source: branches/2015/dev_r5021_UKMO1_CICE_coupling/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/AA_job @ 5445

Last change on this file since 5445 was 5445, checked in by davestorkey, 5 years ago

Clear SVN keywords from 2015/dev_r5021_UKMO1_CICE_coupling branch.

  • Property svn:executable set to *
File size: 5.9 KB
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1#-Q- sxnec ##################
2#-Q- sxnec ## SXNEC IDRIS
3#-Q- sxnec ##################
4#-Q- sxnec #@$-r :XXX:XXX:XXX:           # job name
5#-Q- sxnec #@$-o output_XXXXXXX.1        # outputfile name
6#-Q- sxnec #@$-me                        # sends a mail at the end of execution
7#-Q- sxnec #@$-eo                        # merge standard error and output
8#-Q- sxnec #@$-jo                        # print a short performance analysis
9#-Q- sxnec #@$-lT 1:00:00                # Max total CPU time
10#-Q- sxnec #@$-lt 0:59:00                # Max CPU time per process
11#-Q- sxnec #@$-lM 2Gb                    # Max memory
12#-Q- sxnec ##@$-c 4                     # Max number of simultaneous procs used (here=4)
13#-Q- sxnec ##@$-q multi                 # Use more than 1 proc
14#-Q- aix ##################
15#-Q- aix ## IBM   IDRIS  ##
16#-Q- aix ##################
17#-Q- aix #@job_name= :XXX:XXX:XXX:         
18#-Q- aix #@output= output_XXXXXXX.1         
19#-Q- aix #@error= error_XXXXXXX.1         
20#-Q- aix #@cpu_limit= 5000
21#-Q- aix #@stack_limit= 200Mb       
22#-Q- aix #@data_limit= 1.8Gb         
23#-Q- aix #@notification= complete
24#-Q- aix #@total_tasks= 1
25#-Q- aix #@job_type= parallel
26#-Q- aix #@queue
27#-Q- sx8brodie ##################
28#-Q- sx8brodie ## SX8NEC IDRIS ##
29#-Q- sx8brodie ##################
30#-Q- sx8brodie #PBS -N :XXX:XXX:XXX:        # job name
31#-Q- sx8brodie #PBS -o output_XXXXXXX.1     # outputfile name
32#-Q- sx8brodie #PBS -j o                    # merge standard error and output
33#-Q- sx8brodie #PBS -S /usr/bin/ksh         # user shell
34#-Q- sx8brodie #PBS -l memsz_job=3.6gb      # Max memory
35#-Q- sx8brodie #PBS -l cputim_prc=1:01:00   # Max CPU time/prc
36#-Q- sx8brodie #PBS -l cputim_job=1:01:00   # Max CPU time/job
37#-Q- sx8brodie ##PBS -l cpunum_job=4
38#-Q- sx8brodie ##PBS -q multi
39#-Q- sx8mercure ##################
40#-Q- sx8mercure ## SX8NEC   CEA ##
41#-Q- sx8mercure ##################
42#-Q- sx8mercure #PBS -N :XXX:XXX:XXX:        # job name
43#-Q- sx8mercure #PBS -o output_XXXXXXX.1     # outputfile name
44#-Q- sx8mercure #PBS -j o                    # merge standard error and output
45#-Q- sx8mercure #PBS -S /usr/bin/ksh         # user shell
46#-Q- sx8mercure #PBS -l memsz_job=3.6gb      # Max memory
47#-Q- sx8mercure #PBS -l cputim_job=0:40:00   # Max CPU time
48#-Q- sx8mercure ##PBS -l cpunum_job=4
49########################################################################
50##
51##      Script to run a short experiment when installing the
52##      ORCA2_LIM configuration
53##
54##            Rachid Benshila, OPA System Team
55##
56##
57#########################################################################
58##-- print echo of commands before and after shell interpretation
59date
60set -vx
61
62#################################
63# Beginning of user modification
64#################################
65
66##-- define some directories :
67#- Input file storing
68#-Q- sxnec R_FORCING="gaya:/u/rech/eee/reee512/NEMO"
69#-Q- sx8brodie R_FORCING="gaya:/u/rech/eee/reee512/NEMO"
70#-Q- aix R_FORCING="gaya:/u/rech/eee/reee512/NEMO"
71#-Q- sx8mercure R_FORCING="/dmnfs10/cont003/p48ethe/FORCINGS/ORCA_R2/NEMO"
72#- Launching run repository
73#-Q- sxnec R_EXPER=${QSUB_WORKDIR:-${PWD}}
74#-Q- sx8brodie R_EXPER=${PBS_O_WORKDIR}
75#-Q- aix R_EXPER=${QSUB_WORKDIR:-${PWD}}
76#-Q- sx8mercure R_EXPER=${PWD}
77#- modipsl repository
78R_EXEDIR=MMMMMMM     
79#- output files storing
80R_SORTIE_OCE=AAAAAAA/ORCA2_LIM
81#- execution repository
82R_TMP=$TMPDIR         
83
84##-- define processus number : to change when running in mpp
85NB_PROC=1
86
87#################################
88# End of user modification
89#################################
90
91#--  define a fonction to get the input tarfile
92#-Q- sxnec Rapatrie () { [ -f $1/$2 ] || ( rcp ${R_FORCING}/$2 $1 ; cd $1; tar xvf $2 ;) }
93#-Q- sx8brodie Rapatrie () { [ -f $1/$2 ] || ( rcp ${R_FORCING}/$2 $1 ; cd $1; tar xvf $2 ;) }
94#-Q- aix Rapatrie () { [ -f $1/$2 ] || ( rcp ${R_FORCING}/$2 $1 ; cd $1; tar xvf $2 ;) }
95#-Q- sx8mercure Rapatrie () { [ -f $1/$2 ] || ( cp ${R_FORCING}/$2 $1 ; cd $1; tar xvf $2 ;) }
96
97[ -d ${R_TMP} ] || mkdir ${R_TMP}
98cd ${R_TMP}
99
100#--  get the executable
101#-Q- sxnec rcp ${LOGNAME}@rhodes:${R_EXEDIR}/bin/opa opa.xx
102#-Q- sx8brodie rcp ${LOGNAME}@brodie:${R_EXEDIR}/bin/opa opa.xx
103#-Q- aix cp ${R_EXEDIR}/bin/opa opa.xx
104#-Q- sx8mercure cp ${R_EXEDIR}/bin/opa opa.xx
105chmod 777 opa.xx
106
107## --  Copy ancillary files
108#
109#- Namelist for ocean and ice
110cp ${R_EXPER}/namelist_ice_lim2 namelist_ice
111cp ${R_EXPER}/namelist namelist
112
113#- Namelist for ocean and ice (agrif fine grid)
114cp ${R_EXPER}/1_namelist_ice_lim2 1_namelist_ice
115cp ${R_EXPER}/1_namelist 1_namelist
116cp ${R_EXPER}/AGRIF_FixedGrids.in AGRIF_FixedGrids.in
117
118#- Files for the configuration and ocean dynamics
119Rapatrie ${R_TMP} ORCA2_LIM_nemo_v3.2.tar
120
121ls -alF
122
123#-Q- sxnec export F_PROGINF=yes
124#-Q- sxnec export F_ERRCNT=5
125#-Q- sx8brodie export F_PROGINF=yes
126#-Q- sx8brodie export F_ERRCNT=5
127#-Q- sx8mercure export F_PROGINF=yes
128#-Q- sx8mercure export F_ERRCNT=5
129
130#-Q- sxnec #- To be use for a mpp run
131#-Q- sxnec #mpirun -np ${NB_PROC} ./opa.xx
132#-Q- sx8brodie #- To be use for a mpp run
133#-Q- sx8brodie #mpirun -np ${NB_PROC} ./opa.xx
134#-Q- sx8mercure #- To be use for a mpp run
135#-Q- sx8mercure #mpirun -np ${NB_PROC} ./opa.xx
136
137./opa.xx
138
139## -- Save output files
140ls -alF
141#- to copy on a storage machine
142#-Q- sxnec DPUT=mfput
143#-Q- sx8brodie DPUT=mfput
144#-Q- aix DPUT=mfput
145#-Q- sx8mercure DPUT=cp
146#-Q- sx8mercure [ -d ${R_SORTIE_OCE} ] || mkdir -p ${R_SORTIE_OCE}
147
148#- Save ocean output files
149$DPUT *ocean.output ${R_SORTIE_OCE}/.
150$DPUT *solver.stat ${R_SORTIE_OCE}/.
151[ -f *mpp.output* ] && $DPUT *mpp.output* ${R_SORTIE_OCE}/.
152for file_netcdf in *_grid_*.nc
153do
154$DPUT ${file_netcdf} ${R_SORTIE_OCE}/${file_netcdf}
155done
156#
157#- Save ice output files
158for file_netcdf in *icemod*
159do
160$DPUT ${file_netcdf} ${R_SORTIE_OCE}/${file_netcdf}
161done
162$DPUT ice.evolu ${R_SORTIE_OCE}/ice.evolu
163#
164#- Save restart files
165for restart in *restart*
166do
167$DPUT ${restart} ${R_SORTIE_OCE}/${restart}
168done
169#
170#- Save ftrace file
171[ -f ftrace.out* ] && $DPUT ftrace.out* ${R_SORTIE_OCE}/.
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