[5268] | 1 | #!/bin/bash |
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[5286] | 2 | # |
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| 3 | # Author: Patrick Brockmann |
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| 4 | # Contact: Patrick.Brockmann@cea.fr |
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| 5 | # History: |
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| 6 | # Modification: Nicolas-thierry.Martin@locean-ipsl.upmc.fr |
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| 7 | # |
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[5268] | 8 | |
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| 9 | |
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[5276] | 10 | # Set defaults |
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[5355] | 11 | #--------------------------------------------------- |
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| 12 | NEMO_TRUS=$( pwd $( dirname $0 ) ) |
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[5444] | 13 | DEBUG=0; PUBLISH=0; STATUS='OK' |
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[5268] | 14 | |
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[5355] | 15 | # Get options for replacing some initials settings |
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| 16 | #--------------------------------------------------- |
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[5268] | 17 | while [ $# -ne 0 ]; do |
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| 18 | case $1 in |
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[5286] | 19 | -b|--branch ) NEMO_BRAN=$2 ; shift 2;; -d|--debug ) set -vx; DEBUG=1 ; shift ;; |
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| 20 | -e|--email ) MAIL=$2 ; shift 2;; -j|--job ) NPROC=$2 ; shift 2;; |
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[5355] | 21 | -h|--help ) cat trusting_help.txt; exit 1;; -m|--machine) CFG_ARCH=$2 ; shift 2;; |
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| 22 | -n|--newconf) TEST_CONF=$2 ; shift 2;; -r|--refconf) REFE_CONF=$2 ; shift 2;; |
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[5286] | 23 | -t|--time ) TIME_LIMI=$2 ; shift 2;; -p|--publish) PUBLISH=1 ; shift ;; |
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[5383] | 24 | -u|--user ) CFG_USER=$2 ; shift 2;; -v|--version) NEMO_VERS=$2 ; shift 2;; |
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[5355] | 25 | *) cat trusting_help.txt; exit 1;; |
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[5268] | 26 | esac |
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| 27 | done |
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[5276] | 28 | |
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[5355] | 29 | # Initialization (super-computer & user environment) |
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| 30 | #--------------------------------------------------- |
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| 31 | if [[ ! -z "${CFG_ARCH}" && ! -z "${CFG_USER}" ]]; then |
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[5268] | 32 | |
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[5355] | 33 | if [ ! $( find ${NEMO_TRUS}/cfg -name ${CFG_USER}.cfg ) ]; then |
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| 34 | echo 'No configuration file in '${NEMO_TRUS}'/cfg for '${CFG_USER}; exit 1 |
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| 35 | elif [ ! $( find ${NEMO_TRUS}/cfg -name ${CFG_ARCH}.cfg ) ]; then |
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| 36 | echo 'No configuration file in '${NEMO_TRUS}'/cfg for '${CFG_ARCH}; exit 1 |
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| 37 | else |
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| 38 | . ${NEMO_TRUS}/trusting.env |
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| 39 | fi |
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[5268] | 40 | |
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[5355] | 41 | else |
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| 42 | cat ${NEMO_TRUS}/trusting_help.txt; exit 1 |
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| 43 | fi |
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[5268] | 44 | |
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[5355] | 45 | . ./trusting_func.sh |
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[5268] | 46 | |
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[5424] | 47 | # |
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| 48 | #--------------------------------------------------- |
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[5355] | 49 | mkdir -p ${TEST_DIR} ${REFE_DIR} |
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| 50 | echo ${TEST_DIR} && cd ${TEST_DIR} |
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[5424] | 51 | datestr1=$( LC_ALL=C date -d"${DATE_STR}" +%Y-%m-%dT%H:%M ) |
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[5438] | 52 | printf "Date\n$datestr1\n" > mesg_01_date_${CFG_USER}_${CFG_ARCH}.txt |
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[5355] | 53 | # Only at end status will change to OK |
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[5444] | 54 | STATUS='FAILED' |
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[5355] | 55 | |
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[5444] | 56 | # SVN action on XIOS & NEMO essentials directories |
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| 57 | #--------------------------------------------------- |
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| 58 | pstep "Get NEMO SVN state with: ${SVN_OPT}" |
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| 59 | get_nemo_rev |
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| 60 | |
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[5438] | 61 | # Check softwares versions (source arch environment) |
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[5355] | 62 | #--------------------------------------------------- |
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[5438] | 63 | pstep 'Get softwares release' |
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| 64 | . ${ARCH_ENV} > /dev/null |
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[5424] | 65 | get_soft_rel |
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[5444] | 66 | cat model.log |
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[5268] | 67 | |
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[5444] | 68 | # XIOS compiling |
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[5355] | 69 | #--------------------------------------------------- |
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[5444] | 70 | pstep 'Compiling XIOS' |
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| 71 | cd ${DIR_XIOS} |
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| 72 | #./make_xios --arch $ARCH -job $NPROC >& /dev/null |
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| 73 | |
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[5355] | 74 | # NEMO config compiled from scratch |
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| 75 | #--------------------------------------------------- |
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[5438] | 76 | pstep "Compiling ${CONF_REF} configuration" |
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[5276] | 77 | cd ${NEMO_CONF} |
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[5355] | 78 | #[ -d ${TEST_CONF} ] && ./makenemo -n ${TEST_CONF} clean |
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[5424] | 79 | ./makenemo -n ${TEST_CONF} -r ${REFE_CONF} -m $ARCH -j $NPROC >& /dev/null |
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[5444] | 80 | [ ! -e ${TEST_CONF}/BLD/bin/nemo.exe ] && get_out $STEP $STATUS |
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[5268] | 81 | |
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[5355] | 82 | # Get namelists, xml & forced files for running |
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| 83 | #--------------------------------------------------- |
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[5438] | 84 | pstep 'Preparing job' |
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[5444] | 85 | cd ${TEST_DIR} |
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[5355] | 86 | find ${NEMO_CONF}/${TEST_CONF}/EXP00 -regex '.*\(cfg\|opa\|ref\|xml\)' -exec cp {} . \; |
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[5268] | 87 | |
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[5402] | 88 | if [ ! -z "${FORC_TAR}" ]; then |
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| 89 | cmd_iol="tar -tvf ${NEMO_FORC}/${FORC_TAR}"; cmd_iof="tar -vxf ${NEMO_FORC}/${FORC_TAR}" |
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[5286] | 90 | else |
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[5402] | 91 | cmd_iol="ls ${NEMO_FORC}/*" ; cmd_iof="\cp ${NEMO_FORC}/* ." |
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[5286] | 92 | fi |
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[5268] | 93 | |
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[5402] | 94 | ${cmd_iol} > inputs_list.txt && ${cmd_iof} > /dev/null |
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[5444] | 95 | [ $? -ne 0 ] && get_out $STEP $STATUS |
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[5402] | 96 | [ $( find . -name '*.gz' -print -quit ) ] && gunzip *.gz |
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[5286] | 97 | |
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[5438] | 98 | # Check input files in all cases |
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| 99 | #--------------------------------------------------- |
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| 100 | pstep 'Test input files difference' |
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| 101 | diff_inputs |
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[5444] | 102 | get_out $STEP $STATUS |
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[5355] | 103 | # Job submission & computing |
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| 104 | #--------------------------------------------------- |
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[5438] | 105 | pstep 'Running' |
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[5355] | 106 | job_num=$( ${JOB_SUBM} | awk '{print $NF}' ) |
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[5444] | 107 | [ $? -ne 0 ] && get_out $STEP $STATUS |
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[5268] | 108 | |
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[5355] | 109 | time_elapsed=0; time_increment=30 |
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[5268] | 110 | sleep ${time_increment} |
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[5402] | 111 | while [[ $( ${JOB_LIST} | grep ${job_num} ) && ${time_elapsed} -lt ${TIME_LIMI} ]]; do |
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[5286] | 112 | printf "\n####################################################" >> computation.log |
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[5402] | 113 | ${JOB_VIEW} ${job_num} >> computation.log |
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[5268] | 114 | sleep ${time_increment} |
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[5286] | 115 | let time_elapsed+=${time_increment} |
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[5268] | 116 | done |
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[5402] | 117 | sleep ${time_increment} |
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[5268] | 118 | |
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[5355] | 119 | # Eventual crash during computing |
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| 120 | #--------------------------------------------------- |
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[5438] | 121 | pstep 'Test if ASCII output files exist' |
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| 122 | if [[ ! -f ocean.output || $( grep 'E R R O R' ocean.output ) ]]; then |
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| 123 | ${JOB_DELE} ${job_num} &> /dev/null |
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[5444] | 124 | [ ! -f ocean.output ] && STEP='nemo.exe crashed at initialization' |
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| 125 | [ $( grep 'E R R O R' ocean.output ) ] && STEP='nemo.exe crashed' |
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[5438] | 126 | comments('E R R O R') |
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[5402] | 127 | ${JOB_DELE} ${job_num} >/dev/null 2>&1 |
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[5444] | 128 | STATUS='FAILED' |
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| 129 | get_out $STEP $STATUS |
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[5438] | 130 | else |
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[5444] | 131 | STATUS='OK' |
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[5286] | 132 | |
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[5438] | 133 | # Inspect output text files |
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| 134 | #--------------------------------------------------- |
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| 135 | pstep 'Test ASCII output files diff' |
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| 136 | for file in ocean.output solver.stat tracer.stat; do |
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| 137 | diff $file ${REFE_DIR}/$file |
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[5444] | 138 | [ $? -ne 0 ] && STATUS='FAILED' |
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[5438] | 139 | done |
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[5286] | 140 | |
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[5438] | 141 | # Inspect output NetCDF files |
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| 142 | #--------------------------------------------------- |
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| 143 | pstep 'Test last restart NetCDF files diff' |
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| 144 | diff_restart #2> /dev/null |
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[5444] | 145 | [ $? -ne 0 ] && STATUS='FAILED' |
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[5268] | 146 | |
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[5438] | 147 | # Get computation duration |
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[5402] | 148 | #--------------------------------------------------- |
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[5438] | 149 | pstep 'Get real CPU time' |
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| 150 | get_cpu_time |
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[5268] | 151 | |
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[5438] | 152 | comments('W A R N I N G') |
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[5268] | 153 | fi |
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| 154 | |
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[5355] | 155 | # End |
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| 156 | #--------------------------------------------------- |
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[5444] | 157 | if [ $STATUS == 'FAILED' ]; then STEP='Test outputs difference'; else STEP='Code is reliable'; fi |
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| 158 | get_out $STEP $STATUS |
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