[8395] | 1 | MODULE bio_medusa_diag_mod |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE bio_medusa_diag_mod *** |
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| 4 | !! Calculates diagnostics |
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| 5 | !!====================================================================== |
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| 6 | !! History : |
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| 7 | !! - ! 2017-04 (M. Stringer) Code taken from trcbio_medusa.F90 |
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| 8 | !!---------------------------------------------------------------------- |
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| 9 | #if defined key_medusa |
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| 10 | !!---------------------------------------------------------------------- |
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| 11 | !! MEDUSA bio-model |
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| 12 | !!---------------------------------------------------------------------- |
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| 13 | |
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| 14 | IMPLICIT NONE |
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| 15 | PRIVATE |
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| 16 | |
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| 17 | PUBLIC bio_medusa_diag ! Called in trcbio_medusa.F90 |
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| 18 | |
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| 19 | !!---------------------------------------------------------------------- |
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| 20 | !! NEMO/TOP 2.0 , LOCEAN-IPSL (2007) |
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| 21 | !! $Id$ |
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| 22 | !! Software governed by the CeCILL licence (modipsl/doc/NEMO_CeCILL.txt) |
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| 23 | !!---------------------------------------------------------------------- |
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| 24 | |
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| 25 | CONTAINS |
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| 26 | |
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| 27 | SUBROUTINE bio_medusa_diag( jk ) |
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| 28 | !!------------------------------------------------------------------- |
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| 29 | !! *** ROUTINE bio_medusa_diag *** |
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| 30 | !! This called from TRC_BIO_MEDUSA and calculates diagnostics |
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| 31 | !!------------------------------------------------------------------- |
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| 32 | USE bio_med_diag_iomput_mod, ONLY: bio_med_diag_iomput |
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| 33 | USE bio_medusa_mod |
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[10302] | 34 | USE dom_oce, ONLY: e3t_0, gdepw_0, tmask |
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| 35 | # if defined key_vvl |
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| 36 | USE dom_oce, ONLY: e3t_n, gdepw_n |
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| 37 | # endif |
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[8395] | 38 | USE in_out_manager, ONLY: lwp, numout |
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| 39 | USE iom, ONLY: lk_iomput |
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| 40 | USE par_oce, ONLY: jpim1, jpjm1 |
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| 41 | USE sms_medusa, ONLY: xrfn, xthetapd, xthetapn, & |
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| 42 | xthetazme, xthetazmi |
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[8442] | 43 | USE trc, ONLY: med_diag |
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[8395] | 44 | # if defined key_roam |
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| 45 | USE trcoxy_medusa, ONLY: oxy_sato |
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| 46 | # endif |
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| 47 | |
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| 48 | !!* Substitution |
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| 49 | # include "domzgr_substitute.h90" |
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| 50 | |
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| 51 | !! level |
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| 52 | INTEGER, INTENT( in ) :: jk |
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| 53 | |
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| 54 | !! Loop avariables |
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| 55 | INTEGER :: ji, jj, jn |
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| 56 | |
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| 57 | # if defined key_trc_diabio |
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| 58 | !!========================================================== |
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| 59 | !! LOCAL GRID CELL DIAGNOSTICS |
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| 60 | !!========================================================== |
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| 61 | !! |
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| 62 | !!---------------------------------------------------------- |
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| 63 | !! Full diagnostics key_trc_diabio: |
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| 64 | !! LOBSTER and PISCES support full diagnistics option |
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| 65 | !! key_trc_diabio which gives an option of FULL output of |
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| 66 | !! biological sourses and sinks. I cannot see any reason |
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| 67 | !! for doing this. If needed, it can be done as shown |
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| 68 | !! below. |
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| 69 | !!---------------------------------------------------------- |
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| 70 | !! |
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| 71 | IF(lwp) WRITE(numout,*) ' MEDUSA does not support key_trc_diabio' |
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| 72 | # endif |
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| 73 | |
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| 74 | !! The section below, down to calculation of zo2min, was moved |
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| 75 | !! from before the call to AIR_SEA in trcbio_medusa.F90 - marc 9/5/17 |
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| 76 | IF( lk_iomput ) THEN |
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| 77 | DO jj = 2,jpjm1 |
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| 78 | DO ji = 2,jpim1 |
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| 79 | if (tmask(ji,jj,jk) == 1) then |
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| 80 | !! sum tracers for inventory checks |
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| 81 | IF ( med_diag%INVTN%dgsave ) THEN |
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| 82 | ftot_n(ji,jj) = ftot_n(ji,jj) + & |
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| 83 | (fse3t(ji,jj,jk) * (zphn(ji,jj) + zphd(ji,jj) + & |
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| 84 | zzmi(ji,jj) + zzme(ji,jj) + & |
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| 85 | zdet(ji,jj) + zdin(ji,jj))) |
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| 86 | ENDIF |
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| 87 | IF ( med_diag%INVTSI%dgsave ) THEN |
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| 88 | ftot_si(ji,jj) = ftot_si(ji,jj) + & |
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| 89 | (fse3t(ji,jj,jk) * (zpds(ji,jj) + zsil(ji,jj))) |
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| 90 | ENDIF |
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| 91 | IF ( med_diag%INVTFE%dgsave ) THEN |
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| 92 | ftot_fe(ji,jj) = ftot_fe(ji,jj) + & |
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| 93 | (fse3t(ji,jj,jk) * (xrfn * & |
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| 94 | (zphn(ji,jj) + zphd(ji,jj) + & |
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| 95 | zzmi(ji,jj) + zzme(ji,jj) + & |
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| 96 | zdet(ji,jj)) + & |
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| 97 | zfer(ji,jj))) |
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| 98 | ENDIF |
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| 99 | ENDIF |
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| 100 | ENDDO |
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| 101 | ENDDO |
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| 102 | |
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| 103 | # if defined key_roam |
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| 104 | DO jj = 2,jpjm1 |
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| 105 | DO ji = 2,jpim1 |
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| 106 | if (tmask(ji,jj,jk) == 1) then |
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| 107 | IF ( med_diag%INVTC%dgsave ) THEN |
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| 108 | ftot_c(ji,jj) = ftot_c(ji,jj) + & |
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| 109 | (fse3t(ji,jj,jk) * ((xthetapn * zphn(ji,jj)) + & |
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| 110 | (xthetapd * zphd(ji,jj)) + & |
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| 111 | (xthetazmi * zzmi(ji,jj)) + & |
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| 112 | (xthetazme * zzme(ji,jj)) + & |
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| 113 | zdtc(ji,jj) + zdic(ji,jj))) |
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| 114 | ENDIF |
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| 115 | IF ( med_diag%INVTALK%dgsave ) THEN |
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| 116 | ftot_a(ji,jj) = ftot_a(ji,jj) + (fse3t(ji,jj,jk) * & |
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| 117 | zalk(ji,jj)) |
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| 118 | ENDIF |
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| 119 | IF ( med_diag%INVTO2%dgsave ) THEN |
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| 120 | ftot_o2(ji,jj) = ftot_o2(ji,jj) + (fse3t(ji,jj,jk) * & |
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| 121 | zoxy(ji,jj)) |
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| 122 | ENDIF |
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| 123 | ENDIF |
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| 124 | ENDDO |
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| 125 | ENDDO |
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| 126 | |
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| 127 | DO jj = 2,jpjm1 |
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| 128 | DO ji = 2,jpim1 |
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| 129 | if (tmask(ji,jj,jk) == 1) then |
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| 130 | IF ( med_diag%INVTC%dgsave ) THEN |
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| 131 | !! |
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| 132 | !! AXY (10/11/16): CMIP6 diagnostics |
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| 133 | IF ( med_diag%INTDISSIC%dgsave ) THEN |
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| 134 | intdissic(ji,jj) = intdissic(ji,jj) + & |
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| 135 | (fse3t(ji,jj,jk) * zdic(ji,jj)) |
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| 136 | ENDIF |
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| 137 | IF ( med_diag%INTDISSIN%dgsave ) THEN |
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| 138 | intdissin(ji,jj) = intdissin(ji,jj) + & |
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| 139 | (fse3t(ji,jj,jk) * zdin(ji,jj)) |
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| 140 | ENDIF |
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| 141 | IF ( med_diag%INTDISSISI%dgsave ) THEN |
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| 142 | intdissisi(ji,jj) = intdissisi(ji,jj) + & |
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| 143 | (fse3t(ji,jj,jk) * zsil(ji,jj)) |
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| 144 | ENDIF |
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| 145 | IF ( med_diag%INTTALK%dgsave ) THEN |
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| 146 | inttalk(ji,jj) = inttalk(ji,jj) + & |
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| 147 | (fse3t(ji,jj,jk) * zalk(ji,jj)) |
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| 148 | ENDIF |
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| 149 | ENDIF |
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| 150 | ENDIF |
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| 151 | ENDDO |
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| 152 | ENDDO |
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| 153 | |
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| 154 | DO jj = 2,jpjm1 |
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| 155 | DO ji = 2,jpim1 |
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| 156 | if (tmask(ji,jj,jk) == 1) then |
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| 157 | IF ( med_diag%O2min%dgsave ) THEN |
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| 158 | if ( zoxy(ji,jj) < o2min(ji,jj) ) then |
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| 159 | o2min(ji,jj) = zoxy(ji,jj) |
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| 160 | IF ( med_diag%ZO2min%dgsave ) THEN |
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| 161 | !! layer midpoint |
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| 162 | zo2min(ji,jj) = (fsdepw(ji,jj,jk) + & |
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| 163 | fdep1(ji,jj)) / 2.0 |
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| 164 | ENDIF |
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| 165 | endif |
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| 166 | ENDIF |
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| 167 | ENDIF |
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| 168 | ENDDO |
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| 169 | ENDDO |
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| 170 | # endif |
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| 171 | ENDIF |
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| 172 | |
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| 173 | # if defined key_roam |
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| 174 | !! This section is moved from just below CALL to AIR_SEA in |
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| 175 | !! trcbio_medusa.F90 - marc 9/5/17 |
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| 176 | DO jj = 2,jpjm1 |
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| 177 | DO ji = 2,jpim1 |
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| 178 | !! OPEN wet point IF..THEN loop |
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| 179 | if (tmask(ji,jj,jk) == 1) then |
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| 180 | |
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| 181 | !! AXY (11/11/16): CMIP6 oxygen saturation 3D diagnostic |
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| 182 | IF ( med_diag%O2SAT3%dgsave ) THEN |
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| 183 | ! Remove f_o2sat3 - marc 9/5/17 |
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| 184 | ! call oxy_sato( ztmp(ji,jj), zsal(ji,jj), f_o2sat3 ) |
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| 185 | ! o2sat3(ji, jj, jk) = f_o2sat3 |
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| 186 | call oxy_sato( ztmp(ji,jj), zsal(ji,jj), & |
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| 187 | o2sat3(ji,jj,jk) ) |
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| 188 | ENDIF |
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| 189 | ENDIF |
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| 190 | ENDDO |
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| 191 | ENDDO |
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| 192 | # endif |
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| 193 | |
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[8442] | 194 | !!--------------------------------------------------------------- |
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| 195 | !! Calculates the diagnostics used with iom_put |
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| 196 | !!--------------------------------------------------------------- |
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| 197 | CALL bio_med_diag_iomput( jk ) |
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[8395] | 198 | |
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| 199 | END SUBROUTINE bio_medusa_diag |
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| 200 | |
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| 201 | #else |
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| 202 | !!====================================================================== |
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| 203 | !! Dummy module : No MEDUSA bio-model |
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| 204 | !!====================================================================== |
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| 205 | CONTAINS |
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| 206 | SUBROUTINE bio_medusa_diag( ) ! Empty routine |
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| 207 | WRITE(*,*) 'bio_medusa_diag: You should not have seen this print! error?' |
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| 208 | END SUBROUTINE bio_medusa_diag |
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| 209 | #endif |
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| 210 | |
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| 211 | !!====================================================================== |
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| 212 | END MODULE bio_medusa_diag_mod |
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