_ishape(il_dim(1)+1)=il_ishape(il_dim(1)+1)+il_rest(1) |
---|
778 | |
---|
779 | |
---|
780 | ALLOCATE( il_jshape(il_dim(2)+1) ) |
---|
781 | il_jshape(:)=0 |
---|
782 | DO jj=2,il_dim(2)+1 |
---|
783 | il_jshape(jj)=il_jshape(jj-1)+il_size(2) |
---|
784 | ENDDO |
---|
785 | ! add rest to last cell |
---|
786 | il_jshape(il_dim(2)+1)=il_jshape(il_dim(2)+1)+il_rest(2) |
---|
787 | |
---|
788 | ALLOCATE( il_kshape(il_dim(3)+1) ) |
---|
789 | il_kshape(:)=0 |
---|
790 | DO jk=2,il_dim(3)+1 |
---|
791 | il_kshape(jk)=il_kshape(jk-1)+il_size(3) |
---|
792 | ENDDO |
---|
793 | ! add rest to last cell |
---|
794 | il_kshape(il_dim(3)+1)=il_kshape(il_dim(3)+1)+il_rest(3) |
---|
795 | |
---|
796 | !3-3 write ouput table of value |
---|
797 | ALLOCATE(dl_value( tl_dim(1)%i_len, & |
---|
798 | & tl_dim(2)%i_len, & |
---|
799 | & tl_dim(3)%i_len, & |
---|
800 | & tl_dim(4)%i_len) ) |
---|
801 | |
---|
802 | dl_value(:,:,:,:)=0 |
---|
803 | |
---|
804 | DO jk=2,il_dim(3)+1 |
---|
805 | DO jj=2,il_dim(2)+1 |
---|
806 | DO ji=2,il_dim(1)+1 |
---|
807 | |
---|
808 | dl_value( 1+il_ishape(ji-1):il_ishape(ji), & |
---|
809 | & 1+il_jshape(jj-1):il_jshape(jj), & |
---|
810 | & 1+il_kshape(jk-1):il_kshape(jk), & |
---|
811 | & 1 ) = td_var%d_value(ji-1,jj-1,jk-1,1) |
---|
812 | |
---|
813 | ENDDO |
---|
814 | ENDDO |
---|
815 | ENDDO |
---|
816 | |
---|
817 | !3-4 initialise variable with value |
---|
818 | tl_var=var_init(TRIM(td_var%c_name),dl_value(:,:,:,:)) |
---|
819 | |
---|
820 | DEALLOCATE(dl_value) |
---|
821 | |
---|
822 | !4- add ghost cell |
---|
823 | CALL grid_add_ghost(tl_var,il_ighost,il_jghost) |
---|
824 | |
---|
825 | !5- save result |
---|
826 | create_restart_matrix=tl_var |
---|
827 | |
---|
828 | END FUNCTION create_restart_matrix |
---|
829 | !> @endcode |
---|
830 | !------------------------------------------------------------------- |
---|
831 | !> @brief |
---|
832 | !> |
---|
833 | !> @details |
---|
834 | !> |
---|
835 | !> @author J.Paul |
---|
836 | !> - Nov, 2013- Initial Version |
---|
837 | !> |
---|
838 | !------------------------------------------------------------------- |
---|
839 | !> @code |
---|
840 | FUNCTION create__restart_get_dom_coord( td_file, td_coord, & |
---|
841 | & id_rho ) |
---|
842 | IMPLICIT NONE |
---|
843 | ! Argument |
---|
844 | TYPE(TFILE), INTENT(IN) :: td_file |
---|
845 | TYPE(TFILE), INTENT(IN) :: td_coord |
---|
846 | INTEGER(i4), DIMENSION(:), INTENT(IN), OPTIONAL :: id_rho |
---|
847 | |
---|
848 | ! function |
---|
849 | TYPE(TDOM) :: create__restart_get_dom_coord |
---|
850 | |
---|
851 | ! local variable |
---|
852 | INTEGER(i4) :: il_pivot |
---|
853 | INTEGER(i4) :: il_perio |
---|
854 | |
---|
855 | INTEGER(i4) :: il_imin |
---|
856 | INTEGER(i4) :: il_imax |
---|
857 | INTEGER(i4) :: il_jmin |
---|
858 | INTEGER(i4) :: il_jmax |
---|
859 | |
---|
860 | INTEGER(i4), DIMENSION(2,2,2) :: il_ind |
---|
861 | |
---|
862 | TYPE(TFILE) :: tl_file |
---|
863 | |
---|
864 | TYPE(TDOM) :: tl_dom |
---|
865 | ! loop indices |
---|
866 | !---------------------------------------------------------------- |
---|
867 | |
---|
868 | tl_file=td_file |
---|
869 | !1- open file |
---|
870 | CALL iom_open(tl_file) |
---|
871 | |
---|
872 | ! get periodicity |
---|
873 | il_pivot=grid_get_pivot(tl_file) |
---|
874 | il_perio=grid_get_perio(tl_file,il_pivot) |
---|
875 | |
---|
876 | tl_file%i_perio=il_perio |
---|
877 | |
---|
878 | !2- compute file grid indices around coord grid |
---|
879 | il_ind(:,:,:)=grid_get_coarse_index(tl_file, td_coord ) |
---|
880 | |
---|
881 | il_imin=il_ind(1,1,1) ; il_imax=il_ind(1,2,1) |
---|
882 | il_jmin=il_ind(2,1,1) ; il_jmax=il_ind(2,2,1) |
---|
883 | |
---|
884 | !3- check grid coincidence |
---|
885 | CALL grid_check_coincidence( tl_file, td_coord, & |
---|
886 | & il_imin, il_imax, & |
---|
887 | & il_jmin, il_jmax, & |
---|
888 | & id_rho(:) ) |
---|
889 | |
---|
890 | !4- compute domain |
---|
891 | tl_dom=dom_init(tl_file, & |
---|
892 | & il_imin, il_imax, & |
---|
893 | & il_jmin, il_jmax) |
---|
894 | |
---|
895 | ! close file |
---|
896 | CALL iom_close(tl_file) |
---|
897 | |
---|
898 | ! save result |
---|
899 | create__restart_get_dom_coord=tl_dom |
---|
900 | |
---|
901 | END FUNCTION create__restart_get_dom_coord |
---|
902 | !> @endcode |
---|
903 | !------------------------------------------------------------------- |
---|
904 | !> @brief |
---|
905 | !> |
---|
906 | !> @details |
---|
907 | !> |
---|
908 | !> @author J.Paul |
---|
909 | !> - Nov, 2013- Initial Version |
---|
910 | !> |
---|
911 | !------------------------------------------------------------------- |
---|
912 | !> @code |
---|
913 | FUNCTION create__restart_get_dom_index( td_file, id_imin, id_jmin, & |
---|
914 | & id_imax, id_jmax ) |
---|
915 | IMPLICIT NONE |
---|
916 | ! Argument |
---|
917 | TYPE(TFILE), INTENT(IN) :: td_file |
---|
918 | INTEGER(i4), INTENT(IN) :: id_imin |
---|
919 | INTEGER(i4), INTENT(IN) :: id_imax |
---|
920 | INTEGER(i4), INTENT(IN) :: id_jmin |
---|
921 | INTEGER(i4), INTENT(IN) :: id_jmax |
---|
922 | |
---|
923 | ! function |
---|
924 | TYPE(TDOM) :: create__restart_get_dom_index |
---|
925 | |
---|
926 | ! local variable |
---|
927 | INTEGER(i4) :: il_pivot |
---|
928 | INTEGER(i4) :: il_perio |
---|
929 | |
---|
930 | TYPE(TFILE) :: tl_file |
---|
931 | |
---|
932 | TYPE(TDOM) :: tl_dom |
---|
933 | ! loop indices |
---|
934 | !---------------------------------------------------------------- |
---|
935 | |
---|
936 | ! init |
---|
937 | tl_file=td_file |
---|
938 | !1- open file |
---|
939 | CALL iom_open(tl_file) |
---|
940 | |
---|
941 | ! get periodicity |
---|
942 | il_pivot=grid_get_pivot(tl_file) |
---|
943 | il_perio=grid_get_perio(tl_file,il_pivot) |
---|
944 | |
---|
945 | tl_file%i_perio=il_perio |
---|
946 | |
---|
947 | !2- compute domain |
---|
948 | tl_dom=dom_init(tl_file, & |
---|
949 | & id_imin, id_imax, & |
---|
950 | & id_jmin, id_jmax) |
---|
951 | |
---|
952 | ! close file |
---|
953 | CALL iom_close(tl_file) |
---|
954 | |
---|
955 | ! save result |
---|
956 | create__restart_get_dom_index=tl_dom |
---|
957 | |
---|
958 | END FUNCTION create__restart_get_dom_index |
---|
959 | !> @endcode |
---|
960 | !------------------------------------------------------------------- |
---|
961 | !> @brief |
---|
962 | !> This subroutine |
---|
963 | !> |
---|
964 | !> @details |
---|
965 | !> |
---|
966 | !> @author J.Paul |
---|
967 | !> - Nov, 2013- Initial Version |
---|
968 | !> |
---|
969 | !> @param[in] |
---|
970 | !> @todo |
---|
971 | !------------------------------------------------------------------- |
---|
972 | !> @code |
---|
973 | SUBROUTINE create_restart_mask( td_var, td_mask ) |
---|
974 | |
---|
975 | IMPLICIT NONE |
---|
976 | |
---|
977 | ! Argument |
---|
978 | TYPE(TVAR) , INTENT(INOUT) :: td_var |
---|
979 | TYPE(TVAR), DIMENSION(:), INTENT(IN ) :: td_mask |
---|
980 | |
---|
981 | ! local variable |
---|
982 | INTEGER(i4), DIMENSION(:,:), ALLOCATABLE :: il_mask |
---|
983 | |
---|
984 | ! loop indices |
---|
985 | INTEGER(i4) :: jl |
---|
986 | INTEGER(i4) :: jk |
---|
987 | !---------------------------------------------------------------- |
---|
988 | |
---|
989 | IF( ANY(td_var%t_dim(1:2)%i_len /= td_mask(1)%t_dim(1:2)%i_len) )THEN |
---|
990 | CALL logger_error("CREATE RESTART MASK: dimension differ between "//& |
---|
991 | & "variable ("//& |
---|
992 | & TRIM(fct_str(td_var%t_dim(1)%i_len))//","//& |
---|
993 | & TRIM(fct_str(td_var%t_dim(2)%i_len))//& |
---|
994 | & ") and level ("//& |
---|
995 | & TRIM(fct_str(td_mask(1)%t_dim(1)%i_len))//","//& |
---|
996 | & TRIM(fct_str(td_mask(1)%t_dim(2)%i_len))//")") |
---|
997 | ELSE |
---|
998 | ALLOCATE( il_mask(td_var%t_dim(1)%i_len, & |
---|
999 | & td_var%t_dim(2)%i_len) ) |
---|
1000 | |
---|
1001 | SELECT CASE(TRIM(td_var%c_point)) |
---|
1002 | CASE('T') |
---|
1003 | il_mask(:,:)=INT(td_mask(jp_T)%d_value(:,:,1,1)) |
---|
1004 | CASE('U') |
---|
1005 | il_mask(:,:)=INT(td_mask(jp_U)%d_value(:,:,1,1)) |
---|
1006 | CASE('V') |
---|
1007 | il_mask(:,:)=INT(td_mask(jp_V)%d_value(:,:,1,1)) |
---|
1008 | CASE('F') |
---|
1009 | il_mask(:,:)=INT(td_mask(jp_F)%d_value(:,:,1,1)) |
---|
1010 | END SELECT |
---|
1011 | |
---|
1012 | DO jl=1,td_var%t_dim(4)%i_len |
---|
1013 | DO jk=1,td_var%t_dim(3)%i_len |
---|
1014 | WHERE( il_mask(:,:) < jk ) td_var%d_value(:,:,jk,jl)=99 !td_var%d_fill |
---|
1015 | !.AND. & |
---|
1016 | !& td_var%d_value(:,:,jk,jl) == td_var%d_fill .OR. & |
---|
1017 | !& il_mask(:,:) < jk .AND. & |
---|
1018 | !& td_var%d_value(:,:,jk,jl) == 1 ) td_var%d_value(:,:,jk,jl)=99 !td_var%d_fill |
---|
1019 | ENDDO |
---|
1020 | ENDDO |
---|
1021 | |
---|
1022 | DEALLOCATE( il_mask ) |
---|
1023 | ENDIF |
---|
1024 | END SUBROUTINE create_restart_mask |
---|
1025 | !> @endcode |
---|
1026 | !------------------------------------------------------------------- |
---|
1027 | !> @brief |
---|
1028 | !> This subroutine |
---|
1029 | !> |
---|
1030 | !> @details |
---|
1031 | !> |
---|
1032 | !> @author J.Paul |
---|
1033 | !> - Nov, 2013- Initial Version |
---|
1034 | !> |
---|
1035 | !> @param[in] |
---|
1036 | !------------------------------------------------------------------- |
---|
1037 | !> @code |
---|
1038 | FUNCTION create_restart_extract(td_var, td_file, & |
---|
1039 | & td_coord) |
---|
1040 | IMPLICIT NONE |
---|
1041 | ! Argument |
---|
1042 | TYPE(TVAR) , INTENT(IN) :: td_var |
---|
1043 | TYPE(TFILE), INTENT(IN) :: td_file |
---|
1044 | TYPE(TFILE), INTENT(IN) :: td_coord |
---|
1045 | |
---|
1046 | ! function |
---|
1047 | TYPE(TVAR) :: create_restart_extract |
---|
1048 | |
---|
1049 | ! local variable |
---|
1050 | INTEGER(i4), DIMENSION(2,2,2) :: il_ind |
---|
1051 | |
---|
1052 | INTEGER(i4) :: il_pivot |
---|
1053 | INTEGER(i4) :: il_perio |
---|
1054 | |
---|
1055 | INTEGER(i4) :: il_imin |
---|
1056 | INTEGER(i4) :: il_jmin |
---|
1057 | INTEGER(i4) :: il_imax |
---|
1058 | INTEGER(i4) :: il_jmax |
---|
1059 | |
---|
1060 | TYPE(TFILE) :: tl_file |
---|
1061 | |
---|
1062 | TYPE(TMPP) :: tl_mpp |
---|
1063 | |
---|
1064 | TYPE(TATT) :: tl_att |
---|
1065 | |
---|
1066 | TYPE(TVAR) :: tl_var |
---|
1067 | |
---|
1068 | TYPE(TDOM) :: tl_dom |
---|
1069 | ! loop indices |
---|
1070 | !---------------------------------------------------------------- |
---|
1071 | |
---|
1072 | IF( td_file%i_id == 0 )THEN |
---|
1073 | CALL logger_error("CREATE RESTART EXTRACT: file "//& |
---|
1074 | & TRIM(td_file%c_name)//" not opened ") |
---|
1075 | ELSE |
---|
1076 | |
---|
1077 | !init |
---|
1078 | tl_file=td_file |
---|
1079 | |
---|
1080 | !1- open file |
---|
1081 | CALL iom_open(tl_file) |
---|
1082 | |
---|
1083 | ! get periodicity |
---|
1084 | il_pivot=grid_get_pivot(tl_file) |
---|
1085 | il_perio=grid_get_perio(tl_file,il_pivot) |
---|
1086 | |
---|
1087 | tl_file%i_perio=il_perio |
---|
1088 | |
---|
1089 | !2- compute file grid indices around coord grid |
---|
1090 | il_ind(:,:,:)=grid_get_coarse_index(tl_file, td_coord ) |
---|
1091 | |
---|
1092 | il_imin=il_ind(1,1,1) ; il_imax=il_ind(1,2,1) |
---|
1093 | il_jmin=il_ind(2,1,1) ; il_jmax=il_ind(2,2,1) |
---|
1094 | |
---|
1095 | !3- check grid coincidence |
---|
1096 | CALL grid_check_coincidence( tl_file, td_coord, & |
---|
1097 | & il_imin, il_imax, & |
---|
1098 | & il_jmin, il_jmax, & |
---|
1099 | & (/1, 1, 1/) ) |
---|
1100 | |
---|
1101 | !4- compute domain |
---|
1102 | tl_dom=dom_init(tl_file, & |
---|
1103 | & il_imin, il_imax, & |
---|
1104 | & il_jmin, il_jmax) |
---|
1105 | |
---|
1106 | ! close file |
---|
1107 | CALL iom_close(tl_file) |
---|
1108 | |
---|
1109 | !5- read bathymetry on domain (ugly way to do it, have to work on it) |
---|
1110 | !5-1 init mpp structure |
---|
1111 | tl_mpp=mpp_init(tl_file) |
---|
1112 | |
---|
1113 | CALL file_clean(tl_file) |
---|
1114 | |
---|
1115 | !5-2 get processor to be used |
---|
1116 | CALL mpp_get_use( tl_mpp, tl_dom ) |
---|
1117 | |
---|
1118 | !5-3 open mpp files |
---|
1119 | CALL iom_mpp_open(tl_mpp) |
---|
1120 | |
---|
1121 | !5-4 read variable on domain |
---|
1122 | tl_var=iom_mpp_read_var(tl_mpp,TRIM(td_var%c_name),td_dom=tl_dom) |
---|
1123 | |
---|
1124 | !5-5 close mpp file |
---|
1125 | CALL iom_mpp_close(tl_mpp) |
---|
1126 | |
---|
1127 | !6- add ghost cell |
---|
1128 | CALL grid_add_ghost(tl_var,tl_dom%i_ighost,tl_dom%i_jghost) |
---|
1129 | |
---|
1130 | !7- check result |
---|
1131 | IF( ANY( tl_var%t_dim(:)%l_use .AND. & |
---|
1132 | & tl_var%t_dim(:)%i_len /= td_coord%t_dim(:)%i_len) )THEN |
---|
1133 | CALL logger_debug("CREATE BATHY EXTRACT: "//& |
---|
1134 | & "dimensoin of variable "//TRIM(td_var%c_name)//" "//& |
---|
1135 | & TRIM(fct_str(tl_var%t_dim(1)%i_len))//","//& |
---|
1136 | & TRIM(fct_str(tl_var%t_dim(2)%i_len))//","//& |
---|
1137 | & TRIM(fct_str(tl_var%t_dim(3)%i_len))//","//& |
---|
1138 | & TRIM(fct_str(tl_var%t_dim(4)%i_len)) ) |
---|
1139 | CALL logger_debug("CREATE BATHY EXTRACT: "//& |
---|
1140 | & "dimensoin of coordinate file "//& |
---|
1141 | & TRIM(fct_str(td_coord%t_dim(1)%i_len))//","//& |
---|
1142 | & TRIM(fct_str(td_coord%t_dim(2)%i_len))//","//& |
---|
1143 | & TRIM(fct_str(td_coord%t_dim(3)%i_len))//","//& |
---|
1144 | & TRIM(fct_str(td_coord%t_dim(4)%i_len)) ) |
---|
1145 | CALL logger_fatal("CREATE BATHY EXTRACT: "//& |
---|
1146 | & "dimensoin of extracted "//& |
---|
1147 | & "variable and coordinate file dimension differ") |
---|
1148 | ENDIF |
---|
1149 | |
---|
1150 | !8- add attribute to variable |
---|
1151 | tl_att=att_init('src_file',TRIM(fct_basename(tl_mpp%c_name))) |
---|
1152 | CALL var_move_att(tl_var, tl_att) |
---|
1153 | |
---|
1154 | !9- save result |
---|
1155 | create_restart_extract=tl_var |
---|
1156 | |
---|
1157 | ! clean structure |
---|
1158 | CALL var_clean(tl_var) |
---|
1159 | CALL mpp_clean(tl_mpp) |
---|
1160 | ENDIF |
---|
1161 | |
---|
1162 | END FUNCTION create_restart_extract |
---|
1163 | !> @endcode |
---|
1164 | !------------------------------------------------------------------- |
---|
1165 | !> @brief |
---|
1166 | !> This subroutine |
---|
1167 | !> |
---|
1168 | !> @details |
---|
1169 | !> |
---|
1170 | !> @author J.Paul |
---|
1171 | !> - Nov, 2013- Initial Version |
---|
1172 | !> |
---|
1173 | !> @param[in] |
---|
1174 | !> @todo |
---|
1175 | !------------------------------------------------------------------- |
---|
1176 | !> @code |
---|
1177 | SUBROUTINE create_restart_interp( td_var, td_level,& |
---|
1178 | & id_rho, & |
---|
1179 | & id_offset, & |
---|
1180 | & id_iext, id_jext) |
---|
1181 | |
---|
1182 | IMPLICIT NONE |
---|
1183 | |
---|
1184 | ! Argument |
---|
1185 | TYPE(TVAR) , INTENT(INOUT) :: td_var |
---|
1186 | TYPE(TVAR) , DIMENSION(:) , INTENT(INOUT) :: td_level |
---|
1187 | INTEGER(i4), DIMENSION(:) , INTENT(IN ) :: id_rho |
---|
1188 | INTEGER(i4), DIMENSION(:,:), INTENT(IN ) :: id_offset |
---|
1189 | INTEGER(i4), INTENT(IN ), OPTIONAL :: id_iext |
---|
1190 | INTEGER(i4), INTENT(IN ), OPTIONAL :: id_jext |
---|
1191 | |
---|
1192 | ! local variable |
---|
1193 | TYPE(TVAR) :: tl_var |
---|
1194 | |
---|
1195 | INTEGER(i4) :: il_iext |
---|
1196 | INTEGER(i4) :: il_jext |
---|
1197 | |
---|
1198 | ! loop indices |
---|
1199 | !---------------------------------------------------------------- |
---|
1200 | |
---|
1201 | ! copy variable |
---|
1202 | tl_var=td_var |
---|
1203 | |
---|
1204 | il_iext=3 |
---|
1205 | IF( PRESENT(id_iext) ) il_iext=id_iext |
---|
1206 | |
---|
1207 | il_jext=3 |
---|
1208 | IF( PRESENT(id_jext) ) il_jext=id_jext |
---|
1209 | |
---|
1210 | IF( il_iext < 2 .AND. td_var%c_interp(1) == 'cubic' )THEN |
---|
1211 | CALL logger_warn("CREATE RESTART INTERP: at least extrapolation "//& |
---|
1212 | & "on two points are required with cubic interpolation ") |
---|
1213 | il_iext=2 |
---|
1214 | ENDIF |
---|
1215 | |
---|
1216 | IF( il_jext < 2 .AND. td_var%c_interp(1) == 'cubic' )THEN |
---|
1217 | CALL logger_warn("CREATE RESTART INTERP: at least extrapolation "//& |
---|
1218 | & "on two points are required with cubic interpolation ") |
---|
1219 | il_jext=2 |
---|
1220 | ENDIF |
---|
1221 | |
---|
1222 | il_iext=0 |
---|
1223 | il_jext=0 |
---|
1224 | |
---|
1225 | ! work on variable |
---|
1226 | !1 add extraband |
---|
1227 | CALL extrap_add_extrabands(tl_var, il_iext, il_jext) |
---|
1228 | |
---|
1229 | !2 extrapolate variable |
---|
1230 | CALL extrap_fill_value( tl_var, td_level(:), & |
---|
1231 | & id_offset(:,:), & |
---|
1232 | & id_rho(:), & |
---|
1233 | & id_iext=il_iext, id_jext=il_jext ) |
---|
1234 | |
---|
1235 | !3 interpolate variable |
---|
1236 | CALL interp_fill_value( tl_var, id_rho(:), & |
---|
1237 | & id_offset=id_offset(:,:) ) |
---|
1238 | |
---|
1239 | !4 remove extraband |
---|
1240 | CALL extrap_del_extrabands(tl_var, il_iext*id_rho(jp_I), il_jext*id_rho(jp_J)) |
---|
1241 | |
---|
1242 | !5- save result |
---|
1243 | td_var=tl_var |
---|
1244 | |
---|
1245 | ! clean variable structure |
---|
1246 | CALL var_clean(tl_var) |
---|
1247 | |
---|
1248 | END SUBROUTINE create_restart_interp |
---|
1249 | !> @endcode |
---|
1250 | END PROGRAM create_restart |
---|