1 | !---------------------------------------------------------------------- |
---|
2 | ! NEMO system team, System and Interface for oceanic RElocable Nesting |
---|
3 | !---------------------------------------------------------------------- |
---|
4 | ! |
---|
5 | ! |
---|
6 | ! PROGRAM: create_restart |
---|
7 | ! |
---|
8 | ! DESCRIPTION: |
---|
9 | !> @file |
---|
10 | !> @brief |
---|
11 | !> This program create restart file. |
---|
12 | !> |
---|
13 | !> @details |
---|
14 | !> @section sec1 method |
---|
15 | !> Variables could be extracted from fine grid file, interpolated from coarse |
---|
16 | !> grid file or restart file, or manually written.<br/> |
---|
17 | !> Then they are split over new decomposition. |
---|
18 | !> @note |
---|
19 | !> method could be different for each variable. |
---|
20 | !> |
---|
21 | !> @section sec2 how to |
---|
22 | !> to create restart file:<br/> |
---|
23 | !> @code{.sh} |
---|
24 | !> ./SIREN/bin/create_restart create_restart.nam |
---|
25 | !> @endcode |
---|
26 | !> |
---|
27 | !> create_restart.nam comprise 9 namelists:<br/> |
---|
28 | !> - logger namelist (namlog) |
---|
29 | !> - config namelist (namcfg) |
---|
30 | !> - coarse grid namelist (namcrs) |
---|
31 | !> - fine grid namelist (namfin) |
---|
32 | !> - vertical grid namelist (namzgr) |
---|
33 | !> - partial step namelist (namzps) |
---|
34 | !> - variable namelist (namvar) |
---|
35 | !> - nesting namelist (namnst) |
---|
36 | !> - output namelist (namout) |
---|
37 | !> |
---|
38 | !> @note |
---|
39 | !> All namelists have to be in file create_restart.nam |
---|
40 | !> however variables of those namelists are all optional. |
---|
41 | !> |
---|
42 | !> * _logger namelist (namlog)_:<br/> |
---|
43 | !> - cn_logfile : log filename |
---|
44 | !> - cn_verbosity : verbosity ('trace','debug','info', |
---|
45 | !> 'warning','error','fatal') |
---|
46 | !> - in_maxerror : maximum number of error allowed |
---|
47 | !> |
---|
48 | !> * _config namelist (namcfg)_:<br/> |
---|
49 | !> - cn_varcfg : variable configuration file |
---|
50 | !> (see ./SIREN/cfg/variable.cfg) |
---|
51 | !> |
---|
52 | !> * _coarse grid namelist (namcrs):<br/> |
---|
53 | !> - cn_coord0 : coordinate file |
---|
54 | !> - in_perio0 : NEMO periodicity index (see Model Boundary Condition in |
---|
55 | !> [NEMO documentation](http://www.nemo-ocean.eu/About-NEMO/Reference-manuals)) |
---|
56 | !> |
---|
57 | !> * _fine grid namelist (namfin)_:<br/> |
---|
58 | !> - cn_coord1 : coordinate file |
---|
59 | !> - cn_bathy1 : bathymetry file |
---|
60 | !> - in_perio1 : NEMO periodicity index |
---|
61 | !> - in_extrap : number of land point to be extrapolated |
---|
62 | !> before writing file |
---|
63 | !> |
---|
64 | !> * _vertical grid namelist (namzgr)_:<br/> |
---|
65 | !> - dn_pp_to_be_computed : |
---|
66 | !> - dn_ppsur : |
---|
67 | !> - dn_ppa0 : |
---|
68 | !> - dn_ppa1 : |
---|
69 | !> - dn_ppa2 : |
---|
70 | !> - dn_ppkth : |
---|
71 | !> - dn_ppkth2 : |
---|
72 | !> - dn_ppacr : |
---|
73 | !> - dn_ppacr2 : |
---|
74 | !> - dn_ppdzmin : |
---|
75 | !> - dn_pphmax : |
---|
76 | !> - in_nlevel : number of vertical level |
---|
77 | !> |
---|
78 | !> * _partial step namelist (namzps)_:<br/> |
---|
79 | !> - dn_e3zps_min : |
---|
80 | !> - dn_e3zps_rat : |
---|
81 | !> |
---|
82 | !> * _variable namelist (namvar)_:<br/> |
---|
83 | !> - cn_varinfo : list of variable and extra information about request(s) |
---|
84 | !> to be used.<br/> |
---|
85 | !> each elements of *cn_varinfo* is a string character.<br/> |
---|
86 | !> it is composed of the variable name follow by ':', |
---|
87 | !> then request(s) to be used on this variable.<br/> |
---|
88 | !> request could be: |
---|
89 | !> - interpolation method |
---|
90 | !> - extrapolation method |
---|
91 | !> - filter method |
---|
92 | !> - > minimum value |
---|
93 | !> - < maximum value |
---|
94 | !> |
---|
95 | !> requests must be separated by ';'.<br/> |
---|
96 | !> order of requests does not matter.<br/> |
---|
97 | !> |
---|
98 | !> informations about available method could be find in @ref interp, |
---|
99 | !> @ref extrap and @ref filter.<br/> |
---|
100 | !> Example: 'votemper: linear; hann; dist_weight','vosaline: cubic' |
---|
101 | !> @note |
---|
102 | !> If you do not specify a method which is required, |
---|
103 | !> default one is apply. |
---|
104 | !> - cn_varfile : list of variable, and corresponding file<br/> |
---|
105 | !> *cn_varfile* is the path and filename of the file where find |
---|
106 | !> variable.<br/> |
---|
107 | !> @note |
---|
108 | !> *cn_varfile* could be a matrix of value, if you want to filled |
---|
109 | !> manually variable value.<br/> |
---|
110 | !> the variable array of value is split into equal subdomain.<br/> |
---|
111 | !> Each subdomain is filled with the corresponding value |
---|
112 | !> of the matrix.<br/> |
---|
113 | !> separators used to defined matrix are: |
---|
114 | !> - ',' for line |
---|
115 | !> - '/' for row |
---|
116 | !> - '\' for level<br/> |
---|
117 | !> Example:<br/> |
---|
118 | !> 3,2,3/1,4,5 => @f$ \left( \begin{array}{ccc} |
---|
119 | !> 3 & 2 & 3 \\ |
---|
120 | !> 1 & 4 & 5 \end{array} \right) @f$ |
---|
121 | !> |
---|
122 | !> Examples: |
---|
123 | !> - 'votemper:gridT.nc', 'vozocrtx:gridU.nc' |
---|
124 | !> - 'votemper:10\25', 'vozocrtx:gridU.nc' |
---|
125 | !> |
---|
126 | !> to get all variable from one file: |
---|
127 | !> - 'all:restart.dimg' |
---|
128 | !> |
---|
129 | !> * _nesting namelist (namnst)_:<br/> |
---|
130 | !> - in_rhoi : refinement factor in i-direction |
---|
131 | !> - in_rhoj : refinement factor in j-direction |
---|
132 | !> @note |
---|
133 | !> coarse grid indices will be deduced from fine grid |
---|
134 | !> coordinate file. |
---|
135 | !> |
---|
136 | !> * _output namelist (namout)_:<br/> |
---|
137 | !> - cn_fileout : output file |
---|
138 | !> - in_nproc : total number of processor to be used |
---|
139 | !> - in_niproc : i-direction number of processor |
---|
140 | !> - in_njproc : j-direction numebr of processor |
---|
141 | !> - cn_type : output format ('dimg', 'cdf') |
---|
142 | !> |
---|
143 | !> @author J.Paul |
---|
144 | ! REVISION HISTORY: |
---|
145 | !> @date November, 2013 - Initial Version |
---|
146 | !> @date September, 2014 |
---|
147 | !> - add header for user |
---|
148 | !> - offset computed considering grid point |
---|
149 | !> - add attributes in output variable |
---|
150 | !> |
---|
151 | !> @note Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
---|
152 | !---------------------------------------------------------------------- |
---|
153 | PROGRAM create_restart |
---|
154 | |
---|
155 | USE global ! global variable |
---|
156 | USE kind ! F90 kind parameter |
---|
157 | USE logger ! log file manager |
---|
158 | USE fct ! basic useful function |
---|
159 | USE date ! date manager |
---|
160 | USE att ! attribute manager |
---|
161 | USE dim ! dimension manager |
---|
162 | USE var ! variable manager |
---|
163 | USE file ! file manager |
---|
164 | USE multi ! multi file manager |
---|
165 | USE iom ! I/O manager |
---|
166 | USE grid ! grid manager |
---|
167 | USE vgrid ! vertical grid manager |
---|
168 | USE extrap ! extrapolation manager |
---|
169 | USE interp ! interpolation manager |
---|
170 | USE filter ! filter manager |
---|
171 | USE mpp ! MPP manager |
---|
172 | USE dom ! domain manager |
---|
173 | USE iom_mpp ! MPP I/O manager |
---|
174 | USE iom_dom ! DOM I/O manager |
---|
175 | |
---|
176 | IMPLICIT NONE |
---|
177 | |
---|
178 | |
---|
179 | ! local variable |
---|
180 | CHARACTER(LEN=lc) :: cl_namelist |
---|
181 | CHARACTER(LEN=lc) :: cl_date |
---|
182 | CHARACTER(LEN=lc) :: cl_name |
---|
183 | CHARACTER(LEN=lc) :: cl_data |
---|
184 | CHARACTER(LEN=lc) :: cl_fileout |
---|
185 | |
---|
186 | INTEGER(i4) :: il_narg |
---|
187 | INTEGER(i4) :: il_status |
---|
188 | INTEGER(i4) :: il_fileid |
---|
189 | INTEGER(i4) :: il_nvar |
---|
190 | INTEGER(i4) :: il_attid |
---|
191 | INTEGER(i4) :: il_imin1 |
---|
192 | INTEGER(i4) :: il_imax1 |
---|
193 | INTEGER(i4) :: il_jmin1 |
---|
194 | INTEGER(i4) :: il_jmax1 |
---|
195 | INTEGER(i4) :: il_imin0 |
---|
196 | INTEGER(i4) :: il_imax0 |
---|
197 | INTEGER(i4) :: il_jmin0 |
---|
198 | INTEGER(i4) :: il_jmax0 |
---|
199 | INTEGER(i4) :: il_index |
---|
200 | INTEGER(i4) , DIMENSION(ip_maxdim) :: il_rho |
---|
201 | INTEGER(i4) , DIMENSION(2,2) :: il_xghost |
---|
202 | INTEGER(i4) , DIMENSION(2,2) :: il_offset |
---|
203 | INTEGER(i4) , DIMENSION(2,2) :: il_ind |
---|
204 | |
---|
205 | LOGICAL :: ll_exist |
---|
206 | |
---|
207 | TYPE(TDOM) :: tl_dom1 |
---|
208 | TYPE(TDOM) :: tl_dom0 |
---|
209 | |
---|
210 | TYPE(TATT) :: tl_att |
---|
211 | |
---|
212 | TYPE(TVAR) :: tl_depth |
---|
213 | TYPE(TVAR) :: tl_time |
---|
214 | TYPE(TVAR) :: tl_lon |
---|
215 | TYPE(TVAR) :: tl_lat |
---|
216 | TYPE(TVAR) , DIMENSION(:) , ALLOCATABLE :: tl_var |
---|
217 | TYPE(TVAR) , DIMENSION(:) , ALLOCATABLE :: tl_level |
---|
218 | |
---|
219 | TYPE(TDIM) , DIMENSION(ip_maxdim) :: tl_dim |
---|
220 | |
---|
221 | TYPE(TMPP) :: tl_coord0 |
---|
222 | TYPE(TMPP) :: tl_coord1 |
---|
223 | TYPE(TMPP) :: tl_bathy1 |
---|
224 | TYPE(TMPP) :: tl_mpp |
---|
225 | TYPE(TMPP) :: tl_mppout |
---|
226 | |
---|
227 | TYPE(TMULTI) :: tl_multi |
---|
228 | |
---|
229 | ! loop indices |
---|
230 | INTEGER(i4) :: ji |
---|
231 | INTEGER(i4) :: jj |
---|
232 | INTEGER(i4) :: jvar |
---|
233 | |
---|
234 | ! namelist variable |
---|
235 | ! namlog |
---|
236 | CHARACTER(LEN=lc) :: cn_logfile = 'create_restart.log' |
---|
237 | CHARACTER(LEN=lc) :: cn_verbosity = 'warning' |
---|
238 | INTEGER(i4) :: in_maxerror = 5 |
---|
239 | |
---|
240 | ! namcfg |
---|
241 | CHARACTER(LEN=lc) :: cn_varcfg = 'variable.cfg' |
---|
242 | |
---|
243 | ! namcrs |
---|
244 | CHARACTER(LEN=lc) :: cn_coord0 = '' |
---|
245 | INTEGER(i4) :: in_perio0 = -1 |
---|
246 | |
---|
247 | ! namfin |
---|
248 | CHARACTER(LEN=lc) :: cn_coord1 = '' |
---|
249 | CHARACTER(LEN=lc) :: cn_bathy1 = '' |
---|
250 | INTEGER(i4) :: in_perio1 = -1 |
---|
251 | INTEGER(i4) :: in_extrap = 0 |
---|
252 | |
---|
253 | !namzgr |
---|
254 | REAL(dp) :: dn_pp_to_be_computed = 0._dp |
---|
255 | REAL(dp) :: dn_ppsur = -3958.951371276829_dp |
---|
256 | REAL(dp) :: dn_ppa0 = 103.9530096000000_dp |
---|
257 | REAL(dp) :: dn_ppa1 = 2.4159512690000_dp |
---|
258 | REAL(dp) :: dn_ppa2 = 100.7609285000000_dp |
---|
259 | REAL(dp) :: dn_ppkth = 15.3510137000000_dp |
---|
260 | REAL(dp) :: dn_ppkth2 = 48.0298937200000_dp |
---|
261 | REAL(dp) :: dn_ppacr = 7.0000000000000_dp |
---|
262 | REAL(dp) :: dn_ppacr2 = 13.000000000000_dp |
---|
263 | REAL(dp) :: dn_ppdzmin = 6._dp |
---|
264 | REAL(dp) :: dn_pphmax = 5750._dp |
---|
265 | INTEGER(i4) :: in_nlevel = 75 |
---|
266 | |
---|
267 | !namzps |
---|
268 | REAL(dp) :: dn_e3zps_min = 25._dp |
---|
269 | REAL(dp) :: dn_e3zps_rat = 0.2_dp |
---|
270 | |
---|
271 | ! namvar |
---|
272 | CHARACTER(LEN=lc), DIMENSION(ip_maxvar) :: cn_varinfo = '' |
---|
273 | CHARACTER(LEN=lc), DIMENSION(ip_maxvar) :: cn_varfile = '' |
---|
274 | |
---|
275 | ! namnst |
---|
276 | INTEGER(i4) :: in_rhoi = 0 |
---|
277 | INTEGER(i4) :: in_rhoj = 0 |
---|
278 | |
---|
279 | ! namout |
---|
280 | CHARACTER(LEN=lc) :: cn_fileout = 'restart.nc' |
---|
281 | INTEGER(i4) :: in_nproc = 0 |
---|
282 | INTEGER(i4) :: in_niproc = 0 |
---|
283 | INTEGER(i4) :: in_njproc = 0 |
---|
284 | CHARACTER(LEN=lc) :: cn_type = '' |
---|
285 | |
---|
286 | !------------------------------------------------------------------- |
---|
287 | |
---|
288 | NAMELIST /namlog/ & !< logger namelist |
---|
289 | & cn_logfile, & !< log file |
---|
290 | & cn_verbosity, & !< log verbosity |
---|
291 | & in_maxerror !< logger maximum error |
---|
292 | |
---|
293 | NAMELIST /namcfg/ & !< configuration namelist |
---|
294 | & cn_varcfg !< variable configuration file |
---|
295 | |
---|
296 | NAMELIST /namcrs/ & !< coarse grid namelist |
---|
297 | & cn_coord0, & !< coordinate file |
---|
298 | & in_perio0 !< periodicity index |
---|
299 | |
---|
300 | NAMELIST /namfin/ & !< fine grid namelist |
---|
301 | & cn_coord1, & !< coordinate file |
---|
302 | & cn_bathy1, & !< bathymetry file |
---|
303 | & in_perio1, & !< periodicity index |
---|
304 | & in_extrap |
---|
305 | |
---|
306 | NAMELIST /namzgr/ & |
---|
307 | & dn_pp_to_be_computed, & |
---|
308 | & dn_ppsur, & |
---|
309 | & dn_ppa0, & |
---|
310 | & dn_ppa1, & |
---|
311 | & dn_ppa2, & |
---|
312 | & dn_ppkth, & |
---|
313 | & dn_ppkth2, & |
---|
314 | & dn_ppacr, & |
---|
315 | & dn_ppacr2, & |
---|
316 | & dn_ppdzmin, & |
---|
317 | & dn_pphmax, & |
---|
318 | & in_nlevel !< number of vertical level |
---|
319 | |
---|
320 | NAMELIST /namzps/ & |
---|
321 | & dn_e3zps_min, & |
---|
322 | & dn_e3zps_rat |
---|
323 | |
---|
324 | NAMELIST /namvar/ & !< variable namelist |
---|
325 | & cn_varinfo, & !< list of variable and interpolation method to be used. |
---|
326 | & cn_varfile !< list of variable file |
---|
327 | |
---|
328 | NAMELIST /namnst/ & !< nesting namelist |
---|
329 | & in_rhoi, & !< refinement factor in i-direction |
---|
330 | & in_rhoj !< refinement factor in j-direction |
---|
331 | |
---|
332 | NAMELIST /namout/ & !< output namlist |
---|
333 | & cn_fileout, & !< fine grid bathymetry file |
---|
334 | & in_nproc, & !< number of processor to be used |
---|
335 | & in_niproc, & !< i-direction number of processor |
---|
336 | & in_njproc, & !< j-direction numebr of processor |
---|
337 | & cn_type !< output type format (dimg, cdf) |
---|
338 | !------------------------------------------------------------------- |
---|
339 | |
---|
340 | ! namelist |
---|
341 | ! get namelist |
---|
342 | il_narg=COMMAND_ARGUMENT_COUNT() !f03 intrinsec |
---|
343 | IF( il_narg/=1 )THEN |
---|
344 | PRINT *,"ERROR in create_restart: need a namelist" |
---|
345 | STOP |
---|
346 | ELSE |
---|
347 | CALL GET_COMMAND_ARGUMENT(1,cl_namelist) !f03 intrinsec |
---|
348 | ENDIF |
---|
349 | |
---|
350 | ! read namelist |
---|
351 | INQUIRE(FILE=TRIM(cl_namelist), EXIST=ll_exist) |
---|
352 | IF( ll_exist )THEN |
---|
353 | |
---|
354 | il_fileid=fct_getunit() |
---|
355 | |
---|
356 | OPEN( il_fileid, FILE=TRIM(cl_namelist), & |
---|
357 | & FORM='FORMATTED', & |
---|
358 | & ACCESS='SEQUENTIAL', & |
---|
359 | & STATUS='OLD', & |
---|
360 | & ACTION='READ', & |
---|
361 | & IOSTAT=il_status) |
---|
362 | CALL fct_err(il_status) |
---|
363 | IF( il_status /= 0 )THEN |
---|
364 | PRINT *,"ERROR in create_restart: error opening "//TRIM(cl_namelist) |
---|
365 | STOP |
---|
366 | ENDIF |
---|
367 | |
---|
368 | READ( il_fileid, NML = namlog ) |
---|
369 | ! define log file |
---|
370 | CALL logger_open(TRIM(cn_logfile),TRIM(cn_verbosity),in_maxerror) |
---|
371 | CALL logger_header() |
---|
372 | |
---|
373 | READ( il_fileid, NML = namcfg ) |
---|
374 | ! get variable extra information |
---|
375 | CALL var_def_extra(TRIM(cn_varcfg)) |
---|
376 | |
---|
377 | READ( il_fileid, NML = namcrs ) |
---|
378 | READ( il_fileid, NML = namfin ) |
---|
379 | READ( il_fileid, NML = namzgr ) |
---|
380 | READ( il_fileid, NML = namvar ) |
---|
381 | ! add user change in extra information |
---|
382 | CALL var_chg_extra(cn_varinfo) |
---|
383 | ! match variable with file |
---|
384 | tl_multi=multi_init(cn_varfile) |
---|
385 | |
---|
386 | READ( il_fileid, NML = namnst ) |
---|
387 | READ( il_fileid, NML = namout ) |
---|
388 | |
---|
389 | CLOSE( il_fileid, IOSTAT=il_status ) |
---|
390 | CALL fct_err(il_status) |
---|
391 | IF( il_status /= 0 )THEN |
---|
392 | CALL logger_error("CREATE RESTART: closing "//TRIM(cl_namelist)) |
---|
393 | ENDIF |
---|
394 | |
---|
395 | ELSE |
---|
396 | |
---|
397 | PRINT *,"ERROR in create_restart: can't find "//TRIM(cl_namelist) |
---|
398 | STOP |
---|
399 | |
---|
400 | ENDIF |
---|
401 | |
---|
402 | ! |
---|
403 | CALL multi_print(tl_multi) |
---|
404 | IF( tl_multi%i_nvar <= 0 )THEN |
---|
405 | CALL logger_fatal("CREATE RESTART: no variable to be used."//& |
---|
406 | & " check namelist.") |
---|
407 | ENDIF |
---|
408 | |
---|
409 | ! open files |
---|
410 | IF( cn_coord0 /= '' )THEN |
---|
411 | tl_coord0=mpp_init( file_init(TRIM(cn_coord0)), id_perio=in_perio0) |
---|
412 | CALL grid_get_info(tl_coord0) |
---|
413 | ELSE |
---|
414 | CALL logger_fatal("CREATE RESTART: no coarse grid coordinate found. "//& |
---|
415 | & "check namelist") |
---|
416 | ENDIF |
---|
417 | |
---|
418 | IF( TRIM(cn_coord1) /= '' )THEN |
---|
419 | tl_coord1=mpp_init( file_init(TRIM(cn_coord1)), id_perio=in_perio1) |
---|
420 | CALL grid_get_info(tl_coord1) |
---|
421 | ELSE |
---|
422 | CALL logger_fatal("CREATE RESTART: no fine grid coordinate found. "//& |
---|
423 | & "check namelist") |
---|
424 | ENDIF |
---|
425 | |
---|
426 | IF( TRIM(cn_bathy1) /= '' )THEN |
---|
427 | tl_bathy1=mpp_init( file_init(TRIM(cn_bathy1)), id_perio=in_perio1) |
---|
428 | CALL grid_get_info(tl_bathy1) |
---|
429 | ELSE |
---|
430 | CALL logger_fatal("CREATE RESTART: no fine grid bathymetry found. "//& |
---|
431 | & "check namelist") |
---|
432 | ENDIF |
---|
433 | |
---|
434 | ! check |
---|
435 | ! check output file do not already exist |
---|
436 | cl_fileout=file_rename(cn_fileout,1) |
---|
437 | INQUIRE(FILE=TRIM(cl_fileout), EXIST=ll_exist) |
---|
438 | IF( ll_exist )THEN |
---|
439 | CALL logger_fatal("CREATE RESTART: output file "//TRIM(cl_fileout)//& |
---|
440 | & " already exist.") |
---|
441 | ENDIF |
---|
442 | |
---|
443 | ! check refinement factor |
---|
444 | il_rho(:)=1 |
---|
445 | IF( in_rhoi < 1 .OR. in_rhoj < 1 )THEN |
---|
446 | CALL logger_error("CREATE RESTART: invalid refinement factor."//& |
---|
447 | & " check namelist "//TRIM(cl_namelist)) |
---|
448 | ELSE |
---|
449 | il_rho(jp_I)=in_rhoi |
---|
450 | il_rho(jp_J)=in_rhoj |
---|
451 | ENDIF |
---|
452 | |
---|
453 | ! check domain indices |
---|
454 | ! compute coarse grid indices around fine grid |
---|
455 | il_ind(:,:)=grid_get_coarse_index(tl_coord0, tl_coord1, & |
---|
456 | & id_rho=il_rho(:)) |
---|
457 | |
---|
458 | il_imin0=il_ind(1,1) ; il_imax0=il_ind(1,2) |
---|
459 | il_jmin0=il_ind(2,1) ; il_jmax0=il_ind(2,2) |
---|
460 | |
---|
461 | ! check domain validity |
---|
462 | CALL grid_check_dom(tl_coord0, il_imin0, il_imax0, il_jmin0, il_jmax0) |
---|
463 | |
---|
464 | !3-2-4 check coincidence between coarse and fine grid |
---|
465 | CALL grid_check_coincidence( tl_coord0, tl_coord1, & |
---|
466 | & il_imin0, il_imax0, & |
---|
467 | & il_jmin0, il_jmax0, & |
---|
468 | & il_rho(:) ) |
---|
469 | |
---|
470 | ! compute level |
---|
471 | ALLOCATE(tl_level(ip_npoint)) |
---|
472 | tl_level(:)=vgrid_get_level(tl_bathy1, cl_namelist ) |
---|
473 | |
---|
474 | ! remove ghost cell |
---|
475 | il_xghost(:,:)=grid_get_ghost(tl_bathy1) |
---|
476 | DO ji=1,ip_npoint |
---|
477 | CALL grid_del_ghost(tl_level(ji), il_xghost(:,:)) |
---|
478 | ENDDO |
---|
479 | |
---|
480 | ! clean |
---|
481 | CALL mpp_clean(tl_bathy1) |
---|
482 | |
---|
483 | ! work on variables |
---|
484 | IF( .NOT. ASSOCIATED(tl_multi%t_mpp) )THEN |
---|
485 | CALL logger_error("CREATE RESTART: no file to work on. "//& |
---|
486 | & "check cn_varfile in namelist.") |
---|
487 | ELSE |
---|
488 | ALLOCATE( tl_var( tl_multi%i_nvar ) ) |
---|
489 | |
---|
490 | jvar=0 |
---|
491 | ! for each file |
---|
492 | DO ji=1,tl_multi%i_nmpp |
---|
493 | WRITE(cl_data,'(a,i2.2)') 'data-',jvar+1 |
---|
494 | |
---|
495 | IF( .NOT. ASSOCIATED(tl_multi%t_mpp(ji)%t_proc(1)%t_var) )THEN |
---|
496 | |
---|
497 | CALL logger_error("CREATE RESTART: no variable to work on for "//& |
---|
498 | & "mpp "//TRIM(tl_multi%t_mpp(ji)%c_name)//& |
---|
499 | & ". check cn_varfile in namelist.") |
---|
500 | |
---|
501 | ELSEIF( TRIM(tl_multi%t_mpp(ji)%c_name) == TRIM(cl_data) )THEN |
---|
502 | !- use input matrix to fill variable |
---|
503 | |
---|
504 | WRITE(*,'(a)') "work on data" |
---|
505 | ! for each variable initialise from matrix |
---|
506 | DO jj=1,tl_multi%t_mpp(ji)%t_proc(1)%i_nvar |
---|
507 | |
---|
508 | jvar=jvar+1 |
---|
509 | |
---|
510 | WRITE(*,'(2x,a,a)') "work on variable "//& |
---|
511 | & TRIM(tl_multi%t_mpp(ji)%t_proc(1)%t_var(jj)%c_name) |
---|
512 | |
---|
513 | ! fill value with matrix data |
---|
514 | tl_var(jvar) = create_restart_matrix( & |
---|
515 | & tl_multi%t_mpp(ji)%t_proc(1)%t_var(jj), tl_coord1, & |
---|
516 | & in_nlevel, tl_level(:) ) |
---|
517 | |
---|
518 | ENDDO |
---|
519 | !- end of use input matrix to fill variable |
---|
520 | ELSE |
---|
521 | !- use mpp file to fill variable |
---|
522 | |
---|
523 | WRITE(*,'(a)') "work on file "//TRIM(tl_multi%t_mpp(ji)%c_name) |
---|
524 | ! |
---|
525 | tl_mpp=mpp_init( file_init(TRIM(tl_multi%t_mpp(ji)%t_proc(1)%c_name)) ) |
---|
526 | CALL grid_get_info(tl_mpp) |
---|
527 | |
---|
528 | ! check vertical dimension |
---|
529 | IF( tl_mpp%t_dim(jp_K)%l_use .AND. & |
---|
530 | & tl_mpp%t_dim(jp_K)%i_len /= in_nlevel )THEN |
---|
531 | CALL logger_error("CREATE RESTART: dimension in file "//& |
---|
532 | & TRIM(tl_mpp%c_name)//" not agree with namelist in_nlevel ") |
---|
533 | ENDIF |
---|
534 | |
---|
535 | ! open mpp file |
---|
536 | CALL iom_mpp_open(tl_mpp) |
---|
537 | |
---|
538 | ! get or check depth value |
---|
539 | CALL create_restart_check_depth( tl_mpp, tl_depth ) |
---|
540 | |
---|
541 | ! get or check time value |
---|
542 | CALL create_restart_check_time( tl_mpp, tl_time ) |
---|
543 | |
---|
544 | ! close mpp file |
---|
545 | CALL iom_mpp_close(tl_mpp) |
---|
546 | |
---|
547 | IF( ANY( tl_mpp%t_dim(1:2)%i_len /= & |
---|
548 | & tl_coord0%t_dim(1:2)%i_len) )THEN |
---|
549 | !!! extract value from fine grid |
---|
550 | |
---|
551 | IF( ANY( tl_mpp%t_dim(1:2)%i_len <= & |
---|
552 | & tl_coord1%t_dim(1:2)%i_len) )THEN |
---|
553 | CALL logger_fatal("CREATE RESTART: dimension in file "//& |
---|
554 | & TRIM(tl_mpp%c_name)//" smaller than those in fine"//& |
---|
555 | & " grid coordinates.") |
---|
556 | ENDIF |
---|
557 | |
---|
558 | ! compute domain on fine grid |
---|
559 | il_ind(:,:)=grid_get_coarse_index(tl_mpp, tl_coord1 ) |
---|
560 | |
---|
561 | il_imin1=il_ind(1,1) ; il_imax1=il_ind(1,2) |
---|
562 | il_jmin1=il_ind(2,1) ; il_jmax1=il_ind(2,2) |
---|
563 | |
---|
564 | !- check grid coincidence |
---|
565 | CALL grid_check_coincidence( tl_mpp, tl_coord1, & |
---|
566 | & il_imin1, il_imax1, & |
---|
567 | & il_jmin1, il_jmax1, & |
---|
568 | & il_rho(:) ) |
---|
569 | |
---|
570 | ! compute domain |
---|
571 | tl_dom1=dom_init(tl_mpp, & |
---|
572 | & il_imin1, il_imax1, & |
---|
573 | & il_jmin1, il_jmax1) |
---|
574 | |
---|
575 | ! open mpp files |
---|
576 | CALL iom_dom_open(tl_mpp, tl_dom1) |
---|
577 | |
---|
578 | ! for each variable of this file |
---|
579 | DO jj=1,tl_multi%t_mpp(ji)%t_proc(1)%i_nvar |
---|
580 | |
---|
581 | WRITE(*,'(2x,a,a)') "work on variable "//& |
---|
582 | & TRIM(tl_multi%t_mpp(ji)%t_proc(1)%t_var(jj)%c_name) |
---|
583 | |
---|
584 | jvar=jvar+1 |
---|
585 | cl_name=tl_multi%t_mpp(ji)%t_proc(1)%t_var(jj)%c_name |
---|
586 | ! read variable over domain |
---|
587 | tl_var(jvar)=iom_dom_read_var(tl_mpp, TRIM(cl_name), tl_dom1) |
---|
588 | |
---|
589 | ! add attribute to variable |
---|
590 | tl_att=att_init('src_file',TRIM(fct_basename(tl_mpp%c_name))) |
---|
591 | CALL var_move_att(tl_var(jvar), tl_att) |
---|
592 | |
---|
593 | tl_att=att_init('src_i_indices',(/il_imin0, il_imax0/)) |
---|
594 | CALL var_move_att(tl_var(jvar), tl_att) |
---|
595 | |
---|
596 | tl_att=att_init('src_j_indices',(/il_jmin0, il_jmax0/)) |
---|
597 | CALL var_move_att(tl_var(jvar), tl_att) |
---|
598 | |
---|
599 | ! clean structure |
---|
600 | CALL att_clean(tl_att) |
---|
601 | |
---|
602 | ! use mask |
---|
603 | CALL create_restart_mask(tl_var(jvar), tl_level(:)) |
---|
604 | |
---|
605 | ! add ghost cell |
---|
606 | CALL grid_add_ghost( tl_var(jvar), tl_dom1%i_ghost(:,:) ) |
---|
607 | |
---|
608 | ENDDO |
---|
609 | |
---|
610 | ! close mpp file |
---|
611 | CALL iom_dom_close(tl_mpp) |
---|
612 | |
---|
613 | ! clean structure |
---|
614 | CALL mpp_clean(tl_mpp) |
---|
615 | CALL dom_clean(tl_dom1) |
---|
616 | |
---|
617 | ELSE |
---|
618 | !!! get value from coarse grid |
---|
619 | |
---|
620 | ! compute domain on coarse grid |
---|
621 | tl_dom0=dom_init(tl_mpp, & |
---|
622 | & il_imin0, il_imax0, & |
---|
623 | & il_jmin0, il_jmax0 ) |
---|
624 | |
---|
625 | ! add extra band (if possible) to compute interpolation |
---|
626 | CALL dom_add_extra(tl_dom0) |
---|
627 | |
---|
628 | ! open mpp files |
---|
629 | CALL iom_dom_open(tl_mpp, tl_dom0) |
---|
630 | ! for each variable of this file |
---|
631 | DO jj=1,tl_multi%t_mpp(ji)%t_proc(1)%i_nvar |
---|
632 | |
---|
633 | WRITE(*,'(2x,a,a)') "work on variable "//& |
---|
634 | & TRIM(tl_multi%t_mpp(ji)%t_proc(1)%t_var(jj)%c_name) |
---|
635 | |
---|
636 | jvar=jvar+1 |
---|
637 | cl_name=tl_multi%t_mpp(ji)%t_proc(1)%t_var(jj)%c_name |
---|
638 | |
---|
639 | ! read variable over domain |
---|
640 | tl_var(jvar)=iom_dom_read_var(tl_mpp, TRIM(cl_name), tl_dom0) |
---|
641 | |
---|
642 | il_offset(:,:)=grid_get_fine_offset(tl_coord0, & |
---|
643 | & il_imin0, il_jmin0, & |
---|
644 | & il_imax0, il_jmax0, & |
---|
645 | & tl_coord1, & |
---|
646 | & id_rho=il_rho(:), & |
---|
647 | & cd_point=TRIM(tl_var(jvar)%c_point)) |
---|
648 | |
---|
649 | |
---|
650 | ! interpolate variable |
---|
651 | CALL create_restart_interp(tl_var(jvar), tl_level(:), & |
---|
652 | & il_rho(:), & |
---|
653 | & id_offset=il_offset(:,:)) |
---|
654 | |
---|
655 | ! remove extraband added to domain |
---|
656 | CALL dom_del_extra( tl_var(jvar), tl_dom0, il_rho(:) ) |
---|
657 | |
---|
658 | ! add attribute to variable |
---|
659 | tl_att=att_init('src_file',TRIM(fct_basename(tl_mpp%c_name))) |
---|
660 | CALL var_move_att(tl_var(jvar), tl_att) |
---|
661 | |
---|
662 | tl_att=att_init('src_i-indices',(/il_imin0, il_imax0/)) |
---|
663 | CALL var_move_att(tl_var(jvar), tl_att) |
---|
664 | |
---|
665 | tl_att=att_init('src_j-indices',(/il_jmin0, il_jmax0/)) |
---|
666 | CALL var_move_att(tl_var(jvar), tl_att) |
---|
667 | |
---|
668 | IF( ANY(il_rho(:)/=1) )THEN |
---|
669 | tl_att=att_init("refinment_factor", & |
---|
670 | & (/il_rho(jp_I),il_rho(jp_J)/)) |
---|
671 | CALL var_move_att(tl_var(jvar), tl_att) |
---|
672 | ENDIF |
---|
673 | |
---|
674 | ! clean structure |
---|
675 | CALL att_clean(tl_att) |
---|
676 | |
---|
677 | ! use mask |
---|
678 | CALL create_restart_mask(tl_var(jvar), tl_level(:)) |
---|
679 | |
---|
680 | ! add ghost cell |
---|
681 | CALL grid_add_ghost( tl_var(jvar), il_xghost(:,:) ) |
---|
682 | |
---|
683 | |
---|
684 | ENDDO |
---|
685 | |
---|
686 | ! close mpp file |
---|
687 | CALL iom_dom_close(tl_mpp) |
---|
688 | |
---|
689 | ! clean structure |
---|
690 | CALL mpp_clean(tl_mpp) |
---|
691 | CALL dom_clean(tl_dom0) |
---|
692 | |
---|
693 | ENDIF |
---|
694 | |
---|
695 | ! clean structure |
---|
696 | CALL mpp_clean(tl_mpp) |
---|
697 | ENDIF |
---|
698 | ENDDO |
---|
699 | ENDIF |
---|
700 | |
---|
701 | il_nvar=tl_multi%i_nvar |
---|
702 | |
---|
703 | ! clean |
---|
704 | CALL multi_clean(tl_multi) |
---|
705 | CALL mpp_clean(tl_coord0) |
---|
706 | |
---|
707 | ! use additional request |
---|
708 | DO jvar=1,il_nvar |
---|
709 | |
---|
710 | ! forced min and max value |
---|
711 | CALL var_limit_value(tl_var(jvar)) |
---|
712 | |
---|
713 | ! filter |
---|
714 | CALL filter_fill_value(tl_var(jvar)) |
---|
715 | |
---|
716 | ! extrapolate |
---|
717 | CALL extrap_fill_value(tl_var(jvar), id_iext=in_extrap, & |
---|
718 | & id_jext=in_extrap, & |
---|
719 | & id_kext=in_extrap) |
---|
720 | |
---|
721 | ENDDO |
---|
722 | |
---|
723 | ! create file |
---|
724 | IF( in_niproc == 0 .AND. & |
---|
725 | & in_njproc == 0 .AND. & |
---|
726 | & in_nproc == 0 )THEN |
---|
727 | in_niproc = 1 |
---|
728 | in_njproc = 1 |
---|
729 | in_nproc = 1 |
---|
730 | ENDIF |
---|
731 | |
---|
732 | ! add dimension |
---|
733 | tl_dim(:)=var_max_dim(tl_var(:)) |
---|
734 | |
---|
735 | DO ji=1,il_nvar |
---|
736 | |
---|
737 | IF( ALL(tl_var(ji)%t_dim(:)%i_len == tl_dim(:)%i_len) )THEN |
---|
738 | tl_mppout=mpp_init( TRIM(cn_fileout), tl_var(ji), & |
---|
739 | & in_niproc, in_njproc, in_nproc, & |
---|
740 | & cd_type=cn_type) |
---|
741 | EXIT |
---|
742 | ENDIF |
---|
743 | |
---|
744 | ENDDO |
---|
745 | |
---|
746 | DO ji=1,ip_maxdim |
---|
747 | IF( tl_dim(ji)%l_use )THEN |
---|
748 | CALL mpp_move_dim(tl_mppout, tl_dim(ji)) |
---|
749 | SELECT CASE(TRIM(tl_dim(ji)%c_sname)) |
---|
750 | CASE('z','t') |
---|
751 | DO jj=1,tl_mppout%i_nproc |
---|
752 | CALL file_add_dim(tl_mppout%t_proc(jj), tl_dim(ji)) |
---|
753 | ENDDO |
---|
754 | END SELECT |
---|
755 | ENDIF |
---|
756 | ENDDO |
---|
757 | |
---|
758 | ! add variables |
---|
759 | IF( ALL( tl_dim(1:2)%l_use ) )THEN |
---|
760 | |
---|
761 | ! open mpp files |
---|
762 | CALL iom_mpp_open(tl_coord1) |
---|
763 | |
---|
764 | ! add longitude |
---|
765 | tl_lon=iom_mpp_read_var(tl_coord1,'longitude') |
---|
766 | CALL mpp_add_var(tl_mppout, tl_lon) |
---|
767 | CALL var_clean(tl_lon) |
---|
768 | |
---|
769 | ! add latitude |
---|
770 | tl_lat=iom_mpp_read_var(tl_coord1,'latitude') |
---|
771 | CALL mpp_add_var(tl_mppout, tl_lat) |
---|
772 | CALL var_clean(tl_lat) |
---|
773 | |
---|
774 | ! close mpp files |
---|
775 | CALL iom_mpp_close(tl_coord1) |
---|
776 | |
---|
777 | ENDIF |
---|
778 | |
---|
779 | IF( tl_dim(3)%l_use )THEN |
---|
780 | IF( ASSOCIATED(tl_depth%d_value) )THEN |
---|
781 | ! add depth |
---|
782 | CALL mpp_add_var(tl_mppout, tl_depth) |
---|
783 | ELSE |
---|
784 | CALL logger_error("CREATE RESTART: no value for depth variable.") |
---|
785 | ENDIF |
---|
786 | ENDIF |
---|
787 | IF( ASSOCIATED(tl_depth%d_value) ) CALL var_clean(tl_depth) |
---|
788 | |
---|
789 | IF( tl_dim(4)%l_use )THEN |
---|
790 | IF( ASSOCIATED(tl_time%d_value) )THEN |
---|
791 | ! add time |
---|
792 | CALL mpp_add_var(tl_mppout, tl_time) |
---|
793 | ELSE |
---|
794 | CALL logger_error("CREATE RESTART: no value for time variable.") |
---|
795 | ENDIF |
---|
796 | ENDIF |
---|
797 | IF( ASSOCIATED(tl_time%d_value) ) CALL var_clean(tl_time) |
---|
798 | |
---|
799 | ! add other variable |
---|
800 | DO jvar=1,il_nvar |
---|
801 | ! check if variable already add |
---|
802 | il_index=var_get_index(tl_mppout%t_proc(1)%t_var(:), tl_var(jvar)%c_name) |
---|
803 | IF( il_index == 0 )THEN |
---|
804 | CALL mpp_add_var(tl_mppout, tl_var(jvar)) |
---|
805 | CALL var_clean(tl_var(jvar)) |
---|
806 | ENDIF |
---|
807 | ENDDO |
---|
808 | |
---|
809 | ! DO ji=1,4 |
---|
810 | ! CALL grid_add_ghost( tl_level(ji), il_xghost(:,:) ) |
---|
811 | ! CALL var_clean(tl_level(ji)) |
---|
812 | ! ENDDO |
---|
813 | |
---|
814 | ! add some attribute |
---|
815 | tl_att=att_init("Created_by","SIREN create_restart") |
---|
816 | CALL mpp_add_att(tl_mppout, tl_att) |
---|
817 | |
---|
818 | cl_date=date_print(date_now()) |
---|
819 | tl_att=att_init("Creation_date",TRIM(cl_date)) |
---|
820 | CALL mpp_add_att(tl_mppout, tl_att) |
---|
821 | |
---|
822 | ! add attribute periodicity |
---|
823 | il_attid=0 |
---|
824 | IF( ASSOCIATED(tl_mppout%t_proc(1)%t_att) )THEN |
---|
825 | il_attid=att_get_id(tl_mppout%t_proc(1)%t_att(:),'periodicity') |
---|
826 | ENDIF |
---|
827 | IF( tl_coord1%i_perio >= 0 .AND. il_attid == 0 )THEN |
---|
828 | tl_att=att_init('periodicity',tl_coord1%i_perio) |
---|
829 | CALL mpp_add_att(tl_mppout,tl_att) |
---|
830 | ENDIF |
---|
831 | |
---|
832 | il_attid=0 |
---|
833 | IF( ASSOCIATED(tl_mppout%t_proc(1)%t_att) )THEN |
---|
834 | il_attid=att_get_id(tl_mppout%t_proc(1)%t_att(:),'ew_overlap') |
---|
835 | ENDIF |
---|
836 | IF( tl_coord1%i_ew >= 0 .AND. il_attid == 0 )THEN |
---|
837 | tl_att=att_init('ew_overlap',tl_coord1%i_ew) |
---|
838 | CALL mpp_add_att(tl_mppout,tl_att) |
---|
839 | ENDIF |
---|
840 | |
---|
841 | ! create file |
---|
842 | CALL iom_mpp_create(tl_mppout) |
---|
843 | |
---|
844 | ! write file |
---|
845 | CALL iom_mpp_write_file(tl_mppout) |
---|
846 | ! close file |
---|
847 | CALL iom_mpp_close(tl_mppout) |
---|
848 | |
---|
849 | ! print |
---|
850 | CALL mpp_print(tl_mppout) |
---|
851 | |
---|
852 | ! clean |
---|
853 | CALL att_clean(tl_att) |
---|
854 | CALL var_clean(tl_var(:)) |
---|
855 | DEALLOCATE(tl_var) |
---|
856 | CALL var_clean(tl_level(:)) |
---|
857 | DEALLOCATE(tl_level) |
---|
858 | |
---|
859 | CALL mpp_clean(tl_mppout) |
---|
860 | CALL mpp_clean(tl_coord1) |
---|
861 | |
---|
862 | ! close log file |
---|
863 | CALL logger_footer() |
---|
864 | CALL logger_close() |
---|
865 | |
---|
866 | CONTAINS |
---|
867 | !------------------------------------------------------------------- |
---|
868 | !> @brief |
---|
869 | !> This function create variable, filled with matrix value |
---|
870 | !> |
---|
871 | !> @details |
---|
872 | !> A variable is create with the same name that the input variable, |
---|
873 | !> and with dimension of the coordinate file.<br/> |
---|
874 | !> Then the variable array of value is split into equal subdomain. |
---|
875 | !> Each subdomain is filled with the corresponding value of the matrix. |
---|
876 | !> |
---|
877 | !> @author J.Paul |
---|
878 | !> - November, 2013- Initial Version |
---|
879 | !> |
---|
880 | !> @param[in] td_var variable structure |
---|
881 | !> @param[in] td_coord coordinate file structure |
---|
882 | !> @param[in] id_nlevel number of vertical level |
---|
883 | !> @param[in] td_level array of level on T,U,V,F point (variable structure) |
---|
884 | !> @return variable structure |
---|
885 | !------------------------------------------------------------------- |
---|
886 | FUNCTION create_restart_matrix(td_var, td_coord, id_nlevel, td_level) |
---|
887 | IMPLICIT NONE |
---|
888 | ! Argument |
---|
889 | TYPE(TVAR) , INTENT(IN) :: td_var |
---|
890 | TYPE(TMPP) , INTENT(IN) :: td_coord |
---|
891 | INTEGER(i4) , INTENT(IN) :: id_nlevel |
---|
892 | TYPE(TVAR), DIMENSION(:), INTENT(IN) :: td_level |
---|
893 | |
---|
894 | ! function |
---|
895 | TYPE(TVAR) :: create_restart_matrix |
---|
896 | |
---|
897 | ! local variable |
---|
898 | INTEGER(i4) , DIMENSION(3) :: il_dim |
---|
899 | INTEGER(i4) , DIMENSION(3) :: il_size |
---|
900 | INTEGER(i4) , DIMENSION(3) :: il_rest |
---|
901 | INTEGER(i4) , DIMENSION(2,2) :: il_xghost |
---|
902 | |
---|
903 | INTEGER(i4) , DIMENSION(:) , ALLOCATABLE :: il_ishape |
---|
904 | INTEGER(i4) , DIMENSION(:) , ALLOCATABLE :: il_jshape |
---|
905 | INTEGER(i4) , DIMENSION(:) , ALLOCATABLE :: il_kshape |
---|
906 | |
---|
907 | REAL(dp) , DIMENSION(:,:,:,:), ALLOCATABLE :: dl_value |
---|
908 | |
---|
909 | TYPE(TDIM) , DIMENSION(ip_maxdim) :: tl_dim |
---|
910 | |
---|
911 | ! loop indices |
---|
912 | INTEGER(i4) :: ji |
---|
913 | INTEGER(i4) :: jj |
---|
914 | INTEGER(i4) :: jk |
---|
915 | !---------------------------------------------------------------- |
---|
916 | |
---|
917 | ! look for ghost cell |
---|
918 | il_xghost(:,:)=grid_get_ghost( td_coord ) |
---|
919 | |
---|
920 | ! write value on grid |
---|
921 | ! get matrix dimension |
---|
922 | il_dim(:)=td_var%t_dim(1:3)%i_len |
---|
923 | |
---|
924 | ! output dimension |
---|
925 | tl_dim(jp_I:jp_J)=dim_copy(td_coord%t_dim(jp_I:jp_J)) |
---|
926 | IF( id_nlevel >= 1 )THEN |
---|
927 | tl_dim(jp_K)=dim_init('Z',id_nlevel) |
---|
928 | ENDIF |
---|
929 | |
---|
930 | ! remove ghost cell |
---|
931 | tl_dim(jp_I)%i_len=tl_dim(jp_I)%i_len - SUM(il_xghost(jp_I,:))*ip_ghost |
---|
932 | tl_dim(jp_J)%i_len=tl_dim(jp_J)%i_len - SUM(il_xghost(jp_J,:))*ip_ghost |
---|
933 | |
---|
934 | ! split output domain in N subdomain depending of matrix dimension |
---|
935 | il_size(:) = tl_dim(1:3)%i_len / il_dim(:) |
---|
936 | il_rest(:) = MOD(tl_dim(1:3)%i_len, il_dim(:)) |
---|
937 | |
---|
938 | ALLOCATE( il_ishape(il_dim(1)+1) ) |
---|
939 | il_ishape(:)=0 |
---|
940 | DO ji=2,il_dim(1)+1 |
---|
941 | il_ishape(ji)=il_ishape(ji-1)+il_size(1) |
---|
942 | ENDDO |
---|
943 | ! add rest to last cell |
---|
944 | il_ishape(il_dim(1)+1)=il_ishape(il_dim(1)+1)+il_rest(1) |
---|
945 | |
---|
946 | ALLOCATE( il_jshape(il_dim(2)+1) ) |
---|
947 | il_jshape(:)=0 |
---|
948 | DO jj=2,il_dim(2)+1 |
---|
949 | il_jshape(jj)=il_jshape(jj-1)+il_size(2) |
---|
950 | ENDDO |
---|
951 | ! add rest to last cell |
---|
952 | il_jshape(il_dim(2)+1)=il_jshape(il_dim(2)+1)+il_rest(2) |
---|
953 | |
---|
954 | ALLOCATE( il_kshape(il_dim(3)+1) ) |
---|
955 | il_kshape(:)=0 |
---|
956 | DO jk=2,il_dim(3)+1 |
---|
957 | il_kshape(jk)=il_kshape(jk-1)+il_size(3) |
---|
958 | ENDDO |
---|
959 | ! add rest to last cell |
---|
960 | il_kshape(il_dim(3)+1)=il_kshape(il_dim(3)+1)+il_rest(3) |
---|
961 | |
---|
962 | ! write ouput array of value |
---|
963 | ALLOCATE(dl_value( tl_dim(1)%i_len, & |
---|
964 | & tl_dim(2)%i_len, & |
---|
965 | & tl_dim(3)%i_len, & |
---|
966 | & tl_dim(4)%i_len) ) |
---|
967 | |
---|
968 | dl_value(:,:,:,:)=0 |
---|
969 | |
---|
970 | DO jk=2,il_dim(3)+1 |
---|
971 | DO jj=2,il_dim(2)+1 |
---|
972 | DO ji=2,il_dim(1)+1 |
---|
973 | |
---|
974 | dl_value( 1+il_ishape(ji-1):il_ishape(ji), & |
---|
975 | & 1+il_jshape(jj-1):il_jshape(jj), & |
---|
976 | & 1+il_kshape(jk-1):il_kshape(jk), & |
---|
977 | & 1 ) = td_var%d_value(ji-1,jj-1,jk-1,1) |
---|
978 | |
---|
979 | ENDDO |
---|
980 | ENDDO |
---|
981 | ENDDO |
---|
982 | |
---|
983 | ! keep attribute and type |
---|
984 | create_restart_matrix=var_copy(td_var) |
---|
985 | DEALLOCATE( create_restart_matrix%d_value ) |
---|
986 | ! save new dimension |
---|
987 | create_restart_matrix%t_dim(:)=dim_copy(tl_dim(:)) |
---|
988 | ! add variable value |
---|
989 | CALL var_add_value( create_restart_matrix, dl_value(:,:,:,:), & |
---|
990 | & id_type=td_var%i_type) |
---|
991 | |
---|
992 | DEALLOCATE(dl_value) |
---|
993 | |
---|
994 | ! use mask |
---|
995 | CALL create_restart_mask(create_restart_matrix, td_level(:)) |
---|
996 | |
---|
997 | ! add ghost cell |
---|
998 | CALL grid_add_ghost( create_restart_matrix, il_xghost(:,:) ) |
---|
999 | |
---|
1000 | ! clean |
---|
1001 | DEALLOCATE(il_ishape) |
---|
1002 | DEALLOCATE(il_jshape) |
---|
1003 | DEALLOCATE(il_kshape) |
---|
1004 | |
---|
1005 | END FUNCTION create_restart_matrix |
---|
1006 | !------------------------------------------------------------------- |
---|
1007 | !> @brief |
---|
1008 | !> This subroutine use mask to filled land point with _FillValue |
---|
1009 | !> |
---|
1010 | !> @author J.Paul |
---|
1011 | !> - November, 2013- Initial Version |
---|
1012 | !> |
---|
1013 | !> @param[inout] td_var variable structure |
---|
1014 | !> @param[in] td_mask mask variable structure |
---|
1015 | !------------------------------------------------------------------- |
---|
1016 | SUBROUTINE create_restart_mask( td_var, td_mask ) |
---|
1017 | |
---|
1018 | IMPLICIT NONE |
---|
1019 | |
---|
1020 | ! Argument |
---|
1021 | TYPE(TVAR) , INTENT(INOUT) :: td_var |
---|
1022 | TYPE(TVAR), DIMENSION(:), INTENT(IN ) :: td_mask |
---|
1023 | |
---|
1024 | ! local variable |
---|
1025 | INTEGER(i4), DIMENSION(:,:), ALLOCATABLE :: il_mask |
---|
1026 | |
---|
1027 | ! loop indices |
---|
1028 | INTEGER(i4) :: jl |
---|
1029 | INTEGER(i4) :: jk |
---|
1030 | !---------------------------------------------------------------- |
---|
1031 | |
---|
1032 | IF( ALL(td_var%t_dim(1:2)%l_use) )THEN |
---|
1033 | IF( ANY(td_var%t_dim(1:2)%i_len /= td_mask(1)%t_dim(1:2)%i_len) )THEN |
---|
1034 | CALL logger_error("CREATE RESTART MASK: dimension differ between"//& |
---|
1035 | & " variable "//TRIM(td_var%c_name)//" ("//& |
---|
1036 | & TRIM(fct_str(td_var%t_dim(1)%i_len))//","//& |
---|
1037 | & TRIM(fct_str(td_var%t_dim(2)%i_len))//& |
---|
1038 | & ") and level ("//& |
---|
1039 | & TRIM(fct_str(td_mask(1)%t_dim(1)%i_len))//","//& |
---|
1040 | & TRIM(fct_str(td_mask(1)%t_dim(2)%i_len))//")") |
---|
1041 | ELSE |
---|
1042 | ALLOCATE( il_mask(td_var%t_dim(1)%i_len, & |
---|
1043 | & td_var%t_dim(2)%i_len) ) |
---|
1044 | |
---|
1045 | SELECT CASE(TRIM(td_var%c_point)) |
---|
1046 | CASE('T') |
---|
1047 | il_mask(:,:)=INT(td_mask(jp_T)%d_value(:,:,1,1)) |
---|
1048 | CASE('U') |
---|
1049 | il_mask(:,:)=INT(td_mask(jp_U)%d_value(:,:,1,1)) |
---|
1050 | CASE('V') |
---|
1051 | il_mask(:,:)=INT(td_mask(jp_V)%d_value(:,:,1,1)) |
---|
1052 | CASE('F') |
---|
1053 | il_mask(:,:)=INT(td_mask(jp_F)%d_value(:,:,1,1)) |
---|
1054 | END SELECT |
---|
1055 | |
---|
1056 | DO jl=1,td_var%t_dim(4)%i_len |
---|
1057 | DO jk=1,td_var%t_dim(3)%i_len |
---|
1058 | WHERE( il_mask(:,:) < jk ) |
---|
1059 | td_var%d_value(:,:,jk,jl)=td_var%d_fill |
---|
1060 | END WHERE |
---|
1061 | ENDDO |
---|
1062 | ENDDO |
---|
1063 | |
---|
1064 | DEALLOCATE( il_mask ) |
---|
1065 | ENDIF |
---|
1066 | ENDIF |
---|
1067 | END SUBROUTINE create_restart_mask |
---|
1068 | !------------------------------------------------------------------- |
---|
1069 | !> @brief |
---|
1070 | !> This subroutine interpolate variable |
---|
1071 | !> |
---|
1072 | !> @author J.Paul |
---|
1073 | !> - Nov, 2013- Initial Version |
---|
1074 | !> |
---|
1075 | !> @param[inout] td_var variable structure |
---|
1076 | !> @param[inout] td_level fine grid level, array of variable structure |
---|
1077 | !> @param[in] id_rho array of refinment factor |
---|
1078 | !> @param[in] id_offset array of offset between fine and coarse grid |
---|
1079 | !> @param[in] id_iext i-direction size of extra bands (default=im_minext) |
---|
1080 | !> @param[in] id_jext j-direction size of extra bands (default=im_minext) |
---|
1081 | !------------------------------------------------------------------- |
---|
1082 | SUBROUTINE create_restart_interp( td_var, td_level,& |
---|
1083 | & id_rho, & |
---|
1084 | & id_offset, & |
---|
1085 | & id_iext, id_jext) |
---|
1086 | |
---|
1087 | IMPLICIT NONE |
---|
1088 | |
---|
1089 | ! Argument |
---|
1090 | TYPE(TVAR) , INTENT(INOUT) :: td_var |
---|
1091 | TYPE(TVAR) , DIMENSION(:) , INTENT(INOUT) :: td_level |
---|
1092 | INTEGER(i4), DIMENSION(:) , INTENT(IN ) :: id_rho |
---|
1093 | INTEGER(i4), DIMENSION(:,:), INTENT(IN ) :: id_offset |
---|
1094 | INTEGER(i4), INTENT(IN ), OPTIONAL :: id_iext |
---|
1095 | INTEGER(i4), INTENT(IN ), OPTIONAL :: id_jext |
---|
1096 | |
---|
1097 | ! local variable |
---|
1098 | INTEGER(i4) :: il_iext |
---|
1099 | INTEGER(i4) :: il_jext |
---|
1100 | |
---|
1101 | ! loop indices |
---|
1102 | !---------------------------------------------------------------- |
---|
1103 | |
---|
1104 | il_iext=3 |
---|
1105 | IF( PRESENT(id_iext) ) il_iext=id_iext |
---|
1106 | |
---|
1107 | il_jext=3 |
---|
1108 | IF( PRESENT(id_jext) ) il_jext=id_jext |
---|
1109 | |
---|
1110 | IF( il_iext < 2 .AND. td_var%c_interp(1) == 'cubic' )THEN |
---|
1111 | CALL logger_warn("CREATE RESTART INTERP: at least extrapolation "//& |
---|
1112 | & "on two points are required with cubic interpolation ") |
---|
1113 | il_iext=2 |
---|
1114 | ENDIF |
---|
1115 | |
---|
1116 | IF( il_jext < 2 .AND. td_var%c_interp(1) == 'cubic' )THEN |
---|
1117 | CALL logger_warn("CREATE RESTART INTERP: at least extrapolation "//& |
---|
1118 | & "on two points are required with cubic interpolation ") |
---|
1119 | il_jext=2 |
---|
1120 | ENDIF |
---|
1121 | |
---|
1122 | ! work on variable |
---|
1123 | ! add extraband |
---|
1124 | CALL extrap_add_extrabands(td_var, il_iext, il_jext) |
---|
1125 | |
---|
1126 | ! extrapolate variable |
---|
1127 | CALL extrap_fill_value( td_var, td_level(:), & |
---|
1128 | & id_offset(:,:), & |
---|
1129 | & id_rho(:), & |
---|
1130 | & id_iext=il_iext, id_jext=il_jext ) |
---|
1131 | |
---|
1132 | ! interpolate variable |
---|
1133 | CALL interp_fill_value( td_var, id_rho(:), & |
---|
1134 | & id_offset=id_offset(:,:) ) |
---|
1135 | |
---|
1136 | ! remove extraband |
---|
1137 | CALL extrap_del_extrabands(td_var, il_iext*id_rho(jp_I), il_jext*id_rho(jp_J)) |
---|
1138 | |
---|
1139 | END SUBROUTINE create_restart_interp |
---|
1140 | !------------------------------------------------------------------- |
---|
1141 | !> @brief |
---|
1142 | !> This subroutine get depth variable value in an open mpp structure |
---|
1143 | !> and check if agree with already input depth variable. |
---|
1144 | !> |
---|
1145 | !> @details |
---|
1146 | !> |
---|
1147 | !> @author J.Paul |
---|
1148 | !> - November, 2014- Initial Version |
---|
1149 | !> |
---|
1150 | !> @param[in] td_mpp mpp structure |
---|
1151 | !> @param[inout] td_depth depth variable structure |
---|
1152 | !------------------------------------------------------------------- |
---|
1153 | SUBROUTINE create_restart_check_depth( td_mpp, td_depth ) |
---|
1154 | |
---|
1155 | IMPLICIT NONE |
---|
1156 | |
---|
1157 | ! Argument |
---|
1158 | TYPE(TMPP), INTENT(IN ) :: td_mpp |
---|
1159 | TYPE(TVAR), INTENT(INOUT) :: td_depth |
---|
1160 | |
---|
1161 | ! local variable |
---|
1162 | INTEGER(i4) :: il_varid |
---|
1163 | TYPE(TVAR) :: tl_depth |
---|
1164 | ! loop indices |
---|
1165 | !---------------------------------------------------------------- |
---|
1166 | |
---|
1167 | ! get or check depth value |
---|
1168 | IF( td_mpp%t_proc(1)%i_depthid /= 0 )THEN |
---|
1169 | |
---|
1170 | il_varid=td_mpp%t_proc(1)%i_depthid |
---|
1171 | IF( ASSOCIATED(td_depth%d_value) )THEN |
---|
1172 | |
---|
1173 | tl_depth=iom_mpp_read_var(td_mpp, il_varid) |
---|
1174 | IF( ANY( td_depth%d_value(:,:,:,:) /= & |
---|
1175 | & tl_depth%d_value(:,:,:,:) ) )THEN |
---|
1176 | |
---|
1177 | CALL logger_fatal("CREATE BOUNDARY: depth value from "//& |
---|
1178 | & TRIM(tl_multi%t_mpp(ji)%c_name)//" not conform "//& |
---|
1179 | & " to those from former file(s).") |
---|
1180 | |
---|
1181 | ENDIF |
---|
1182 | CALL var_clean(tl_depth) |
---|
1183 | |
---|
1184 | ELSE |
---|
1185 | td_depth=iom_mpp_read_var(td_mpp,il_varid) |
---|
1186 | ENDIF |
---|
1187 | |
---|
1188 | ENDIF |
---|
1189 | |
---|
1190 | END SUBROUTINE create_restart_check_depth |
---|
1191 | !------------------------------------------------------------------- |
---|
1192 | !> @brief |
---|
1193 | !> This subroutine get date and time in an open mpp structure |
---|
1194 | !> and check if agree with date and time already read. |
---|
1195 | !> |
---|
1196 | !> @details |
---|
1197 | !> |
---|
1198 | !> @author J.Paul |
---|
1199 | !> - November, 2014- Initial Version |
---|
1200 | !> |
---|
1201 | !> @param[in] td_mpp mpp structure |
---|
1202 | !> @param[inout] td_time time variable structure |
---|
1203 | !------------------------------------------------------------------- |
---|
1204 | SUBROUTINE create_restart_check_time( td_mpp, td_time ) |
---|
1205 | |
---|
1206 | IMPLICIT NONE |
---|
1207 | |
---|
1208 | ! Argument |
---|
1209 | TYPE(TMPP), INTENT(IN ) :: td_mpp |
---|
1210 | TYPE(TVAR), INTENT(INOUT) :: td_time |
---|
1211 | |
---|
1212 | ! local variable |
---|
1213 | INTEGER(i4) :: il_varid |
---|
1214 | TYPE(TVAR) :: tl_time |
---|
1215 | |
---|
1216 | TYPE(TDATE) :: tl_date1 |
---|
1217 | TYPE(TDATE) :: tl_date2 |
---|
1218 | ! loop indices |
---|
1219 | !---------------------------------------------------------------- |
---|
1220 | |
---|
1221 | ! get or check depth value |
---|
1222 | IF( td_mpp%t_proc(1)%i_timeid /= 0 )THEN |
---|
1223 | |
---|
1224 | il_varid=td_mpp%t_proc(1)%i_timeid |
---|
1225 | IF( ASSOCIATED(td_time%d_value) )THEN |
---|
1226 | |
---|
1227 | tl_time=iom_mpp_read_var(td_mpp, il_varid) |
---|
1228 | |
---|
1229 | tl_date1=var_to_date(td_time) |
---|
1230 | tl_date2=var_to_date(tl_time) |
---|
1231 | IF( tl_date1 - tl_date2 /= 0 )THEN |
---|
1232 | |
---|
1233 | CALL logger_fatal("CREATE BOUNDARY: date from "//& |
---|
1234 | & TRIM(tl_multi%t_mpp(ji)%c_name)//" not conform "//& |
---|
1235 | & " to those from former file(s).") |
---|
1236 | |
---|
1237 | ENDIF |
---|
1238 | CALL var_clean(tl_time) |
---|
1239 | |
---|
1240 | ELSE |
---|
1241 | td_time=iom_mpp_read_var(td_mpp,il_varid) |
---|
1242 | ENDIF |
---|
1243 | |
---|
1244 | ENDIF |
---|
1245 | |
---|
1246 | END SUBROUTINE create_restart_check_time |
---|
1247 | END PROGRAM create_restart |
---|