1 | MODULE trcini_fabm |
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2 | !!====================================================================== |
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3 | !! *** MODULE trcini_fabm *** |
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4 | !! TOP : initialisation of the FABM tracers |
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5 | !!====================================================================== |
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6 | !! History : 2.0 ! 2007-12 (C. Ethe, G. Madec) Original code |
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7 | !!---------------------------------------------------------------------- |
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8 | #if defined key_fabm |
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9 | !!---------------------------------------------------------------------- |
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10 | !! 'key_fabm' FABM tracers |
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11 | !!---------------------------------------------------------------------- |
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12 | !! trc_ini_fabm : FABM model initialisation |
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13 | !!---------------------------------------------------------------------- |
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14 | USE par_trc ! TOP parameters |
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15 | USE oce_trc |
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16 | USE trc |
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17 | USE par_fabm |
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18 | USE trcsms_fabm |
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19 | USE fabm_config,ONLY: fabm_create_model_from_yaml_file |
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20 | USE fabm,ONLY: type_external_variable, fabm_initialize_library |
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21 | USE inputs_fabm,ONLY: initialize_inputs,link_inputs, & |
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22 | type_input_variable,type_input_data,type_river_data, & |
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23 | first_input_data,first_river_data |
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24 | #if defined key_git_version |
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25 | USE fabm_version,ONLY: fabm_commit_id=>git_commit_id, & |
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26 | fabm_branch_name=>git_branch_name |
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27 | USE fabm_types,ONLY: type_version,first_module_version |
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28 | #endif |
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29 | |
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30 | |
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31 | IMPLICIT NONE |
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32 | PRIVATE |
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33 | |
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34 | #if defined key_git_version |
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35 | !#include "gitversion.h90" |
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36 | CHARACTER(len=*),parameter :: git_commit_id = _NEMO_COMMIT_ID_ |
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37 | CHARACTER(len=*),parameter :: git_branch_name = _NEMO_BRANCH_ |
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38 | #endif |
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39 | |
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40 | PUBLIC trc_ini_fabm ! called by trcini.F90 module |
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41 | PUBLIC nemo_fabm_init |
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42 | |
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43 | !!---------------------------------------------------------------------- |
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44 | !! NEMO/TOP 3.3 , NEMO Consortium (2010) |
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45 | !! $Id$ |
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46 | !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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47 | !!---------------------------------------------------------------------- |
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48 | CONTAINS |
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49 | |
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50 | SUBROUTINE nemo_fabm_init() |
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51 | INTEGER :: jn |
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52 | INTEGER, PARAMETER :: xml_unit = 1979 |
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53 | TYPE (type_input_data),POINTER :: input_data |
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54 | TYPE (type_river_data),POINTER :: river_data |
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55 | CLASS (type_input_variable),POINTER :: input_pointer |
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56 | |
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57 | ! Allow FABM to parse fabm.yaml. This ensures numbers of variables are known. |
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58 | call fabm_create_model_from_yaml_file(model) |
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59 | |
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60 | jp_fabm = size(model%state_variables) |
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61 | jp_fabm_bottom = size(model%bottom_state_variables) |
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62 | jp_fabm_surface = size(model%surface_state_variables) |
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63 | jp_fabm0 = jptra + 1 |
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64 | jp_fabm1 = jptra + jp_fabm |
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65 | jp_fabm_m1=jptra |
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66 | jptra = jptra + jp_fabm |
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67 | jp_fabm_2d = size(model%horizontal_diagnostic_variables) |
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68 | jp_fabm_3d = size(model%diagnostic_variables) |
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69 | jpdia2d = jpdia2d + jp_fabm_2d |
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70 | jpdia3d = jpdia3d + jp_fabm_3d |
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71 | jpdiabio = jpdiabio + jp_fabm |
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72 | |
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73 | !Initialize input data structures. |
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74 | call initialize_inputs |
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75 | |
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76 | ! Get indexes for select state variables |
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77 | jp_fabm_chl1 = fabm_state_index( 'P1_Chl' ) |
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78 | jp_fabm_chl2 = fabm_state_index( 'P2_Chl' ) |
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79 | jp_fabm_chl3 = fabm_state_index( 'P3_Chl' ) |
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80 | jp_fabm_chl4 = fabm_state_index( 'P4_Chl' ) |
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81 | jp_fabm_p1c = fabm_state_index( 'P1_c' ) |
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82 | jp_fabm_p1n = fabm_state_index( 'P1_n' ) |
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83 | jp_fabm_p1p = fabm_state_index( 'P1_p' ) |
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84 | jp_fabm_p1s = fabm_state_index( 'P1_s' ) |
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85 | jp_fabm_p2c = fabm_state_index( 'P2_c' ) |
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86 | jp_fabm_p2n = fabm_state_index( 'P2_n' ) |
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87 | jp_fabm_p2p = fabm_state_index( 'P2_p' ) |
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88 | jp_fabm_p3c = fabm_state_index( 'P3_c' ) |
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89 | jp_fabm_p3n = fabm_state_index( 'P3_n' ) |
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90 | jp_fabm_p3p = fabm_state_index( 'P3_p' ) |
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91 | jp_fabm_p4c = fabm_state_index( 'P4_c' ) |
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92 | jp_fabm_p4n = fabm_state_index( 'P4_n' ) |
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93 | jp_fabm_p4p = fabm_state_index( 'P4_p' ) |
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94 | jp_fabm_z4c = fabm_state_index( 'Z4_c' ) |
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95 | jp_fabm_z5c = fabm_state_index( 'Z5_c' ) |
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96 | jp_fabm_z5n = fabm_state_index( 'Z5_n' ) |
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97 | jp_fabm_z5p = fabm_state_index( 'Z5_p' ) |
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98 | jp_fabm_z6c = fabm_state_index( 'Z6_c' ) |
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99 | jp_fabm_z6n = fabm_state_index( 'Z6_n' ) |
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100 | jp_fabm_z6p = fabm_state_index( 'Z6_p' ) |
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101 | jp_fabm_n1p = fabm_state_index( 'N1_p' ) |
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102 | jp_fabm_n3n = fabm_state_index( 'N3_n' ) |
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103 | jp_fabm_n4n = fabm_state_index( 'N4_n' ) |
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104 | jp_fabm_n5s = fabm_state_index( 'N5_s' ) |
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105 | jp_fabm_o2o = fabm_state_index( 'O2_o' ) |
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106 | jp_fabm_o3c = fabm_state_index( 'O3_c' ) |
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107 | jp_fabm_o3ba = fabm_state_index( 'O3_bioalk' ) |
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108 | jp_fabm_r4n = fabm_state_index( 'R4_n' ) |
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109 | jp_fabm_r4c = fabm_state_index( 'R4_c' ) |
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110 | jp_fabm_r4p = fabm_state_index( 'R4_p' ) |
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111 | jp_fabm_r6n = fabm_state_index( 'R6_n' ) |
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112 | jp_fabm_r6c = fabm_state_index( 'R6_c' ) |
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113 | jp_fabm_r6p = fabm_state_index( 'R6_p' ) |
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114 | jp_fabm_r6s = fabm_state_index( 'R6_s' ) |
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115 | jp_fabm_r8n = fabm_state_index( 'R8_n' ) |
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116 | jp_fabm_r8c = fabm_state_index( 'R8_c' ) |
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117 | jp_fabm_r8p = fabm_state_index( 'R8_p' ) |
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118 | jp_fabm_r8s = fabm_state_index( 'R8_s' ) |
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119 | |
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120 | ! Get indexes for select diagnostic variables |
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121 | jp_fabm_o3ta = fabm_diag_index( 'O3_TA' ) |
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122 | jp_fabm_o3ph = fabm_diag_index( 'O3_pH' ) |
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123 | jp_fabm_o3pc = fabm_diag_index( 'O3_pCO2' ) |
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124 | jp_fabm_xeps = fabm_diag_index( 'light_xEPS' ) |
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125 | jp_fabm_pgrow = fabm_diag_index( 'p_grow_sum_result' ) |
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126 | jp_fabm_ploss = fabm_diag_index( 'p_loss_sum_result' ) |
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127 | |
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128 | IF (lwp) THEN |
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129 | ! write field_def_fabm.xml on lead process |
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130 | OPEN(UNIT=xml_unit,FILE='field_def_fabm.xml',ACTION='WRITE',STATUS='REPLACE') |
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131 | |
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132 | WRITE (xml_unit,1000) '<field_definition level="1" prec="4" operation="average" enabled=".TRUE." default_value="1.e20" >' |
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133 | |
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134 | WRITE (xml_unit,1000) ' <field_group id="ptrc_T" grid_ref="grid_T_3D">' |
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135 | DO jn=1,jp_fabm |
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136 | CALL write_variable_xml(xml_unit,model%state_variables(jn)) |
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137 | #if defined key_trdtrc |
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138 | CALL write_trends_xml(xml_unit,model%state_variables(jn)) |
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139 | #endif |
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140 | CALL write_25hourm_xml(xml_unit,model%state_variables(jn)) |
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141 | CALL write_tmb_xml(xml_unit,model%state_variables(jn)) |
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142 | END DO |
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143 | WRITE (xml_unit,1000) ' </field_group>' |
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144 | |
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145 | WRITE (xml_unit,1000) ' <field_group id="sf_T" grid_ref="grid_T_2D">' |
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146 | DO jn=1,jp_fabm_surface |
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147 | CALL write_variable_xml(xml_unit,model%surface_state_variables(jn)) |
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148 | CALL write_25hourm_xml(xml_unit,model%surface_state_variables(jn)) |
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149 | END DO |
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150 | DO jn=1,jp_fabm_bottom |
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151 | CALL write_variable_xml(xml_unit,model%bottom_state_variables(jn)) |
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152 | CALL write_25hourm_xml(xml_unit,model%bottom_state_variables(jn)) |
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153 | END DO |
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154 | WRITE (xml_unit,1000) ' </field_group>' |
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155 | |
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156 | WRITE (xml_unit,1000) ' <field_group id="diad_T" grid_ref="grid_T_2D">' |
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157 | DO jn=1,size(model%diagnostic_variables) |
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158 | CALL write_variable_xml(xml_unit,model%diagnostic_variables(jn),3) |
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159 | CALL write_25hourm_xml(xml_unit,model%diagnostic_variables(jn),3) |
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160 | CALL write_tmb_xml(xml_unit,model%diagnostic_variables(jn)) |
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161 | END DO |
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162 | DO jn=1,size(model%horizontal_diagnostic_variables) |
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163 | CALL write_variable_xml(xml_unit,model%horizontal_diagnostic_variables(jn)) |
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164 | CALL write_25hourm_xml(xml_unit,model%horizontal_diagnostic_variables(jn)) |
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165 | END DO |
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166 | WRITE (xml_unit,1000) ' </field_group>' |
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167 | |
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168 | WRITE (xml_unit,1000) ' <field_group id="fabm_scalar" grid_ref="grid_0">' |
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169 | DO jn=1,size(model%conserved_quantities) |
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170 | CALL write_variable_xml(xml_unit,model%conserved_quantities(jn)) |
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171 | END DO |
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172 | WRITE (xml_unit,1000) ' </field_group>' |
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173 | |
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174 | WRITE (xml_unit,1000) ' <field_group id="fabm_input" grid_ref="grid_T_2D">' |
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175 | input_data => first_input_data |
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176 | DO WHILE (ASSOCIATED(input_data)) |
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177 | input_pointer => input_data |
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178 | CALL write_input_xml(xml_unit,input_pointer) |
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179 | input_data => input_data%next |
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180 | END DO |
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181 | river_data => first_river_data |
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182 | DO WHILE (ASSOCIATED(river_data)) |
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183 | input_pointer => river_data |
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184 | CALL write_input_xml(xml_unit,input_pointer,3) |
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185 | river_data => river_data%next |
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186 | END DO |
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187 | WRITE (xml_unit,1000) ' </field_group>' |
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188 | |
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189 | WRITE (xml_unit,1000) '</field_definition>' |
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190 | |
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191 | CLOSE(xml_unit) |
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192 | END IF |
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193 | IF( lk_mpp ) CALL mppsync !Ensure field_def_fabm is ready. |
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194 | |
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195 | 1000 FORMAT (A) |
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196 | |
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197 | END SUBROUTINE nemo_fabm_init |
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198 | |
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199 | SUBROUTINE write_variable_xml(xml_unit,variable,flag_grid_ref) |
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200 | INTEGER,INTENT(IN) :: xml_unit |
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201 | INTEGER,INTENT(IN),OPTIONAL :: flag_grid_ref |
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202 | CLASS (type_external_variable),INTENT(IN) :: variable |
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203 | |
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204 | CHARACTER(LEN=20) :: missing_value,string_dimensions |
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205 | INTEGER :: number_dimensions |
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206 | |
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207 | ! Check variable dimension for grid_ref specificaiton. |
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208 | ! Default is to not specify the grid_ref in the field definition. |
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209 | IF (present(flag_grid_ref)) THEN |
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210 | number_dimensions=flag_grid_ref |
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211 | ELSE |
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212 | number_dimensions=-1 !default, don't specify grid_ref |
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213 | ENDIF |
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214 | |
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215 | WRITE (missing_value,'(E9.3)') variable%missing_value |
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216 | WRITE (string_dimensions,'(I1)') number_dimensions |
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217 | SELECT CASE (number_dimensions) |
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218 | CASE (3) |
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219 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(variable%name)//'" long_name="'//TRIM(variable%long_name)//'" unit="'//TRIM(variable%units)//'" default_value="'//TRIM(ADJUSTL(missing_value))//'" grid_ref="grid_T_3D" />' |
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220 | CASE (2) |
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221 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(variable%name)//'" long_name="'//TRIM(variable%long_name)//'" unit="'//TRIM(variable%units)//'" default_value="'//TRIM(ADJUSTL(missing_value))//'" grid_ref="grid_T_2D"/>' |
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222 | CASE (0) |
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223 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(variable%name)//'" long_name="'//TRIM(variable%long_name)//'" unit="'//TRIM(variable%units)//'" default_value="'//TRIM(ADJUSTL(missing_value))//'" grid_ref="1point"/>' |
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224 | CASE (-1) |
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225 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(variable%name)//'" long_name="'//TRIM(variable%long_name)//'" unit="'//TRIM(variable%units)//'" default_value="'//TRIM(ADJUSTL(missing_value))//'" />' |
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226 | CASE default |
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227 | IF(lwp) WRITE(numout,*) ' trc_ini_fabm: Failing to initialise output of variable '//TRIM(variable%name)//': Output of '//TRIM(ADJUSTL(string_dimensions))//'-dimensional variables not supported!!!' |
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228 | END SELECT |
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229 | |
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230 | END SUBROUTINE write_variable_xml |
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231 | |
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232 | SUBROUTINE write_25hourm_xml(xml_unit,variable,flag_grid_ref) |
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233 | INTEGER,INTENT(IN) :: xml_unit |
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234 | INTEGER,INTENT(IN),OPTIONAL :: flag_grid_ref |
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235 | CLASS (type_external_variable),INTENT(IN) :: variable |
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236 | |
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237 | CHARACTER(LEN=20) :: missing_value,string_dimensions |
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238 | INTEGER :: number_dimensions |
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239 | |
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240 | ! Check variable dimension for grid_ref specificaiton. |
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241 | ! Default is to not specify the grid_ref in the field definition. |
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242 | IF (present(flag_grid_ref)) THEN |
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243 | number_dimensions=flag_grid_ref |
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244 | ELSE |
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245 | number_dimensions=-1 !default, don't specify grid_ref |
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246 | ENDIF |
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247 | |
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248 | WRITE (missing_value,'(E9.3)') 1.e+20 |
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249 | WRITE (string_dimensions,'(I1)') number_dimensions |
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250 | SELECT CASE (number_dimensions) |
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251 | CASE (3) |
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252 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(variable%name)//'25h'//'" long_name="'//TRIM(variable%long_name)//' 25-hour mean'//'" unit="'//TRIM(variable%units)//'" default_value="'//TRIM(ADJUSTL(missing_value))//'" grid_ref="grid_T_3D" />' |
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253 | CASE (2) |
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254 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(variable%name)//'25h'//'" long_name="'//TRIM(variable%long_name)//' 25-hour mean'//'" unit="'//TRIM(variable%units)//'" default_value="'//TRIM(ADJUSTL(missing_value))//'" grid_ref="grid_T_2D"/>' |
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255 | CASE (0) |
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256 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(variable%name)//'25h'//'" long_name="'//TRIM(variable%long_name)//' 25-hour mean'//'" unit="'//TRIM(variable%units)//'" default_value="'//TRIM(ADJUSTL(missing_value))//'" grid_ref="1point"/>' |
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257 | CASE (-1) |
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258 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(variable%name)//'25h'//'" long_name="'//TRIM(variable%long_name)//' 25-hour mean'//'" unit="'//TRIM(variable%units)//'" default_value="'//TRIM(ADJUSTL(missing_value))//'" />' |
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259 | CASE default |
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260 | IF(lwp) WRITE(numout,*) ' trc_ini_fabm: Failing to initialise output of variable '//TRIM(variable%name)//'25h'//': Output of '//TRIM(ADJUSTL(string_dimensions))//'-dimensional variables not supported!!!' |
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261 | END SELECT |
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262 | |
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263 | END SUBROUTINE write_25hourm_xml |
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264 | |
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265 | SUBROUTINE write_tmb_xml(xml_unit,variable) |
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266 | INTEGER,INTENT(IN) :: xml_unit |
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267 | CLASS (type_external_variable),INTENT(IN) :: variable |
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268 | |
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269 | CHARACTER(LEN=20) :: missing_value |
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270 | |
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271 | WRITE (missing_value,'(E9.3)') 1.e+20 |
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272 | WRITE (xml_unit,'(A)') ' <field id="top_'//TRIM(variable%name)//'" long_name="Top-level '//TRIM(variable%long_name)//'" unit="'//TRIM(variable%units)//'" default_value="'//TRIM(ADJUSTL(missing_value))//'" grid_ref="grid_T_2D"/>' |
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273 | WRITE (xml_unit,'(A)') ' <field id="mid_'//TRIM(variable%name)//'" long_name="Middle-level '//TRIM(variable%long_name)//'" unit="'//TRIM(variable%units)//'" default_value="'//TRIM(ADJUSTL(missing_value))//'" grid_ref="grid_T_2D"/>' |
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274 | WRITE (xml_unit,'(A)') ' <field id="bot_'//TRIM(variable%name)//'" long_name="Bottom-level '//TRIM(variable%long_name)//'" unit="'//TRIM(variable%units)//'" default_value="'//TRIM(ADJUSTL(missing_value))//'" grid_ref="grid_T_2D"/>' |
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275 | |
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276 | END SUBROUTINE write_tmb_xml |
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277 | |
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278 | SUBROUTINE write_trends_xml(xml_unit,variable,flag_grid_ref) |
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279 | INTEGER,INTENT(IN) :: xml_unit |
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280 | INTEGER,INTENT(IN),OPTIONAL :: flag_grid_ref |
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281 | CLASS (type_external_variable),INTENT(IN) :: variable |
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282 | |
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283 | INTEGER :: number_dimensions,i |
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284 | CHARACTER(LEN=20) :: missing_value,string_dimensions |
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285 | #if defined key_tracer_budget |
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286 | CHARACTER(LEN=3),DIMENSION(10),PARAMETER :: trd_tags = (/ & |
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287 | 'LDF','BBL','FOR','ZDF','DMP','SMS','ATF', & |
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288 | 'RDB','RDN','VMV' /) |
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289 | CHARACTER(LEN=3),DIMENSION(3),PARAMETER :: trd_e3t_tags = (/ & |
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290 | 'XAD','YAD','ZAD' /) |
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291 | #else |
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292 | CHARACTER(LEN=3),DIMENSION(13),PARAMETER :: trd_tags = (/ & |
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293 | 'XAD','YAD','ZAD','LDF','BBL','FOR','ZDF','DMP','SMS','ATF', & |
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294 | 'RDB','RDN','VMV' /) |
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295 | #endif |
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296 | |
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297 | ! Check variable dimension for grid_ref specificaiton. |
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298 | ! Default is to not specify the grid_ref in the field definition. |
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299 | IF (present(flag_grid_ref)) THEN |
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300 | number_dimensions=flag_grid_ref |
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301 | ELSE |
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302 | number_dimensions=-1 !default, don't specify grid_ref |
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303 | ENDIF |
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304 | |
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305 | WRITE (missing_value,'(E9.3)') -2.E20 |
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306 | WRITE (string_dimensions,'(I1)') number_dimensions |
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307 | SELECT CASE (number_dimensions) |
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308 | CASE (3) |
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309 | DO i=1,size(trd_tags) |
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310 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(trd_tags(i))//'_'//TRIM(variable%name)//'" long_name="'// & |
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311 | & TRIM(variable%long_name)//' '//TRIM(trd_tags(i))//' trend" unit="'// & |
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312 | & TRIM(variable%units)//'/s" default_value="'// & |
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313 | & TRIM(ADJUSTL(missing_value))//'" grid_ref="grid_T_3D" />' |
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314 | END DO |
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315 | #if defined key_tracer_budget |
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316 | DO i=1,size(trd_e3t_tags) |
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317 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(trd_e3t_tags(i))//'_'//TRIM(variable%name)// & |
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318 | & '_e3t" long_name="'//TRIM(variable%long_name)//' cell depth integrated '// & |
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319 | & TRIM(trd_e3t_tags(i))//' trend" unit="'//TRIM(variable%units)//'/s" default_value="'// & |
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320 | & TRIM(ADJUSTL(missing_value))//'" grid_ref="grid_T_3D" />' |
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321 | END DO |
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322 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(variable%name)//'_e3t" long_name="'//TRIM(variable%long_name)// & |
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323 | & ' cell depth integrated" unit="'//TRIM(variable%units)//'/s" default_value="'// & |
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324 | & TRIM(ADJUSTL(missing_value))//'" grid_ref="grid_T_3D" />' |
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325 | #endif |
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326 | CASE (-1) |
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327 | DO i=1,size(trd_tags) |
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328 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(trd_tags(i))//'_'//TRIM(variable%name)//'" long_name="'// & |
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329 | & TRIM(variable%long_name)//' '//TRIM(trd_tags(i))//' trend" unit="'// & |
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330 | & TRIM(variable%units)//'/s" default_value="'//TRIM(ADJUSTL(missing_value))//'" />' |
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331 | END DO |
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332 | #if defined key_tracer_budget |
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333 | DO i=1,size(trd_e3t_tags) |
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334 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(trd_e3t_tags(i))//'_'//TRIM(variable%name)// & |
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335 | & '_e3t" long_name="'//TRIM(variable%long_name)//' cell depth integrated '// & |
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336 | & TRIM(trd_e3t_tags(i))//' trend" unit="'//TRIM(variable%units)//'/s" default_value="'// & |
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337 | & TRIM(ADJUSTL(missing_value))//'" />' |
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338 | END DO |
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339 | WRITE (xml_unit,'(A)') ' <field id="'//TRIM(variable%name)//'_e3t" long_name="'//TRIM(variable%long_name)// & |
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340 | & ' cell depth integrated" unit="'//TRIM(variable%units)//'/s" default_value="'// & |
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341 | & TRIM(ADJUSTL(missing_value))//'" />' |
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342 | #endif |
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343 | CASE default |
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344 | IF(lwp) WRITE(numout,*) ' trc_ini_fabm: Failing to initialise trends of variable '//TRIM(variable%name)// & |
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345 | & ': Output of '//TRIM(ADJUSTL(string_dimensions))//'-dimensional trends not supported!!!' |
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346 | END SELECT |
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347 | |
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348 | END SUBROUTINE write_trends_xml |
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349 | |
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350 | SUBROUTINE write_input_xml(xml_unit,variable,flag_grid_ref) |
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351 | INTEGER,INTENT(IN) :: xml_unit |
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352 | INTEGER,INTENT(IN),OPTIONAL :: flag_grid_ref |
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353 | CLASS(type_input_variable),POINTER,INTENT(IN) :: variable |
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354 | |
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355 | INTEGER :: number_dimensions,i |
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356 | CHARACTER(LEN=20) :: missing_value,string_dimensions |
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357 | |
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358 | ! Check variable dimension for grid_ref specificaiton. |
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359 | ! Default is to not specify the grid_ref in the field definition. |
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360 | IF (present(flag_grid_ref)) THEN |
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361 | number_dimensions=flag_grid_ref |
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362 | ELSE |
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363 | number_dimensions=-1 !default, don't specify grid_ref |
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364 | ENDIF |
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365 | |
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366 | WRITE (missing_value,'(E9.3)') -2.E20 |
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367 | WRITE (string_dimensions,'(I1)') number_dimensions |
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368 | SELECT CASE (number_dimensions) |
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369 | CASE (3) |
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370 | WRITE (xml_unit,'(A)') ' <field id="'//'INP_'//TRIM(variable%sf(1)%clvar)//'" long_name="'//TRIM(variable%sf(1)%clvar)//' input" unit="" default_value="'//TRIM(ADJUSTL(missing_value))//'" grid_ref="grid_T_3D" />' |
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371 | CASE (-1) |
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372 | WRITE (xml_unit,'(A)') ' <field id="'//'INP_'//TRIM(variable%sf(1)%clvar)//'" long_name="'//TRIM(variable%sf(1)%clvar)//' input" unit="" default_value="'//TRIM(ADJUSTL(missing_value))//'" />' |
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373 | CASE default |
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374 | IF(lwp) WRITE(numout,*) ' trc_ini_fabm: Failing to initialise input diagnostic of variable '//TRIM(variable%sf(1)%clvar)//': Output of '//TRIM(ADJUSTL(string_dimensions))//'-dimensional diagnostic not supported!!!' |
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375 | END SELECT |
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376 | |
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377 | END SUBROUTINE write_input_xml |
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378 | |
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379 | SUBROUTINE trc_ini_fabm |
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380 | !!---------------------------------------------------------------------- |
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381 | !! *** trc_ini_fabm *** |
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382 | !! |
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383 | !! ** Purpose : initialization for FABM model |
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384 | !! |
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385 | !! ** Method : - Read the namcfc namelist and check the parameter values |
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386 | !!---------------------------------------------------------------------- |
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387 | #if defined key_git_version |
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388 | TYPE (type_version),POINTER :: version |
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389 | #endif |
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390 | INTEGER :: jn |
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391 | |
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392 | ! ! Allocate FABM arrays |
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393 | IF( trc_sms_fabm_alloc() /= 0 ) CALL ctl_stop( 'STOP', 'trc_ini_fabm: unable to allocate FABM arrays' ) |
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394 | |
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395 | IF(lwp) WRITE(numout,*) |
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396 | IF(lwp) WRITE(numout,*) ' trc_ini_fabm: initialisation of FABM model' |
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397 | IF(lwp) WRITE(numout,*) ' ~~~~~~~~~~~~~~' |
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398 | #if defined key_git_version |
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399 | IF(lwp) WRITE(numout,*) ' NEMO version: ',git_commit_id,' (',git_branch_name,' branch)' |
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400 | IF(lwp) WRITE(numout,*) ' FABM version: ',fabm_commit_id,' (',fabm_branch_name,' branch)' |
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401 | #endif |
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402 | |
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403 | call fabm_initialize_library() |
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404 | #if defined key_git_version |
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405 | version => first_module_version |
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406 | |
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407 | do while (associated(version)) |
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408 | IF(lwp) WRITE(numout,*) ' '//trim(version%module_name)//' version: ',trim(version%version_string) |
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409 | version => version%next |
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410 | end do |
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411 | #endif |
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412 | |
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413 | ! Log mapping of FABM states: |
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414 | IF (lwp) THEN |
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415 | IF (jp_fabm.gt.0) WRITE(numout,*) " FABM tracers:" |
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416 | DO jn=1,jp_fabm |
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417 | WRITE(numout,*) " State",jn,":",trim(model%state_variables(jn)%name), & |
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418 | " (",trim(model%state_variables(jn)%long_name), & |
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419 | ") [",trim(model%state_variables(jn)%units),"]" |
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420 | ENDDO |
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421 | IF (jp_fabm_surface.gt.0) WRITE(numout,*) "FABM seasurface states:" |
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422 | DO jn=1,jp_fabm_surface |
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423 | WRITE(numout,*) " State",jn,":",trim(model%surface_state_variables(jn)%name), & |
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424 | " (",trim(model%surface_state_variables(jn)%long_name), & |
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425 | ") [",trim(model%surface_state_variables(jn)%units),"]" |
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426 | ENDDO |
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427 | IF (jp_fabm_bottom.gt.0) WRITE(numout,*) "FABM seafloor states:" |
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428 | DO jn=1,jp_fabm_bottom |
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429 | WRITE(numout,*) " State",jn,":",trim(model%bottom_state_variables(jn)%name), & |
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430 | " (",trim(model%bottom_state_variables(jn)%long_name), & |
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431 | ") [",trim(model%bottom_state_variables(jn)%units),"]" |
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432 | ENDDO |
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433 | ENDIF |
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434 | |
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435 | ! Initialise variables required for Hemmings et al. (2008) |
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436 | ! nitrogen balancing for chlorophyll data assimilation |
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437 | MLD_MAX(:,:) = 0.0 |
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438 | PGROW_AVG(:,:) = 0.0 |
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439 | PLOSS_AVG(:,:) = 0.0 |
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440 | PHYT_AVG(:,:) = 0.0 |
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441 | |
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442 | END SUBROUTINE trc_ini_fabm |
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443 | |
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444 | INTEGER FUNCTION fabm_state_index( state_name ) |
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445 | !!---------------------------------------------------------------------- |
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446 | !! *** fabm_state_index *** |
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447 | !! |
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448 | !! ** Purpose : return index of a given FABM state variable |
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449 | !! |
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450 | !! ** Method : - loop through state variables until found |
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451 | !!---------------------------------------------------------------------- |
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452 | |
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453 | IMPLICIT NONE |
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454 | |
---|
455 | CHARACTER(LEN=256), INTENT(IN) :: state_name |
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456 | |
---|
457 | INTEGER :: jn |
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458 | |
---|
459 | !!---------------------------------------------------------------------- |
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460 | |
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461 | fabm_state_index = -1 |
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462 | DO jn=1,jp_fabm |
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463 | IF (TRIM(model%state_variables(jn)%name) == TRIM(state_name)) THEN |
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464 | fabm_state_index = jn |
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465 | EXIT |
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466 | ENDIF |
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467 | END DO |
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468 | IF (fabm_state_index == -1) THEN |
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469 | CALL ctl_warn( 'Could not find '//TRIM(state_name)//' state variable' ) |
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470 | ELSE |
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471 | IF (lwp) WRITE(numout,*) 'Index for '//TRIM(state_name)//' is: ', fabm_state_index |
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472 | ENDIF |
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473 | |
---|
474 | END FUNCTION fabm_state_index |
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475 | |
---|
476 | INTEGER FUNCTION fabm_diag_index( diag_name ) |
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477 | !!---------------------------------------------------------------------- |
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478 | !! *** fabm_state_index *** |
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479 | !! |
---|
480 | !! ** Purpose : return index of a given FABM diagnostic variable |
---|
481 | !! |
---|
482 | !! ** Method : - loop through diagnostic variables until found |
---|
483 | !!---------------------------------------------------------------------- |
---|
484 | |
---|
485 | IMPLICIT NONE |
---|
486 | |
---|
487 | CHARACTER(LEN=256), INTENT(IN) :: diag_name |
---|
488 | |
---|
489 | INTEGER :: jn |
---|
490 | |
---|
491 | !!---------------------------------------------------------------------- |
---|
492 | |
---|
493 | fabm_diag_index = -1 |
---|
494 | DO jn = 1, SIZE(model%diagnostic_variables) |
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495 | IF (TRIM(model%diagnostic_variables(jn)%name) == TRIM(diag_name)) THEN |
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496 | fabm_diag_index = jn |
---|
497 | EXIT |
---|
498 | ENDIF |
---|
499 | END DO |
---|
500 | IF (fabm_diag_index == -1) THEN |
---|
501 | CALL ctl_warn( 'Could not find '//TRIM(diag_name)//' diagnostic' ) |
---|
502 | ELSE |
---|
503 | IF (lwp) WRITE(numout,*) 'Index for '//TRIM(diag_name)//' is: ', fabm_diag_index |
---|
504 | ENDIF |
---|
505 | |
---|
506 | END FUNCTION fabm_diag_index |
---|
507 | |
---|
508 | #else |
---|
509 | !!---------------------------------------------------------------------- |
---|
510 | !! Dummy module No FABM model |
---|
511 | !!---------------------------------------------------------------------- |
---|
512 | CONTAINS |
---|
513 | SUBROUTINE nemo_fabm_init |
---|
514 | END SUBROUTINE nemo_fabm_init |
---|
515 | |
---|
516 | SUBROUTINE trc_ini_fabm ! Empty routine |
---|
517 | END SUBROUTINE trc_ini_fabm |
---|
518 | #endif |
---|
519 | |
---|
520 | !!====================================================================== |
---|
521 | END MODULE trcini_fabm |
---|