[6952] | 1 | #-Q- sxnec ################## |
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| 2 | #-Q- sxnec ## SXNEC IDRIS |
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| 3 | #-Q- sxnec ################## |
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| 4 | #-Q- sxnec #@$-r :XXX:XXX:XXX: # job name |
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| 5 | #-Q- sxnec #@$-o output_XXXXXXX.1 # outputfile name |
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| 6 | #-Q- sxnec #@$-me # sends a mail at the end of execution |
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| 7 | #-Q- sxnec #@$-eo # merge standard error and output |
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| 8 | #-Q- sxnec #@$-jo # print a short performance analysis |
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| 9 | #-Q- sxnec #@$-lT 3:00:00 # Max total CPU time |
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| 10 | #-Q- sxnec #@$-lt 2:59:00 # Max CPU time per process |
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| 11 | #-Q- sxnec #@$-lM 4Gb # Max memory |
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| 12 | #-Q- sxnec ##@$-c 4 # Max number of simultaneous procs used (here=4) |
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| 13 | #-Q- sxnec ##@$-q multi # Use more than 1 proc |
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| 14 | #-Q- aix ################## |
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| 15 | #-Q- aix ## IBM IDRIS ## |
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| 16 | #-Q- aix ################## |
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| 17 | #-Q- aix #@job_name= :XXX:XXX:XXX: |
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| 18 | #-Q- aix #@output= output_XXXXXXX.1 |
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| 19 | #-Q- aix #@error= error_XXXXXXX.1 |
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| 20 | #-Q- aix #@cpu_limit= 14200 |
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| 21 | #-Q- aix #@stack_limit= 200Mb |
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| 22 | #-Q- aix #@data_limit= 4.8Gb |
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| 23 | #-Q- aix #@notification= complete |
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| 24 | #-Q- aix #@total_tasks= 1 |
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| 25 | #-Q- aix #@job_type= parallel |
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| 26 | #-Q- aix #@queue |
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| 27 | #-Q- sx8brodie ################## |
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| 28 | #-Q- sx8brodie ## SX8NEC IDRIS ## |
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| 29 | #-Q- sx8brodie ################## |
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| 30 | #-Q- sx8brodie #PBS -N :XXX:XXX:XXX: # job name |
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| 31 | #-Q- sx8brodie #PBS -o output_XXXXXXX.1 # outputfile name |
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| 32 | #-Q- sx8brodie #PBS -j o # merge standard error and output |
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| 33 | #-Q- sx8brodie #PBS -S /usr/bin/ksh # user shell |
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| 34 | #-Q- sx8brodie #PBS -l memsz_job=4.6gb # Max memory |
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| 35 | #-Q- sx8brodie #PBS -l cputim_prc=3:30:00 # Max CPU time/prc |
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| 36 | #-Q- sx8brodie #PBS -l cputim_job=3:30:00 # Max CPU time/job |
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| 37 | #-Q- sx8brodie ##PBS -l cpunum_job=4 |
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| 38 | #-Q- sx8brodie ##PBS -q multi |
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| 39 | #-Q- sx8mercure ################## |
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| 40 | #-Q- sx8mercure ## SX8NEC CEA ## |
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| 41 | #-Q- sx8mercure ################## |
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| 42 | #-Q- sx8mercure #PBS -N :XXX:XXX:XXX: # job name |
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| 43 | #-Q- sx8mercure #PBS -o output_XXXXXXX.1 # outputfile name |
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| 44 | #-Q- sx8mercure #PBS -j o # merge standard error and output |
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| 45 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # user shell |
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| 46 | #-Q- sx8mercure #PBS -l memsz_job=4.6gb # Max memory |
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| 47 | #-Q- sx8mercure #PBS -l cputim_job=3:30:00 # Max CPU time |
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| 48 | #-Q- sx8mercure ##PBS -l cpunum_job=4 |
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| 49 | ######################################################################## |
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| 50 | ## |
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| 51 | ## Script to run a short experiment when installing the |
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| 52 | ## ORCA2_LIM configuration |
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| 53 | ## |
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| 54 | ## Rachid Benshila, OPA System Team |
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| 55 | ## |
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| 56 | ## |
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| 57 | ######################################################################### |
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| 58 | ##-- print echo of commands before and after shell interpretation |
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| 59 | date |
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| 60 | set -vx |
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| 61 | |
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| 62 | ################################# |
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| 63 | # Beginning of user modification |
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| 64 | ################################# |
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| 65 | |
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| 66 | ##-- define some directories : |
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| 67 | #- Input file storing |
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| 68 | #-Q- sxnec R_FORCING="gaya:/u/rech/eee/reee512/NEMO" |
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| 69 | #-Q- sx8brodie R_FORCING="gaya:/u/rech/eee/reee512/NEMO" |
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| 70 | #-Q- aix R_FORCING="gaya:/u/rech/eee/reee512/NEMO" |
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| 71 | #-Q- sx8mercure R_FORCING="/dmnfs10/cont003/p48ethe/FORCINGS/ORCA_R2/NEMO" |
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| 72 | #- Launching run repository |
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| 73 | #-Q- sxnec R_EXPER=${QSUB_WORKDIR:-${PWD}} |
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| 74 | #-Q- sx8brodie R_EXPER=${PBS_O_WORKDIR} |
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| 75 | #-Q- aix R_EXPER=${QSUB_WORKDIR:-${PWD}} |
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| 76 | #-Q- sx8mercure R_EXPER=${PWD} |
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| 77 | #- modipsl repository |
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| 78 | R_EXEDIR=MMMMMMM |
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| 79 | #- output files storing |
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| 80 | R_SORTIE_OCE=AAAAAAA/ORCA2_OFF_PISCES |
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| 81 | #- execution repository |
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| 82 | R_TMP=$TMPDIR |
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| 83 | |
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| 84 | ##-- define processus number : to change when running in mpp |
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| 85 | NB_PROC=1 |
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| 86 | |
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| 87 | ################################# |
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| 88 | # End of user modification |
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| 89 | ################################# |
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| 90 | |
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| 91 | #-- define a fonction to get the input tarfile |
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| 92 | #-Q- sxnec Rapatrie () { [ -f $1/$2 ] || ( rcp ${R_FORCING}/$2 $1 ; cd $1; tar xvf $2 ;) } |
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| 93 | #-Q- sx8brodie Rapatrie () { [ -f $1/$2 ] || ( rcp ${R_FORCING}/$2 $1 ; cd $1; tar xvf $2 ;) } |
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| 94 | #-Q- aix Rapatrie () { [ -f $1/$2 ] || ( rcp ${R_FORCING}/$2 $1 ; cd $1; tar xvf $2 ;) } |
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| 95 | #-Q- sx8mercure Rapatrie () { [ -f $1/$2 ] || ( cp ${R_FORCING}/$2 $1 ; cd $1; tar xvf $2 ;) } |
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| 96 | |
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| 97 | [ -d ${R_TMP} ] || mkdir ${R_TMP} |
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| 98 | cd ${R_TMP} |
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| 99 | |
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| 100 | #-- get the executable |
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| 101 | #-Q- sxnec rcp ${LOGNAME}@rhodes:${R_EXEDIR}/bin/opa opa.xx |
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| 102 | #-Q- sx8brodie rcp ${LOGNAME}@brodie:${R_EXEDIR}/bin/opa opa.xx |
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| 103 | #-Q- aix cp ${R_EXEDIR}/bin/opa opa.xx |
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| 104 | #-Q- sx8mercure cp ${R_EXEDIR}/bin/opa opa.xx |
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| 105 | chmod 777 opa.xx |
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| 106 | |
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| 107 | ## -- Copy ancillary files |
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| 108 | # |
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| 109 | |
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| 110 | #- Namelist for the configuration |
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| 111 | cp ${R_EXPER}/namelist namelist |
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| 112 | cp ${R_EXPER}/namelist_top namelist_top |
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| 113 | cp ${R_EXPER}/namelist_pisces namelist_pisces |
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| 114 | cp ${R_EXPER}/kRGB61.txt kRGB61.txt |
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| 115 | |
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| 116 | ls -alF |
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| 117 | |
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| 118 | #- Files for the configuration |
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| 119 | Rapatrie ${R_TMP} INPUTS_INIT_v3.tar |
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| 120 | Rapatrie ${R_TMP} INPUTS_DYNA_v3.tar |
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| 121 | Rapatrie ${R_TMP} INPUTS_PISCES_v3.tar |
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| 122 | |
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| 123 | ls -alF |
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| 124 | |
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| 125 | #-Q- sxnec export F_PROGINF=yes |
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| 126 | #-Q- sxnec export F_ERRCNT=5 |
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| 127 | #-Q- sx8brodie export F_PROGINF=yes |
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| 128 | #-Q- sx8brodie export F_ERRCNT=5 |
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| 129 | #-Q- sx8mercure export F_PROGINF=yes |
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| 130 | #-Q- sx8mercure export F_ERRCNT=5 |
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| 131 | |
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| 132 | #-Q- sxnec #- To be use for a mpp run |
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| 133 | #-Q- sxnec #mpirun -np ${NB_PROC} ./opa.xx |
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| 134 | #-Q- sx8brodie #- To be use for a mpp run |
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| 135 | #-Q- sx8brodie #mpirun -np ${NB_PROC} ./opa.xx |
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| 136 | #-Q- sx8mercure #- To be use for a mpp run |
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| 137 | #-Q- sx8mercure #mpirun -np ${NB_PROC} ./opa.xx |
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| 138 | |
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| 139 | ./opa.xx |
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| 140 | |
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| 141 | ## -- Save output files |
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| 142 | ls -alF |
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| 143 | #- to copy on a storage machine |
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| 144 | #-Q- sxnec DPUT=mfput |
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| 145 | #-Q- sx8brodie DPUT=mfput |
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| 146 | #-Q- aix DPUT=mfput |
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| 147 | #-Q- sx8mercure DPUT=cp |
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| 148 | #-Q- sx8mercure [ -d ${R_SORTIE_OCE} ] || mkdir -p ${R_SORTIE_OCE} |
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| 149 | |
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| 150 | #- Save ocean output files |
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| 151 | $DPUT *ocean.output ${R_SORTIE_OCE}/. |
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| 152 | $DPUT *solver.stat ${R_SORTIE_OCE}/. |
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| 153 | [ -f *mpp.output* ] && $DPUT *mpp.output* ${R_SORTIE_OCE}/. |
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| 154 | for file_netcdf in *_diad_T*.nc *_ptrc_T*.nc |
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| 155 | do |
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| 156 | $DPUT ${file_netcdf} ${R_SORTIE_OCE}/${file_netcdf} |
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| 157 | done |
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| 158 | # |
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| 159 | #- Save restart files |
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| 160 | for restart in *restart* |
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| 161 | do |
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| 162 | $DPUT ${restart} ${R_SORTIE_OCE}/${restart} |
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| 163 | done |
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| 164 | # |
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| 165 | #- Save ftrace file |
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| 166 | [ -f ftrace.out* ] && $DPUT ftrace.out* ${R_SORTIE_OCE}/. |
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