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diaobs.F90 in branches/UKMO/dev_r4650_general_vert_coord_obsoper/NEMOGCM/NEMO/OPA_SRC/OBS – NEMO

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source: branches/UKMO/dev_r4650_general_vert_coord_obsoper/NEMOGCM/NEMO/OPA_SRC/OBS/diaobs.F90 @ 6326

Last change on this file since 6326 was 6326, checked in by kingr, 8 years ago
Manually merged sst bias correction code from branches/2014/dev_r4650_UKMO14.5_SST_BIAS_CORRECTION@r4768. Had merge issues when using branch directly, possibly due to svn keywords not having been fully cleared.
File size: 62.9 KB

Line
1	MODULE diaobs
2	!!======================================================================
3	!! * MODULE diaobs *
4	!! Observation diagnostics: Computation of the misfit between data and
5	!! their model equivalent
6	!!======================================================================
7
8	!!----------------------------------------------------------------------
9	!! 'key_diaobs' : Switch on the observation diagnostic computation
10	!!----------------------------------------------------------------------
11	!! dia_obs_init : Reading and prepare observations
12	!! dia_obs : Compute model equivalent to observations
13	!! dia_obs_wri : Write observational diagnostics
14	!! ini_date : Compute the initial date YYYYMMDD.HHMMSS
15	!! fin_date : Compute the final date YYYYMMDD.HHMMSS
16	!!----------------------------------------------------------------------
17	!! * Modules used
18	USE wrk_nemo ! Memory Allocation
19	USE par_kind ! Precision variables
20	USE in_out_manager ! I/O manager
21	USE par_oce
22	USE dom_oce ! Ocean space and time domain variables
23	USE obs_fbm, ONLY: ln_cl4 ! Class 4 diagnostic switch
24	USE obs_read_prof ! Reading and allocation of observations (Coriolis)
25	USE obs_read_sla ! Reading and allocation of SLA observations
26	USE obs_read_sst ! Reading and allocation of SST observations
27	USE obs_sstbias ! Bias correction routine for SST
28	USE obs_readmdt ! Reading and allocation of MDT for SLA.
29	USE obs_read_seaice ! Reading and allocation of Sea Ice observations
30	USE obs_read_vel ! Reading and allocation of velocity component observations
31	USE obs_prep ! Preparation of obs. (grid search etc).
32	USE obs_oper ! Observation operators
33	USE obs_write ! Writing of observation related diagnostics
34	USE obs_grid ! Grid searching
35	USE obs_read_altbias ! Bias treatment for altimeter
36	USE obs_profiles_def ! Profile data definitions
37	USE obs_profiles ! Profile data storage
38	USE obs_surf_def ! Surface data definitions
39	USE obs_sla ! SLA data storage
40	USE obs_sst ! SST data storage
41	USE obs_seaice ! Sea Ice data storage
42	USE obs_types ! Definitions for observation types
43	USE mpp_map ! MPP mapping
44	USE lib_mpp ! For ctl_warn/stop
45
46	IMPLICIT NONE
47
48	!! * Routine accessibility
49	PRIVATE
50	PUBLIC dia_obs_init, & ! Initialize and read observations
51	& dia_obs, & ! Compute model equivalent to observations
52	& dia_obs_wri, & ! Write model equivalent to observations
53	& dia_obs_dealloc ! Deallocate dia_obs data
54
55	!! * Shared Module variables
56	LOGICAL, PUBLIC, PARAMETER :: &
57	#if defined key_diaobs
58	& lk_diaobs = .TRUE. !: Logical switch for observation diangostics
59	#else
60	& lk_diaobs = .FALSE. !: Logical switch for observation diangostics
61	#endif
62
63	!! * Module variables
64	LOGICAL, PUBLIC :: ln_t3d !: Logical switch for temperature profiles
65	LOGICAL, PUBLIC :: ln_s3d !: Logical switch for salinity profiles
66	LOGICAL, PUBLIC :: ln_ena !: Logical switch for the ENACT data set
67	LOGICAL, PUBLIC :: ln_cor !: Logical switch for the Coriolis data set
68	LOGICAL, PUBLIC :: ln_profb !: Logical switch for profile feedback datafiles
69	LOGICAL, PUBLIC :: ln_sla !: Logical switch for sea level anomalies
70	LOGICAL, PUBLIC :: ln_sladt !: Logical switch for SLA from AVISO files
71	LOGICAL, PUBLIC :: ln_slafb !: Logical switch for SLA from feedback files
72	LOGICAL, PUBLIC :: ln_sst !: Logical switch for sea surface temperature
73	LOGICAL, PUBLIC :: ln_reysst !: Logical switch for Reynolds sea surface temperature
74	LOGICAL, PUBLIC :: ln_ghrsst !: Logical switch for GHRSST data
75	LOGICAL, PUBLIC :: ln_sstfb !: Logical switch for SST from feedback files
76	LOGICAL, PUBLIC :: ln_seaice !: Logical switch for sea ice concentration
77	LOGICAL, PUBLIC :: ln_vel3d !: Logical switch for velocity component (u,v) observations
78	LOGICAL, PUBLIC :: ln_velavcur !: Logical switch for raw daily averaged netCDF current meter vel. data
79	LOGICAL, PUBLIC :: ln_velhrcur !: Logical switch for raw high freq netCDF current meter vel. data
80	LOGICAL, PUBLIC :: ln_velavadcp !: Logical switch for raw daily averaged netCDF ADCP vel. data
81	LOGICAL, PUBLIC :: ln_velhradcp !: Logical switch for raw high freq netCDF ADCP vel. data
82	LOGICAL, PUBLIC :: ln_velfb !: Logical switch for velocities from feedback files
83	LOGICAL, PUBLIC :: ln_ssh !: Logical switch for sea surface height
84	LOGICAL, PUBLIC :: ln_sss !: Logical switch for sea surface salinity
85	LOGICAL, PUBLIC :: ln_sstnight !: Logical switch for night mean SST observations
86	LOGICAL, PUBLIC :: ln_nea !: Remove observations near land
87	LOGICAL, PUBLIC :: ln_altbias !: Logical switch for altimeter bias
88	LOGICAL, PUBLIC :: ln_ignmis !: Logical switch for ignoring missing files
89	LOGICAL, PUBLIC :: ln_s_at_t !: Logical switch to compute model S at T observations
90	LOGICAL, PUBLIC :: ln_sstbias !: Logical switch for bias corection of SST
91
92	REAL(KIND=dp), PUBLIC :: dobsini !: Observation window start date YYYYMMDD.HHMMSS
93	REAL(KIND=dp), PUBLIC :: dobsend !: Observation window end date YYYYMMDD.HHMMSS
94
95	INTEGER, PUBLIC :: n1dint !: Vertical interpolation method
96	INTEGER, PUBLIC :: n2dint !: Horizontal interpolation method
97
98	INTEGER, DIMENSION(imaxavtypes) :: &
99	& endailyavtypes !: ENACT data types which are daily average
100
101	INTEGER, PARAMETER :: MaxNumFiles = 1000
102	LOGICAL, DIMENSION(MaxNumFiles) :: &
103	& ln_profb_ena, & !: Is the feedback files from ENACT data ?
104	! !: If so use endailyavtypes
105	& ln_profb_enatim !: Change tim for 820 enact data set.
106
107	INTEGER, DIMENSION(MaxNumFiles), PUBLIC :: sstbias_type !SST bias type
108
109	LOGICAL, DIMENSION(MaxNumFiles) :: &
110	& ln_velfb_av !: Is the velocity feedback files daily average?
111	LOGICAL, DIMENSION(:), ALLOCATABLE :: &
112	& ld_enact !: Profile data is ENACT so use endailyavtypes
113	LOGICAL, DIMENSION(:), ALLOCATABLE :: &
114	& ld_velav !: Velocity data is daily averaged
115	LOGICAL, DIMENSION(:), ALLOCATABLE :: &
116	& ld_sstnight !: SST observation corresponds to night mean
117
118	!!----------------------------------------------------------------------
119	!! NEMO/OPA 3.3 , NEMO Consortium (2010)
120	!! $Id$
121	!! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
122	!!----------------------------------------------------------------------
123
124	!! * Substitutions
125	# include "domzgr_substitute.h90"
126	CONTAINS
127
128	SUBROUTINE dia_obs_init
129	!!----------------------------------------------------------------------
130	!! * ROUTINE dia_obs_init *
131	!!
132	!! ** Purpose : Initialize and read observations
133	!!
134	!! ** Method : Read the namelist and call reading routines
135	!!
136	!! ** Action : Read the namelist and call reading routines
137	!!
138	!! History :
139	!! ! 06-03 (K. Mogensen) Original code
140	!! ! 06-05 (A. Weaver) Reformatted
141	!! ! 06-10 (A. Weaver) Cleaning and add controls
142	!! ! 07-03 (K. Mogensen) General handling of profiles
143	!! ! 14-08 (J.While) Incorporated SST bias correction
144	!!----------------------------------------------------------------------
145
146	IMPLICIT NONE
147
148	!! * Local declarations
149	CHARACTER(len=128) :: enactfiles(MaxNumFiles)
150	CHARACTER(len=128) :: coriofiles(MaxNumFiles)
151	CHARACTER(len=128) :: profbfiles(MaxNumFiles)
152	CHARACTER(len=128) :: sstfiles(MaxNumFiles)
153	CHARACTER(len=128) :: sstfbfiles(MaxNumFiles)
154	CHARACTER(len=128) :: sstbias_files(MaxNumFiles)
155	CHARACTER(len=128) :: slafilesact(MaxNumFiles)
156	CHARACTER(len=128) :: slafilespas(MaxNumFiles)
157	CHARACTER(len=128) :: slafbfiles(MaxNumFiles)
158	CHARACTER(len=128) :: seaicefiles(MaxNumFiles)
159	CHARACTER(len=128) :: velcurfiles(MaxNumFiles)
160	CHARACTER(len=128) :: veladcpfiles(MaxNumFiles)
161	CHARACTER(len=128) :: velavcurfiles(MaxNumFiles)
162	CHARACTER(len=128) :: velhrcurfiles(MaxNumFiles)
163	CHARACTER(len=128) :: velavadcpfiles(MaxNumFiles)
164	CHARACTER(len=128) :: velhradcpfiles(MaxNumFiles)
165	CHARACTER(len=128) :: velfbfiles(MaxNumFiles)
166	CHARACTER(LEN=128) :: reysstname
167	CHARACTER(LEN=12) :: reysstfmt
168	CHARACTER(LEN=128) :: bias_file
169	CHARACTER(LEN=20) :: datestr=" ", timestr=" "
170	NAMELIST/namobs/ln_ena, ln_cor, ln_profb, ln_t3d, ln_s3d, &
171	& ln_sla, ln_sladt, ln_slafb, &
172	& ln_ssh, ln_sst, ln_sstfb, ln_sss, ln_nea, &
173	& enactfiles, coriofiles, profbfiles, &
174	& slafilesact, slafilespas, slafbfiles, &
175	& sstfiles, sstfbfiles, &
176	& ln_seaice, seaicefiles, &
177	& dobsini, dobsend, n1dint, n2dint, &
178	& nmsshc, mdtcorr, mdtcutoff, &
179	& ln_reysst, ln_ghrsst, reysstname, reysstfmt, &
180	& ln_sstnight, &
181	& ln_grid_search_lookup, &
182	& grid_search_file, grid_search_res, &
183	& ln_grid_global, bias_file, ln_altbias, &
184	& endailyavtypes, ln_s_at_t, ln_profb_ena, &
185	& ln_vel3d, ln_velavcur, velavcurfiles, &
186	& ln_velhrcur, velhrcurfiles, &
187	& ln_velavadcp, velavadcpfiles, &
188	& ln_velhradcp, velhradcpfiles, &
189	& ln_velfb, velfbfiles, ln_velfb_av, &
190	& ln_profb_enatim, ln_ignmis, ln_cl4, &
191	& ln_sstbias, sstbias_files
192
193	INTEGER :: jprofset
194	INTEGER :: jveloset
195	INTEGER :: jvar
196	INTEGER :: jnumenact
197	INTEGER :: jnumcorio
198	INTEGER :: jnumprofb
199	INTEGER :: jnumslaact
200	INTEGER :: jnumslapas
201	INTEGER :: jnumslafb
202	INTEGER :: jnumsst
203	INTEGER :: jnumsstfb
204	INTEGER :: jnumsstbias
205	INTEGER :: jnumseaice
206	INTEGER :: jnumvelavcur
207	INTEGER :: jnumvelhrcur
208	INTEGER :: jnumvelavadcp
209	INTEGER :: jnumvelhradcp
210	INTEGER :: jnumvelfb
211	INTEGER :: ji
212	INTEGER :: jset
213	INTEGER :: ios ! Local integer output status for namelist read
214	LOGICAL :: lmask(MaxNumFiles), ll_u3d, ll_v3d
215
216	!-----------------------------------------------------------------------
217	! Read namelist parameters
218	!-----------------------------------------------------------------------
219
220	!Initalise all values in namelist arrays
221	enactfiles(:) = ''
222	coriofiles(:) = ''
223	profbfiles(:) = ''
224	slafilesact(:) = ''
225	slafilespas(:) = ''
226	slafbfiles(:) = ''
227	sstfiles(:) = ''
228	sstfbfiles(:) = ''
229	seaicefiles(:) = ''
230	velcurfiles(:) = ''
231	veladcpfiles(:) = ''
232	velavcurfiles(:) = ''
233	velhrcurfiles(:) = ''
234	velavadcpfiles(:) = ''
235	velhradcpfiles(:) = ''
236	velfbfiles(:) = ''
237	velcurfiles(:) = ''
238	veladcpfiles(:) = ''
239	sstbias_files(:) = ''
240	endailyavtypes(:) = -1
241	endailyavtypes(1) = 820
242	ln_profb_ena(:) = .FALSE.
243	ln_profb_enatim(:) = .TRUE.
244	ln_velfb_av(:) = .FALSE.
245	ln_ignmis = .FALSE.
246
247	CALL ini_date( dobsini )
248	CALL fin_date( dobsend )
249
250	! Read Namelist namobs : control observation diagnostics
251	REWIND( numnam_ref ) ! Namelist namobs in reference namelist : Diagnostic: control observation
252	READ ( numnam_ref, namobs, IOSTAT = ios, ERR = 901)
253	901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namobs in reference namelist', lwp )
254
255	REWIND( numnam_cfg ) ! Namelist namobs in configuration namelist : Diagnostic: control observation
256	READ ( numnam_cfg, namobs, IOSTAT = ios, ERR = 902 )
257	902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namobs in configuration namelist', lwp )
258	IF(lwm) WRITE ( numond, namobs )
259
260	! Count number of files for each type
261	IF (ln_ena) THEN
262	lmask(:) = .FALSE.
263	WHERE (enactfiles(:) /= '') lmask(:) = .TRUE.
264	jnumenact = COUNT(lmask)
265	ENDIF
266	IF (ln_cor) THEN
267	lmask(:) = .FALSE.
268	WHERE (coriofiles(:) /= '') lmask(:) = .TRUE.
269	jnumcorio = COUNT(lmask)
270	ENDIF
271	IF (ln_profb) THEN
272	lmask(:) = .FALSE.
273	WHERE (profbfiles(:) /= '') lmask(:) = .TRUE.
274	jnumprofb = COUNT(lmask)
275	ENDIF
276	IF (ln_sladt) THEN
277	lmask(:) = .FALSE.
278	WHERE (slafilesact(:) /= '') lmask(:) = .TRUE.
279	jnumslaact = COUNT(lmask)
280	lmask(:) = .FALSE.
281	WHERE (slafilespas(:) /= '') lmask(:) = .TRUE.
282	jnumslapas = COUNT(lmask)
283	ENDIF
284	IF (ln_slafb) THEN
285	lmask(:) = .FALSE.
286	WHERE (slafbfiles(:) /= '') lmask(:) = .TRUE.
287	jnumslafb = COUNT(lmask)
288	lmask(:) = .FALSE.
289	ENDIF
290	IF (ln_ghrsst) THEN
291	lmask(:) = .FALSE.
292	WHERE (sstfiles(:) /= '') lmask(:) = .TRUE.
293	jnumsst = COUNT(lmask)
294	ENDIF
295	IF (ln_sstfb) THEN
296	lmask(:) = .FALSE.
297	WHERE (sstfbfiles(:) /= '') lmask(:) = .TRUE.
298	jnumsstfb = COUNT(lmask)
299	lmask(:) = .FALSE.
300	ENDIF
301	IF (ln_sstbias) THEN
302	lmask(:) = .FALSE.
303	WHERE (sstbias_files(:) /= '') lmask(:) = .TRUE.
304	jnumsstbias = COUNT(lmask)
305	lmask(:) = .FALSE.
306	ENDIF
307	IF (ln_seaice) THEN
308	lmask(:) = .FALSE.
309	WHERE (seaicefiles(:) /= '') lmask(:) = .TRUE.
310	jnumseaice = COUNT(lmask)
311	ENDIF
312	IF (ln_velavcur) THEN
313	lmask(:) = .FALSE.
314	WHERE (velavcurfiles(:) /= '') lmask(:) = .TRUE.
315	jnumvelavcur = COUNT(lmask)
316	ENDIF
317	IF (ln_velhrcur) THEN
318	lmask(:) = .FALSE.
319	WHERE (velhrcurfiles(:) /= '') lmask(:) = .TRUE.
320	jnumvelhrcur = COUNT(lmask)
321	ENDIF
322	IF (ln_velavadcp) THEN
323	lmask(:) = .FALSE.
324	WHERE (velavadcpfiles(:) /= '') lmask(:) = .TRUE.
325	jnumvelavadcp = COUNT(lmask)
326	ENDIF
327	IF (ln_velhradcp) THEN
328	lmask(:) = .FALSE.
329	WHERE (velhradcpfiles(:) /= '') lmask(:) = .TRUE.
330	jnumvelhradcp = COUNT(lmask)
331	ENDIF
332	IF (ln_velfb) THEN
333	lmask(:) = .FALSE.
334	WHERE (velfbfiles(:) /= '') lmask(:) = .TRUE.
335	jnumvelfb = COUNT(lmask)
336	lmask(:) = .FALSE.
337	ENDIF
338
339	! Control print
340	IF(lwp) THEN
341	WRITE(numout,*)
342	WRITE(numout,*) 'dia_obs_init : Observation diagnostic initialization'
343	WRITE(numout,*) '~~~~~~~~~~~~'
344	WRITE(numout,*) ' Namelist namobs : set observation diagnostic parameters'
345	WRITE(numout,*) ' Logical switch for T profile observations ln_t3d = ', ln_t3d
346	WRITE(numout,*) ' Logical switch for S profile observations ln_s3d = ', ln_s3d
347	WRITE(numout,*) ' Logical switch for ENACT insitu data set ln_ena = ', ln_ena
348	WRITE(numout,*) ' Logical switch for Coriolis insitu data set ln_cor = ', ln_cor
349	WRITE(numout,*) ' Logical switch for feedback insitu data set ln_profb = ', ln_profb
350	WRITE(numout,*) ' Logical switch for SLA observations ln_sla = ', ln_sla
351	WRITE(numout,*) ' Logical switch for AVISO SLA data ln_sladt = ', ln_sladt
352	WRITE(numout,*) ' Logical switch for feedback SLA data ln_slafb = ', ln_slafb
353	WRITE(numout,*) ' Logical switch for SSH observations ln_ssh = ', ln_ssh
354	WRITE(numout,*) ' Logical switch for SST observations ln_sst = ', ln_sst
355	WRITE(numout,*) ' Logical switch for Reynolds observations ln_reysst = ', ln_reysst
356	WRITE(numout,*) ' Logical switch for GHRSST observations ln_ghrsst = ', ln_ghrsst
357	WRITE(numout,*) ' Logical switch for feedback SST data ln_sstfb = ', ln_sstfb
358	WRITE(numout,*) ' Logical switch for SST bias correction ln_sstbias = ', ln_sstbias
359	WRITE(numout,*) ' Logical switch for night-time SST obs ln_sstnight = ', ln_sstnight
360	WRITE(numout,*) ' Logical switch for SSS observations ln_sss = ', ln_sss
361	WRITE(numout,*) ' Logical switch for Sea Ice observations ln_seaice = ', ln_seaice
362	WRITE(numout,*) ' Logical switch for velocity observations ln_vel3d = ', ln_vel3d
363	WRITE(numout,*) ' Logical switch for velocity daily av. cur. ln_velavcur = ', ln_velavcur
364	WRITE(numout,*) ' Logical switch for velocity high freq. cur. ln_velhrcur = ', ln_velhrcur
365	WRITE(numout,*) ' Logical switch for velocity daily av. ADCP ln_velavadcp = ', ln_velavadcp
366	WRITE(numout,*) ' Logical switch for velocity high freq. ADCP ln_velhradcp = ', ln_velhradcp
367	WRITE(numout,*) ' Logical switch for feedback velocity data ln_velfb = ', ln_velfb
368	WRITE(numout,*) ' Global distribtion of observations ln_grid_global = ',ln_grid_global
369	WRITE(numout,*) &
370	' Logical switch for obs grid search w/lookup table ln_grid_search_lookup = ',ln_grid_search_lookup
371	IF (ln_grid_search_lookup) &
372	WRITE(numout,*) ' Grid search lookup file header grid_search_file = ', grid_search_file
373	IF (ln_ena) THEN
374	DO ji = 1, jnumenact
375	WRITE(numout,'(1X,2A)') ' ENACT input observation file name enactfiles = ', &
376	TRIM(enactfiles(ji))
377	END DO
378	ENDIF
379	IF (ln_cor) THEN
380	DO ji = 1, jnumcorio
381	WRITE(numout,'(1X,2A)') ' Coriolis input observation file name coriofiles = ', &
382	TRIM(coriofiles(ji))
383	END DO
384	ENDIF
385	IF (ln_profb) THEN
386	DO ji = 1, jnumprofb
387	IF (ln_profb_ena(ji)) THEN
388	WRITE(numout,'(1X,2A)') ' Enact feedback input observation file name profbfiles = ', &
389	TRIM(profbfiles(ji))
390	ELSE
391	WRITE(numout,'(1X,2A)') ' Feedback input observation file name profbfiles = ', &
392	TRIM(profbfiles(ji))
393	ENDIF
394	WRITE(numout,'(1X,2A)') ' Enact feedback input time setting switch ln_profb_enatim = ', ln_profb_enatim(ji)
395	END DO
396	ENDIF
397	IF (ln_sladt) THEN
398	DO ji = 1, jnumslaact
399	WRITE(numout,'(1X,2A)') ' Active SLA input observation file name slafilesact = ', &
400	TRIM(slafilesact(ji))
401	END DO
402	DO ji = 1, jnumslapas
403	WRITE(numout,'(1X,2A)') ' Passive SLA input observation file name slafilespas = ', &
404	TRIM(slafilespas(ji))
405	END DO
406	ENDIF
407	IF (ln_slafb) THEN
408	DO ji = 1, jnumslafb
409	WRITE(numout,'(1X,2A)') ' Feedback SLA input observation file name slafbfiles = ', &
410	TRIM(slafbfiles(ji))
411	END DO
412	ENDIF
413	IF (ln_ghrsst) THEN
414	DO ji = 1, jnumsst
415	WRITE(numout,'(1X,2A)') ' GHRSST input observation file name sstfiles = ', &
416	TRIM(sstfiles(ji))
417	END DO
418	ENDIF
419	IF (ln_sstfb) THEN
420	DO ji = 1, jnumsstfb
421	WRITE(numout,'(1X,2A)') ' Feedback SST input observation file name sstfbfiles = ', &
422	TRIM(sstfbfiles(ji))
423	END DO
424	ENDIF
425	IF (ln_seaice) THEN
426	DO ji = 1, jnumseaice
427	WRITE(numout,'(1X,2A)') ' Sea Ice input observation file name seaicefiles = ', &
428	TRIM(seaicefiles(ji))
429	END DO
430	ENDIF
431	IF (ln_velavcur) THEN
432	DO ji = 1, jnumvelavcur
433	WRITE(numout,'(1X,2A)') ' Vel. cur. daily av. input file name velavcurfiles = ', &
434	TRIM(velavcurfiles(ji))
435	END DO
436	ENDIF
437	IF (ln_velhrcur) THEN
438	DO ji = 1, jnumvelhrcur
439	WRITE(numout,'(1X,2A)') ' Vel. cur. high freq. input file name velhvcurfiles = ', &
440	TRIM(velhrcurfiles(ji))
441	END DO
442	ENDIF
443	IF (ln_velavadcp) THEN
444	DO ji = 1, jnumvelavadcp
445	WRITE(numout,'(1X,2A)') ' Vel. ADCP daily av. input file name velavadcpfiles = ', &
446	TRIM(velavadcpfiles(ji))
447	END DO
448	ENDIF
449	IF (ln_velhradcp) THEN
450	DO ji = 1, jnumvelhradcp
451	WRITE(numout,'(1X,2A)') ' Vel. ADCP high freq. input file name velhvadcpfiles = ', &
452	TRIM(velhradcpfiles(ji))
453	END DO
454	ENDIF
455	IF (ln_velfb) THEN
456	DO ji = 1, jnumvelfb
457	IF (ln_velfb_av(ji)) THEN
458	WRITE(numout,'(1X,2A)') ' Vel. feedback daily av. input file name velfbfiles = ', &
459	TRIM(velfbfiles(ji))
460	ELSE
461	WRITE(numout,'(1X,2A)') ' Vel. feedback input observation file name velfbfiles = ', &
462	TRIM(velfbfiles(ji))
463	ENDIF
464	END DO
465	ENDIF
466	WRITE(numout,*) ' Initial date in window YYYYMMDD.HHMMSS dobsini = ', dobsini
467	WRITE(numout,*) ' Final date in window YYYYMMDD.HHMMSS dobsend = ', dobsend
468	WRITE(numout,*) ' Type of vertical interpolation method n1dint = ', n1dint
469	WRITE(numout,*) ' Type of horizontal interpolation method n2dint = ', n2dint
470	WRITE(numout,*) ' Rejection of observations near land swithch ln_nea = ', ln_nea
471	WRITE(numout,*) ' MSSH correction scheme nmsshc = ', nmsshc
472	WRITE(numout,*) ' MDT correction mdtcorr = ', mdtcorr
473	WRITE(numout,*) ' MDT cutoff for computed correction mdtcutoff = ', mdtcutoff
474	WRITE(numout,*) ' Logical switch for alt bias ln_altbias = ', ln_altbias
475	WRITE(numout,*) ' Logical switch for ignoring missing files ln_ignmis = ', ln_ignmis
476	WRITE(numout,*) ' ENACT daily average types = ',endailyavtypes
477
478	ENDIF
479
480	IF ( ln_vel3d .AND. ( .NOT. ln_grid_global ) ) THEN
481	CALL ctl_stop( 'Velocity data only works with ln_grid_global=.true.' )
482	RETURN
483	ENDIF
484
485	CALL obs_typ_init
486
487	CALL mppmap_init
488
489	! Parameter control
490	#if defined key_diaobs
491	IF ( ( .NOT. ln_t3d ).AND.( .NOT. ln_s3d ).AND.( .NOT. ln_sla ).AND. &
492	& ( .NOT. ln_vel3d ).AND. &
493	& ( .NOT. ln_ssh ).AND.( .NOT. ln_sst ).AND.( .NOT. ln_sss ).AND. &
494	& ( .NOT. ln_seaice ).AND.( .NOT. ln_vel3d ) ) THEN
495	IF(lwp) WRITE(numout,cform_war)
496	IF(lwp) WRITE(numout,*) ' key_diaobs is activated but logical flags', &
497	& ' ln_t3d, ln_s3d, ln_sla, ln_ssh, ln_sst, ln_sss, ln_seaice, ln_vel3d are all set to .FALSE.'
498	nwarn = nwarn + 1
499	ENDIF
500	#endif
501
502	CALL obs_grid_setup( )
503	IF ( ( n1dint < 0 ).OR.( n1dint > 1 ) ) THEN
504	CALL ctl_stop(' Choice of vertical (1D) interpolation method', &
505	& ' is not available')
506	ENDIF
507	IF ( ( n2dint < 0 ).OR.( n2dint > 4 ) ) THEN
508	CALL ctl_stop(' Choice of horizontal (2D) interpolation method', &
509	& ' is not available')
510	ENDIF
511
512	!-----------------------------------------------------------------------
513	! Depending on switches read the various observation types
514	!-----------------------------------------------------------------------
515	! - Temperature/salinity profiles
516
517	IF ( ln_t3d .OR. ln_s3d ) THEN
518
519	! Set the number of variables for profiles to 2 (T and S)
520	nprofvars = 2
521	! Set the number of extra variables for profiles to 1 (insitu temp).
522	nprofextr = 1
523
524	! Count how may insitu data sets we have and allocate data.
525	jprofset = 0
526	IF ( ln_ena ) jprofset = jprofset + 1
527	IF ( ln_cor ) jprofset = jprofset + 1
528	IF ( ln_profb ) jprofset = jprofset + jnumprofb
529	nprofsets = jprofset
530	IF ( nprofsets > 0 ) THEN
531	ALLOCATE(ld_enact(nprofsets))
532	ALLOCATE(profdata(nprofsets))
533	ALLOCATE(prodatqc(nprofsets))
534	ENDIF
535
536	jprofset = 0
537
538	! ENACT insitu data
539
540	IF ( ln_ena ) THEN
541
542	jprofset = jprofset + 1
543
544	ld_enact(jprofset) = .TRUE.
545
546	CALL obs_rea_pro_dri( 1, profdata(jprofset), &
547	& jnumenact, enactfiles(1:jnumenact), &
548	& nprofvars, nprofextr, &
549	& nitend-nit000+2, &
550	& dobsini, dobsend, ln_t3d, ln_s3d, &
551	& ln_ignmis, ln_s_at_t, .TRUE., .FALSE., &
552	& kdailyavtypes = endailyavtypes )
553
554	DO jvar = 1, 2
555
556	CALL obs_prof_staend( profdata(jprofset), jvar )
557
558	END DO
559
560	CALL obs_pre_pro( profdata(jprofset), prodatqc(jprofset), &
561	& ln_t3d, ln_s3d, ln_nea, &
562	& kdailyavtypes=endailyavtypes )
563
564	ENDIF
565
566	! Coriolis insitu data
567
568	IF ( ln_cor ) THEN
569
570	jprofset = jprofset + 1
571
572	ld_enact(jprofset) = .FALSE.
573
574	CALL obs_rea_pro_dri( 2, profdata(jprofset), &
575	& jnumcorio, coriofiles(1:jnumcorio), &
576	& nprofvars, nprofextr, &
577	& nitend-nit000+2, &
578	& dobsini, dobsend, ln_t3d, ln_s3d, &
579	& ln_ignmis, ln_s_at_t, .FALSE., .FALSE. )
580
581	DO jvar = 1, 2
582
583	CALL obs_prof_staend( profdata(jprofset), jvar )
584
585	END DO
586
587	CALL obs_pre_pro( profdata(jprofset), prodatqc(jprofset), &
588	& ln_t3d, ln_s3d, ln_nea )
589
590	ENDIF
591
592	! Feedback insitu data
593
594	IF ( ln_profb ) THEN
595
596	DO jset = 1, jnumprofb
597
598	jprofset = jprofset + 1
599	ld_enact (jprofset) = ln_profb_ena(jset)
600
601	CALL obs_rea_pro_dri( 0, profdata(jprofset), &
602	& 1, profbfiles(jset:jset), &
603	& nprofvars, nprofextr, &
604	& nitend-nit000+2, &
605	& dobsini, dobsend, ln_t3d, ln_s3d, &
606	& ln_ignmis, ln_s_at_t, &
607	& ld_enact(jprofset).AND.&
608	& ln_profb_enatim(jset), &
609	& .FALSE., kdailyavtypes = endailyavtypes )
610
611	DO jvar = 1, 2
612
613	CALL obs_prof_staend( profdata(jprofset), jvar )
614
615	END DO
616
617	IF ( ld_enact(jprofset) ) THEN
618	CALL obs_pre_pro( profdata(jprofset), prodatqc(jprofset), &
619	& ln_t3d, ln_s3d, ln_nea, &
620	& kdailyavtypes = endailyavtypes )
621	ELSE
622	CALL obs_pre_pro( profdata(jprofset), prodatqc(jprofset), &
623	& ln_t3d, ln_s3d, ln_nea )
624	ENDIF
625
626	END DO
627
628	ENDIF
629
630	ENDIF
631
632	! - Sea level anomalies
633	IF ( ln_sla ) THEN
634	! Set the number of variables for sla to 1
635	nslavars = 1
636
637	! Set the number of extra variables for sla to 2
638	nslaextr = 2
639
640	! Set the number of sla data sets to 2
641	nslasets = 0
642	IF ( ln_sladt ) THEN
643	nslasets = nslasets + 2
644	ENDIF
645	IF ( ln_slafb ) THEN
646	nslasets = nslasets + jnumslafb
647	ENDIF
648
649	ALLOCATE(sladata(nslasets))
650	ALLOCATE(sladatqc(nslasets))
651	sladata(:)%nsurf=0
652	sladatqc(:)%nsurf=0
653
654	nslasets = 0
655
656	! AVISO SLA data
657
658	IF ( ln_sladt ) THEN
659
660	! Active SLA observations
661
662	nslasets = nslasets + 1
663
664	CALL obs_rea_sla( 1, sladata(nslasets), jnumslaact, &
665	& slafilesact(1:jnumslaact), &
666	& nslavars, nslaextr, nitend-nit000+2, &
667	& dobsini, dobsend, ln_ignmis, .FALSE. )
668	CALL obs_pre_sla( sladata(nslasets), sladatqc(nslasets), &
669	& ln_sla, ln_nea )
670
671	! Passive SLA observations
672
673	nslasets = nslasets + 1
674
675	CALL obs_rea_sla( 1, sladata(nslasets), jnumslapas, &
676	& slafilespas(1:jnumslapas), &
677	& nslavars, nslaextr, nitend-nit000+2, &
678	& dobsini, dobsend, ln_ignmis, .FALSE. )
679
680	CALL obs_pre_sla( sladata(nslasets), sladatqc(nslasets), &
681	& ln_sla, ln_nea )
682
683	ENDIF
684
685	! Feedback SLA data
686
687	IF ( ln_slafb ) THEN
688
689	DO jset = 1, jnumslafb
690
691	nslasets = nslasets + 1
692
693	CALL obs_rea_sla( 0, sladata(nslasets), 1, &
694	& slafbfiles(jset:jset), &
695	& nslavars, nslaextr, nitend-nit000+2, &
696	& dobsini, dobsend, ln_ignmis, .FALSE. )
697	CALL obs_pre_sla( sladata(nslasets), sladatqc(nslasets), &
698	& ln_sla, ln_nea )
699
700	END DO
701
702	ENDIF
703
704	CALL obs_rea_mdt( nslasets, sladatqc, n2dint )
705
706	! read in altimeter bias
707
708	IF ( ln_altbias ) THEN
709	CALL obs_rea_altbias ( nslasets, sladatqc, n2dint, bias_file )
710	ENDIF
711
712	ENDIF
713
714	! - Sea surface height
715	IF ( ln_ssh ) THEN
716	IF(lwp) WRITE(numout,*) ' SSH currently not available'
717	ENDIF
718
719	! - Sea surface temperature
720	IF ( ln_sst ) THEN
721
722	! Set the number of variables for sst to 1
723	nsstvars = 1
724
725	! Set the number of extra variables for sst to 0
726	nsstextr = 0
727
728	nsstsets = 0
729
730	IF (ln_reysst) nsstsets = nsstsets + 1
731	IF (ln_ghrsst) nsstsets = nsstsets + 1
732	IF ( ln_sstfb ) THEN
733	nsstsets = nsstsets + jnumsstfb
734	ENDIF
735
736	ALLOCATE(sstdata(nsstsets))
737	ALLOCATE(sstdatqc(nsstsets))
738	ALLOCATE(ld_sstnight(nsstsets))
739	sstdata(:)%nsurf=0
740	sstdatqc(:)%nsurf=0
741	ld_sstnight(:)=.false.
742
743	nsstsets = 0
744
745	IF (ln_reysst) THEN
746
747	nsstsets = nsstsets + 1
748
749	ld_sstnight(nsstsets) = ln_sstnight
750
751	CALL obs_rea_sst_rey( reysstname, reysstfmt, sstdata(nsstsets), &
752	& nsstvars, nsstextr, &
753	& nitend-nit000+2, dobsini, dobsend )
754	CALL obs_pre_sst( sstdata(nsstsets), sstdatqc(nsstsets), ln_sst, &
755	& ln_nea )
756
757	ENDIF
758
759	IF (ln_ghrsst) THEN
760
761	nsstsets = nsstsets + 1
762
763	ld_sstnight(nsstsets) = ln_sstnight
764
765	CALL obs_rea_sst( 1, sstdata(nsstsets), jnumsst, &
766	& sstfiles(1:jnumsst), &
767	& nsstvars, nsstextr, nitend-nit000+2, &
768	& dobsini, dobsend, ln_ignmis, .FALSE. )
769	CALL obs_pre_sst( sstdata(nsstsets), sstdatqc(nsstsets), ln_sst, &
770	& ln_nea )
771
772	ENDIF
773
774	! Feedback SST data
775
776	IF ( ln_sstfb ) THEN
777
778	DO jset = 1, jnumsstfb
779
780	nsstsets = nsstsets + 1
781
782	ld_sstnight(nsstsets) = ln_sstnight
783
784	CALL obs_rea_sst( 0, sstdata(nsstsets), 1, &
785	& sstfbfiles(jset:jset), &
786	& nsstvars, nsstextr, nitend-nit000+2, &
787	& dobsini, dobsend, ln_ignmis, .FALSE. )
788	CALL obs_pre_sst( sstdata(nsstsets), sstdatqc(nsstsets), &
789	& ln_sst, ln_nea )
790
791	END DO
792
793	ENDIF
794
795	!Read in bias field and correct SST.
796	IF ( ln_sstbias ) THEN
797	IF ( jnumsstbias == 0 ) CALL ctl_stop("ln_sstbias set,"// &
798	" but no bias"// &
799	" files to read in")
800	CALL obs_app_sstbias( nsstsets, sstdatqc, n2dint, &
801	jnumsstbias, &
802	sstbias_files(1:jnumsstbias) )
803	ENDIF
804
805	ENDIF
806
807	! - Sea surface salinity
808	IF ( ln_sss ) THEN
809	IF(lwp) WRITE(numout,*) ' SSS currently not available'
810	ENDIF
811
812	! - Sea Ice Concentration
813
814	IF ( ln_seaice ) THEN
815
816	! Set the number of variables for seaice to 1
817	nseaicevars = 1
818
819	! Set the number of extra variables for seaice to 0
820	nseaiceextr = 0
821
822	! Set the number of data sets to 1
823	nseaicesets = 1
824
825	ALLOCATE(seaicedata(nseaicesets))
826	ALLOCATE(seaicedatqc(nseaicesets))
827	seaicedata(:)%nsurf=0
828	seaicedatqc(:)%nsurf=0
829
830	CALL obs_rea_seaice( 1, seaicedata(nseaicesets), jnumseaice, &
831	& seaicefiles(1:jnumseaice), &
832	& nseaicevars, nseaiceextr, nitend-nit000+2, &
833	& dobsini, dobsend, ln_ignmis, .FALSE. )
834
835	CALL obs_pre_seaice( seaicedata(nseaicesets), seaicedatqc(nseaicesets), &
836	& ln_seaice, ln_nea )
837
838	ENDIF
839
840	IF (ln_vel3d) THEN
841
842	! Set the number of variables for profiles to 2 (U and V)
843	nvelovars = 2
844
845	! Set the number of extra variables for profiles to 2 to store
846	! rotation parameters
847	nveloextr = 2
848
849	jveloset = 0
850
851	IF ( ln_velavcur ) jveloset = jveloset + 1
852	IF ( ln_velhrcur ) jveloset = jveloset + 1
853	IF ( ln_velavadcp ) jveloset = jveloset + 1
854	IF ( ln_velhradcp ) jveloset = jveloset + 1
855	IF (ln_velfb) jveloset = jveloset + jnumvelfb
856
857	nvelosets = jveloset
858	IF ( nvelosets > 0 ) THEN
859	ALLOCATE( velodata(nvelosets) )
860	ALLOCATE( veldatqc(nvelosets) )
861	ALLOCATE( ld_velav(nvelosets) )
862	ENDIF
863
864	jveloset = 0
865
866	! Daily averaged data
867
868	IF ( ln_velavcur ) THEN
869
870	jveloset = jveloset + 1
871
872	ld_velav(jveloset) = .TRUE.
873
874	CALL obs_rea_vel_dri( 1, velodata(jveloset), jnumvelavcur, &
875	& velavcurfiles(1:jnumvelavcur), &
876	& nvelovars, nveloextr, &
877	& nitend-nit000+2, &
878	& dobsini, dobsend, ln_ignmis, &
879	& ld_velav(jveloset), &
880	& .FALSE. )
881
882	DO jvar = 1, 2
883	CALL obs_prof_staend( velodata(jveloset), jvar )
884	END DO
885
886	CALL obs_pre_vel( velodata(jveloset), veldatqc(jveloset), &
887	& ln_vel3d, ln_nea, ld_velav(jveloset) )
888
889	ENDIF
890
891	! High frequency data
892
893	IF ( ln_velhrcur ) THEN
894
895	jveloset = jveloset + 1
896
897	ld_velav(jveloset) = .FALSE.
898
899	CALL obs_rea_vel_dri( 1, velodata(jveloset), jnumvelhrcur, &
900	& velhrcurfiles(1:jnumvelhrcur), &
901	& nvelovars, nveloextr, &
902	& nitend-nit000+2, &
903	& dobsini, dobsend, ln_ignmis, &
904	& ld_velav(jveloset), &
905	& .FALSE. )
906
907	DO jvar = 1, 2
908	CALL obs_prof_staend( velodata(jveloset), jvar )
909	END DO
910
911	CALL obs_pre_vel( velodata(jveloset), veldatqc(jveloset), &
912	& ln_vel3d, ln_nea, ld_velav(jveloset) )
913
914	ENDIF
915
916	! Daily averaged data
917
918	IF ( ln_velavadcp ) THEN
919
920	jveloset = jveloset + 1
921
922	ld_velav(jveloset) = .TRUE.
923
924	CALL obs_rea_vel_dri( 1, velodata(jveloset), jnumvelavadcp, &
925	& velavadcpfiles(1:jnumvelavadcp), &
926	& nvelovars, nveloextr, &
927	& nitend-nit000+2, &
928	& dobsini, dobsend, ln_ignmis, &
929	& ld_velav(jveloset), &
930	& .FALSE. )
931
932	DO jvar = 1, 2
933	CALL obs_prof_staend( velodata(jveloset), jvar )
934	END DO
935
936	CALL obs_pre_vel( velodata(jveloset), veldatqc(jveloset), &
937	& ln_vel3d, ln_nea, ld_velav(jveloset) )
938
939	ENDIF
940
941	! High frequency data
942
943	IF ( ln_velhradcp ) THEN
944
945	jveloset = jveloset + 1
946
947	ld_velav(jveloset) = .FALSE.
948
949	CALL obs_rea_vel_dri( 1, velodata(jveloset), jnumvelhradcp, &
950	& velhradcpfiles(1:jnumvelhradcp), &
951	& nvelovars, nveloextr, &
952	& nitend-nit000+2, &
953	& dobsini, dobsend, ln_ignmis, &
954	& ld_velav(jveloset), &
955	& .FALSE. )
956
957	DO jvar = 1, 2
958	CALL obs_prof_staend( velodata(jveloset), jvar )
959	END DO
960
961	CALL obs_pre_vel( velodata(jveloset), veldatqc(jveloset), &
962	& ln_vel3d, ln_nea, ld_velav(jveloset) )
963
964	ENDIF
965
966	IF ( ln_velfb ) THEN
967
968	DO jset = 1, jnumvelfb
969
970	jveloset = jveloset + 1
971
972	ld_velav(jveloset) = ln_velfb_av(jset)
973
974	CALL obs_rea_vel_dri( 0, velodata(jveloset), 1, &
975	& velfbfiles(jset:jset), &
976	& nvelovars, nveloextr, &
977	& nitend-nit000+2, &
978	& dobsini, dobsend, ln_ignmis, &
979	& ld_velav(jveloset), &
980	& .FALSE. )
981
982	DO jvar = 1, 2
983	CALL obs_prof_staend( velodata(jveloset), jvar )
984	END DO
985
986	CALL obs_pre_vel( velodata(jveloset), veldatqc(jveloset), &
987	& ln_vel3d, ln_nea, ld_velav(jveloset) )
988
989
990	END DO
991
992	ENDIF
993
994	ENDIF
995
996	END SUBROUTINE dia_obs_init
997
998	SUBROUTINE dia_obs( kstp )
999	!!----------------------------------------------------------------------
1000	!! * ROUTINE dia_obs *
1001	!!
1002	!! ** Purpose : Call the observation operators on each time step
1003	!!
1004	!! ** Method : Call the observation operators on each time step to
1005	!! compute the model equivalent of the following date:
1006	!! - T profiles
1007	!! - S profiles
1008	!! - Sea surface height (referenced to a mean)
1009	!! - Sea surface temperature
1010	!! - Sea surface salinity
1011	!! - Velocity component (U,V) profiles
1012	!!
1013	!! ** Action :
1014	!!
1015	!! History :
1016	!! ! 06-03 (K. Mogensen) Original code
1017	!! ! 06-05 (K. Mogensen) Reformatted
1018	!! ! 06-10 (A. Weaver) Cleaning
1019	!! ! 07-03 (K. Mogensen) General handling of profiles
1020	!! ! 07-04 (G. Smith) Generalized surface operators
1021	!! ! 08-10 (M. Valdivieso) obs operator for velocity profiles
1022	!! ! 14-08 (J. While) observation operator for profiles in
1023	!! generalised vertical coordinates
1024	!!----------------------------------------------------------------------
1025	!! * Modules used
1026	USE dom_oce, ONLY : & ! Ocean space and time domain variables
1027	& rdt, &
1028	& gdept_1d, &
1029	#if defined key_vvl
1030	& gdept_n, &
1031	#else
1032	& gdept_1d, &
1033	#endif
1034	& tmask, umask, vmask
1035	USE phycst, ONLY : & ! Physical constants
1036	& rday
1037	USE oce, ONLY : & ! Ocean dynamics and tracers variables
1038	& tsn, &
1039	& un, vn, &
1040	& sshn
1041	#if defined key_lim3
1042	USE ice, ONLY : & ! LIM Ice model variables
1043	& frld
1044	#endif
1045	#if defined key_lim2
1046	USE ice_2, ONLY : & ! LIM Ice model variables
1047	& frld
1048	#endif
1049	IMPLICIT NONE
1050
1051	!! * Arguments
1052	INTEGER, INTENT(IN) :: kstp ! Current timestep
1053	!! * Local declarations
1054	INTEGER :: idaystp ! Number of timesteps per day
1055	INTEGER :: jprofset ! Profile data set loop variable
1056	INTEGER :: jslaset ! SLA data set loop variable
1057	INTEGER :: jsstset ! SST data set loop variable
1058	INTEGER :: jseaiceset ! sea ice data set loop variable
1059	INTEGER :: jveloset ! velocity profile data loop variable
1060	INTEGER :: jvar ! Variable number
1061	#if ! defined key_lim2 && ! defined key_lim3
1062	REAL(wp), POINTER, DIMENSION(:,:) :: frld
1063	#endif
1064	CHARACTER(LEN=20) :: datestr=" ",timestr=" "
1065
1066	#if ! defined key_lim2 && ! defined key_lim3
1067	CALL wrk_alloc(jpi,jpj,frld)
1068	#endif
1069
1070	IF(lwp) THEN
1071	WRITE(numout,*)
1072	WRITE(numout,*) 'dia_obs : Call the observation operators', kstp
1073	WRITE(numout,*) '~~~~~~~'
1074	ENDIF
1075
1076	idaystp = NINT( rday / rdt )
1077
1078	!-----------------------------------------------------------------------
1079	! No LIM => frld == 0.0_wp
1080	!-----------------------------------------------------------------------
1081	#if ! defined key_lim2 && ! defined key_lim3
1082	frld(:,:) = 0.0_wp
1083	#endif
1084	!-----------------------------------------------------------------------
1085	! Depending on switches call various observation operators
1086	!-----------------------------------------------------------------------
1087
1088	! - Temperature/salinity profiles
1089	IF ( ln_t3d .OR. ln_s3d ) THEN
1090	DO jprofset = 1, nprofsets
1091	IF( (.NOT. lk_vvl) .AND. (ln_zco .OR. ln_zps) ) THEN
1092	IF(lwp) THEN
1093	WRITE(numout,*) 'dia_obs : calling obs_pro_opt'
1094	ENDIF
1095	IF ( ld_enact(jprofset) ) THEN
1096	CALL obs_pro_opt( prodatqc(jprofset), &
1097	& kstp, jpi, jpj, jpk, nit000, idaystp, &
1098	& tsn(:,:,:,jp_tem), tsn(:,:,:,jp_sal), &
1099	& gdept_1d, tmask, n1dint, n2dint, &
1100	& kdailyavtypes = endailyavtypes )
1101	ELSE
1102	CALL obs_pro_opt( prodatqc(jprofset), &
1103	& kstp, jpi, jpj, jpk, nit000, idaystp, &
1104	& tsn(:,:,:,jp_tem), tsn(:,:,:,jp_sal), &
1105	& gdept_1d, tmask, n1dint, n2dint )
1106	ENDIF
1107	ELSE
1108	IF(lwp) THEN
1109	WRITE(numout,*) 'dia_obs : calling obs_pro_sco_opt'
1110	ENDIF
1111	IF ( ld_enact(jprofset) ) THEN
1112	CALL obs_pro_sco_opt( prodatqc(jprofset), &
1113	& kstp, jpi, jpj, jpk, nit000, idaystp, &
1114	& tsn(:,:,:,jp_tem), tsn(:,:,:,jp_sal), &
1115	& fsdept(:,:,:), fsdepw(:,:,:), &
1116	& tmask, n1dint, n2dint, &
1117	& kdailyavtypes = endailyavtypes )
1118	ELSE
1119	CALL obs_pro_sco_opt( prodatqc(jprofset), &
1120	& kstp, jpi, jpj, jpk, nit000, idaystp, &
1121	& tsn(:,:,:,jp_tem), tsn(:,:,:,jp_sal), &
1122	& fsdept(:,:,:), fsdepw(:,:,:), &
1123	& tmask, n1dint, n2dint )
1124	ENDIF
1125	ENDIF
1126	END DO
1127	ENDIF
1128
1129	! - Sea surface anomaly
1130	IF ( ln_sla ) THEN
1131	DO jslaset = 1, nslasets
1132	CALL obs_sla_opt( sladatqc(jslaset), &
1133	& kstp, jpi, jpj, nit000, sshn, &
1134	& tmask(:,:,1), n2dint )
1135	END DO
1136	ENDIF
1137
1138	! - Sea surface temperature
1139	IF ( ln_sst ) THEN
1140	DO jsstset = 1, nsstsets
1141	CALL obs_sst_opt( sstdatqc(jsstset), &
1142	& kstp, jpi, jpj, nit000, idaystp, &
1143	& tsn(:,:,1,jp_tem), tmask(:,:,1), &
1144	& n2dint, ld_sstnight(jsstset) )
1145	END DO
1146	ENDIF
1147
1148	! - Sea surface salinity
1149	IF ( ln_sss ) THEN
1150	IF(lwp) WRITE(numout,*) ' SSS currently not available'
1151	ENDIF
1152
1153	#if defined key_lim2 \|\| defined key_lim3
1154	IF ( ln_seaice ) THEN
1155	DO jseaiceset = 1, nseaicesets
1156	CALL obs_seaice_opt( seaicedatqc(jseaiceset), &
1157	& kstp, jpi, jpj, nit000, 1.-frld, &
1158	& tmask(:,:,1), n2dint )
1159	END DO
1160	ENDIF
1161	#endif
1162
1163	! - Velocity profiles
1164	IF ( ln_vel3d ) THEN
1165	DO jveloset = 1, nvelosets
1166	! zonal component of velocity
1167	CALL obs_vel_opt( veldatqc(jveloset), kstp, jpi, jpj, jpk, &
1168	& nit000, idaystp, un, vn, gdept_1d, umask, vmask, &
1169	n1dint, n2dint, ld_velav(jveloset) )
1170	END DO
1171	ENDIF
1172
1173	#if ! defined key_lim2 && ! defined key_lim3
1174	CALL wrk_dealloc(jpi,jpj,frld)
1175	#endif
1176
1177	END SUBROUTINE dia_obs
1178
1179	SUBROUTINE dia_obs_wri
1180	!!----------------------------------------------------------------------
1181	!! * ROUTINE dia_obs_wri *
1182	!!
1183	!! ** Purpose : Call observation diagnostic output routines
1184	!!
1185	!! ** Method : Call observation diagnostic output routines
1186	!!
1187	!! ** Action :
1188	!!
1189	!! History :
1190	!! ! 06-03 (K. Mogensen) Original code
1191	!! ! 06-05 (K. Mogensen) Reformatted
1192	!! ! 06-10 (A. Weaver) Cleaning
1193	!! ! 07-03 (K. Mogensen) General handling of profiles
1194	!! ! 08-09 (M. Valdivieso) Velocity component (U,V) profiles
1195	!!----------------------------------------------------------------------
1196	IMPLICIT NONE
1197
1198	!! * Local declarations
1199
1200	INTEGER :: jprofset ! Profile data set loop variable
1201	INTEGER :: jveloset ! Velocity data set loop variable
1202	INTEGER :: jslaset ! SLA data set loop variable
1203	INTEGER :: jsstset ! SST data set loop variable
1204	INTEGER :: jseaiceset ! Sea Ice data set loop variable
1205	INTEGER :: jset
1206	INTEGER :: jfbini
1207	CHARACTER(LEN=20) :: datestr=" ",timestr=" "
1208	CHARACTER(LEN=10) :: cdtmp
1209	!-----------------------------------------------------------------------
1210	! Depending on switches call various observation output routines
1211	!-----------------------------------------------------------------------
1212
1213	! - Temperature/salinity profiles
1214
1215	IF( ln_t3d .OR. ln_s3d ) THEN
1216
1217	! Copy data from prodatqc to profdata structures
1218	DO jprofset = 1, nprofsets
1219
1220	CALL obs_prof_decompress( prodatqc(jprofset), &
1221	& profdata(jprofset), .TRUE., numout )
1222
1223	END DO
1224
1225	! Write the profiles.
1226
1227	jprofset = 0
1228
1229	! ENACT insitu data
1230
1231	IF ( ln_ena ) THEN
1232
1233	jprofset = jprofset + 1
1234
1235	CALL obs_wri_p3d( 'enact', profdata(jprofset) )
1236
1237	ENDIF
1238
1239	! Coriolis insitu data
1240
1241	IF ( ln_cor ) THEN
1242
1243	jprofset = jprofset + 1
1244
1245	CALL obs_wri_p3d( 'corio', profdata(jprofset) )
1246
1247	ENDIF
1248
1249	! Feedback insitu data
1250
1251	IF ( ln_profb ) THEN
1252
1253	jfbini = jprofset + 1
1254
1255	DO jprofset = jfbini, nprofsets
1256
1257	jset = jprofset - jfbini + 1
1258	WRITE(cdtmp,'(A,I2.2)')'profb_',jset
1259	CALL obs_wri_p3d( cdtmp, profdata(jprofset) )
1260
1261	END DO
1262
1263	ENDIF
1264
1265	ENDIF
1266
1267	! - Sea surface anomaly
1268	IF ( ln_sla ) THEN
1269
1270	! Copy data from sladatqc to sladata structures
1271	DO jslaset = 1, nslasets
1272
1273	CALL obs_surf_decompress( sladatqc(jslaset), &
1274	& sladata(jslaset), .TRUE., numout )
1275
1276	END DO
1277
1278	jslaset = 0
1279
1280	! Write the AVISO SLA data
1281
1282	IF ( ln_sladt ) THEN
1283
1284	jslaset = 1
1285	CALL obs_wri_sla( 'aviso_act', sladata(jslaset) )
1286	jslaset = 2
1287	CALL obs_wri_sla( 'aviso_pas', sladata(jslaset) )
1288
1289	ENDIF
1290
1291	IF ( ln_slafb ) THEN
1292
1293	jfbini = jslaset + 1
1294
1295	DO jslaset = jfbini, nslasets
1296
1297	jset = jslaset - jfbini + 1
1298	WRITE(cdtmp,'(A,I2.2)')'slafb_',jset
1299	CALL obs_wri_sla( cdtmp, sladata(jslaset) )
1300
1301	END DO
1302
1303	ENDIF
1304
1305	ENDIF
1306
1307	! - Sea surface temperature
1308	IF ( ln_sst ) THEN
1309
1310	! Copy data from sstdatqc to sstdata structures
1311	DO jsstset = 1, nsstsets
1312
1313	CALL obs_surf_decompress( sstdatqc(jsstset), &
1314	& sstdata(jsstset), .TRUE., numout )
1315
1316	END DO
1317
1318	jsstset = 0
1319
1320	! Write the AVISO SST data
1321
1322	IF ( ln_reysst ) THEN
1323
1324	jsstset = jsstset + 1
1325	CALL obs_wri_sst( 'reynolds', sstdata(jsstset) )
1326
1327	ENDIF
1328
1329	IF ( ln_ghrsst ) THEN
1330
1331	jsstset = jsstset + 1
1332	CALL obs_wri_sst( 'ghr', sstdata(jsstset) )
1333
1334	ENDIF
1335
1336	IF ( ln_sstfb ) THEN
1337
1338	jfbini = jsstset + 1
1339
1340	DO jsstset = jfbini, nsstsets
1341
1342	jset = jsstset - jfbini + 1
1343	WRITE(cdtmp,'(A,I2.2)')'sstfb_',jset
1344	CALL obs_wri_sst( cdtmp, sstdata(jsstset) )
1345
1346	END DO
1347
1348	ENDIF
1349
1350	ENDIF
1351
1352	! - Sea surface salinity
1353	IF ( ln_sss ) THEN
1354	IF(lwp) WRITE(numout,*) ' SSS currently not available'
1355	ENDIF
1356
1357	! - Sea Ice Concentration
1358	IF ( ln_seaice ) THEN
1359
1360	! Copy data from seaicedatqc to seaicedata structures
1361	DO jseaiceset = 1, nseaicesets
1362
1363	CALL obs_surf_decompress( seaicedatqc(jseaiceset), &
1364	& seaicedata(jseaiceset), .TRUE., numout )
1365
1366	END DO
1367
1368	! Write the Sea Ice data
1369	DO jseaiceset = 1, nseaicesets
1370
1371	WRITE(cdtmp,'(A,I2.2)')'seaicefb_',jseaiceset
1372	CALL obs_wri_seaice( cdtmp, seaicedata(jseaiceset) )
1373
1374	END DO
1375
1376	ENDIF
1377
1378	! Velocity data
1379	IF( ln_vel3d ) THEN
1380
1381	! Copy data from veldatqc to velodata structures
1382	DO jveloset = 1, nvelosets
1383
1384	CALL obs_prof_decompress( veldatqc(jveloset), &
1385	& velodata(jveloset), .TRUE., numout )
1386
1387	END DO
1388
1389	! Write the profiles.
1390
1391	jveloset = 0
1392
1393	! Daily averaged data
1394
1395	IF ( ln_velavcur ) THEN
1396
1397	jveloset = jveloset + 1
1398
1399	CALL obs_wri_vel( 'velavcurr', velodata(jveloset), n2dint )
1400
1401	ENDIF
1402
1403	! High frequency data
1404
1405	IF ( ln_velhrcur ) THEN
1406
1407	jveloset = jveloset + 1
1408
1409	CALL obs_wri_vel( 'velhrcurr', velodata(jveloset), n2dint )
1410
1411	ENDIF
1412
1413	! Daily averaged data
1414
1415	IF ( ln_velavadcp ) THEN
1416
1417	jveloset = jveloset + 1
1418
1419	CALL obs_wri_vel( 'velavadcp', velodata(jveloset), n2dint )
1420
1421	ENDIF
1422
1423	! High frequency data
1424
1425	IF ( ln_velhradcp ) THEN
1426
1427	jveloset = jveloset + 1
1428
1429	CALL obs_wri_vel( 'velhradcp', velodata(jveloset), n2dint )
1430
1431	ENDIF
1432
1433	! Feedback velocity data
1434
1435	IF ( ln_velfb ) THEN
1436
1437	jfbini = jveloset + 1
1438
1439	DO jveloset = jfbini, nvelosets
1440
1441	jset = jveloset - jfbini + 1
1442	WRITE(cdtmp,'(A,I2.2)')'velfb_',jset
1443	CALL obs_wri_vel( cdtmp, velodata(jveloset), n2dint )
1444
1445	END DO
1446
1447	ENDIF
1448
1449	ENDIF
1450
1451	END SUBROUTINE dia_obs_wri
1452
1453	SUBROUTINE dia_obs_dealloc
1454	IMPLICIT NONE
1455	!!----------------------------------------------------------------------
1456	!! * ROUTINE dia_obs_dealloc *
1457	!!
1458	!! ** Purpose : To deallocate data to enable the obs_oper online loop.
1459	!! Specifically: dia_obs_init --> dia_obs --> dia_obs_wri
1460	!!
1461	!! ** Method : Clean up various arrays left behind by the obs_oper.
1462	!!
1463	!! ** Action :
1464	!!
1465	!!----------------------------------------------------------------------
1466	!! obs_grid deallocation
1467	CALL obs_grid_deallocate
1468
1469	!! diaobs deallocation
1470	IF ( nprofsets > 0 ) THEN
1471	DEALLOCATE(ld_enact, &
1472	& profdata, &
1473	& prodatqc)
1474	END IF
1475	IF ( ln_sla ) THEN
1476	DEALLOCATE(sladata, &
1477	& sladatqc)
1478	END IF
1479	IF ( ln_seaice ) THEN
1480	DEALLOCATE(sladata, &
1481	& sladatqc)
1482	END IF
1483	IF ( ln_sst ) THEN
1484	DEALLOCATE(sstdata, &
1485	& sstdatqc)
1486	END IF
1487	IF ( ln_vel3d ) THEN
1488	DEALLOCATE(ld_velav, &
1489	& velodata, &
1490	& veldatqc)
1491	END IF
1492	END SUBROUTINE dia_obs_dealloc
1493
1494	SUBROUTINE ini_date( ddobsini )
1495	!!----------------------------------------------------------------------
1496	!! * ROUTINE ini_date *
1497	!!
1498	!! ** Purpose : Get initial data in double precision YYYYMMDD.HHMMSS format
1499	!!
1500	!! ** Method : Get initial data in double precision YYYYMMDD.HHMMSS format
1501	!!
1502	!! ** Action : Get initial data in double precision YYYYMMDD.HHMMSS format
1503	!!
1504	!! History :
1505	!! ! 06-03 (K. Mogensen) Original code
1506	!! ! 06-05 (K. Mogensen) Reformatted
1507	!! ! 06-10 (A. Weaver) Cleaning
1508	!! ! 06-10 (G. Smith) Calculates initial date the same as method for final date
1509	!! ! 10-05 (D. Lea) Update to month length calculation for NEMO vn3.2
1510	!!----------------------------------------------------------------------
1511	USE phycst, ONLY : & ! Physical constants
1512	& rday
1513	! USE daymod, ONLY : & ! Time variables
1514	! & nmonth_len
1515	USE dom_oce, ONLY : & ! Ocean space and time domain variables
1516	& rdt
1517
1518	IMPLICIT NONE
1519
1520	!! * Arguments
1521	REAL(KIND=dp), INTENT(OUT) :: ddobsini ! Initial date in YYYYMMDD.HHMMSS
1522
1523	!! * Local declarations
1524	INTEGER :: iyea ! date - (year, month, day, hour, minute)
1525	INTEGER :: imon
1526	INTEGER :: iday
1527	INTEGER :: ihou
1528	INTEGER :: imin
1529	INTEGER :: imday ! Number of days in month.
1530	REAL(KIND=wp) :: zdayfrc ! Fraction of day
1531
1532	INTEGER, DIMENSION(12) :: imonth_len !: length in days of the months of the current year
1533
1534	!!----------------------------------------------------------------------
1535	!! Initial date initialization (year, month, day, hour, minute)
1536	!! (This assumes that the initial date is for 00z))
1537	!!----------------------------------------------------------------------
1538	iyea = ndate0 / 10000
1539	imon = ( ndate0 - iyea * 10000 ) / 100
1540	iday = ndate0 - iyea * 10000 - imon * 100
1541	ihou = 0
1542	imin = 0
1543
1544	!!----------------------------------------------------------------------
1545	!! Compute number of days + number of hours + min since initial time
1546	!!----------------------------------------------------------------------
1547	iday = iday + ( nit000 -1 ) * rdt / rday
1548	zdayfrc = ( nit000 -1 ) * rdt / rday
1549	zdayfrc = zdayfrc - aint(zdayfrc)
1550	ihou = int( zdayfrc * 24 )
1551	imin = int( (zdayfrc * 24 - ihou) * 60 )
1552
1553	!!-----------------------------------------------------------------------
1554	!! Convert number of days (iday) into a real date
1555	!!----------------------------------------------------------------------
1556
1557	CALL calc_month_len( iyea, imonth_len )
1558
1559	DO WHILE ( iday > imonth_len(imon) )
1560	iday = iday - imonth_len(imon)
1561	imon = imon + 1
1562	IF ( imon > 12 ) THEN
1563	imon = 1
1564	iyea = iyea + 1
1565	CALL calc_month_len( iyea, imonth_len ) ! update month lengths
1566	ENDIF
1567	END DO
1568
1569	!!----------------------------------------------------------------------
1570	!! Convert it into YYYYMMDD.HHMMSS format.
1571	!!----------------------------------------------------------------------
1572	ddobsini = iyea * 10000_dp + imon * 100_dp + &
1573	& iday + ihou * 0.01_dp + imin * 0.0001_dp
1574
1575
1576	END SUBROUTINE ini_date
1577
1578	SUBROUTINE fin_date( ddobsfin )
1579	!!----------------------------------------------------------------------
1580	!! * ROUTINE fin_date *
1581	!!
1582	!! ** Purpose : Get final data in double precision YYYYMMDD.HHMMSS format
1583	!!
1584	!! ** Method : Get final data in double precision YYYYMMDD.HHMMSS format
1585	!!
1586	!! ** Action : Get final data in double precision YYYYMMDD.HHMMSS format
1587	!!
1588	!! History :
1589	!! ! 06-03 (K. Mogensen) Original code
1590	!! ! 06-05 (K. Mogensen) Reformatted
1591	!! ! 06-10 (A. Weaver) Cleaning
1592	!! ! 10-05 (D. Lea) Update to month length calculation for NEMO vn3.2
1593	!!----------------------------------------------------------------------
1594	USE phycst, ONLY : & ! Physical constants
1595	& rday
1596	! USE daymod, ONLY : & ! Time variables
1597	! & nmonth_len
1598	USE dom_oce, ONLY : & ! Ocean space and time domain variables
1599	& rdt
1600
1601	IMPLICIT NONE
1602
1603	!! * Arguments
1604	REAL(KIND=dp), INTENT(OUT) :: ddobsfin ! Final date in YYYYMMDD.HHMMSS
1605
1606	!! * Local declarations
1607	INTEGER :: iyea ! date - (year, month, day, hour, minute)
1608	INTEGER :: imon
1609	INTEGER :: iday
1610	INTEGER :: ihou
1611	INTEGER :: imin
1612	INTEGER :: imday ! Number of days in month.
1613	REAL(KIND=wp) :: zdayfrc ! Fraction of day
1614
1615	INTEGER, DIMENSION(12) :: imonth_len !: length in days of the months of the current year
1616
1617	!-----------------------------------------------------------------------
1618	! Initial date initialization (year, month, day, hour, minute)
1619	! (This assumes that the initial date is for 00z)
1620	!-----------------------------------------------------------------------
1621	iyea = ndate0 / 10000
1622	imon = ( ndate0 - iyea * 10000 ) / 100
1623	iday = ndate0 - iyea * 10000 - imon * 100
1624	ihou = 0
1625	imin = 0
1626
1627	!-----------------------------------------------------------------------
1628	! Compute number of days + number of hours + min since initial time
1629	!-----------------------------------------------------------------------
1630	iday = iday + nitend * rdt / rday
1631	zdayfrc = nitend * rdt / rday
1632	zdayfrc = zdayfrc - AINT( zdayfrc )
1633	ihou = INT( zdayfrc * 24 )
1634	imin = INT( ( zdayfrc * 24 - ihou ) * 60 )
1635
1636	!-----------------------------------------------------------------------
1637	! Convert number of days (iday) into a real date
1638	!----------------------------------------------------------------------
1639
1640	CALL calc_month_len( iyea, imonth_len )
1641
1642	DO WHILE ( iday > imonth_len(imon) )
1643	iday = iday - imonth_len(imon)
1644	imon = imon + 1
1645	IF ( imon > 12 ) THEN
1646	imon = 1
1647	iyea = iyea + 1
1648	CALL calc_month_len( iyea, imonth_len ) ! update month lengths
1649	ENDIF
1650	END DO
1651
1652	!-----------------------------------------------------------------------
1653	! Convert it into YYYYMMDD.HHMMSS format
1654	!-----------------------------------------------------------------------
1655	ddobsfin = iyea * 10000_dp + imon * 100_dp + iday &
1656	& + ihou * 0.01_dp + imin * 0.0001_dp
1657
1658	END SUBROUTINE fin_date
1659
1660	END MODULE diaobs

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