source: branches/2015/dev_r5656_Met_Office_3_diurnalSST/DOC/TexFiles/Biblio/Biblio.bib @ 5859

This file was created with JabRef 2.2.
Encoding: UTF8

@STRING{AP = {Academic Press}}

@STRING{AREPS = {Annual Review of Earth Planetary Science}}

@STRING{ARFM = {Annual Review of Fluid Mechanics}}

@STRING{ASL = {Atmospheric Science Letters}}

@STRING{AW = {Addison-Wesley}}

@STRING{CP = {Clarendon Press}}

@STRING{CD = {Clim. Dyn.}}

@STRING{CUP = {Cambridge University Press}}

@STRING{CSR = {Cont. Shelf Res.}}

@STRING{D = {Dover Publications}}

@STRING{DAO = {Dyn. Atmos. Ocean}}

@STRING{DSR = {Deep-Sea Res.}}

@STRING{E = {Eyrolles}}

@STRING{EFM ={Environ. Fluid Mech.}}

@STRING{GRL = {Geophys. Res. Let.}}

@STRING{I = {Interscience}}

@STRING{JAOT = {J. Atmos. Ocean Tech.}}

@STRING{JAS = {J. Atmos. Sc.}}

@STRING{JC = {J. Climate}}

@STRING{JCP = {J. Comput. Phys.}}

@STRING{JFM = {J. Fluid Mech.}}

@STRING{JGR = {J. Geophys. Res}}

@STRING{JHUP = {The Johns Hopkins University Press}}

@STRING{JMR = {J. Mar. Res.}}

@STRING{JMS = {J. Mar. Sys.}}

@STRING{JMSJ = {J. Met. Soc. Japan}}

@STRING{JPO = {J. Phys. Oceanogr.}}

@STRING{JSC = {J. Supercomputing.}}

@STRING{JWS = {John Wiley and Sons}}

@STRING{M = {Macmillan}}

@STRING{MGH = {McGraw-Hill}}

@STRING{MWR = {Mon. Wea. Rev.}}

@STRING{Nature = {Nat.}}

@STRING{NH = {North-Holland}}

@STRING{Ocean = {Oceanology}}

@STRING{OD = {Ocean Dyn.}}

@STRING{OM = {Ocean Modelling}}

@STRING{OS = {Ocean Sc.}}

@STRING{OUP = {Oxford University Press}}

@STRING{PH = {Prentice-Hall}}

@STRING{PO = {Prog. Oceangr.}}

@STRING{PP = {Pergamon Press}}

@STRING{PRSL = {Proceedings of the Royal Society of London}}

@STRING{QJRMS = {Quart. J. Roy. Meteor. Soc.}}

@STRING{Recherche = {La Recherche}}

@STRING{RGSP = {Rev. Geophys. Space Phys.}}

@STRING{Science = {Science}}

@STRING{SV = {Springer-Verlag}}

@STRING{Tellus = {Tellus}}


@ARTICLE{Adcroft_Campin_OM04,
  author = {A. Adcroft and J.-M. Campin},
  title = {Re-scaled height coordinates for accurate representation of free-surface flows in ocean circulation models},
  journal = OM,
  year = {2004},
  volume = {7},
  pages = {269--284},
  doi = {10.1016/j.ocemod.2003.09.003},
  url = {http://dx.doi.org/10.1016/j.ocemod.2003.09.003}
}

@ARTICLE{Arakawa1966,
  author = {A. Arakawa},
  title = {Computational design for long term numerical integration of the equations 
    of fluid motion, two-dimensional incompressible flow, Part. I.},
  journal = JCP,
  year = {1966},
  volume = {I},
  pages = {119--149}
}

@ARTICLE{Arakawa_Hsu_MWR90,
  author = {A. Arakawa and Y.-J. G. Hsu},
  title = {Energy Conserving and Potential-Enstrophy Dissipating Schemes for the Shallow Water Equations},
  journal = MWR,
  year = {1990},
  volume = {118},  number = {10},
  pages = {1960--1969},
}

@ARTICLE{Arakawa_Lamb_MWR81,
  author = {Arakawa, Akio and Lamb, Vivian R.},
  title = {A Potential Enstrophy and Energy Conserving Scheme for the Shallow
   Water Equations},
  journal = MWR,
  year = {1981},
  volume = {109},  number = {1},
  pages = {18--36}
}

@ARTICLE{Arhan2006,
  author = {M. Arhan and A.M. Treguier and B. Bourles and S. Michel},
  title = {Diagnosing the annual cycle of the Equatorial Undercurrent in the
   Atlantic Ocean from a general circulation model},
  journal = JPO,
  year = {2006},
  volume = {36},
  pages = {1502--1522}
}

@ARTICLE{Artale_al_JGR02,
  author={V. Artale and D. Iudicone and R. Santoleri and V. Rupolo and S. Marullo
          and F. {D'O}rtenzio},
  title={{Role of surface fluxes in ocean general circulation models using satellite
          sea surface temperature: Validation of and sensitivity to the forcing
          frequency of the Mediterranean thermohaline circulation}},
  journal=JGR,
  year={2002},
  volume={107},
  pages={1978-2012},
  doi = {10.1029/2000JC000452},
}

@ARTICLE{ASSELIN_MWR72,
  author = {R. Asselin},
  title = {Frequency Filter for Time Integrations},
  journal = MWR,
  year = {1972},
  volume = {100},  number = {6},
  pages = {487--490}
}

@ARTICLE{Atmadipoera_al_DSR09,
  author = {A. Atmadipoera and R. Molcard and G. Madec and S.Wijffels and J.
   Sprintall and A. Koch-Larrouy and I. Jaya and A. Supangat},
  title = {Characteristics and Variability of the Indonesian Throughflow Water
   at the Outflow Straits},
  journal = DSR,
  year = {2009},
  volume = {56},  number = {11},
  pages = {1942--1954},
  doi = {10.1016/j.dsr.2009.06.004},
  url = {http://dx.doi.org/10.1016/j.dsr.2009.06.004}
}

@ARTICLE{Aumont_al_GBC99,
  author = {O. Aumont and P. Monfray and J. C. Orr and G. Madec and E. Maier-Reimer},
  title = {Nutrient trapping in the equatorial Pacific: The ocean circulation solution},
  journal = GBC,
  year = {1999},
  volume = {13},
  pages = {351--369}
}

@ARTICLE{Aumont_al_CD98,
  author = {O. Aumont and J.C. Orr and D. Jamous and P. Monfray and O. Marti and G. Madec},
  title = {A degradation approach to accelerate simulations to steady state
   in a 3-D tracer transport model of the global ocean},
  journal = CD,
  year = {1998},
  volume = {14},
  pages = {101--116}
}

@ARTICLE{Axell_JGR02,
  author = {L. B. Axell},
  title = {Wind-driven internal waves and Langmuir circulations in a numerical ocean model of the southern Baltic Sea},
  journal = JGR,
  year = {2002},
  volume = {107},
  doi = {10.1029/2001JC000922},
  url = {http://dx.doi.org/10.1029/2001JC000922}
}

@ARTICLE{Axell_Liungman_EFM01,
  author = {L. B. Axell and O. Liungman},
  title = {A one-equation turbulence model for geophysical applications: 
  Comparison with data and the k-$\epsilon$ model},
  journal = EFM,
  year = {2001},
  volume = {1}, pages = {71--106},
  doi = {10.1029/2001JC000922},
  url = {http://dx.doi.org/10.1029/2001JC000922}
}

@ARTICLE{Ayina_al_JC06,
  author = {L.-H. Ayina and A. Bentamy and A. Munes-Mestaz and G. Madec},
  title = {The Impact of Satellite Winds and Latent Heat Fluxes in a Numerical
   Simulation of the Tropical Pacific Ocean},
  journal = JC,
  year = {2006},
  volume = {19},
  pages = {5889--5902}
}

@ARTICLE{Barnier_al_OD06,
  author = {B. Barnier and G. Madec and T. Penduff and J.-M. Molines and A.-M.
   Treguier and J. Le Sommer and A. Beckmann and A. Biastoch and C. Boning 
   and J. Dengg and C. Derval and E. Durand and S. Gulev and
   E. Remy and C. Talandier and S. Theetten and M. Maltrud and J. McClean and B. De Cuevas},
  title = {Impact of partial steps and momentum advection schemes in a global
   ocean circulation model at eddy-permitting resolution.},
  journal = OD,
  year = {2006},
  volume = {56},
  pages = {543--567},
  doi = {10.1007/s10236-006-0082-1},
  url = {http://dx.doi.org/10.1007/s10236-006-0082-1}
}

@INCOLLECTION{Barnier1996,
  author = {B. Barnier and P. Marchesiello and A.P. de Miranda},
  title = {Modeling the ocean circulation in the South Atlantic: A strategy for dealing with open boundaries},
  booktitle = {The South Atlantic: Present and Past Circulation},
  publisher = {Springer-Verlag, Berlin},
  year = {1996},
  editor = {G.Wefer and W.H. Berger and G Siedler and D. Webb},
  pages = {289-304}
}

@ARTICLE{Barnier1998,
  author = {B. Barnier and P. Marchesiello and A. P. de Miranda and J.M. Molines
   and M. Coulibaly},
  title = {A sigma-coordinate primitive equation model for studying the circulation
   in the South Atlantic I, Model configuration with error estimates},
  journal = DSR,
  year = {1998},
  volume = {45},
  pages = {543--572}
}

@ARTICLE{Barthelet_al_CRAS98,
  author = {P. Barthelet and S. Bony and P. Braconnot and A. Braum and D. Cariolle
   and E. Cohen-Solal and J.-L. Dufresne and P. Delecluse and M. D\'{e}qu\'{e}
   and L. Fairhead and M.-A. Filiberti and M. Forichon and J.-Y. Grandpeix
   and E. Guilyardi and M.-N. Houssais and M. Imbard and H. Le Treut
   and C. Lévy and Z.X. Li and G. Madec and P. Marquet and O. Marti
   and S. Planton and L. Terray and O. Thual and S. Valcke},
  title = {Global coupled simulations of climate change due to increased atmospheric CO2 concentration},
  journal = {C. R. Acad. Sci Paris},
  year = {1998},
  volume = {326},
  pages = {677--684}
}

@ARTICLE{Beckmann2003,
  author = {A. Beckmann and H. Goosse},
  title = {A parameterization of ice shelf-ocean interaction for climate models},
  journal = OM
  year = {2003}
  volume = {5}
  pages = {157--170}
}

@ARTICLE{Beckmann1998,
  author = {A. Beckmann},
  title = {The representation of bottom boundary layer processes in numerical
   ocean circulation models.},
  journal = {Ocean modelling and parameterization, E. P. Chassignet and J. Verron
   (eds.), NATO Science Series, Kluwer Academic Publishers},
  year = {1998}
}

@ARTICLE{Beckmann_Doscher1997,
  author = {A. Beckmann and R. D\"{o}scher},
  title = {A method for improved representation of dense water spreading over
   topography in geopotential-coordinate models},
  journal = JPO,
  year = {1997},
  volume = {27},
  pages = {581--591}
}

@ARTICLE{Beckmann1993,
  author = {A. Beckmann and D. B. Haidvogel},
  title = {Numerical Simulation of Flow around a Tall Isolated Seamount. 
   Part I - Problem Formulation and Model Accuracy},
  journal = JPO,
  year = {1993},
  volume = {23},  number = {8},
  pages = {1736--1753}
}

@ARTICLE{Bernie_al_CD07,
  author = {D. Bernie and E. Guilyardi and G. Madec and J. M. Slingo and S. J. Woolnough},
  title = {Impact of resolving the diurnal cycle in an ocean--atmosphere GCM. Part 1: a diurnally forced OGCM},
  journal = CD,
  year = {2007},
  volume = {29},  number = {6},
  pages = {575--590}
}

@ARTICLE{Bernie_al_CD08,
  author = {D. Bernie and E. Guilyardi and G. Madec and J. M. Slingo and S. J. Woolnough},
  title = {Impact of resolving the diurnal cycle in an ocean--atmosphere GCM. Part 2: A diurnally coupled CGCM},
  journal = CD,
  year = {2008},
  volume = {31},  number = {7},
  pages = {909--925},
  doi = {10.1007/s00382-008-0429-z},
  url = {http://dx.doi.org/10.1007/s00382-008-0429-z}
}

@ARTICLE{Bernie_al_JC05,
  author = {D. J. Bernie and S. J. Woolnough and J. M. Slingo and E. Guilyardi},
  title = {Modelling diurnal and intraseasonal variability of the ocean mixed
   layer},
  journal = JC,
  year = {2005},
  volume = {18},  number = {8},
  pages = {1190--1200}
}

@ARTICLE{Bessiere_al_GRL08,
  author = {L. Bessi\'{e}res and G. Madec and F. Lyard},
  title = {Global Tidal Residual Mean Circulation: Does it Affect a Climate OGCM?},
  journal = GRL,
  year = {2008},
  volume = {35},
  pages = {L03609},
  doi = {10.1029/2007GL032644},
  url = {http://dx.doi.org/10.1029/2007GL032644}
}

@ARTICLE{Biastoch_al_JC08,
  author = {A. Biastoch and C. W. Böning and J. Getzlaff and J.-M. Molines and G. Madec},
  title = {Causes of interannual – decadal variability in the meridional overturning
   circulation of the mid-latitude North Atlantic Ocean},
  journal = JC,
  year = {2008},
  volume = {21},  number = {24},
  pages = {6599-6615},
  doi = {10.1175/2008JCLI2404.1},
  url = {http://dx.doi.org/10.1175/2008JCLI2404.1}
}

@ARTICLE{Bignami_al_JGR95,
  author = {F. Bignami and S. Marullo and R. Santoleri and M. E. Schiano},
  title = {Longwave radiation budget in the Mediterranean Sea}, 
  journal = JGR,
  year = {1995},
  volume = {100},  number = {C2},
  pages = {2501--2514},
  doi = {10.1029/94JC02496},
}

@ARTICLE{Blanke_al_JPO99,
  author = {B. Blanke and M. Arhan and G. Madec and S. Roche},
  title = {Warm Water Paths in the Equatorial Atlantic as Diagnosed with a General Circulation Model},
  journal = JPO,
  year = {1999},
  volume = {29},  number = {11},
  pages = {2753-2768}
}

@ARTICLE{Blanke1993,
  author = {B. Blanke and P. Delecluse},
  title = {Low frequency variability of the tropical Atlantic ocean simulated
   by a general circulation model with mixed layer physics},
  journal = JPO,
  year = {1993},
  volume = {23},
  pages = {1363--1388}
}

@ARTICLE{blanke_al_JC97,
  author = {B. Blanke and J. D. Neelin and D. Gutzler},
  title = {Estimating the effect of stochastic wind forcing on ENSO irregularity},
  journal = JC,
  year = {1997},
  volume = {10},
  pages = {1473--1486}
}

@ARTICLE{Blanke_Raynaud_JPO97,
  author = {B. Blanke and S. Raynaud},
  title = {Kinematics of the Pacific Equatorial Undercurrent: An Eulerian and
   Lagrangian Approach from GCM Results},
  journal = JPO,
  year = {1997},
  volume = {27},  number = {6},
  pages = {1038--1053}
}

@ARTICLE{Blanke_al_JPO01,
  author = {B. Blanke and S. Speich and G. Madec and K. Döös},
  title = {A global Diagnostic of interocean mass transfers},
  journal = JPO,
  year = {2001},
  volume = {31},  number = {6},
  pages = {1623--1632}
}

@ARTICLE{Blanke_al_GRL02,
  author = {B. Blanke and S. Speich and G. Madec and R. Maug\'{e}},
  title = {A global diagnostic of interior ocean ventilation},
  journal = GRL,
  year = {2002},
  volume = {29},  number = {8},
  pages = {1081--1084}
}

@ARTICLE{Blayo2005,
  author = {E. Blayo and L. Debreu},
  title = {Revisiting open boundary conditions from the point of view of characteristic
   variables},
  journal = OM,
  year = {2005},
  volume = {9},
  pages = {231--252}
}

@ARTICLE{Bloom_al_MWR96,
  author = {S. C. Bloom and L. L. Takacs and A. M. Da Silva and D. Ledvina},
  title = {Data assimilation using incremental analysis updates},
  journal = MWR,
  year = {1996},
  volume = {124},
  pages = {1256--1271}
}

@ARTICLE{Bopp_al_GBC01,
  author = {L. Bopp and P. Monfray and O. Aumont and J.-L. Dufresne and H. Le Treut 
    and G. Madec and L. Terray and J.C. Orr},
  title = {Potential impact of climate change on marine export production},
  journal = GBC,
  year = {2001},
  volume = {15},  number = {1},
  pages = {81--101}
}

@ARTICLE{Bougeault1989,
  author = {P. Bougeault and P. Lacarrere},
  title = {Parameterization of Orography-Induced Turbulence in a Mesobeta--Scale
   Model},
  journal = MWR,
  year = {1989},
  volume = {117},  number = {8},
  pages = {1872--1890},
}

@ARTICLE{Bouillon_al_OM09,
  author = {S. Bouillon and M.A. Morales Maqueda and V. Legat and T. Fichefet},
  title = {An Elastic-Viscous-Plastic Sea Ice Model formulated on Arakawa B and C Grids},
  journal = OM,
  year = {2009},
  volume = {27},
  pages = {174--184},
  doi = {10.1016/j.ocemod.2009.01.004},
  url = {http://dx.doi.org/10.1016/j.ocemod.2009.01.004}
}

@ARTICLE{Boulanger_al_GRL01,
  author = {J.-P. Boulanger and E. Durand and J.-P. Duvel and C. Menkes and P.
   Delecluse and M. Imbard and M. Lengaigne and G. Madec and S. Masson},
  title = {Role of non-linear oceanic processes in the response to westerly
   wind events: new implications for the 1997 El Niño onset},
  journal = GRL,
  year = {2001},
  volume = {28},  number = {8},
  pages = {1603--1606}
}

@ARTICLE{Brodeau_al_OM09,
  author = {L. Brodeau and B. Barnier and A.-M. Tr\'{e}guier and T. Penduff and S. Gulev},
  title = {An ERA40-based atmospheric forcing for global ocean circulation models},
  journal = OM,
  year = {2009},
  volume = {31},  number = {3-4},
  pages = {88--104}
}


@ARTICLE{de_Boyer_Montegut_al_JGR04,
  author = {C. de Boyer Mont\'{e}gut and G. Madec and A.S. Fischer and A. Lazar and D. Iudicone},
  title = {Mixed layer depth over the global ocean: An examination of profile
   data and a profile-based climatology},
  journal = JGR,
  year = {2004},
  volume = {109},
  pages = {C12003},
  doi = {10.1029/2004JC002378},
  url = {http://dx.doi.org/10.1029/2004JC002378}
}

@ARTICLE{de_Boyer_Montegut_al_JC07,
  author = {C. de Boyer Mont\'{e}gut and J. Vialard and F. Durand and G. Madec},
  title = {Simulated seasonal and interannual variability of mixed layer heat
   budget in the northern Indian Ocean},
  journal = JC,
  year = {2007},
  volume = {20},  number = {13},
  pages = {3249--3268}
}

@ARTICLE{Brown_Campana_MWR78,
  author = {J. A. Brown and K. A. Campana},
  title = {An Economical Time-Differencing System for Numerical Weather Prediction},
  journal = MWR,
  year = {1978},
  volume = {106},  number = {8},
  pages = {1125--1136},
}

@ARTICLE{Bryan1997,
  author = {K. Bryan},
  title = {A Numerical Method for the Study of the Circulation of the World Ocean},
  journal = JCP,
  year = {1997},
  volume = {135},  number = {2}
}

@ARTICLE{Bryan1984,
  author = {K. Bryan},
  title = {Accelerating the convergence to equilibrium of ocean-climate models},
  journal = JPO,
  year = {1984},
  volume = {14},
  pages = {666--673}
}

@ARTICLE{Bryden1973,
  author = {H. L. Bryden},
  title = {New polynomials for thermal expansion, adiabatic temperature gradient
    and potential temperature of sea water},
  journal = DSR,
  year = {1973},
  volume = {20},
  pages = {401--408}
}

@ARTICLE{Burchard_OM02,
  author = {Hans Burchard},
  title = {Energy-conserving discretisation of turbulent shear and buoyancy
   production},
  journal = OM,
  year = {2002},
  volume = {4},  number = {3-4},
  pages = {347--361},
  doi = {10.1016/S1463-5003(02)00009-4},
  url = {http://dx.doi.org/10.1016/S1463-5003(02)00009-4}
}

@ARTICLE{Campin2004,
  author = {J.-M. Campin and A. Adcroft and C. Hill and J. Marshall},
  title = {Conservation of properties in a free-surface model},
  journal = OM,
  year = {2004},
  volume = {6},  number = {3-4},
  pages = {221--244}
}

@ARTICLE{Campin_al_OM08,
  author = {J.-M. Campin and J. Marshall and D. Ferreira},
  title = {Sea ice-ocean coupling using a rescaled vertical coordinate z*},
  journal = OM,
  year = {2008},
  volume = {24},  number = {1-2},
  pages = {1--14},
  doi = {10.1016/j.ocemod.2008.05.005},
  url = {http://dx.doi.org/10.1016/j.ocemod.2008.05.005}
}

@ARTICLE{Campin_Goosse_Tel99,
  author = {J.-M. Campin and H. Goosse},
  title = {Parameterization of density-driven downsloping flow for a coarse-resolution ocean model in z-coordinate},
  journal = {Tellus},
  year = {1999},
  volume = {51},
  pages = {412--430}
}

@ARTICLE{Carrere_Lyard_GRL03,
  author = {L. Carr\`{e}re and F. Lyard},
  title = {Modelling the barotropic response of the global ocean to atmospheric
   wind and pressure forcing - comparisons with observations},
  journal = GRL,
  year = {2003},
  volume = {30},  number = {6},
  doi = {10.1029/2002GL016473},
  url = {http://dx.doi.org/10.1029/2002GL016473}
}

@ARTICLE{Castellari_al_JMS1998,
  author = {S> Castellari and  N. Pinardi and K. Leaman },
  title = {A model study of air-sea interactions in the Mediterranean Sea.},
  journal = JMS,
  year = {1998},
  volume = {18},
  pages = {89--114}
}

@TECHREPORT{Chanut2005,
 author = {J. Chanut},
 title = {Nesting code for NEMO},
 year = {2005},
 institution = {European Union: Marine Environment and Security for the European Area (MERSEA) Integrated Project},
note = {MERSEA-WP09-MERCA-TASK-9.1.1}
} 

@ARTICLE{Chassignet_al_JPO03,
  author = {Eric P. Chassignet and Linda T. Smith and George R. Halliwell},
  title = {North Atlantic Simulations with the Hybrid Coordinate Ocean Model
   (HYCOM): Impact of the Vertical Coordinate Choice, Reference Pressure, and Thermobaricity},
  journal = JPO,
  year = {2003},
  volume = {33},
  pages = {2504-2526}
}

@ARTICLE{Covey_al_CD00,
  author = {C. Covey and A. Abe-Ouchi and G.J. Boer and B.A. Boville and U. Cubasch
   and L. Fairhead and G.M. Flato and H. Gordon and E. Guilyardi and X. Jiang 
   and T.C. Johns and H. Le Treut and G. Madec and G.A. Meehl and R. Miller 
   and A. Noda and S. B. Power and E. Roeckner and G. Russell and E.K. Schneider 
   and R.J. Stouffer and L. Terray and J.-S. von Storch},
  title = {The seasonal cycle in coupled ocean-atmosphere general circulation models},
  journal = CD,
  year = {2000},
  volume = {16},
  pages = {775--787}
}

@ARTICLE{Canuto_2001,
  author = {V. M. Canuto and A. Howard and Y. Cheng and M. S. Dubovikov},
  title = {Ocean turbulence. PartI: One-point closure model-momentum and heat vertical diffusivities},
  journal = JPO,
  year = {2001},
  volume = {24},  number = {12},
  pages = {2546--2559}
}

@ARTICLE{Cox1987,
  author = {M. Cox},
  title = {Isopycnal diffusion in a z-coordinate ocean model},
  journal = OM,
  year = {1987},
  volume = {74},
  pages = {1--9}
}

@ARTICLE{Craig_Banner_JPO94,
  author = {P. D. Craig and M. L. Banner},
  title = {Modeling wave-enhanced turbulence in the ocean surface layer},
  journal = JPO,
  year = {1994},
  volume = {24},  number = {12},
  pages = {2546--2559}
}

@ARTICLE{Craik_Leibovich_JFM76,
  author = {A. D. D. Craik and S. Leibovich},
  title = {A rational model for Langmuir circulations},
  journal = JFM,
  year = {1976},
  volume = {73}, 
  pages = {401--426}
}

@ARTICLE{Cravatte_al_OM07,
  author = {Cravatte, S. and G. Madec and T. Izumo and C. Menkes and A. Bozec},
  title = {Progress in the 3-D circulation of the eastern equatorial Pacific
   in a climate ocean model},
  journal = OM,
  year = {2007},
  volume = {17},  number = {1},
  pages = {28--48}
}

@BOOK{Daley_Barker_Bk01,
  author = {R. Daley and E. Barker},
  title = {NAVDAS Source Book 2001},
  publisher = {NRL/PU/7530-01-441, Available from the Naval Research Laboratory, Monterey, CA., 93943-5502},
  year = {2001},
  pages = {163pp}
}

@ARTICLE{D'Alessio_al_JPO98,
  author = {S. J. D. D'Alessio and K. Abdella and N. A. McFarlane},
  title = {A new second-order turbulence closure scheme for modeling the oceanic mixed layer},
  journal = JPO,
  year = {1998},
  volume = {28},
  pages = {1624--1641}
}


@ARTICLE{Danabasoglu_al_2008,
   author = {G. Danabasoglu and R. Ferrari and J. C. McWilliams},
   title = {Sensitivity of an ocean general circulation model to a parameterization of near-surface eddy fluxes},
   volume = {21},
   year = {2008},
   doi = {10.1175/2007JCLI1508.1},
   journal = {J. Climate},
   pages = {1192--1208},
        url = {http://dx.doi.org/10.1175/2007JCLI1508.1}
}
@ARTICLE{Dandonneau_al_S04,
  author = {Y. Dandonneau and C. Menkes and T. Gorgues and G. Madec},
  title = {Reply to Peter Killworth, 2004 : '' Comment on the Oceanic Rossby
   Waves acting as a “Hay Rake” for ecosystem by-products ''},
  journal = {Science},
  year = {2004},
  volume = {304},
  pages = {390}
}

@ARTICLE{Davies_QJRMS76,
 author = {H.C. Davies},
 title = {A lateral boundary formulation for multi-level prediction models},
 year = {1976},
 journal = QJRMS,
 volume = {102},
 pages = {405--418}
}

@ARTICLE{Debreu_al_CG2008,
  author = {L. Debreu and C. Vouland and E. Blayo},
  title = {AGRIF: Adaptive Grid Refinement In Fortran},
  journal = {Computers and Geosciences},
  year = {2008},
  volume = {34},
  pages = {8--13}
}

@ARTICLE{Delecluse_Madec_Bk00,
  author = {P. Delecluse and G. Madec},
  title = {Ocean modelling and the role of the ocean in the climate system},
  journal = {In \textit{Modeling the Earth's Climate and its Variability}, Les
   Houches, Session, LXVII 1997,
   Eds. W. R. Holland, S. Joussaume and F. David, Elsevier Science},
  year = {2000},
  pages = {237--313}
}


@ARTICLE{Dobricic_al_OS07,
  author = {S. Dobricic and N. Pinardi and M. Adani and M. Tonani and 
            C. Fratianni and A. Bonazzi and V. Fernandez},
  title = {Daily oceanographic analysis by the Mediterranean basin scale 
           assimilation system},
  journal = OS,
  year = {2007},
  volume = {3},
  pages = {149-157}
}

@ARTICLE{Doney_al_GBC04,
  author = {S.C. Doney and K. Lindsay and K. Caldeira and J.−M. Campin and H.
   Drange and J.−C. Dutay and M. Follows and Y. Gao and A. Gnanadesikan
   and N. Gruber and A. Ishida and F. Joos and G. Madec and E. Maier−Reimer
   and J.C. Marshall and R.J. Matear and P. Monfray and A. Mouchet and
   R. Najjar and J.C. Orr and G.−K. Plattner and J. Sarmiento and R.
   Schlitzer and R. Slater and I.J. Totterdell and M.−F. Weirig and
   Y. Yamanaka and A. Yoo},
  title = {Evaluating global ocean carbon models: the importance of realistic
   physics},
  journal = GBC,
  year = {2004},
  volume = {18},
  pages = {GB3017},
  doi = {10.1029/2003GB002150},
  url = {http://dx.doi.org/10.1029/2003GB002150}
}

@ARTICLE{Dorscher_Beckmann_JAOT00,
  author = {R. D\"{o}scher and A. Beckmann},
  title = {Effects of a Bottom Boundary Layer Parameterization in a Coarse-Resolution
   Model of the North Atlantic Ocean},
  journal = JAOT,
  year = {2000},
  volume = {17},
  pages = {698--707}
}

@ARTICLE{Drijfhout_JPO94,
  author = {S. S. Drijfhout},
  title = {Heat transport by Mesoscale Eddies in an Ocean Circulation Model},
  journal = JPO,
  year = {1994},
  volume = {24},
  pages = {353--369}
}

@ARTICLE{Dukowicz1994,
  author = {J. K. Dukowicz and R. D. Smith},
  title = {Implicit free-surface method for the Bryan-Cox-Semtner ocean model},
  journal = JGR,
  year = {1994},
  volume = {99},
  pages = {7991--8014}
}

@ARTICLE{Durand_al_JC07,
  author = {F. Durand and D. Shankar and C. de Boyer Mont\'{e}gut and S.S.C.
   Shenoi and B. Blanke and G. Madec},
  title = {Modeling the barrier-layer formation in the South-Eastern Arabian
   Sea},
  journal = JC,
  year = {2007},
  volume = {20},  number = {10},
  pages = {2109--2120}
}

@ARTICLE{Durand_al_GRL04,
  author = {F. Durand and S. R. Shetye and J. Vialard and D. Shankar and S.S.C.
   Shenoi and C. Eth\'{e} and G. Madec},
  title = {Impact of temperature inversions on SST evolution in the South−Eastern
   Arabian Sea during the pre−summer monsoon season},
  journal = GRL,
  year = {2004},
  volume = {31},
  pages = {L01305},
  doi = {10.1029/2003GL018906},
  url = {http://dx.doi.org/10.1029/2003GL018906}
}

@INCOLLECTION{Durran2001,
  author = {D.R. Durran },
  title = {Open boundary conditions: fact and fiction},
  booktitle = {Advances in Mathematical Modelling of Atmosphere and Ocean Dynamics},
  publisher = {Kluwer Academic Publishers},
  year = {2001},
  editor = {P.F. Hodnett}
}

@ARTICLE{Dutay_al_OM02,
  author = {J.-C. Dutay and J.L. Bullister and S.C. Doney and J.C. Orr and R.
   Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows
   and Y. Gao and N. Gruber and M. W. Hecht and A. Ishida and F. Joos
   and K. Lindsay and G. Madec and E. Maier-Reimer and J.C. Mashall
   and R. J. Matear and P. Monfray and G.-K. Plattner and J. Sarmiento
   and R. Schlitzer and R. Slater and I.J. Totterdell and M.-F. Weirig
   and Y. Yamanaka and A. Tool},
  title = {Evaluation of ocean model ventilation with CFC-11: comparison of
   13 global ocean models},
  journal = OM,
  year = {2002},
  volume = {4},
  pages = {89--120}
}

@ARTICLE{Dutay_al_EFM09,
  author = {J.-C. Dutay and J. Emile-Geay and D. Iudicone and P. Jean-Baptiste
   and G. Madec and C. Carouge},
  title = {Helium Isotopic Constraints on Simulated Ocean Circulations - Implications
   for abyssal theories},
  journal = EFM,
  year = {2009},
  volume = {10},  number = {1-2},
  pages = {257--273},
  url = {http://dx.doi.org/10.1007/s10652-009-9159-y}
}

@ARTICLE{Dutay.J.C2004,
  author = {J. -C. Dutay and P. J. -Baptiste and J. -M. Campin and A. Ishida
   and E. M. -Reimer and R. J. Matear and A. Mouchet and I. J. Totterdell
   and Y. Yamanaka and K. Rodgers and G. Madec and J.C. Orr},
  title = {Evaluation of OCMIP-2 ocean models’ deep circulation with mantle helium-3},
  journal = JMS,
  year = {2004},
  pages = {1--22}
}

@ARTICLE{D'Ortenzio_al_GRL05,
  author = {F. D\'Ortenzio and D. Iudicone and C. de Boyer Mont\'{e}gut and P.
   Testor and D. Antoine and S. Marullo and R. Santoleri and G. Madec},
  title = {Seasonal variability of the mixed layer depth in the Mediterranean
   Sea : a new climatology based on analysis of individual profiles},
  journal = GRL,
  year = {2005},
  volume = {32},
  pages = {L12605},
  doi = {10.1029/2005GL022463},
  url = {http://dx.doi.org/10.1029/2005GL022463}
}

@ARTICLE{Egbert_Ray_JGR01,
  author = {G.B. Egbert and R.D. Ray},
  title = {Estimates of M2 tidal energy dissipation from TOPEX/POSEIDON altimeter
   data},
  journal = JGR,
  year = {2001},
  volume = {106},
  pages = {22475--22502}
}

@ARTICLE{Egbert_Ray_Nat00,
  author = {G.B. Egbert and R.D Ray},
  title = {Significant dissipation of tidal energy in the deep ocean inferred
   from satellite altimeter data},
  journal = {Nature},
  year = {2000},
  volume = {405},
  pages = {775--778}
}

@ARTICLE{Eiseman1980,
  author = {P. R. Eiseman and A. P. Stone},
  title = {Conservation lows of fluid dynamics -- A survey},
  journal = {SIAM Review},
  year = {1980},
  volume = {22},
  pages = {12--27}
}

@ARTICLE{Emile-Geay_Madec_OS09,
  author = {J. Emile-Geay and G. Madec},
  title = {Geothermal heating, diapycnal mixing and the abyssal circulation},
  journal = OS,
  year = {2009},
  volume = {5},
  pages = {281--325}
}

@ARTICLE{Engerdahl_Tel95,
 author = {H. Engerdahl},
 year = {1995},
 title = {Use of the flow relaxation scheme in a three-dimensional baroclinic ocean model with realistic topography},
 journal = {Tellus},
 volume = {47A},
 pages = {365--382}
}

@ARTICLE{EUROMODEL_OA95,
  author = {EUROMODEL Group (P.M. Lehucher, L. Beautier, M. Chartier, F. Martel,
   L. Mortier, P. Brehmer, C. Millot, C. Alberola, M. Benzhora, I. Taupier-Letage,
   G. Chabert d'Hieres, H. Didelle, P. Gleizon, D. Obaton, M. Cr\'{e}pon,
   C. Herbaut, G. Madec, S. Speich, J. Nihoul, J. M. Beckers, P. Brasseur,
   E. Deleersnijder, S. Djenidi, J. Font, A. Castellon, E. Garcia-Ladona,
   M. J. Lopez-Garcia, M. Manriquez, M. Maso, J. Salat, J. Tintore,
   S. Alonso, D. Gomis, A. Viudez, M. Astraldi, D. Bacciola, M. Borghini,
   F. Dell'amico, C. Galli, E. Lazzoni, G. P. Gasparini, S. Sparnocchia,
   and A. Harzallah, 1995 : Progress from 1989 to 1992 in understanding
   the circulation of the Western Mediterranean Sea. Oceanologica Acta,
   18, 2, 255-271.},
  title = {EUROMODEL Group (P.M. Lehucher, L. Beautier, M. Chartier, F. Martel,
   L. Mortier, P. Brehmer, C. Millot, C. Alberola, M. Benzhora, I. Taupier-Letage,
   G. Chabert d'Hieres, H. Didelle, P. Gleizon, D. Obaton, M. Cr\'{e}pon,
   C. Herbaut, G. Madec, S. Speich, J. Nihoul, J. M. Beckers, P. Brasseur,
   E. Deleersnijder, S. Djenidi, J. Font, A. Castellon, E. Garcia-Ladona,
   M. J. Lopez-Garcia, M. Manriquez, M. Maso, J. Salat, J. Tintore,
   S. Alonso, D. Gomis, A. Viudez, M. Astraldi, D. Bacciola, M. Borghini,
   F. Dell'amico, C. Galli, E. Lazzoni, G. P. Gasparini, S. Sparnocchia,
   and A. Harzallah, 1995 : Progress from 1989 to 1992 in understanding
   the circulation of the Western Mediterranean Sea.},
  journal = {Oceanologica Acta},
  year = {1995},
  volume = {18},  number = {2},
  pages = {255--271}
}

@PHDTHESIS{Farge1987,
  author = {M. Farge},
  title = {Dynamique non lineaire des ondes et des tourbillons dans les equations de Saint Venant},
  school = {Doctorat es Mathematiques, Paris VI University},
  year = {1987},
  pages = {401pp}
}

@ARTICLE{Farrow1995,
  author = {D. E. Farrow and D. P. Stevens},
  title = {A new tracer advection scheme for Bryan--Cox type ocean general circulation
   models},
  journal = JPO,
  year = {1995},
  volume = {25},
  pages = {1731--1741.}
}

@ARTICLE{Flather1976,
 author = {R.A. Flather},
 year = {1976},
 title = {A tidal model of the north-west European continental shelf},
 journal = {Memoires de la Societ\'{e} Royale des Sciences de Li\`{e}ge},
 volume = {6},
 pages = {141--164}
}

@ARTICLE{Flather_JPO94,
 author = {R.A. Flather},
 year = {1994},
 title = {A storm surge prediction model for the northern Bay of Bengal with application to the cyclone disaster in April 1991},
 journal = JPO,
 volume = {24},
 pages = {172--190}
}

@ARTICLE{Fujio1991,
  author = {S. Fujio and N. Imasato},
  title = {Diagnostic calculation for circulation and water mass movement in
   the deep Pacific},
  journal = JGR,
  year = {1991},
  volume = {96},
  pages = {759--774}
}

@ARTICLE{Galperin_al_JAS88,
  author = {B. Galperin and L. H. Kantha and S. Hassid and A. Rosati},
  title = {A quasi-equilibrium turbulent energy model for geophysical flows},
  journal = JAS,
  year = {1988},
  volume = {45},
  pages = {55--62}
}

@ARTICLE{Gargett1984,
  author = {A. E. Gargett},
  title = {Vertical eddy diffusivity in the ocean interior},
  journal = JMR,
  year = {1984},
  volume = {42}
}

@ARTICLE{Gaspar1990,
  author = {P. Gaspar and Y. Gr{\'e}goris and J.-M. Lefevre},
  title = {A simple eddy kinetic energy model for simulations of the oceanic vertical mixing\: 
    Tests at Station Papa and long-term upper ocean study site},
  journal = JGR,
  year = {1990},
  volume = {95},  number = {C9}
}

@ARTICLE{Gent1990,
  author = {P. R. Gent and J. C. Mcwilliams},
  title = {Isopycnal Mixing in Ocean Circulation Models},
  journal = JPO,
  year = {1990},
  volume = {20},  number = {1},
  pages = {150--155},
}

@Article{Gentemann_al_JGR09,
  author =   {C. L. Gentemann  and P. J. Minnett and B. Ward},
  title =        {Profiles of Ocean Surface heating ({POSH}): A new model 
                  of upper ocean diurnal warming},
  journal =     JGR,
  year =     {2009},
  Volume =   {114},
  Pages =    {C07017},
  doi =   {10.1029/2008JC004825},
  OPTannote =   {}
}

@ARTICLE{Gerdes1993a,
  author = {R. Gerdes},
  title = {A primitive equation ocean circulation model using a general vertical
   coordinate transformation 1. Description and testing of the model},
  journal = JGR,
  year = {1993},
  volume = {98}
}

@ARTICLE{Gerdes1993b,
  author = {R. Gerdes},
  title = {A primitive equation ocean circulation model using a general vertical
   coordinate transformation 2. Application to an overflow problem},
  journal = JGR,
  year = {1993},
  volume = {98},
  pages = {14703--14726}
}
@ARTICLE{Gerdes1991,
   Author = {Gerdes, R{\"u}diger and K{\"o}berle, Cornelia and Willebrand, J{\"u}rgen},
   Doi = {10.1007/BF00210006},
   Journal = {Clim. Dynamics},
   Number = {4},
   Pages = {211--226},
   Title = {The influence of numerical advection schemes on the results of ocean general circulation models},
   Url = {http://dx.doi.org/10.1007/BF00210006},
   Volume = {5},
   Year = {1991},
}
@TECHREPORT{Gibson_TR86,
  author = {J. K. Gibson},
  title = {Standard software development and maintenance},
  institution = {Operational Dep., ECMWF, Reading, UK.},
  year = {1986}
}

@BOOK{Gill1982,
  title = {Atmosphere-Ocean Dynamics},
  publisher = {International Geophysics Series, Academic Press, New-York},
  year = {1982},
  author = {A. E. Gill}
}

@ARTICLE{Goosse_al_JGR99,
  author = {H. Goosse and E. Deleersnijder and T. Fichefet and M. England},
  title = {Sensitivity of a global coupled ocean-sea ice model to the parameterization of vertical mixing},
  journal = JGR,
  year = {1999},
  volume = {104},
  pages = {13,681--13,695}
}

@ARTICLE{Gorgues_al_GRL07,
  author = {T. Gorgues and C. Menkes and O. Aumont and K. Rodgers and G. Madec and Y. Dandonneau},
  title = {Indonesian Throughflow control of the eastern equatorial Pacific biogeochemistry},
  journal = GRL,
  year = {2007},
  volume = {34},
  pages = {L05609},
  doi = {10.1029/2006GL028210},
  url = {http://dx.doi.org/10.1029/2006GL028210}
}

@ARTICLE{Greatbatch_JGR94,
  author = {R. J. Greatbatch},
  title = {A note on the representation of steric sea level in models that conserve
   volume rather than mass},
  journal = JGR,
  year = {1994},
  volume = {99},  number = {C6},
  pages = {12,767--12,771}
}

@BOOK{Griffies_Bk04,
  title = {Fundamentals of ocean climate models},
  publisher = {Princeton University Press, 434pp},
  year = {2004},
  author = {S.M. Griffies}
}

@ARTICLE{Griffies_JPO98,
  author = {S.M. Griffies},
  title = {The Gent-McWilliams skew-flux},
  journal = JPO,
  year = {1998},
  volume = {28},
  pages = {831--841}
}

@ARTICLE{Griffies_al_OM09,
  author = {S.M. Griffies and A. Biastoch and C. Boning and F. Bryan and G. Danabasoglu
   and E. P. Chassignet and M. H. England and R. Gerdes and H. Haak
   and R. W. Hallberg and W. Hazeleger and J. Jungclaus and W. G. Large
   and G. Madec and A. Pirani and B. L. Samuels and M. Scheinert and
   A. Sen Gupta and C. A. Severijns and H. L. Simmons and A.-M. Treguier
   and M. Winton and S. Yeager and J. Yin},
  title = {Coordinated Ocean-ice Reference Experiments (COREs)},
  journal = OM,
  year = {2009},
  volume = {26},  number = {1-2},
  pages = {1--46},
  doi = {10.1016/j.ocemod.2008.08.007},
  url = {http://dx.doi.org/10.1016/j.ocemod.2008.08.007}
}

@ARTICLE{Griffies_al_OS05,
  author = {S.M. Griffies and A. Gnanadesikan and K.W. Dixon and J.P. Dunne and
   R. Gerdes and M.J. Harrison and A. Rosati and J.L. Russell and B.L.
   Samuels and M.J. Spelman and M. Winton and R. Zhang},
  title = {Formulation of an ocean model for global climate simulations},
  journal = OS,
  year = {2005},
  volume = {1},
  pages = {45--79}
  }

@ARTICLE{Griffies_al_JPO98,
  author = {S.M. Griffies and A. Gnanadesikan and R.C. Pacanowski and V.D. Larichev
   and J.K. Dukowicz and R.D. Smith},
  title = {Isoneutral Diffusion in a z-Coordinate Ocean Model},
  journal = JPO,
  year = {1998},
  volume = {28},  number = {5},
  pages = {805--830},
}

@ARTICLE{Griffies_al_MWR01,
  author = {S.M. Griffies and R.C. Pacanowski and M. Schmidt and V. Balaji},
  title = {Tracer Conservation with an Explicit Free Surface Method for z-Coordinate
   Ocean Models},
  journal = MWR,
  year = {2001},
  volume = {129},  number = {5},
  pages = {1081--1098},
}

@ARTICLE{Guilyardi_al_JC04,
  author = {E. Guilyardi and S. Gualdi and J. M. Slingo and A. Navarra and P. Delecluse 
    and J. Cole and G. Madec and M. Roberts and M. Latif and L. Terray},
  title = {Representing El Ni\~{n}o in coupled ocean-atmosphere GCMs: the dominant role of the atmospheric component},
  journal = JC,
  year = {2004},
  volume = {17},
  pages = {4623--4629}
}

@ARTICLE{Guilyardi_Madec_CD98,
  author = {E. Guilyardi and G. Madec},
  title = {Performance of the OPA-ARPEGE-T21 global ocean-atmosphere coupled model},
  journal = CD,
  year = {1997},
  volume = {13},
  pages = {149--165}
}

@ARTICLE{Guilyardi_al_CD01,
  author = {E. Guilyardi and G. Madec and L. Terray},
  title = {The role of lateral ocean physics in the upper ocean thermal balance of a coupled ocean-atmosphere GCM},
  journal = CD,
  year = {2001},
  volume = {17},
  pages = {589--599},
  number = {8}
}

@ARTICLE{Guilyardi_al_CRAS95,
  author = {E. Guilyardi and G. Madec and L. Terray and M. D\'{e}qu\'{e} and
   M. Pontaud and M. Imbard and D. Stephenson and M.-A. Filiberti and
   D. Cariolle and P. Delecluse and O. Thual},
  title = {Simulation couplée océan-atmosphère de la variabilité du climat},
  journal = {C. R. Acad. Sci Paris},
  year = {1995},
  volume = {320},  number = {s\'{e}rie IIa},
  pages = {683--690}
}

@ARTICLE{Guyon_al_EP99,
  author = {M. Guyon and G. Madec and F.-X. Roux and M. Imbard},
  title = {A Parallel ocean model for high resolution studies},
  journal = {Lecture Notes in Computer Science},
  year = {1999},
  volume = {Euro-Par'99},
  pages = {603--607}
}

@ARTICLE{Guyon_al_CalPar99,
  author = {M. Guyon and G. Madec and F.-X. Roux and M. Imbard and C. Herbaut
   and P. Fronier},
  title = {Parallelization of the OPA ocean model},
  journal = {Calculateurs Paralleles},
  year = {1999},
  volume = {11},  number = {4},
  pages = {499--517}
}

@BOOK{Haltiner1980,
  title = {Numerical prediction and dynamic meteorology},
  publisher = {John Wiley {\&} Sons Eds., second edition},
  year = {1980},
  author = {G. J. Haltiner and R. T. Williams},
  pages = {477pp}
}

@ARTICLE{Haney1991,
  author = {R. L. Haney},
  title = {On the Pressure Gradient Force over Steep Topography in Sigma Coordinate Ocean Models},
  journal = JPO,
  year = {1991},
  volume = {21},  number = {4},
  pages = {610--619},
}

@ARTICLE{Hazeleger_Drijfhout_JPO98,
  author = {W. Hazeleger and S. S. Drijfhout},
  title = {Mode water variability in a model of the subtropical gyre: response to anomalous forcing},
  journal = JPO,
  year = {1998},
  volume = {28},
  pages = {266--288},
}

@ARTICLE{Hazeleger_Drijfhout_JPO99,
  author = {W. Hazeleger and S. S. Drijfhout},
  title = {Stochastically forced mode water variability},
  journal = JPO,
  year = {1999},
  volume = {29},
  pages = {1772--1786},
}

@ARTICLE{Hazeleger_Drijfhout_JGR00,
  author = {W. Hazeleger and S. S. Drijfhout},
  title = {A model study on internally generated variability in subtropical mode water formation},
  journal = JGR,
  year = {2000},
  volume = {105},
  pages = {13,965--13,979},
}
@ARTICLE{Hazeleger_Drijfhout_JPO00,
  author = {W. Hazeleger and S. S. Drijfhout},
  title = {Eddy subduction in a model of the subtropical gyre},
  journal = JPO,
  year = {2000},
  volume = {30},
  pages = {677--695},
}

@ARTICLE{Hellerman_Rosenstein_JPO83,
  author = {S. Hellerman and  M. Rosenstein },
  title = {Normal monthly wind stress over the world ocean with error estimates},
  journal = JPO,
  year = {1983},
  volume = {13},
  pages = {1093--1104},
}

@ARTICLE{He_Ding_JSC01,
  author = {Y. He and C. H. Q. Ding},
  title = {Using Accurate Arithmetics to Improve Numerical Reproducibility and Stability in Parallel Applications},
  journal = JSC,
  year = {2001},
  volume = {18},
  pages = {259--277},
}

@ARTICLE{Hirt_al_JCP74,
  author = {C. W. Hirt and A. A. Amsden and J. L. Cook},
  title = {An Arbitrary Lagrangian--Eulerian Computing Method for All Flow Speeds},
  journal = JCP,
  year = {1974},
  volume = {14},
  pages = {227--253}
}

@ARTICLE{Hofmeister_al_OM09,
  author = {R. Hofmeister and H. Burchard and J.-M. Beckers},
  title = {Non-uniform adaptive vertical grids for 3D numerical ocean models},
  journal = OM,
  year = {2009},
  volume = {33},
  pages = {70--86},
  doi = {10.1016/j.ocemod.2009.12.003},
  url = {http://dx.doi.org/10.1016/j.ocemod.2009.12.003},
  issn = {1463-5003},
}

@ARTICLE{HollowayOM86,
  author = {Greg Holloway},
  title = {A Shelf Wave/Topographic Pump Drives Mean Coastal Circulation (part I)},
  journal = OM,
  year = {1986},
  volume = {68},  
}

@ARTICLE{HollowayJPO92,
  author = {Greg Holloway},
  title = {Representing Topographic Stress for Large-Scale Ocean Models},
  journal = JPO,
  year = {1992},
  volume = {22},  
  pages = {1033--1046},
}

@ARTICLE{HollowayJPO94,
  author = {Michael Eby and Greg Holloway},
  title = {Sensitivity of a Large-Scale Ocean Model to a Parameterization of Topographic Stress},
  journal = JPO,
  year = {1994},
  volume = {24},  
  pages = {2577--2587},
}

@ARTICLE{HollowayJGR09,
  author = {Greg Holloway and Zeliang Wang},
  title = {Representing eddy stress in an Arctic Ocean model},
  journal = JGR,
  year = {2009},
  doi = {10.1029/2008JC005169},  
}

@ARTICLE{HollowayOM08,
  author = {Mathew Maltrud and Greg Holloway},
  title = {Implementing biharmonic neptune in a global eddying ocean model},
  journal = OM,
  year = {2008},
  volume = {21},  
  pages = {22--34},
}

@ARTICLE{Hordoir_al_CD08,
  author = {R. Hordoir and J. Polcher and J.-C. Brun-Cottan and G. Madec},
  title = {Towards a parametrization of river discharges into ocean general
   circulation models: a closure through energy conservation},
  journal = CD,
  year = {2008},
  volume = {31},  number = {7-8},
  pages = {891--908},
  doi = {10.1007/s00382-008-0416-4},
  url = {http://dx.doi.org/10.1007/s00382-008-0416-4}
}

@ARTICLE{Hsu1990,
  author = {Hsu, Yueh-Jiuan G. and Arakawa, Akio},
  title = {Numerical Modeling of the Atmosphere with an Isentropic Vertical Coordinate},
  journal = MWR,
  year = {1990},
  volume = {118},  number = {10},
  pages = {1933--1959},
}

@ARTICLE{Huang_JPO93,
  author = {R.X. Huang},
  title = {Real freshwater flux as a natural boundary condition for the salinity
   balance and thermohaline circulation forced by evaporation and precipitation},
  journal = JPO,
  year = {1993},
  volume = {23},
  pages = {2428--2446}
}

@TECHREPORT{Hunke2008,
  author = {E.C. Hunke and W.H. Lipscomb},
  title = {CICE: the Los Alamos sea ice model documentation and software user's manual, 
        Version 4.0},
  institution = { Los Alamos National Laboratory, N.M.},
  publisher = {LA-CC-06-012, Los Alamos National Laboratory, N.M.},
  year = {2008}
}

@ARTICLE{Iudicone_al_JPO08b,
  author = {D. Iudicone and G. Madec and B. Blanke and S. Speich},
  title = {The role of Southern Ocean surface forcings and mixing in the global conveyor},
  journal = JPO,
  year = {2008},
  volume = {38},
  pages = {1377--1400}
}

@ARTICLE{Iudicone_al_JPO08a,
  author = {D. Iudicone and G. Madec and T. J. McDougall},
  title = {Diagnosing water transformations and the key role of light penetration},
  journal = JPO,
  year = {2008},
  volume = {38},
  pages = {1357--1376}
}

@ARTICLE{Iudicone_al_JPO07,
  author = {D. Iudicone and K. Rodgers and R. Schopp and G. Madec},
  title = {An Exchange window for the Antarctic Intermediate Water Injection into the South Pacific},
  journal = JPO,
  year = {2007},
  volume = {37},
  pages = {31--49}
}

@ARTICLE{Iudicone_al_JPO08c,
  author = {D. Iudicone and S. Speich and G. Madec and B. Blanke},
  title = {The global Conveyor Belt in a Southern Ocean perspective},
  journal = JPO,
  year = {2008},
  volume = {38},
  pages = {1401--1425}
}

@ARTICLE{Izumo_al_CD10,
  author = {T. Izumo and S.Masson and J. Vialard and C. de Boyer Montegut and
   S. K. Behera and G. Madec and K. Takahashi and T. Yamagata},
  title = {Interannual variations of low-frequency Madden-Julian Oscillation in autral summer: Observations},
  journal = CD,
  year = {2010},
  volume = {35},  number = {4},
  pages = {669--683},
  url = {http://dx.doi.org/10.1007/s00382-009-0655-z}
}

@ARTICLE{JackMcD1995,
  author = {D. R. Jackett and T. J. McDougall},
  title = {Minimal adjustment of hydrographic data to achieve static stability},
  journal = JAOT,
  year = {1995},
  volume = {12},
  pages = {381--389}
}

@ARTICLE{Jayne_St_Laurent_GRL01,
  author = {S.R. Jayne and L.C. {St. Laurent}},
  title = {Parameterizing tidal disspiation over rough topography},
  journal = GRL,
  pages = {811--814}
}

@BOOK{Jerlov_Bk68,
  title = {Optical Oceanography},
  publisher = {Elsevier},
  year = {1968},
  author = {N. G. Jerlov},
  pages = {194pp}
}

@ARTICLE{Jones_MWR99,
  author = {P. W. Jones},
  title = {First- and second-order conservative remapping schemes for grids in spherical coordinates},
  journal = MWR,
  year = {1999},
  volume = {127},
  pages = {2204--2210}
}

@BOOK{Jones_Bk01,
  title = {A User's Guide for SCRIP: A Spherical Coordinate Remapping and Interpolation Package. Version 1.4},
  publisher = {Los Alamos National Laboratory},
  year = {2001},
  author = {P. W. Jones},
  pages = {27pp},
  url = {http://climate.lanl.gov/Software/SCRIP/SCRIPusers.pdf}
}

@TECHREPORT{Jones_1998,
  title = {A User's Guide for SCRIP: A Spherical Coordinate Remapping and Interpolation Package. Version 1.4},
  institution = {Los Alamos National Laboratory},
  year = {1998},
  author = {P. W. Jones},
  url = {http://climate.lanl.gov/Software/SCRIP/SCRIPusers.pdf}
} 

@ARTICLE{Kantha_Clayson_1994,
  author = {L. H. Kantha and C. A. Clayson},
  title = {An improved mixed layer model for geophysical applications},
  journal = JGR,
  year = {1994},
  volume = {99},
  pages = {25,235--25,266}
}

@ARTICLE{Kantha_Carniel_CSR05,
  author = {L. Kantha and S. Carniel},
  title = {Comment on ''Generic length-scale equation for geophysical turbulence models'' by L. Umlauf and H. Burchard},
  journal = JMS, 
  year = {2005},
  volume = {61},
  pages = {693--702}
}

@ARTICLE{Kasahara_MWR74,
  author = {A. Kasahara},
  title = {Various vertical coordinate systems used for numerical weather prediction},
  journal = MWR,
  year = {1974},
  volume = {102},
  pages = {509--522}
}

@ARTICLE{Killworth_al_JPO91,
  author = {P.D. Killworth and D. Stainforth and D.J. Webb and S.M. Paterson},
  title = {The Development of a Free-Surface Bryan-Cox-Semtner Ocean Model},
  journal = JPO,
  year = {1991},
  volume = {21},  number = {9},
  pages = {1333--1348}
}

@INPROCEEDINGS{Killworth1989,
  author = {P. D. Killworth},
  title = {On the parameterization of deep convection in ocean models},
  booktitle = {Parameterization of small-scale processes},
  year = {1989},
  editor = {Hawaiian winter workshop},
  month = {January 17-20},
  organization = {University of Hawaii at Manoa}
}

@ARTICLE{Killworth1992,
  author = {P. D. Killworth},
  title = {An equivalent-barotropic mode in the fine resolution Antarctic model},
  journal = JPO,
  year = {1992},
  volume = {22},
  pages = {1379--1387}
}

@ARTICLE{Koch-Larrouy_al_CD10,
  author = {A. Koch-Larrouy and M. Lengaigne and P. Terray and G. Madec and S. Masson},
  title = {Tidal mixing in the Indonesian Seas and its effect on the tropical climate system},
  journal = CD,
  year = {2010},
  volume = {34},  number = {6},
  pages = {891--904},
  doi = {10.1007/s00382-009-0642-4},
  url = {http://dx.doi.org/10.1007/s00382-009-0642-4}
}

@ARTICLE{Koch-Larrouy_al_OD08b,
  author = {A. Koch-Larrouy and G. Madec and B. Blanke and R. Molcard},
  title = {Water mass transformation along the Indonesian throughflow in an OGCM},
  journal = OD,
  year = {2008},
  volume = {58},  number = {3-4},
  pages = {289--309},
  doi = {10.1007/s10236-008-0155-4},
  url = {http://dx.doi.org/10.1007/s10236-008-0155-4}
}

@ARTICLE{Koch-Larrouy_al_GRL07,
  author = {A. Koch-Larrouy and G. Madec and P. Bouruet-Aubertot and T. Gerkema and L. Bessieres and R. Molcard},
  title = {Tidal mixing in the Indonesian Seas and its effect on the tropical climate system},
  journal = GRL,
  year = {2007},
  volume = {34},
  pages = {L04604},
  doi = {10.1029/2006GL028405},
  url = {http://dx.doi.org/10.1029/2006GL028405}
}

@ARTICLE{Koch-Larrouy_al_OD08a,
  author = {A. Koch-Larrouy and G. Madec and D. Iudicone and A. Atmadipoera and R. Molcard},
  title = {Physical processes contributing to the water mass transformation of the Indonesian Throughflow},
  journal = OD,
  year = {2008},
  volume = {58},  number = {3-4},
  pages = {275--288},
  doi = {10.1007/s10236-008-0154-5},
  url = {http://dx.doi.org/10.1007/s10236-008-0154-5}
}

@ARTICLE{Kolmogorov1942,
  author = {A. N. Kolmogorov},
  title = {The equation of turbulent motion in an incompressible fluid},
  journal = {Izv. Akad. Nauk SSSR, Ser. Fiz.},
  year = {1942},
  volume = {6},
  pages = {56--58}
}
@ARTICLE{Kondo1975,
  author = {J. Kondo},
  title = {Air-sea bulk transfer coefficients in diabatic conditions},
  journal = {Boundary-Layer Meteorol},
  year = {1975},
  volume = {9},
  pages = {91--112}
}

@ARTICLE{Lermusiaux2001,
  author = {P. F. J. Lermusiaux},
  title = {Evolving the subspace of three-dimensional miltiscale ocean variability: Massachusetts Bay},
  journal = JMS,
  year = {2001},
  volume = {29},
  pages = {385--422}
}

@PHDTHESIS{Levy_PhD96,
  author = {M. L\'{e}vy},
  title = {Mod\'{e}lisation des processus biog\'{e}ochimiques en M\'{e}diterran\'{e}e
   nord-occidentale. Cycle saisonnier et variabilit\'{e} m\'{e}so\'{e}chelle},
  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 207pp},
  year = {1996}
}

@ARTICLE{Levy_al_GRL01,
  author = {M. L\'{e}vy and A. Estubier and G Madec},
  title = {Choice of an advection scheme for biogeochemical models},
  journal = GRL,
  year = {2001},
  volume = {28}
}

@ARTICLE{Levy_al_OM10,
  author = {M. L\'{e}vy and P. Klein and A.-M. Tr\'{e}guier and D. Iovino and
   G. Madec and S. Masson and T. Takahashi},
  title = {Impacts of sub-mesoscale physics on idealized gyres},
  journal = OM,
  year = {2010},
  volume = {34},  number = {1-2},
  doi = {10.1016/j.ocemod.2010.04.001},
  url = {http://dx.doi.org/10.1016/j.ocemod.2010.04.001}
}

@ARTICLE{Levy_al_JMS99,
  author = {M. L\'{e}vy and L. M\'{e}mery and G. Madec},
  title = {The onset of a bloom after deep winter convection in the Northwestern
   Mediterranean Sea: mesoscale process study with a primitive equation
   model},
  journal = JMS,
  year = {1999},
  volume = {16},  number = {1-2},
  pages = {7--21}
}

@ARTICLE{Levy_al_DSR98,
  author = {M. L\'{e}vy and L. M\'{e}mery and G. Madec},
  title = {The onset of the spring bloom in the MEDOC area: mesoscale spatial
   variability},
  journal = DSR,
  year = {1998},
  volume = {I},  number = {46},
  pages = {1137--1160}
}

@ARTICLE{Levy_al_DSR00,
  author = {M. L\'{e}vy and L. M\'{e}mery and G. Madec},
  title = {Combined effects of mesoscale processes and atmospheric high-frequency
   variability on the spring bloom in the MEDOC area},
  journal = DSR,
  year = {2000},
  volume = {47},
  pages = {527--531}
}

@BOOK{Large_Yeager_Rep04,
  title = {Diurnal to decadal global forcing for ocean and sea-ice models: the data sets and flux climatologies},
  publisher = {NCAR Technical Note, NCAR/TN-460+STR, CGD Division of the National Center for Atmospheric Research},
  year = {2004},
  author = {W. G. Large and S. Yeager}}

@ARTICLE{Large_al_RG94,
  author = {W. G. Large and J. C. McWilliams and S. C. Doney},
  title = {Oceanic vertical mixing - a review and a model with a nonlocal boundary layer parameterization},
  journal = {Reviews of Geophysics},
  year = {1994},
  volume = {32},
  pages = {363--404},
  doi = {10.1029/94RG01872},
  url = {http://dx.doi.org/10.1029/94RG01872}
}

@ARTICLE{Latif_al_JC06,
  author = {M. Latif and C. Böning and J. Willebrand and A. Biastoch and J. Dengg
   and N. Keenlyside and U. Schweckendiek and G. Madec},
  title = {Is the Thermohaline Circulation Changing?},
  journal = JC,
  year = {2006},
  volume = {19},
  pages = {4631--4637}
}

@PHDTHESIS{Lazar_PhD97,
  author = {A. Lazar},
  title = {La branche froide de la circulation thermohaline - sensibilit\'{e}
   \`{a} la diffusion turbulente dans un mod\`{e}le de circulation g\'{e}n\'{e}rale
   id\'{e}alis\'{e}e},
  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 200pp},
  year = {1997}
}

@ARTICLE{Lazar_al_JPO99,
  author = {A. Lazar and G. Madec and P. Delecluse},
  title = {The Deep Interior Downwelling, the Veronis Effect, and Mesoscale
   Tracer Transport Parameterizations in an OGCM},
  journal = JPO,
  year = {1999},
  volume = {29},  number = {11},
  pages = {2945--2961},
}

@ARTICLE{Le_Sommer_al_OM09,
  author = {J. {Le Sommer} and T. Penduff and S. Theetten and G. Madec and B.
   Barnier},
  title = {How momentum advection schemes influence current-topography interactions
   at eddy permitting resolution},
  journal = OM,
  year = {2009},
  volume = {29},  number = {1},
  pages = {1--14},
  doi = {10.1016/j.ocemod.2008.11.007},
  url = {http://dx.doi.org/10.1016/j.ocemod.2008.11.007}
}

@PHDTHESIS{Leclair_PhD2010,
  author = {M. Leclair},
  title = {introduction d'une coordonn\'{e}e verticale arbitrairement Lagrangienne
   Eul\'{e}rienne dans le code NEMO, 180pp.},
  school = {Universit\'{e} Pierre and Marie Curie},
  year = {2010}
}

@ARTICLE{Leclair_Madec_OM09,
  author = {M. Leclair and G. Madec},
  title = {A conservative leap-frog time stepping method},
  journal = OM,
  year = {2009},
  volume = {30},  number = {2-3},
  pages = {88-94},
  doi = {10.1016/j.ocemod.2009.06.006},
  url = {http://dx.doi.org/}
}

@ARTICLE{Leclair_Madec_OM10s,
  author = {M. Leclair and G. Madec},
  title = {$\tilde{z}$-coordinate, an Arbitrary Lagrangian-Eulerian coordinate separating high and low frequency},
  journal = OM,
  year = {2010},
  pages = {submitted},
}

@ARTICLE{Lengaigne_al_JC03,
  author = {M. Lengaigne and J.-P. Boulanger and C. Menkes and G. Madec and P.
   Delecluse and E. Guilyardi, and J. Slingo},
  title = {The March 1997 Westerly Wind Event and the onset of the 1997/98 El
   Niño: Understanding the role of the atmospheric},
  journal = JC,
  year = {2003},
  volume = {16},  number = {20},
  pages = {3330--3343}
}

@ARTICLE{Lengaigne_al_JGR02,
  author = {M. Lengaigne and J.-P. Boulanger and C. Menkes and S. Masson and
   G. Madec and P. Delecluse},
  title = {Ocean response to the March 1997 Westerly Wind Event},
  journal = JGR,
  year = {2002},
  doi = {10.1029/2001JC000841},
  url = {http://dx.doi.org/10.1029/2001JC000841}
}

@ARTICLE{Lengaigne_al_JGR03,
  author = {M. Lengaigne and G. Madec and G. Alory and C. Menkes},
  title = {Sensitivity of the tropical Pacific Ocean to isopycnal diffusion
   on tracer and dynamics},
  journal = JGR,
  year = {2003},
  volume = {108},  number = {C11},
  pages = {3345},
  doi = {10.1029/2002JC001704},
  url = {http://dx.doi.org/10.1029/2002JC001704}
}

@ARTICLE{Lengaigne_al_GRL09,
  author = {M. Lengaigne and G. Madec and L. Bopp and C. Menkes and O. Aumont and P. Cadule},
  title = {Bio-physical feedbacks in the Arctic Ocean using an Earth System model},
  journal = GRL,
  year = {2009},
  volume = {36},  
  pages = {L21602},
  doi = {10.1029/2009GL040145},
  url = {http://dx.doi.org/10.1029/2009GL040145}
}

@ARTICLE{Lengaigne_al_CD07,
  author = {M. Lengaigne and C. Menkes and O. Aumont and T. Gorgues and L. Bopp and J.-M. Andr\'{e} G. Madec},
  title = {Bio-physical feedbacks on the tropical Pacific climate in a Coupled
   General Circulation Model},
  journal = CD,
  year = {2007},
  volume = {28},
  pages = {503--516}
}

@ARTICLE{Leonard1991,
  author = {B. P. Leonard},
  title = {The ULTIMATE conservative difference scheme applied to unsteady one--dimensional advection},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  year = {1991},
  pages = {17--74}
}

@TECHREPORT{Leonard_Rep88,
  author = {B. P. Leonard},
  title = {Universal limiter for transient interpolation modelling of the advective transport equations},
  institution = {Technical Memorandum TM-100916 ICOMP-88-11, NASA},
  year = {1988}
}

@ARTICLE{Leonard1979,
  author = {B. P. Leonard},
  title = {A stable and accurate convective modelling procedure based on quadratic
   upstream interpolation},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  year = {1979},
  volume = {19},
  pages = {59--98},
}

@TECHREPORT{Levier2007,
  author = {B. Levier and A.-M. Tr\'{e}guier and G. Madec and V. Garnier},
  title = {Free surface and variable volume in the NEMO code},
  institution = {MERSEA MERSEA IP report WP09-CNRS-STR-03-1A, 47pp, available on the
   NEMO web site},
  year = {2007}
}

@BOOK{levitus82,
  title = {Climatological Atlas of the world ocean},
  publisher = {NOAA professional paper No. 13, 174pp},
  year = {1982},
  author = {S Levitus },
  pages = {173 pp}
}

@ARTICLE{Li_Garrett_JMR93,
  author = {M. Li and C. Garrett},
  title = {Cell merging and the jet/downwelling ratio in Langmuir circulation},
  journal = JMR,
  year = {1993},
  volume = {51},
  pages = {737--769}
}

@TECHREPORT{Lott1989,
  author = {F. Lott and G. Madec},
  title = {Implementation of bottom topography in the Ocean General Circulation
   Model OPA of the LODYC: formalism and experiments.},
  institution = {LODYC, France, 36pp.},
  year = {1989},
  number = {3}
}

@ARTICLE{Lott_al_OM90,
  author = {F. Lott and G. Madec and J. Verron},
  title = {Topographic experiments in an Ocean General Circulation Model},
  journal = OM,
  year = {1990},
  volume = {88},
  pages = {1--4}
}

@ARTICLE{Luo_al_JC05,
  author = {J.-J. Luo and S. Masson and E. Roeckner and G. Madec and T. Yamagata},
  title = {Reducing climatology bias in an ocean-atmosphere CGCM with improved
   coupling physics},
  journal = JC,
  year = {2005},
  volume = {18},  number = {13},
  pages = {2344--2360}
}

@BOOK{Madec_Bk08,
  title = {NEMO ocean engine},
  publisher = {Note du P\^ole de mod\'{e}lisation, Institut Pierre-Simon Laplace
   (IPSL), France, No 27, ISSN No 1288-1619},
  year = {2008},
  author = {G. Madec}
}

@BOOK{Madec_HDR01,
  title = {Le Cycle des Masses d'Eau Oc\'{e}aniqueset sa variabilit\'{e} dans le Syst\'{e}me Climatique},
  year = {2001},
  author = {G. Madec},
  pages = {63pp.},
  series = {Habilitation \'{a} Diriger des Recherches, Universit\'{e} Pierre et Marie Curie}
}

@PHDTHESIS{Madec_PhD90,
  author = {G. Madec},
  title = {La formation d'eau profonde et son impact sur la circulation r\'{e}gionale
   en M\'{e}diterran\'{e}e Occidentale - une approche num\'{e}rique},
  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 194pp.},
  year = {1990},
  month = {2 mai}
}

@ARTICLE{Madec_al_DAO91,
  author = {G. Madec and M. Chartier and M. Cr\'{e}pon},
  title = {Effect of thermohaline forcing variability on deep water formation
   in the Northwestern Mediterranean Sea - a high resulution three-dimensional
   study},
  journal = DAO,
  year = {1991},
  volume = {15},
  pages = {301--332}
}

@ARTICLE{Madec_al_JPO91,
  author = {G. Madec and M. Chartier and P. Delecluse and M. Cr\'{e}pon},
  title = {A three-dimensional numerical study of deep water formation in the Northwestern Mediterranean Sea .},
  journal = JPO,
  year = {1991},
  volume = {21},
  pages = {1349--1371}
}

@INBOOK{Madec_Crepon_Bk91,
  chapter = {Thermohaline-driven deep water formation in the Northwestern Mediterranean
   Sea},
  pages = {241--265},
  title = {Deep convection and deep water formation in the oceans},
  publisher = {Elsevier Oceanographic Series, P.C. Chu and J.C. Gascard (Eds.)},
  year = {1991},
  author = {G. Madec and M. Cr\'{e}pon}
  }

@ARTICLE{Madec1997,
  author = {G. Madec and P. Delecluse},
  title = {The OPA/ARPEGE and OPA/LMD Global Ocean-Atmosphere Coupled Model},
  journal = {Int. WOCE Newsletter},
  year = {1997},
  volume = {26},
  pages = {12--15}
}

@TECHREPORT{Madec1998,
  author = {G. Madec and P. Delecluse and M. Imbard and C. Levy},
  title = {OPA 8 Ocean General Circulation Model - Reference Manual},
  institution = {LODYC/IPSL Note 11},
  year = {1998}
}

@ARTICLE{Madec_Imbard_CD96,
  author = {G Madec and M Imbard},
  title = {A global ocean mesh to overcome the north pole singularity},
  journal = CD,
  year = {1996},
  volume = {12},
  pages = {381--388}
}

@ARTICLE{Madec_al_JPO96,
  author = {G. Madec and F. Lott and P. Delecluse and M. Cr\'{e}pon},
  title = {Large-Scale Preconditioning of Deep-Water Formation in the Northwestern
   Mediterranean Sea},
  journal = JPO,
  year = {1996},
  volume = {26},  number = {8},
  pages = {1393--1408},
}

@ARTICLE{Madec_al_OM88,
  author = {G. Madec and C. Rahier and M. Chartier},
  title = {A comparison of two-dimensional elliptic solvers for the streamfunction
   in a multilevel OGCM},
  journal = OM,
  year = {1988},
  volume = {78},
  pages = {1-6}
}

@ARTICLE{Maes_al_CD98,
  author = {C. Maes and P. Delecluse and G. Madec},
  title = {Impact of westerly wind bursts on the warm pool of the TOGA-COARE
   domain in an OGCM},
  journal = CD,
  year = {1998},
  volume = {14},
  pages = {55--70}
}

@ARTICLE{Maes_al_MWR97,
  author = {C. Maes and G. Madec and P. Delecluse},
  title = {Sensitivity of an Equatorial Pacific OGCM to the lateral diffusion},
  journal = MWR,
  year = {1997},
  volume = {125},  number = {5},
  pages = {958--971}
}

@ARTICLE{Maggiore_al_PCE98,
  author = {A. Maggiore and  M. Zavatarelli and M. G. Angelucci and N. Pinardi},
  title = {Surface heat and water fluxes in the Adriatic Sea: seasonal and interannual variability},
  journal = {Phys Chem Earth},
  year = {1998},
  volume = {23},
  pages = {561--567}
}

@ARTICLE{Maltrud1998,
  author = {M. E. Maltrud and R. D. Smith and A. J. Semtner and R. C. Malone},
  title = {Global eddy-resolving ocean simulations driven by 1985-1995 atmospheric
   winds},
  journal = JGR,
  year = {1998},
  volume = {103},  number = {C13},
  pages = {30,825--30,854}
}

@ARTICLE{Marchesiello2001,
  author = { P. Marchesiello and J. Mc Williams and A. Shchepetkin },
  title = {Open boundary conditions for long-term integrations of Regional Oceanic
   Models},
  journal = OM,
  year = {2001},
  volume = {3},
  pages = {1--20}
}


@article{Martin_Adcroft_OM10,
author = {T. Martin and A. Adcroft},
title = {Parameterizing the fresh-water flux from land ice to ocean with interactive icebergs in a coupled climate model},
journal = OM,
year = {2010},
volume = {34}, number = {3--4},
pages = {111--124},
issn = {1463-5003},
doi = {10.1016/j.ocemod.2010.05.001},
url = {http://dx.doi.org/10.1016/j.ocemod.2010.05.001}
}

@ARTICLE{Marsaleix_al_OM08,
  author = {P. Marsaleix and F. Auclair and J. W. Floor and M. J. Herrmann and
   C. Estournel and I. Pairaud and C. Ulses},
  title = {Energy conservation issues in sigma-coordinate free-surface ocean
   models},
  journal = OM,
  year = {2008},
  volume = {20},  number = {1},
  pages = {61--89},
  doi = {10.1016/j.ocemod.2007.07.005},
  url = {http://dx.doi.org/10.1016/j.ocemod.2007.07.005}
}

@BOOK{MIT-GCM_2004,
  title = {MIT-gcm User Manual},
  year = {2004},
  editor = {MIT Department of EAPS},
  author = {J. Marshall and A. Adcroft and J.-M. Campin and P. Heimbach and A.
   Molod and S. Dutkiewicz and H. Hill and M. Losch and B. Fox-Kemper
   and D. Menemenlis and D. Ferreira and E. Hill and M. Follows and
   C. Hill and C. Evangelinos and G. Forget}
   }

@PHDTHESIS{Marti_PhD92,
  author = {O. Marti},
  title = {Etude de l'oc\'{e}an mondial : mod\'{e}lisation de la circulation
   et du transport de traceurs anthropog\'{e}niques},
  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 201pp},
  year = {1992}
}

@ARTICLE{Marti_al_CD10,
  author = {O. Marti and P. Braconnot and J.-L. Dufresne and J. Bellier and R.
   Benshila and S. Bony and P. Brockmann and P. Cadule and A. Caubel
   and F Codron and S. Denvil and L. Fairhead and T. Fichefet and M.-A.
   Filiberti and M.-A. Foujols and P. Friedlingstein and H. Goosse and
   J.-Y. Grandpeix and E. Guilyardi and F. Hourdin and G. Krinner and
   C. L\'{e}vy and G. Madec and J. Mignot and I. Musat and D. Swingedouw
   and C. Talandier},
  title = {Key features of the IPSL ocean atmosphere model and its sensitivity
   to atmospheric resolution},
  journal = CD,
  year = {2010},
  volume = {34},  number = {1},
  pages = {1--26},
  doi = {10.1007/s00382-009-0640-6},
  url = {http://dx.doi.org/10.1007/s00382-009-0640-6}
}

@ARTICLE{Marti_al_JGR92,
  author = {O. Marti and G. Madec and P. Delecluse},
  title = {Comment on "Net diffusivity in ocean general circulation models with
   nonuniform grids" by F. L. Yin and I. Y. Fung},
  journal = JGR,
  year = {1992},
  volume = {97},
  pages = {12,763--12,766}
}

@INBOOK{Masson_al_Bk08,
  chapter = {OPA9 - French experiments on the Earth Simulator and Teraflop Workbench
   tunings},
  pages = {25-34},
  title = {In High Performance computing on Vector System 2007, Stuttgart, Germany},
  publisher = {Springer-Verlag},
  year = {2008},
  editor = {Resch M, Roller S, Lammers P, Furui T, Galle M, Bez W},
  author = {S. Masson and M.-A. Foujols and P. Klein and G. Madec and L. Hua and M. Levy 
  and H. Sasaki and K. Takahashi and F. Svensson},
  doi = {10.1007/978-3-540-74384-2},
  url = {http://dx.doi.org/10.1007/978-3-540-74384-2}
}

@ARTICLE{Masson_al_GRL05,
  author = {S. Masson and J.-J. Luo and G. Madec and J. Vialard and F. Durand
   and S. Gualdi and E. Guilyardi and S. Behera and P. Delecluse and
   A. Navarra and T. Yamagata},
  title = {Impact of barrier layer on winter-spring variability of the South-Eastern
   Arabian Sea},
  journal = GRL,
  year = {2005},
  volume = {32},
  pages = {L07703},
  doi = {10.1029/2004GL021980},
  url = {http://dx.doi.org/10.1029/2004GL021980}
}

@ARTICLE{McDougall1987,
  author = {T. J. McDougall},
  title = {Neutral Surfaces},
  journal = JPO,
  year = {1987},
  volume = {17},  number = {11},
  pages = {1950--1964},
}

@ARTICLE{McDougall_Taylor_JMR84,
  author = {T. J. McDougall and J. R. Taylor},
  title = {Flux measurements across a finger interface at low values of the stability ratio},
  journal = JMR,
  year = {1984},
  volume = {42},
  pages = {1--14}
}

@ARTICLE{Mellor_Blumberg_JPO04,
author = {G. Mellor and A. Blumberg},
title = {Wave Breaking and Ocean Surface Layer Thermal Response},
journal = JPO,
volume = {34}, number = {3},
pages = {693--698},
year = {2004},
doi = {10.1175/2517.1},
URL = {http://journals.ametsoc.org/doi/abs/10.1175/2517.1}
}

@ARTICLE{Mellor_Yamada_1982,
  author = {G. L. Mellor and T. Yamada},
  title = {Development of a turbulence closure model for geophysical fluid problems},
  journal = RGSP,
  year = {1982},
  volume = {20},
  pages = {851--875}
}

@ARTICLE{Menkes_al_JPO06,
  author = {C. Menkes and J. Vialard and S C. Kennan and J.-P. Boulanger and G. Madec},
  title = {A modelling study of the three-dimensional heat budget of Tropical
    Instability Waves in the Equatorial Pacific},
  journal = JPO,
  year = {2006},
  volume = {36},  number = {5},
  pages = {847--865}
}

@ARTICLE{Merryfield1999,
  author = {W. J. Merryfield and G. Holloway and A. E. Gargett},
  title = {A Global Ocean Model with Double-Diffusive Mixing},
  journal = JPO,
  year = {1999},
  volume = {29},  number = {6},
  pages = {1124--1142}
}

@BOOK{Mesinger_Arakawa_Bk76,
  title = {Numerical methods used in Atmospheric models},
  publisher = {GARP Publication Series No 17},
  year = {1976},
  author = {F. Mesinger and A. Arakawa}
}

@ARTICLE{Morel_JGR88,
  author = {A. Morel},
  title = {Optical modeling of the upper ocean in relation to its biogenous matter content (Case I waters)},
  journal = JGR,
  year = {1988},
  volume = {93},
  pages = {10,749--10,768}
}

@ARTICLE{Morel_Maritorena_JGR01,
  author = {A. Morel and S. Maritorena},
  title = {Bio-optical properties of oceanic waters: a reappraisal},
  journal = JGR,
  year = {2001},
  volume = {106}, number = {C4},
  pages = {7163--7180}
}

@ARTICLE{Moun_al_JPO02,
  author = {J.N. Moum and D.R. Caldwell and J.D. Nash and G.D. Gunderson},
  title = {Observations of boundary mixing over the continental slope},
  journal = JPO,
  year = {2002},
  volume = {32}, number = {7},
  pages = {2113--2130}
}

@ARTICLE{Murray_JCP96,
  author = {R. J. Murray},
  title = {Explicit Generation of Orthogonal Grids for Ocean Models},
  journal = JCP,
  year = {1996},
  volume = {126},  number = {2},
  pages = {251--273},
}

@ARTICLE{Oddo_al_OS09,
  author = {P. Oddo and M. Adani and N. Pinardi and C. Fratianni and M. Tonani and D. Pettenuzzo},
  title = {A nested Atlantic-Mediterranean Sea general circulation model for operational forecasting},
  journal = OS,
  year = {2009},
  volume = {5},
  pages = {1--13},
}

@PHDTHESIS{Olivier_PhD01,
  author = {F. Olivier},
  title = {Etude de l'activit\'{e} biologique et de la circulation oc\'{e}anique
   dans un jet g\'{e}ostrophique: le front Alm\'{e}ria-Oran},
  school = {Universit\'{e} Pierre et Marie Curie, Paris, France},
  year = {2001}
}

@ARTICLE{Osborn_JPO80,
  author = {T.R. Osborn},
  title = {Estimates of the local rate of vertical diffusion from dissipation measurements},
  journal = JPO,
  volume = {10},
  pages = {83--89}
}

@ARTICLE{Pacanowski_Philander_JPO81,
  author = {R.C. Pacanowski and S.G.H. Philander},
  title = {Parameterization of Vertical Mixing in Numerical Models of Tropical Oceans},
  journal = JPO,
  year = {1981},
  volume = {11},  number = {11},
  pages = {1443--1451}
}

@ARTICLE{Pacanowski_Gnanadesikan_MWR98,
  author = {R. C. Pacanowski and A. Gnanadesikan},
  title = {Transient response in a z-level ocean model that resolves topography with partial-cells},
  journal = MWR,
  year = {1998},
  volume = {126},
  pages = {3248--3270}
}

@ARTICLE{Park_al_JC09,
  author = {W. Park and N. Keenlyside and M. Latif and A. Str\¨{o}h and R. Redler and E. Roeckner and G. Madec},
  title = {Tropical Pacific Climate and its Response to Global Warming in the
   Kiel Climate Model},
  journal = JC,
  year = {2009},
  volume = {22},  number = {1},
  pages = {71--92},
  doi = {10.1175/2008JCLI2261.1},
  url = {http://dx.doi.org/10.1175/2008JCLI2261.1}
}

@ARTICLE{Paulson1977,
  author = {C. A. Paulson and J. J. Simpson},
  title = {Irradiance Measurements in the Upper Ocean},
  journal = JPO,
  year = {1977},
  volume = {7},  number = {6},
  pages = {952--956}
}

@ARTICLE{Payne_JAS72,
  author = {R. E. Payne},
  title = {Albedo of the Sea Surface},
  journal = JAS,
  year = {1972},
  volume = {29},
  pages = {959--970}
}

@ARTICLE{Penduff_al_OM06,
  author = {T. Penduff and B. Barnier and J.-M. Molines and G. Madec},
  title = {On the use of current meter data to assess the realism of ocean model simulations},
  journal = OM,
  year = {2006},
  volume = {11},  number = {3--4},
  pages = {399--416}
}

@ARTICLE{Penduff_al_JGR00,
  author = {T. Penduff and B. Barnier and A. Colin de Verdi\`{e}re},
  title = {Self-adapting open boundaries for a regional model of the eastern North Atlantic},
  journal = JGR,
  year = {2000},
  volume = {105},
  pages = {11,279--11,297}
}

@ARTICLE{Penduff_al_OS07,
  author = {T. Penduff and J. Le Sommer and B. Barnier and A.M. Treguier and J. Molines and G. Madec},
  title = {Influence of numerical schemes on current-topography interactions
   in 1/4$^{\circ}$ global ocean simulations},
  journal = OS,
  year = {2007},
  volume = {3},
  pages = {509--524}
}

@ARTICLE{Phillips1959,
  author = {R. S. Phillips},
  title = {Dissipative Operators and Hyperbolic Systems of Partial Differential Equations},
  journal = {Transactions of the American Mathematical Society},
  year = {1959},
  volume = {90},  number = {2},
  pages = {193--254},
  doi = {10.2307/1993202},
  url = {http://dx.doi.org/10.2307/1993202}
}

@ARTICLE{Le_Quere_al_GBC00,
  author = {C. Le Qu\'{e}r\'{e} and J. C. Orr and P. Monfray and O. Aumont and G. Madec},
  title = {Interannual variability of the global and regional sea-air flux of C02 from 1979 to 1993},
  journal = GBC,
  year = {2000},
  volume = {14},
  pages = {1247--1266}
}

@ARTICLE{Raynaud_al_GRL00,
  author = {S. Raynaud and S. Speich and E. Guilyardi and G. Madec},
  title = {Impact of the ocean lateral diffusion on the ENSO-like variability of a global coupled GCM},
  journal = GRL,
  year = {2000},
  volume = {27},  number = {19},
  pages = {3041--3044}
}

@ARTICLE{Redi_JPO82,
  author = {M. H. Redi},
  title = {Oceanic isopycnal mixing by coordinate rotation},
  journal = JPO,
  year = {1982},
  volume = {13},
  pages = {1154--1158}
}

@ARTICLE{Reed_JPO77,
  author = {R. K. Reed},
  title = {On estimating insolation over the ocean},
  journal = JPO,
  year = {1977},
  volume = {1},
  pages = {874--971}
}

@ARTICLE{Reverdin1991,
  author = {G. Reverdin and P. Delecluse and C. L\'{e}vy and P. Andrich and A. Morli\`{e}re and J. M. Verstraete},
  title = {The near surface tropical Atlantic in 1982-1984 : results from a numerical simulation and a data analysis},
  journal = PO,
  year = {1991},
  volume = {27},
  pages = {273--340}
}

@BOOK{Richtmyer1967,
  title = {Difference methods for initial-value problems},
  publisher = {Interscience Publisher, Second Edition},
  year = {1967},
  author = {R. D. Richtmyer and K. W. Morton},
  pages = {405pp}
}

@ARTICLE{Robert_JMSJ66,
  author = {A. J. Robert},
  title = {The integration of a Low order spectral form of the primitive meteorological equations},
  journal = JMSJ,
  year = {1966},
  volume = {44},  number = {2}
}

@ARTICLE{Rodgers_al_GRL04,
  author = {K. Rodgers and O. Aumont and G. Madec and C. Menkes},
  title = {Radiocarbon as a thermocline proxy for the eastern equatorial Pacific},
  journal = GRL,
  year = {2004},
  volume = {31},
  pages = {L14314},
  doi = {10.1029/2004GL019764},
  url = {http://dx.doi.org/10.1029/2004GL019764}
}

@ARTICLE{Rodgers_al_GRL03,
  author = {K. Rodgers and B. Blanke and G. Madec and O. Aumont and P. Ciais and J.-C. Dutay},
  title = {Extratropical sources of equatorial pacific upwelling in an OGCM},
  journal = GRL,
  year = {2003},
  volume = {30},  number = {2},
  doi = {10.1029/2002GL016003},
  url = {http://dx.doi.org/10.1029/2002GL016003}
}

@ARTICLE{Rodi_1987,
  author = {W. Rodi},
  title = {Examples of calculation methods for flow and mixing in stratified fluids},
  journal = JGR,
  year = {1987},
  volume = {92},  number = {C5},
  pages = {5305--5328}
}

@INCOLLECTION{Roed1986,
  author = {L.P. Roed and C.K. Cooper},
  title = {Open boundary conditions in numerical ocean models},
  booktitle = {Advanced Physical Oceanography Numerical Modelling},
  publisher = { NATO ASI Series, vol. 186.},
  year = {1986},
  editor = {J.J. O'Brien}
}

@ARTICLE{Roullet_Madec_JGR00,
  author = {G. Roullet and G. Madec},
  title = {salt conservation, free surface, and varying levels: a new formulation
   for ocean general circulation models},
  journal = JGR,
  year = {2000},
  volume = {105},
  pages = {23,927--23,942}
}

@ARTICLE{Sadourny1975,
  author = {R. Sadourny},
  title = {The Dynamics of Finite-Difference Models of the Shallow-Water Equations},
  journal = JAS,
  year = {1975},
  volume = {32},  number = {4},
  pages = {680--689},
}

@ARTICLE{Sarmiento1982,
  author = {J. L. Sarmiento and K. Bryan},
  title = {Ocean transport model for the North Atlantic},
  journal = JGR,
  year = {1982},
  volume = {87},
  pages = {394--409}
}

@ARTICLE{Saunders_JAS82,
  author={P. M. Saunders},
  title={{The Temperature at the Ocean-air Interface}},
  journal=JAS,
  year={1967},
  volume={24},
  pages={269-273},
  doi = {10.1175/1520-0469(1967)024<0269:TTATOA>2.0.CO;2},
}

@BOOK{Shchepetkin_McWilliams_Bk08,
  author = {A. F. Shchepetkin and J. C. McWilliams},
  title = {Handbook of Numerical Analysis, Vol. XIV: Computational Methods for the Ocean and the Atmosphere, pp 121-183},
  publisher = {P. G. Ciarlet, editor, R. Temam and J. Tribbia, guest eds., Elsevier Science},
  year = {2008},
  pages = {784}
}

@ARTICLE{Shchepetkin_McWilliams_OM05,
  author = {A. F. Shchepetkin and J. C. McWilliams},
  title = {The regional oceanic modeling system (ROMS) - a split-explicit, free-surface,
   topography-following-coordinate oceanic modelr},
  journal = OM,
  year = {2005},
  volume = {9},  number = {4},
  pages = {347--404}
}

@ARTICLE{Sacha2003,
  author = {A. F. Shchepetkin and J. C. McWilliams},
  title = {A method for computing horizontal pressure-gradient force in an oceanic
   model with a nonaligned vertical coordinate},
  journal = JGR,
  year = {2003},
  volume = {108},  number = {C3},
  pages = {3090},
  doi = {10.1029/2001JC001047},
  url = {http://dx.doi.org/10.1029/2001JC001047}
}

@ARTICLE{Shchepetkin1996,
  author = {A. F. Shchepetkin and J. J. O'Brien},
  title = {A Physically Consistent Formulation of Lateral Friction in Shallow-Water Equation Ocean Models},
  journal = MWR,
  year = {1996},
  volume = {124},  number = {6},
  pages = {1285--1300}
}

@ARTICLE{Siddorn_Furner_OM12,
  author = {J. Siddorn and R. Furner},
  title = {An analytical stretching function that combines the best attributes of geopotential and terrain-following vertical coordinates},
  journal = OM,
  year = {2012},
  pages = {submitted},
}
@ARTICLE{Simmons_al_OM04,
  author = {H. L. Simmons and S. R. Jayne and L. C. {St. Laurent} and A. J. Weaver},
  title = {Tidally driven mixing in a numerical model of the ocean general circulation},
  journal = OM,
  year = {2004},
  pages = {245--263},
}

@ARTICLE{Song_Haidvogel_JCP94,
  author = {Y. Song and D. Haidvogel},
  title = {A semi-implicit ocean circulation model using a generalized topography-following coordinate system},
  journal = JCP,
  year = {1994},
  volume = {115},  number = {1},
  pages = {228--244}
}

@ARTICLE{Song1998,
  author = {Y. T. Song},
  title = {A General Pressure Gradient Formulation for Ocean Models. Part I: Scheme Design and Diagnostic Analysis},
  journal = MWR,
  year = {1998},
  volume = {126},  number = {12},
  pages = {3213--3230}
}

@ARTICLE{SongWright1998,
  author = {Y. T. Song and D. G. Wright},
  title = {A General Pressure Gradient Formulation for Ocean Models. 
    Part II: Energy, Momentum, and Bottom Torque Consistency},
  journal = MWR,
  year = {1998},
  volume = {126},  number = {12},
  pages = {3231--3247}
}

@ARTICLE{Speer_al_Tel00,
  author = {K. Speer and E. Guilyardi and G. Madec},
  title = {Southern Ocean transformation in a coupled model with and without eddy mass fluxes},
  journal = {Tellus},
  year = {2000},
  volume = {52A},  number = {5},
  pages = {554--565}
}

@PHDTHESIS{Speich_PhD92,
  author = {S. Speich},
  title = {Etude du for\c{c}age de la circulation g\'{e}n\'{e}rale oc\'{e}anique
   par les d\'{e}troits - cas de la mer d'Alboran},
  school = {Universit\'{e} Pierre et Marie Curie, Paris, France},
  year = {1992}
}

@ARTICLE{Speich_al_GRL01,
  author = {S. Speich and B. Blanke and G. Madec},
  title = {Warm and cold water paths of an OGCM thermohaline conveyor belt},
  journal = GRL,
  year = {2001},
  volume = {28},  number = {2},
  pages = {311--314}
}

@ARTICLE{Speich_al_JPO96,
  author = {S. Speich and G. Madec and M. Cr\'{e}pon},
  title = {The circulation in the Alboran Sea - a sensitivity study},
  journal = JPO,
  year = {1996},
  volume = {26},  number = {3},
  pages = {320--340}
}

@ARTICLE{St_Laurent_Garrett_JPO02,
  author = {L.C. {St. Laurent} and C. Garrett},
  title = {The role of internal tides in mixing the deep ocean},
  journal = JPO,
  pages = {2882--2899}
}

@ARTICLE{St_Laurent_Nash_DSR04,
  author = {L.C. {St. Laurent} and J. D. Nash},
  title = {An examination of the radiative and dissipative properties of deep ocean internal tides},
  journal = DSR,
  year = {2004},
  volume = {II},  number = {51},
  pages = {3029--3042},
  doi = {10.1016/j.dsr2.2004.09.008},
  url = {http://dx.doi.org/10.1016/j.dsr2.2004.09.008}
}

@ARTICLE{St_Laurent_al_GRL02,
  author = {L.C. {St. Laurent} and H.L. Simmons and S.R. Jayne},
  title = {Estimating tidally driven mixing in the deep ocean},
  journal = GRL,
  year = {2002},
  volume = {29},
  pages = {2106},
  doi = {10.1029/2002GL015633},
  url = {http://dx.doi.org/10.1029/2002GL015633}
}

@ARTICLE{Stacey_JPO99,
  author = {M. W. Stacey},
  title = {Simulations of the wind-forced near-surface circulation in Knight Inlet: 
             A parameterization of the roughness length},
  journal = JPO,
  year = {1999},
  volume = {29},
  pages = {1363--1367},
}

@ARTICLE{Steele2001,
  author = {M. Steele and R. Morley and W. Ermold},
  title = {PHC- A Global Ocean Hydrography with a High-Quality Arctic Ocean},
  journal = JC,
  year = {2001},
  volume = {14},  number = {9},
  pages = {2079--2087},
}

@ARTICLE{Stein_Stein_Nat92,
  author = {C. A. Stein and S. Stein},
  title = {A model for the global variation in oceanic depth and heat flow with lithospheric age},
  journal = {Nature},
  year = {1992},
  volume = {359},
  pages = {123--129}
}

@ARTICLE{Takaya_al_JGR10,
  author =   {Y. Takaya and J-R. Bidlot and A. C. M. Beljaars and 
                  P. A. E. M. Janssen},
  title =        {Refinements to a prognostic scheme of sea surface skin temperature},
  journal =     JGR,
  year =     {2010},
  Volume =   {115},
  Pages =    {C06009},
  doi =   {10.1029/2009JC005985},
}

@ARTICLE{Talagrand_JAS72,
  author = {O. Talagrand},
  title = {On the damping of high-frequency motions in four-dimensional 
           assimilation of meteorological data},
  journal = JAS,
  year = {1972},
  volume = {29},
  pages = {1571-1574}
}

@ARTICLE{Thiem_Berntsen_OM06,
  author = {O. Thiem and J. Berntsen},
  title = {Internal pressure errors in sigma-coordinate ocean models due to anisotropy},
  journal = OM,
  year = {2006},
  volume = {12},  number = {1-2},
}

@ARTICLE{Timmermann_al_OM05,
  author = {R. Timmermann and H. Goosse and G. Madec and T. Fichefet and C. \'{E}the and V. Duli\`{e}re},
  title = {On the representation of high latitude processes in the ORCA-LIM global coupled sea ice-ocean model},
  journal = OM,
  year = {2005},
  volume = {8},
  pages = {175--201}
}

@ARTICLE{Tonani_al_OS08,
  author = {M. Tonani and N. Pinardi and S. Dobricic and I. Pujol and C. Fratianni},
  title = {A high-resolution free-surface model of the Mediterranean Sea},
  journal = OS,
  year = {2008},
  volume = {4},
  pages = {1--14}
}

@ARTICLE{Treguier_JGR92,
  author = {A.M. Tr\'{e}guier},
  title = {Kinetic energy analysis of an eddy resolving, primitive equation North Atlantic model},
  journal = JGR,
  year = {1992},
  volume = {97},
  pages = {687--701}
}

@ARTICLE{Treguier_al_JGR01,
  author = {A.M. Tr\'{e}guier and B. Barnier and A.P. de Miranda and J.M. Molines
    and N. Grima and M. Imbard and G. Madec and C. Messager and T. Reynaud and S. Michel},
  title = {An Eddy Permitting model of the Atlantic circulation: evaluating open boundary conditions},
  journal = JGR,
  year = {2001},
  volume = {106},
  pages = {22,115--22,129}
}

@ARTICLE{Treguier_al_DSR03,
  author = {A.-M. Tr\'{e}guier and O. Boedel and B. Barnier and G. Madec},
  title = {Agulhas eddy fluxes in a 1/6^o Atlantic model},
  journal = DSR,
  year = {2003},
  pages = {251--280}
}

@ARTICLE{Treguier1996,
  author = {A.-M. Tr\'{e}guier and J. Dukowicz and K. Bryan},
  title = {Properties of nonuniform grids used in ocean general circulation models},
  journal = JGR,
  year = {1996},
  volume = {101},
  pages = {20,877--20,881}
}

@ARTICLE{Treguier_al_OS07,
  author = {A.-M. Tr\'{e}guier and M. H. England and S. R. Rintoul and G. Madec and J. Le Sommer and J.-M. Molines},
  title = {Southern Ocean overturning across streamlines in an eddying simulation of the Antarctic Circumpolar Current},
  journal = OS,
  year = {2007},
  volume = {4},
  pages = {653--698}
}

@ARTICLE{Treguier_al_OD06,
  author = {A.-M. Tr\'{e}guier and C. Gourcuff and P. Lherminier and H. Mercier and B. Barnier 
  and G. Madec and J.-M. Molines and T. Penduff and L. Czeschel and C. Böning},
  title = {Internal and forced variability along a section between Greenland
   and Portugal in the CLIPPER Atlantic model},
  journal = OD,
  year = {2006},
  volume = {56},
  pages = {568--580},
  doi = {10.1007/s10236-006-0069-y},
  url = {http://dx.doi.org/10.1007/s10236-006-0069-y}
}

@ARTICLE{Treguier1997,
  author = {A. M. Tr\'{e}guier and I. M. Held and V. D. Larichev},
  title = {Parameterization of Quasigeostrophic Eddies in Primitive Equation Ocean Models},
  journal = JPO,
  year = {1997},
  volume = {27},  number = {4},
  pages = {567--580}
}

@ARTICLE{Tu_Tsuang_GRL05,
  title={{Cool-skin simulation by a one-column ocean model}},
  author={{C-Y}. Tu  and {B-J}. Tsuang},
  journal=GRL,
  year={2005},
  volume={32},
  pages={L22602},
  doi = {10.1029/2005GL024252},
}

@ARTICLE{Umlauf_Burchard_JMS03,
  author = {L. Umlauf and H. Burchard},
  title = {A generic length-scale equation for geophysical turbulence models},
  journal = JMS, 
  year = {2003},
  volume = {61},  number = {2},
  pages = {235--265}
}

@ARTICLE{Umlauf_Burchard_CSR05,
  author = {L. Umlauf and H. Burchard},
  title = {Second-order turbulence closure models for geophysical boundary layers. A review of recent work},
  journal = JMS, 
  year = {2005},
  volume = {25},
  pages = {795--827}
}

@BOOK{UNESCO1983,
  title = {Algorithms for computation of fundamental property of sea water},
  publisher = {Techn. Paper in Mar. Sci, 44, UNESCO},
  year = {1983},
  author = {UNESCO}
}

@TECHREPORT{OASIS2006,
  author = {S. Valcke},
  title = {OASIS3 User Guide (prism\_2-5)},
  institution = {PRISM Support Initiative Report No 3, CERFACS, Toulouse, France},
  year = {2006},
  pages = {64pp}
}

@TECHREPORT{Valcke_al_Rep00,
  author = {S. Valcke and L. Terray and A. Piacentini },
  title = {The OASIS Coupled User Guide Version 2.4},
  institution = {CERFACS},
  year = {2000},
  number = {TR/CMGC/00-10}
}

@ARTICLE{Vancoppenolle_al_OM09b,
  author = {M. Vancoppenolle and T. Fichefet and H. Goosse},
  title = {Simulating the mass balance and salinity of Arctic and Antarctic sea ice. 2. 
     Importance of sea ice salinity variations},
  journal = OM,
  year = {2009},
  volume = {27},
  pages = {54--69}
}

@ARTICLE{Vancoppenolle_al_OM09a,
  author = {M. Vancoppenolle and T. Fichefet and H. Goosse and S. Bouillon and
   G. Madec and M. A. Morales Maqueda},
  title = {Simulating the mass balance and salinity of Arctic and Antarctic
   sea ice. 1. Model description and validation},
  journal = OM,
  year = {2009},
  volume = {27},
  pages = {33--53},
  doi = {10.1016/j.ocemod.2008.10.005},
  url = {http://dx.doi.org/10.1016/j.ocemod.2008.10.005}
}

@ARTICLE{Vialard_al_JPO01,
  author = {J. Vialard and C. Menkes and J.-P. Boulanger and P. Delecluse and
   E. Guilyardi and M.J. McPhaden and G. Madec},
  title = {A Model Study of Oceanic Mechanisms Affecting Equatorial Pacific
   Sea Surface Temperature During the 1997-98 El Niño},
  journal = JPO,
  year = {2001},
  volume = {31},  number = {7},
  pages = {1649--1675}
}

@ARTICLE{Warner_al_OM05,
  author = {J. C. Warner and C. R. Sherwood and H. G. Arango and R. P. Signell},
  title = {Performance of four turbulence closure models implemented using a generic length scale method},
  journal = OM,
  year = {2005},
  volume = {8},
  pages = {81--113},
  doi = {10.1016/j.ocemod.2003.12.003},
  url = {http://dx.doi.org/j.ocemod.2003.12.003}
}

@ARTICLE{Weatherly_JMR84,
  author = {G. L. Weatherly},
  title = {An estimate of bottom frictional dissipation by Gulf Stream fluctuations},
  journal = JMR,
  year = {1984},
  volume = {42},  number = {2},
  pages = {289--301}
}

@ARTICLE{Weaver_Eby_JPO97,
  author = {A. J. Weaver and M. Eby},
  title = {On the numerical implementation of advection schemes for use in conjuction
   with various mixing parameterizations in the GFDL ocean model},
  journal = JPO,
  year = {1997},
  volume = {27}
}

@ARTICLE{Webb_al_JAOT98,
  author = {D. J. Webb and B. A. de Cuevas and C. S. Richmond},
  title = {Improved Advection Schemes for Ocean Models},
  journal = JAOT,
  year = {1998},
  volume = {15},  number = {5},
  pages = {1171--1187},
}

@ARTICLE{White_al_JCP09,
  author = {L. White and A. Adcroft and R. Hallberg},
  title = {High-order regridding-remapping schemes for continuous isopycnal
   and generalized coordinates in ocean models},
  journal = JC,
  year = {2009},
  volume = {228},
  pages = {8665--8692}
}

@ARTICLE{Wilcox_1988,
  author = {D. C. Wilcox},
  title = {Reassessment of the scale-determining equation for advanced turbulence models},
  journal = {AIAA journal},
  year = {1988},
  volume = {26},  number = {11},
  pages = {1299--1310}
}

@ARTICLE{Willebrand_al_PO01,
  author = {J. Willebrand and B. Barnier and C. Boning and C. Dieterich and P.
   D. Killworth and C. Le Provost and Y. Jia and J.-M. Molines and A. L. New},
  title = {Circulation characteristics in three eddy-permitting models of the North Atlantic},
  journal = PO,
  year = {2001},
  volume = {48},  number = {2},
  pages = {123--161}
}

@ARTICLE{Williams_al_DAO09,
  author = {P.D. Williams and E. Guilyardi and G. Madec and S. Gualdi and E. Scoccimarro},
  title = {The role of mean ocean salinity on climate},
  journal = DAO,
  year = {2010},
  volume = {49},  number = {2-3},
  pages = {108--123},
  doi = {10.1016/j.dynatmoce.2009.02.001},
  url = {http://dx.doi.org/10.1016/j.dynatmoce.2009.02.001}
}

@ARTICLE{Williams_al_GRL07,
  author = {P.D. Williams and E. Guilyardi and R. Sutton and J.M. Gregory and G. Madec},
  title = {A new feedback on climate change from the hydrological cycle},
  journal = GRL,
  year = {2007},
  volume = {34},
  pages = {L08706},
  doi = {10.1029/2007GL029275},
  url = {http://dx.doi.org/10.1029/2007GL029275}
}

@ARTICLE{Williams_al_CD06,
  author = {P.D. Williams and E. Guilyardi and R. Sutton and J.M. Gregory and G. Madec},
  title = {On the climate response of the low-latitude Pacific ocean to changes in the global freshwater cycle},
  journal = CD,
  year = {2006},
  volume = {27},
  pages = {593--611}
}

@ARTICLE{Zalesak_JCP79,
  author = {S. T. Zalesak},
  title = {Fully multidimensional flux corrected transport algorithms for fluids},
  journal = JCP,
  year = {1979},
  volume = {31}
}

@ARTICLE{Zhang_Endoh_JGR92,
  author = {Zhang, R.-H. and Endoh, M.},
  title = {A free surface general circulation model for the tropical Pacific Ocean},
  journal = JGR,
  year = {1992},
  volume = {97},
  pages = {11,237--11,255}
}

@comment{jabref-meta: groupsversion:3;}

@comment{jabref-meta: groupstree:
0 AllEntriesGroup:;
1 ExplicitGroup:El Nino\;2\;blanketal97\;;
2 ExplicitGroup:97/98 event\;0\;;
2 ExplicitGroup:Forecast\;0\;;
2 ExplicitGroup:GHG change\;0\;;
2 ExplicitGroup:in GCMs\;0\;;
2 ExplicitGroup:in MIPs\;0\;;
2 ExplicitGroup:momentum balance\;0\;;
2 ExplicitGroup:Obs analysis\;0\;;
2 ExplicitGroup:Paleo\;0\;;
2 ExplicitGroup:Previous events\;0\;;
2 ExplicitGroup:Reviews\;0\;;
2 ExplicitGroup:Simple models\;0\;Zhang_Endoh_JGR92\;;
2 ExplicitGroup:SPL, SC, mean\;0\;;
2 ExplicitGroup:Teleconnections\;0\;;
2 ExplicitGroup:Low freq\;0\;;
2 ExplicitGroup:Theory\;0\;;
2 ExplicitGroup:Energetics\;0\;;
1 ExplicitGroup:Diurnal in tropics\;0\;;
1 ExplicitGroup:Indian\;0\;;
1 ExplicitGroup:Atlantic\;0\;;
1 ExplicitGroup:MJO, IO, TIW\;2\;;
2 ExplicitGroup:Obs\;0\;;
2 ExplicitGroup:GCM\;0\;;
2 ExplicitGroup:Mechanims\;0\;;
2 ExplicitGroup:TIW\;0\;;
1 ExplicitGroup:Observations\;2\;;
2 ExplicitGroup:ERBE\;0\;;
2 ExplicitGroup:Tropical\;0\;;
2 ExplicitGroup:Global\;0\;;
2 ExplicitGroup:Clouds\;0\;;
2 ExplicitGroup:Scale interactions\;0\;;
1 ExplicitGroup:Mechanisms\;2\;;
2 ExplicitGroup:CRF\;0\;;
2 ExplicitGroup:Water vapor\;0\;;
2 ExplicitGroup:Atmos mechanisms\;0\;;
1 ExplicitGroup:GCMs\;2\;;
2 ExplicitGroup:Uncertainty\;0\;;
2 ExplicitGroup:Momentum balance\;0\;;
1 ExplicitGroup:Climate change\;0\;;
2 ExplicitGroup:IPCC AR4\;0\;;
1 ExplicitGroup:Analysis tools\;0\;;
1 KeywordGroup:EG publis\;0\;author\;guilyardi\;0\;0\;;
}