[3443] | 1 | MODULE seddta |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE seddta *** |
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| 4 | !! Sediment data : read sediment input data from a file |
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| 5 | !!===================================================================== |
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| 6 | #if defined key_sed |
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| 7 | !! * Modules used |
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| 8 | USE sed |
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| 9 | USE sedarr |
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| 10 | USE iom |
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| 11 | |
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| 12 | IMPLICIT NONE |
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| 13 | PRIVATE |
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| 14 | |
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| 15 | !! * Routine accessibility |
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| 16 | PUBLIC sed_dta ! |
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| 17 | |
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| 18 | !! * Module variables |
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| 19 | REAL(wp), DIMENSION(:), ALLOCATABLE :: smask ! mask for sediments points |
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| 20 | REAL(wp) :: rsecday ! number of second per a day |
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| 21 | REAL(wp) :: conv1 ! [m/day]--->[cm/s] |
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| 22 | REAL(wp) :: conv2 ! [kg/m2/month]-->[g/cm2/s] ( 1 month has 30 days ) |
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| 23 | |
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| 24 | INTEGER :: numbio |
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| 25 | |
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| 26 | #if defined key_sed_off |
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| 27 | INTEGER :: numoce |
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| 28 | #endif |
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| 29 | |
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[5215] | 30 | !! $Id$ |
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[3443] | 31 | CONTAINS |
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| 32 | |
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| 33 | !!--------------------------------------------------------------------------- |
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| 34 | !! sed_dta : read the NetCDF data file in online version using module iom |
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| 35 | !!--------------------------------------------------------------------------- |
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| 36 | |
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| 37 | SUBROUTINE sed_dta( kt ) |
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| 38 | !!---------------------------------------------------------------------- |
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| 39 | !! *** ROUTINE sed_dta *** |
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| 40 | !! |
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| 41 | !! ** Purpose : Reads data from a netcdf file and |
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| 42 | !! initialization of rain and pore water (k=1) components |
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| 43 | !! |
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| 44 | !! |
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| 45 | !! History : |
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| 46 | !! ! 04-10 (N. Emprin, M. Gehlen ) Original code |
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| 47 | !! ! 06-04 (C. Ethe) Re-organization ; Use of iom |
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| 48 | !!---------------------------------------------------------------------- |
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| 49 | |
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| 50 | !! Arguments |
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| 51 | INTEGER, INTENT(in) :: kt ! time-step |
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| 52 | |
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| 53 | !! * Local declarations |
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| 54 | INTEGER :: ji, jj, js, jw, ikt |
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| 55 | |
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| 56 | REAL(wp), DIMENSION(:,:), ALLOCATABLE :: zdta |
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| 57 | #if ! defined key_kriest |
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| 58 | REAL(wp), DIMENSION(:) , ALLOCATABLE :: zdtap, zdtag |
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| 59 | #endif |
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| 60 | |
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| 61 | |
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| 62 | !---------------------------------------------------------------------- |
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| 63 | |
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| 64 | ! Initialization of sediment variable |
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| 65 | ! Spatial dimension is merged, and unity converted if needed |
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| 66 | !------------------------------------------------------------- |
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| 67 | |
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| 68 | WRITE(numsed,*) |
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| 69 | WRITE(numsed,*) ' sed_dta : Bottom layer fields' |
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| 70 | WRITE(numsed,*) ' ~~~~~~' |
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| 71 | WRITE(numsed,*) ' Data from SMS model' |
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| 72 | WRITE(numsed,*) |
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| 73 | |
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| 74 | |
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| 75 | ! open file |
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| 76 | IF( kt == nitsed000 ) THEN |
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| 77 | WRITE(numsed,*) ' sed_dta : Sediment fields' |
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| 78 | CALL iom_open ( 'data_bio_bot' , numbio ) |
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| 79 | #if defined key_sed_off |
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| 80 | CALL iom_open( 'data_oce_bot', numoce) |
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| 81 | #endif |
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| 82 | rsecday = 60.* 60. * 24. |
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| 83 | conv1 = 1.0e+2 / rsecday |
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| 84 | conv2 = 1.0e+3 / ( 1.0e+4 * rsecday * 30. ) |
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| 85 | |
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| 86 | ! Compute sediment mask |
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| 87 | ALLOCATE( zdta(jpi,jpj) ) |
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| 88 | DO jj = 1, jpj |
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| 89 | DO ji = 1, jpi |
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| 90 | ikt = MAX( INT( sbathy(ji,jj) ) - 1, 1 ) |
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| 91 | zdta(ji,jj) = tmask(ji,jj,ikt) |
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| 92 | ENDDO |
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| 93 | ENDDO |
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| 94 | ALLOCATE( smask(jpoce) ) |
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| 95 | smask(:) = 0. |
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| 96 | CALL pack_arr( jpoce, smask(1:jpoce), zdta(1:jpi,1:jpj), iarroce(1:jpoce) ) |
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| 97 | ENDIF |
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| 98 | |
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| 99 | |
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| 100 | #if ! defined key_kriest |
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| 101 | ! Initialization of temporaries arrays |
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| 102 | ALLOCATE( zdtap(jpoce) ) ; zdtap(:) = 0. |
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| 103 | ALLOCATE( zdtag(jpoce) ) ; zdtag(:) = 0. |
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| 104 | #endif |
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| 105 | |
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| 106 | |
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| 107 | IF( MOD( kt - 1, nfreq ) == 0 ) THEN |
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| 108 | ! reading variables |
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| 109 | WRITE(numsed,*) |
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| 110 | WRITE(numsed,*) ' sed_dta : Bottom layer fields at time kt = ', kt |
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| 111 | ! reading variables |
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| 112 | trc_data(:,:,:) = 0. |
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| 113 | #if ! defined key_sed_off |
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| 114 | DO jj = 1,jpj |
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| 115 | DO ji = 1, jpi |
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| 116 | ikt = mbkt(ji,jj) |
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| 117 | IF ( tmask(ji,jj,ikt) == 1 ) THEN |
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| 118 | trc_data(ji,jj,1) = trn (ji,jj,ikt,jptal) |
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| 119 | trc_data(ji,jj,2) = trn (ji,jj,ikt,jpdic) |
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| 120 | trc_data(ji,jj,3) = trn (ji,jj,ikt,jpno3) / 7.6 |
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| 121 | trc_data(ji,jj,4) = trn (ji,jj,ikt,jppo4) / 122. |
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| 122 | trc_data(ji,jj,5) = trn (ji,jj,ikt,jpoxy) |
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| 123 | trc_data(ji,jj,6) = trn (ji,jj,ikt,jpsil) |
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| 124 | # if ! defined key_kriest |
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| 125 | trc_data(ji,jj,7 ) = sinksil (ji,jj,ikt) |
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| 126 | trc_data(ji,jj,8 ) = sinking (ji,jj,ikt) |
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| 127 | trc_data(ji,jj,9 ) = sinking2(ji,jj,ikt) |
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| 128 | trc_data(ji,jj,10) = sinkcal (ji,jj,ikt) |
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| 129 | trc_data(ji,jj,11) = tsn (ji,jj,ikt,jp_tem) |
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| 130 | trc_data(ji,jj,12) = tsn (ji,jj,ikt,jp_sal) |
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| 131 | # else |
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| 132 | trc_data(ji,jj,7 ) = sinksil (ji,jj,ikt) |
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| 133 | trc_data(ji,jj,8 ) = sinking (ji,jj,ikt) |
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| 134 | trc_data(ji,jj,9 ) = sinkcal (ji,jj,ikt) |
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| 135 | trc_data(ji,jj,10) = tsn (ji,jj,ikt,jp_tem) |
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| 136 | trc_data(ji,jj,11) = tsn (ji,jj,ikt,jp_sal) |
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| 137 | # endif |
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| 138 | ENDIF |
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| 139 | ENDDO |
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| 140 | ENDDO |
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| 141 | |
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| 142 | #else |
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| 143 | CALL iom_get( numbio, jpdom_data, 'ALKBOT' , trc_data(:,:,1 ) ) |
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| 144 | CALL iom_get( numbio, jpdom_data, 'DICBOT' , trc_data(:,:,2 ) ) |
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| 145 | CALL iom_get( numbio, jpdom_data, 'NO3BOT' , trc_data(:,:,3 ) ) |
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| 146 | CALL iom_get( numbio, jpdom_data, 'PO4BOT' , trc_data(:,:,4 ) ) |
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| 147 | CALL iom_get( numbio, jpdom_data, 'O2BOT' , trc_data(:,:,5 ) ) |
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| 148 | CALL iom_get( numbio, jpdom_data, 'SIBOT' , trc_data(:,:,6 ) ) |
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| 149 | # if ! defined key_kriest |
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| 150 | CALL iom_get( numbio, jpdom_data, 'OPALFLXBOT' , trc_data(:,:,7 ) ) |
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| 151 | CALL iom_get( numbio, jpdom_data, 'POCFLXBOT' , trc_data(:,:,8 ) ) |
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| 152 | CALL iom_get( numbio, jpdom_data, 'GOCFLXBOT' , trc_data(:,:,9 ) ) |
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| 153 | CALL iom_get( numbio, jpdom_data, 'CACO3FLXBOT', trc_data(:,:,10) ) |
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| 154 | CALL iom_get( numoce, jpdom_data, 'TBOT' , trc_data(:,:,11) ) |
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| 155 | CALL iom_get( numoce, jpdom_data, 'SBOT' , trc_data(:,:,12) ) |
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| 156 | # else |
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| 157 | CALL iom_get( numbio, jpdom_data, 'OPALFLXBOT' , trc_data(:,:,7 ) ) |
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| 158 | CALL iom_get( numbio, jpdom_data, 'POCFLXBOT' , trc_data(:,:,8 ) ) |
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| 159 | CALL iom_get( numbio, jpdom_data, 'CACO3FLXBOT', trc_data(:,:,9 ) ) |
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| 160 | CALL iom_get( numoce, jpdom_data, 'TBOT' , trc_data(:,:,10) ) |
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| 161 | CALL iom_get( numoce, jpdom_data, 'SBOT' , trc_data(:,:,11) ) |
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| 162 | # endif |
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| 163 | #endif |
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| 164 | |
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| 165 | ! Pore water initial concentration [mol/l] in k=1 |
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| 166 | !------------------------------------------------- |
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| 167 | |
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| 168 | ! Alkalinity ( 1 umol = 10-6equivalent ) |
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| 169 | CALL pack_arr ( jpoce, pwcp_dta(1:jpoce,jwalk), trc_data(1:jpi,1:jpj,1), iarroce(1:jpoce) ) |
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| 170 | ! DIC |
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| 171 | CALL pack_arr ( jpoce, pwcp_dta(1:jpoce,jwdic), trc_data(1:jpi,1:jpj,2), iarroce(1:jpoce) ) |
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| 172 | ! Nitrates (1 umol/l = 10-6 mol/l) |
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| 173 | CALL pack_arr ( jpoce, pwcp_dta(1:jpoce,jwno3), trc_data(1:jpi,1:jpj,3), iarroce(1:jpoce) ) |
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| 174 | ! Phosphates (1 umol/l = 10-6 mol/l) |
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| 175 | CALL pack_arr ( jpoce, pwcp_dta(1:jpoce,jwpo4), trc_data(1:jpi,1:jpj,4), iarroce(1:jpoce) ) |
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| 176 | ! Oxygen (1 umol/l = 10-6 mol/l) |
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| 177 | CALL pack_arr ( jpoce, pwcp_dta(1:jpoce,jwoxy), trc_data(1:jpi,1:jpj,5), iarroce(1:jpoce) ) |
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| 178 | ! Silicic Acid [mol.l-1] |
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| 179 | CALL pack_arr ( jpoce, pwcp_dta(1:jpoce,jwsil), trc_data(1:jpi,1:jpj,6), iarroce(1:jpoce) ) |
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| 180 | ! DIC13 (mol/l)obtained from dc13 and DIC (12) and PDB |
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| 181 | CALL iom_get ( numbio,jpdom_data,'DC13',zdta(:,:) ) |
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| 182 | CALL pack_arr ( jpoce, pwcp_dta(1:jpoce,jwc13), zdta(1:jpi,1:jpj), iarroce(1:jpoce) ) |
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| 183 | pwcp_dta(1:jpoce,jwc13) = pdb * ( pwcp_dta(1:jpoce,jwc13) * 1.0e-3 + 1.0 ) & |
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| 184 | & * pwcp_dta(1:jpoce,jwdic) |
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| 185 | |
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| 186 | ! Solid components : |
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| 187 | !----------------------- |
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| 188 | #if ! defined key_kriest |
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| 189 | ! Sinking fluxes for OPAL in mol.m-2.s-1 ; conversion in mol.cm-2.s-1 |
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| 190 | CALL pack_arr ( jpoce, rainrm_dta(1:jpoce,jsopal), trc_data(1:jpi,1:jpj,7), iarroce(1:jpoce) ) |
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| 191 | rainrm_dta(1:jpoce,jsopal) = rainrm_dta(1:jpoce,jsopal) * 1e-4 |
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| 192 | ! Sinking fluxes for POC in mol.m-2.s-1 ; conversion in mol.cm-2.s-1 |
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| 193 | CALL pack_arr ( jpoce, zdtap(1:jpoce), trc_data(1:jpi,1:jpj,8) , iarroce(1:jpoce) ) |
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| 194 | CALL pack_arr ( jpoce, zdtag(1:jpoce), trc_data(1:jpi,1:jpj,9) , iarroce(1:jpoce) ) |
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| 195 | rainrm_dta(1:jpoce,jspoc) = ( zdtap(1:jpoce) + zdtag(1:jpoce) ) * 1e-4 |
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| 196 | ! Sinking fluxes for Calcite in mol.m-2.s-1 ; conversion in mol.cm-2.s-1 |
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| 197 | CALL pack_arr ( jpoce, rainrm_dta(1:jpoce,jscal), trc_data(1:jpi,1:jpj,10), iarroce(1:jpoce) ) |
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| 198 | rainrm_dta(1:jpoce,jscal) = rainrm_dta(1:jpoce,jscal) * 1e-4 |
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| 199 | ! vector temperature [°C] and salinity |
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| 200 | CALL pack_arr ( jpoce, temp(1:jpoce), trc_data(1:jpi,1:jpj,11), iarroce(1:jpoce) ) |
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| 201 | CALL pack_arr ( jpoce, salt(1:jpoce), trc_data(1:jpi,1:jpj,12), iarroce(1:jpoce) ) |
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| 202 | #else |
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| 203 | ! Sinking fluxes for OPAL in mol.m-2.s-1 ; conversion in mol.cm-2.s-1 |
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| 204 | CALL pack_arr ( jpoce, rainrm_dta(1:jpoce,jsopal), trc_data(1:jpi,1:jpj,7), iarroce(1:jpoce) ) |
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| 205 | rainrm_dta(1:jpoce,jsopal) = rainrm_dta(1:jpoce,jsopal) * 1e-4 |
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| 206 | ! Sinking fluxes for POC in mol.m-2.s-1 ; conversion in mol.cm-2.s-1 |
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| 207 | CALL pack_arr ( jpoce, rainrm_dta(1:jpoce,jspoc), trc_data(1:jpi,1:jpj,8) , iarroce(1:jpoce) ) |
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| 208 | rainrm_dta(1:jpoce,jspoc) = rainrm_dta(1:jpoce,jspoc) * 1e-4 |
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| 209 | ! Sinking fluxes for Calcite in mol.m-2.s-1 ; conversion in mol.cm-2.s-1 |
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| 210 | CALL pack_arr ( jpoce, rainrm_dta(1:jpoce,jscal), trc_data(1:jpi,1:jpj,9), iarroce(1:jpoce) ) |
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| 211 | rainrm_dta(1:jpoce,jscal) = rainrm_dta(1:jpoce,jscal) * 1e-4 |
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| 212 | ! vector temperature [°C] and salinity |
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| 213 | CALL pack_arr ( jpoce, temp(1:jpoce), trc_data(1:jpi,1:jpj,10), iarroce(1:jpoce) ) |
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| 214 | CALL pack_arr ( jpoce, salt(1:jpoce), trc_data(1:jpi,1:jpj,11), iarroce(1:jpoce) ) |
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| 215 | |
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| 216 | #endif |
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| 217 | |
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| 218 | ! Clay rain rate in [mol/(cm**2.s)] |
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| 219 | ! inputs data in [kg.m-2.mois-1] ---> 1e+3/(1e+4*60*24*60*60) [g.cm-2.s-1] |
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| 220 | ! divided after by molecular weight g.mol-1 |
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| 221 | zdta(:,:) = 0. |
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| 222 | CALL iom_get( numbio, jpdom_data, 'CLAY', zdta(:,:) ) |
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| 223 | CALL pack_arr ( jpoce, rainrm_dta(1:jpoce,jsclay) , zdta(1:jpi,1:jpj), iarroce(1:jpoce) ) |
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| 224 | rainrm_dta(1:jpoce,jsclay) = rainrm_dta(1:jpoce,jsclay) * conv2 / mol_wgt(jsclay) |
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| 225 | |
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| 226 | ENDIF |
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| 227 | |
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| 228 | ! sediment pore water at 1st layer (k=1) |
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| 229 | DO jw = 1, jpwat |
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| 230 | pwcp(1:jpoce,1,jw) = pwcp_dta(1:jpoce,jw) * smask(1:jpoce) |
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| 231 | ENDDO |
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| 232 | |
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| 233 | ! rain |
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| 234 | DO js = 1, jpsol |
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| 235 | rainrm(1:jpoce,js) = rainrm_dta(1:jpoce,js) * smask(1:jpoce) |
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| 236 | ENDDO |
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| 237 | |
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| 238 | ! Calculation of raintg of each sol. comp.: rainrm in [g/(cm**2.s)] |
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| 239 | DO js = 1, jpsol |
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| 240 | rainrg(1:jpoce,js) = rainrm(1:jpoce,js) * mol_wgt(js) |
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| 241 | ENDDO |
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| 242 | |
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| 243 | ! Calculation of raintg = total massic flux rained in each cell (sum of sol. comp.) |
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| 244 | raintg(:) = 0. |
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| 245 | DO js = 1, jpsol |
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| 246 | raintg(1:jpoce) = raintg(1:jpoce) + rainrg(1:jpoce,js) |
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| 247 | ENDDO |
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| 248 | |
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| 249 | ! computation of dzdep = total thickness of solid material rained [cm] in each cell |
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| 250 | dzdep(1:jpoce) = raintg(1:jpoce) * rdtsed(2) |
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| 251 | |
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| 252 | |
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| 253 | DEALLOCATE( zdta ) |
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| 254 | #if ! defined key_kriest |
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| 255 | DEALLOCATE( zdtap ) ; DEALLOCATE( zdtag ) |
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| 256 | #endif |
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| 257 | |
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| 258 | IF( kt == nitsedend ) THEN |
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| 259 | CALL iom_close ( numbio ) |
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| 260 | #if defined key_sed_off |
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| 261 | CALL iom_close ( numoce ) |
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| 262 | #endif |
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| 263 | ENDIF |
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| 264 | |
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| 265 | END SUBROUTINE sed_dta |
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| 266 | |
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| 267 | #else |
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| 268 | !!====================================================================== |
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| 269 | !! MODULE seddta : Dummy module |
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| 270 | !!====================================================================== |
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[5215] | 271 | !! $Id$ |
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[3443] | 272 | CONTAINS |
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| 273 | SUBROUTINE sed_dta ( kt ) |
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| 274 | INTEGER, INTENT(in) :: kt |
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| 275 | WRITE(*,*) 'sed_stp: You should not have seen this print! error?', kt |
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| 276 | END SUBROUTINE sed_dta |
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| 277 | #endif |
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| 278 | |
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| 279 | END MODULE seddta |
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