1 | set -xv |
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2 | |
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3 | CONF=GYRE |
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4 | # Variables changed by lance_batch.ksh script |
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5 | RUN=xxx |
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6 | NB_PROCS=xxx |
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7 | LAUNCH=xxx |
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8 | LEXE=xxx |
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9 | CPERF=xxx |
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10 | D_INPUT=xxx |
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11 | D_GET=xxx |
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12 | REF_TAG=xxx |
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13 | TSYMB=xxx |
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14 | |
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15 | # Variables changed by ins_valid.ksh script |
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16 | MAINDIR=/Users/ctlod/WORK/AZE |
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17 | WORK=/Users/ctlod/WORK/AZE/modipsl/config |
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18 | REF_OD=/Volumes/FENUA/ORCA2_LIM_nemo_v2_IO |
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19 | |
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20 | # Arguments |
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21 | # type = 'long' or '1_short' or '2_short' |
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22 | type=$1 |
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23 | |
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24 | case ${type} in |
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25 | 'long' ) |
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26 | DIROUT='LONG' |
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27 | ITERATIONS=360 ;; |
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28 | |
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29 | '1_short' ) |
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30 | DIROUT='1_SHORT' |
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31 | ITERATIONS=180 ;; |
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32 | |
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33 | '2_short' ) |
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34 | DIROUT='2_SHORT' |
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35 | ITERATIONS=180 ;; |
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36 | |
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37 | 'gtime' ) |
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38 | DIROUT='GTIME' |
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39 | ITERATIONS=4320 ;; |
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40 | esac |
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41 | |
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42 | # Working directory |
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43 | cd ${TMPDIR} |
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44 | #-T- osxxlf cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/RUN |
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45 | #-T- osxxlf zback=$? |
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46 | #-T- osxxlf if [ ${zback} = 0 ] ; then rm -rf namelist* *.nc memory* solver.stat ocean.output* mpp.output* mono.output* ; fi |
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47 | |
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48 | ############################################################## |
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49 | ############################################################## |
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50 | ############################################################## |
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51 | ### Input files |
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52 | ############################################################## |
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53 | ############################################################## |
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54 | ############################################################## |
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55 | # Ocean namelist |
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56 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist namelist_f90 |
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57 | sed -e /!/d namelist_f90 > namelist |
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58 | |
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59 | # namelist modifications |
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60 | PAT_NIT000=$( grep 'nit000 =' namelist ) |
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61 | PAT_NITEND=$( grep 'nitend =' namelist ) |
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62 | PAT_NSTOCK=$( grep 'nstock =' namelist ) |
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63 | PAT_NWRITE=$( grep 'nwrite =' namelist ) |
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64 | PAT_NRSTDT=$( grep 'nrstdt =' namelist ) |
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65 | PAT_NBITCM=$( grep 'nbit_cmp =' namelist ) |
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66 | PAT_NSOLVV=$( grep 'nsolv =' namelist ) |
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67 | PAT_RESTAR=$( grep 'ln_rstart =' namelist ) |
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68 | PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist ) |
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69 | |
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70 | sed -e "s/$PAT_RESTAR/ ln_rstart = .false./" \ |
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71 | -e "s/$PAT_NIT000/ nit000 = 1/" \ |
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72 | -e "s/$PAT_NITEND/ nitend = ${ITERATIONS}/" \ |
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73 | -e "s/$PAT_NSTOCK/ nstock = ${ITERATIONS}/" \ |
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74 | -e "s/$PAT_NWRITE/ nwrite = 60/" \ |
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75 | -e "s/$PAT_NRSTDT/ nrstdt = 0/" \ |
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76 | -e "s/$PAT_NBITCM/ nbit_cmp = 1/" \ |
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77 | -e "s/$PAT_NSOLVV/ nsolv = 2/" \ |
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78 | -e "s/$PAT_RESMLD/ ln_trdmld_restart = .false./" \ |
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79 | namelist > nam.tmp |
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80 | |
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81 | mv nam.tmp namelist |
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82 | |
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83 | # Analytical forcing |
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84 | |
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85 | # Get restarts files if needed |
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86 | if [ $type = '2_short' ] |
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87 | then |
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88 | if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then |
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89 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart.nc restart.nc |
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90 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld.nc restart_mld.nc |
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91 | fi |
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92 | |
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93 | if [ ${RUN} = 'mpi' ] ; then |
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94 | typeset -Z4 i=0 |
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95 | while [ $i -lt $NB_PROCS ] |
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96 | do |
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97 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_${i}.nc restart_${i}.nc |
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98 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld_${i}.nc restart_mld_${i}.nc |
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99 | let i=$i+1 |
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100 | done |
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101 | fi |
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102 | |
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103 | # namelist modifications |
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104 | PAT_NIT000=$( grep 'nit000 =' namelist ) |
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105 | PAT_NITEND=$( grep 'nitend =' namelist ) |
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106 | PAT_NRSTDT=$( grep 'nrstdt =' namelist ) |
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107 | PAT_RESTAR=$( grep 'ln_rstart =' namelist ) |
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108 | PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist ) |
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109 | ORCA_NIT000=$(( $ITERATIONS + 1 )) |
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110 | ORCA_NITEND=$(( $ITERATIONS*2 )) |
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111 | |
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112 | sed -e "s/$PAT_RESTAR/ ln_rstart = .true./" \ |
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113 | -e "s/$PAT_NIT000/ nit000 = $ORCA_NIT000/" \ |
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114 | -e "s/$PAT_NITEND/ nitend = $ORCA_NITEND/" \ |
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115 | -e "s/$PAT_NRSTDT/ nrstdt = 2/" \ |
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116 | -e "s/$PAT_RESMLD/ ln_trdmld_restart = .true./" \ |
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117 | namelist > nam.tmp |
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118 | |
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119 | mv nam.tmp namelist |
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120 | |
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121 | fi |
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122 | |
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123 | ############################################################## |
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124 | ############################################################## |
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125 | ############################################################## |
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126 | ### Launch run |
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127 | ############################################################## |
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128 | ############################################################## |
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129 | ############################################################## |
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130 | |
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131 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_${RUN} opa_${CONF}_${RUN} |
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132 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_memo opa_${CONF}_memo |
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133 | chmod 777 opa_${CONF}_${RUN} |
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134 | chmod 777 opa_${CONF}_memo |
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135 | |
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136 | # |
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137 | # Profiling & Executable memory size |
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138 | #################################### |
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139 | touch memory_size.txt |
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140 | |
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141 | case ${RUN} in |
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142 | 'mon' ) |
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143 | #-T- sx8brodie export F_PROGINF=detail |
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144 | #-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt |
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145 | #-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt ;; |
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146 | #-T- aix ;; |
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147 | #-T- ax_mono echo "Stack memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt |
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148 | #-T- ax_mono echo "Static memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt ;; |
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149 | #-T- osxxlf echo "Stack memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt |
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150 | #-T- osxxlf echo "Static memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt ;; |
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151 | 'mpi' ) |
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152 | #-T- sx8brodie export MPIPROGINF=detail ;; |
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153 | #-T- aix ;; |
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154 | #-T- ax_mono ;; |
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155 | #-T- osxxlf ;; |
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156 | 'omp' ) |
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157 | #-T- sx8brodie export F_PROGINF=detail |
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158 | #-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} ;; |
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159 | #-T- aix ;; |
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160 | #-T- ax_mono ;; |
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161 | #-T- osxxlf ;; |
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162 | esac |
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163 | # |
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164 | # >>>>>> EXECUTION < < < < |
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165 | ########################## |
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166 | |
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167 | case ${RUN} in |
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168 | 'mon' | 'omp' ) |
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169 | ${CPERF} ./opa_${CONF}_${RUN} ;; |
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170 | 'mpi' ) |
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171 | #-T- sx8brodie ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;; |
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172 | #-T- aix ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;; |
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173 | #-T- osxxlf mpd& |
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174 | #-T- osxxlf sleep 5 |
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175 | #-T- osxxlf ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} |
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176 | #-T- osxxlf mpdallexit ;; |
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177 | esac |
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178 | |
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179 | ls -l |
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180 | # |
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181 | |
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182 | ############################################################## |
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183 | ############################################################## |
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184 | ############################################################## |
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185 | ### Save output files |
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186 | ############################################################## |
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187 | ############################################################## |
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188 | ############################################################## |
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189 | case ${RUN} in |
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190 | 'mon' | 'omp' ) |
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191 | liste_files=' *abort* memory* namelist* perfs* solver.stat ocean.output layout* GYRE* restart* mono*' ;; |
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192 | 'mpi' ) |
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193 | liste_files=' *abort* namelist* solver.stat perfs* ocean.output* layout* GYRE* restart* mpp*' ;; |
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194 | esac |
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195 | |
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196 | # Ensure that all files saved are coming from the current run |
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197 | ind=1 |
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198 | for k in $liste_files |
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199 | do |
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200 | echo $k > temp |
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201 | var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) ) |
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202 | if [ ${ind} = 1 -a ${var} == 'perf' ] ; then |
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203 | kc='perf*' |
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204 | rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${kc} |
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205 | ind=0 |
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206 | fi |
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207 | cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/$k |
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208 | done |
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209 | |
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210 | ############################################################## |
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211 | ############################################################## |
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212 | ############################################################## |
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213 | ### Retrieve some reference run files |
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214 | ############################################################## |
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215 | ############################################################## |
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216 | ############################################################## |
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217 | if [ ${REF_TAG} ] |
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218 | then |
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219 | STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT} |
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220 | LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err" |
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221 | for ref_file in ${LFILES} |
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222 | do |
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223 | ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/REF/${ref_file} |
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224 | done |
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225 | fi |
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226 | |
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227 | ############################################################## |
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228 | ############################################################## |
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229 | ############################################################## |
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230 | ### Launch restart job |
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231 | ############################################################## |
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232 | ############################################################## |
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233 | ############################################################## |
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234 | if [ $type = '1_short' ] ; then |
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235 | cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT |
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236 | ${LAUNCH} job_${RUN}_2_short.ksh |
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237 | fi |
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