1 | MODULE trcnam_lobster |
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2 | !!====================================================================== |
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3 | !! *** MODULE trcnam_lobster *** |
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4 | !! TOP : initialisation of some run parameters for LOBSTER bio-model |
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5 | !!====================================================================== |
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6 | !! History : 2.0 ! 2007-12 (C. Ethe, G. Madec) from trcnam.lobster1.h90 |
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7 | !!---------------------------------------------------------------------- |
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8 | #if defined key_lobster |
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9 | !!---------------------------------------------------------------------- |
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10 | !! 'key_lobster' : LOBSTER bio-model |
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11 | !!---------------------------------------------------------------------- |
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12 | !! trc_nam_lobster : LOBSTER model namelist read |
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13 | !!---------------------------------------------------------------------- |
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14 | USE oce_trc ! Ocean variables |
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15 | USE par_trc ! TOP parameters |
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16 | USE trc ! TOP variables |
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17 | USE sms_lobster ! sms trends |
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18 | |
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19 | IMPLICIT NONE |
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20 | PRIVATE |
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21 | |
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22 | PUBLIC trc_nam_lobster ! called by trcnam.F90 module |
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23 | |
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24 | !!---------------------------------------------------------------------- |
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25 | !! NEMO/TOP 3.3 , NEMO Consortium (2010) |
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26 | !! $Id$ |
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27 | !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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28 | !!---------------------------------------------------------------------- |
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29 | |
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30 | CONTAINS |
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31 | |
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32 | SUBROUTINE trc_nam_lobster |
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33 | !!---------------------------------------------------------------------- |
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34 | !! *** trc_nam_lobster *** |
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35 | !! |
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36 | !! ** Purpose : read LOBSTER namelist |
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37 | !! |
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38 | !! ** input : file 'namelist.trc.sms' containing the following |
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39 | !! namelist: natbio, natopt, and natdbi ("key_diabio") |
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40 | !!---------------------------------------------------------------------- |
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41 | INTEGER :: numnatl |
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42 | !! |
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43 | #if defined key_diatrc && ! defined key_iomput |
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44 | INTEGER :: jl, jn |
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45 | ! definition of additional diagnostic as a structure |
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46 | TYPE DIAG |
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47 | CHARACTER(len = 20) :: snamedia !: short name |
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48 | CHARACTER(len = 80 ) :: lnamedia !: long name |
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49 | CHARACTER(len = 20 ) :: unitdia !: unit |
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50 | END TYPE DIAG |
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51 | |
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52 | TYPE(DIAG) , DIMENSION(jp_lobster_2d) :: lobdia2d |
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53 | TYPE(DIAG) , DIMENSION(jp_lobster_3d) :: lobdia3d |
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54 | #endif |
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55 | #if defined key_diabio || defined key_trdmld_trc |
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56 | INTEGER :: js, jd |
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57 | ! definition of additional diagnostic as a structure |
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58 | TYPE DIABIO |
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59 | CHARACTER(len = 20) :: snamebio !: short name |
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60 | CHARACTER(len = 80 ) :: lnamebio !: long name |
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61 | CHARACTER(len = 20 ) :: unitbio !: unit |
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62 | END TYPE DIABIO |
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63 | |
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64 | TYPE(DIABIO) , DIMENSION(jp_lobster_trd) :: lobdiabio |
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65 | #endif |
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66 | |
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67 | NAMELIST/namlobphy/ apmin, tmumax, rgamma, fphylab, tmmaxp, tmminp, & |
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68 | & rcchl, aki, toptp |
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69 | NAMELIST/namlobnut/ anmin, akno3, aknh4, taunn, psinut |
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70 | NAMELIST/namlobzoo/ azmin, eggzoo, rgz, rppz, taus, aks, rpnaz, & |
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71 | & rdnaz, tauzn, fzoolab, fdbod, tmmaxz, tmminz |
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72 | NAMELIST/namlobdet/ admin, taudn, fdetlab, vsed |
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73 | NAMELIST/namlobdom/ taudomn |
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74 | NAMELIST/namlobsed/ sedlam, sedlostpoc |
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75 | NAMELIST/namlobrat/ redf, reddom, slopet, tmaxr, tminr, xhr, & |
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76 | & filmax, toptgz, tmaxgz, anumin, afdmin |
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77 | |
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78 | NAMELIST/namlobopt/ xkg0, xkr0, xkgp, xkrp, xlg, xlr, rpig |
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79 | #if defined key_diatrc && ! defined key_iomput |
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80 | NAMELIST/namlobdia/nn_writedia, lobdia3d, lobdia2d ! additional diagnostics |
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81 | #endif |
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82 | #if defined key_diabio || defined key_trdmld_trc |
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83 | NAMELIST/namlobdbi/nwritebio, lobdiabio |
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84 | #endif |
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85 | !!---------------------------------------------------------------------- |
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86 | |
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87 | IF(lwp) WRITE(numout,*) |
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88 | IF(lwp) WRITE(numout,*) ' trc_nam_lobster : read LOBSTER namelists' |
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89 | IF(lwp) WRITE(numout,*) ' ~~~~~~~~~~~~~~~' |
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90 | |
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91 | ! ! Open the namelist file |
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92 | ! ! ---------------------- |
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93 | CALL ctl_opn( numnatl, 'namelist_lobster', 'OLD', 'FORMATTED', 'SEQUENTIAL', 1, numout, .FALSE. ) |
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94 | |
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95 | ! namlobphy : parameters for phytoplankton |
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96 | apmin = 0. |
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97 | tmumax = 0. |
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98 | rgamma = 0. |
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99 | fphylab = 0. |
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100 | tmmaxp = 0. |
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101 | tmminp = 0. |
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102 | rcchl = 0. |
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103 | aki = 0. |
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104 | toptp = 0. |
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105 | |
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106 | REWIND( numnatl ) |
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107 | READ ( numnatl, namlobphy ) |
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108 | |
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109 | IF(lwp) THEN |
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110 | WRITE(numout,*) ' Namelist namlobphy' |
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111 | WRITE(numout,*) ' minimum phytoplancton concentration apmin =', apmin |
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112 | WRITE(numout,*) ' phyto max growth rate tmumax =', 86400 * tmumax, ' d' |
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113 | WRITE(numout,*) ' phytoplankton exudation fraction rgamma =', rgamma |
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114 | WRITE(numout,*) ' NH4 fraction of phytoplankton exsudation fphylab =', fphylab |
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115 | WRITE(numout,*) ' maximal phyto mortality rate tmmaxp =', 86400 * tmmaxp |
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116 | WRITE(numout,*) ' minimal phyto mortality rate tmminp =', 86400 * tmminp |
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117 | WRITE(numout,*) ' carbone/chlorophyl ratio rcchl =', rcchl |
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118 | WRITE(numout,*) ' light hlaf saturation constant aki =', aki |
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119 | WRITE(numout,*) ' optimal photosynthesis temperature toptp =', toptp |
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120 | WRITE(numout,*) ' ' |
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121 | ENDIF |
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122 | |
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123 | ! namlobnut : parameters for nutrients |
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124 | anmin = 0. |
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125 | psinut = 0. |
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126 | akno3 = 0. |
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127 | aknh4 = 0. |
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128 | taunn = 0. |
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129 | |
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130 | REWIND( numnatl ) |
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131 | READ ( numnatl, namlobnut ) |
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132 | IF(lwp) THEN |
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133 | WRITE(numout,*) ' Namelist namlobnut' |
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134 | WRITE(numout,*) ' minimum nutrients concentration anmin =', anmin |
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135 | WRITE(numout,*) ' half-saturation nutrient for no3 uptake akno3 =', akno3 |
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136 | WRITE(numout,*) ' half-saturation nutrient for nh4 uptake aknh4 =', aknh4 |
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137 | WRITE(numout,*) ' nitrification rate taunn =', taunn |
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138 | WRITE(numout,*) ' inhibition of no3 uptake by nh4 psinut =', psinut |
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139 | WRITE(numout,*) ' ' |
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140 | ENDIF |
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141 | |
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142 | ! namlobzoo : parameters for zooplankton |
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143 | azmin = 0. |
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144 | rgz = 0. |
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145 | rppz = 0. |
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146 | taus = 0. |
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147 | aks = 0. |
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148 | rpnaz = 0. |
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149 | rdnaz = 0. |
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150 | eggzoo = 0. |
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151 | tauzn = 0. |
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152 | tmmaxz = 0. |
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153 | tmminz = 0. |
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154 | fzoolab = 0. |
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155 | fdbod = 0. |
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156 | |
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157 | REWIND( numnatl ) |
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158 | READ ( numnatl, namlobzoo ) |
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159 | |
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160 | IF(lwp) THEN |
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161 | WRITE(numout,*) ' Namelist namlobzoo' |
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162 | WRITE(numout,*) ' minimum zooplancton concentration azmin =', azmin |
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163 | WRITE(numout,*) ' minimum for zoo concentration eggzoo =', eggzoo |
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164 | WRITE(numout,*) ' widtht of zoo temperature FUNCTION rgz =', rgz |
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165 | WRITE(numout,*) ' zoo preference for phyto rppz =', rppz |
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166 | WRITE(numout,*) ' maximal zoo grazing rate taus =', 86400 * taus, ' d' |
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167 | WRITE(numout,*) ' half saturation constant for zoo food aks =', aks |
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168 | WRITE(numout,*) ' non-assimilated phyto by zoo rpnaz =', rpnaz |
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169 | WRITE(numout,*) ' non-assimilated detritus by zoo rdnaz =', rdnaz |
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170 | WRITE(numout,*) ' zoo specific excretion rate tauzn =', 86400 * tauzn |
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171 | WRITE(numout,*) ' maximal zoo mortality rate tmmaxz =', 86400 * tmmaxz |
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172 | WRITE(numout,*) ' minimal zoo mortality rate tmminz =', 86400 * tmminz |
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173 | WRITE(numout,*) ' NH4 fraction of zooplankton excretion fzoolab =', fzoolab |
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174 | WRITE(numout,*) ' Zooplankton mortality fraction that goes to detritus fdbod =', fdbod |
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175 | WRITE(numout,*) ' ' |
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176 | ENDIF |
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177 | |
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178 | ! namlobdet : parameters for detritus |
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179 | admin = 0. |
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180 | taudn = 0. |
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181 | vsed = 0. |
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182 | fdetlab = 0. |
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183 | |
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184 | REWIND( numnatl ) |
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185 | READ ( numnatl, namlobdet ) |
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186 | |
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187 | IF(lwp) THEN |
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188 | WRITE(numout,*) ' Namelist namlobdet' |
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189 | WRITE(numout,*) ' minimum detritus concentration admin =', admin |
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190 | WRITE(numout,*) ' detrital breakdown rate taudn =', 86400 * taudn , ' d' |
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191 | WRITE(numout,*) ' detritus sedimentation speed vsed =', 86400 * vsed , ' d' |
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192 | WRITE(numout,*) ' NH4 fraction of detritus dissolution fdetlab =', fdetlab |
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193 | WRITE(numout,*) ' ' |
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194 | ENDIF |
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195 | |
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196 | ! namlobdom : parameters for DOM |
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197 | taudomn = 0. |
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198 | |
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199 | REWIND( numnatl ) |
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200 | READ ( numnatl, namlobdom ) |
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201 | |
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202 | IF(lwp) THEN |
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203 | WRITE(numout,*) ' Namelist namlobdom' |
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204 | WRITE(numout,*) ' dom remineralisation rate taudomn =', taudomn |
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205 | WRITE(numout,*) ' ' |
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206 | ENDIF |
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207 | |
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208 | ! namlobsed : parameters from aphotic layers to sediment |
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209 | sedlam = 0. |
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210 | sedlostpoc = 0. |
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211 | |
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212 | REWIND( numnatl ) |
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213 | READ ( numnatl, namlobsed ) |
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214 | |
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215 | IF(lwp) THEN |
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216 | WRITE(numout,*) ' Namelist namlobsed' |
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217 | WRITE(numout,*) ' time coeff of POC in sediments sedlam =', sedlam |
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218 | WRITE(numout,*) ' Sediment geol loss for POC sedlostpoc=', sedlostpoc |
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219 | WRITE(numout,*) ' ' |
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220 | ENDIF |
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221 | |
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222 | ! namlobrat : general coefficient |
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223 | redf = 0. |
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224 | reddom = 0. |
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225 | slopet = 0. |
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226 | tmaxr = 1./( 4.*rday)*0. |
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227 | tminr = 1./(24.*30.*rday)*0. |
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228 | xhr = 0. |
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229 | filmax = 0. |
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230 | toptgz = 0. |
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231 | tmaxgz = 0. |
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232 | anumin = 0. |
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233 | afdmin = 0. |
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234 | |
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235 | REWIND( numnatl ) |
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236 | READ ( numnatl, namlobrat ) |
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237 | |
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238 | IF(lwp) THEN |
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239 | WRITE(numout,*) ' Namelist namlobrat' |
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240 | WRITE(numout,*) ' redfield ratio c:n for phyto redf =', redf |
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241 | WRITE(numout,*) ' redfield ratio c:n for DOM reddom =', reddom |
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242 | WRITE(numout,*) ' van t hoff coefficient slopet =', slopet |
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243 | WRITE(numout,*) ' maximum damping for d z or p tmaxr =', tmaxr |
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244 | WRITE(numout,*) ' damping-remineralisation rate tminr =', tminr |
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245 | WRITE(numout,*) ' coeff for martin''s remineralistion xhr =', xhr |
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246 | WRITE(numout,*) ' maximal mass clearance rate for zoo filmax =', filmax |
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247 | WRITE(numout,*) ' optimal temperature for zoo growth toptgz =', toptgz |
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248 | WRITE(numout,*) ' maximal temperature for zoo growth tmaxgz =', tmaxgz |
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249 | WRITE(numout,*) ' nutrient threshold for phyto mort anumin =', anumin |
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250 | WRITE(numout,*) ' food threshold for zoo mort afdmin =', afdmin |
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251 | WRITE(numout,*) ' ' |
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252 | ENDIF |
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253 | |
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254 | |
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255 | ! namlobopt : optical parameters |
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256 | xkg0 = 0. |
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257 | xkr0 = 0. |
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258 | xkgp = 0. |
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259 | xkrp = 0. |
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260 | xlg = 0. |
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261 | xlr = 0. |
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262 | rpig = 0. |
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263 | |
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264 | REWIND( numnatl ) |
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265 | READ ( numnatl, namlobopt ) |
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266 | |
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267 | IF(lwp) THEN |
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268 | WRITE(numout,*) |
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269 | WRITE(numout,*) ' Namelist namlobopt' |
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270 | WRITE(numout,*) ' green water absorption coeff xkg0 = ', xkg0 |
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271 | WRITE(numout,*) ' red water absorption coeff xkr0 = ', xkr0 |
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272 | WRITE(numout,*) ' pigment red absorption coeff xkrp = ', xkrp |
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273 | WRITE(numout,*) ' pigment green absorption coeff xkgp = ', xkgp |
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274 | WRITE(numout,*) ' green chl exposant xlg = ', xlg |
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275 | WRITE(numout,*) ' red chl exposant xlr = ', xlr |
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276 | WRITE(numout,*) ' chla/chla+phea ratio rpig = ', rpig |
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277 | WRITE(numout,*) ' ' |
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278 | ENDIF |
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279 | |
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280 | #if defined key_diatrc && ! defined key_iomput |
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281 | |
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282 | ! Namelist namlobdia |
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283 | ! ------------------- |
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284 | nn_writedia = 10 ! default values |
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285 | |
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286 | DO jl = 1, jp_lobster_2d |
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287 | jn = jp_lob0_2d + jl - 1 |
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288 | WRITE(ctrc2d(jn),'("2D_",I1)') jn ! short name |
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289 | WRITE(ctrc2l(jn),'("2D DIAGNOSTIC NUMBER ",I2)') jn ! long name |
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290 | ctrc2u(jn) = ' ' ! units |
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291 | END DO |
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292 | ! ! 3D output arrays |
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293 | DO jl = 1, jp_lobster_3d |
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294 | jn = jp_lob0_3d + jl - 1 |
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295 | WRITE(ctrc3d(jn),'("3D_",I1)') jn ! short name |
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296 | WRITE(ctrc3l(jn),'("3D DIAGNOSTIC NUMBER ",I2)') jn ! long name |
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297 | ctrc3u(jn) = ' ' ! units |
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298 | END DO |
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299 | |
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300 | REWIND( numnatl ) ! read natrtd |
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301 | READ ( numnatl, namlobdia ) |
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302 | |
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303 | DO jl = 1, jp_lobster_2d |
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304 | jn = jp_lob0_2d + jl - 1 |
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305 | ctrc2d(jn) = lobdia2d(jl)%snamedia |
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306 | ctrc2l(jn) = lobdia2d(jl)%lnamedia |
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307 | ctrc2u(jn) = lobdia2d(jl)%unitdia |
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308 | END DO |
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309 | |
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310 | DO jl = 1, jp_lobster_3d |
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311 | jn = jp_lob0_3d + jl - 1 |
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312 | ctrc3d(jn) = lobdia3d(jl)%snamedia |
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313 | ctrc3l(jn) = lobdia3d(jl)%lnamedia |
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314 | ctrc3u(jn) = lobdia3d(jl)%unitdia |
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315 | END DO |
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316 | |
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317 | IF(lwp) THEN ! control print |
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318 | WRITE(numout,*) |
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319 | WRITE(numout,*) ' Namelist : natadd' |
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320 | WRITE(numout,*) ' frequency of outputs for additional arrays nn_writedia = ', nn_writedia |
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321 | DO jl = 1, jp_lobster_3d |
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322 | jn = jp_lob0_3d + jl - 1 |
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323 | WRITE(numout,*) ' 3d output field No : ',jn |
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324 | WRITE(numout,*) ' short name : ', TRIM(ctrc3d(jn)) |
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325 | WRITE(numout,*) ' long name : ', TRIM(ctrc3l(jn)) |
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326 | WRITE(numout,*) ' unit : ', TRIM(ctrc3u(jn)) |
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327 | WRITE(numout,*) ' ' |
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328 | END DO |
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329 | |
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330 | DO jl = 1, jp_lobster_2d |
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331 | jn = jp_lob0_2d + jl - 1 |
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332 | WRITE(numout,*) ' 2d output field No : ',jn |
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333 | WRITE(numout,*) ' short name : ', TRIM(ctrc2d(jn)) |
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334 | WRITE(numout,*) ' long name : ', TRIM(ctrc2l(jn)) |
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335 | WRITE(numout,*) ' unit : ', TRIM(ctrc2u(jn)) |
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336 | WRITE(numout,*) ' ' |
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337 | END DO |
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338 | ENDIF |
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339 | #endif |
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340 | |
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341 | #if defined key_diabio || defined key_trdmld_trc |
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342 | ! namlobdbi : bio diagnostics |
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343 | nwritebio = 10 ! default values |
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344 | |
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345 | DO js = 1, jp_lobster_trd |
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346 | jd = jp_lob0_trd + js - 1 |
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347 | IF( jd < 10 ) THEN ; WRITE (ctrbio(jd),'("BIO_",I1)') jd ! short name |
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348 | ELSEIF (jd < 100 ) THEN ; WRITE (ctrbio(jd),'("BIO_",I2)') jd |
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349 | ELSE ; WRITE (ctrbio(jd),'("BIO_",I3)') jd |
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350 | ENDIF |
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351 | WRITE(ctrbil(jd),'("BIOLOGICAL TREND NUMBER ",I2)') jd ! long name |
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352 | ctrbiu(jd) = 'mmoleN/m3/s ' ! units |
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353 | END DO |
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354 | |
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355 | REWIND( numnatl ) |
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356 | READ ( numnatl, namlobdbi ) |
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357 | |
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358 | DO js = 1, jp_lobster_trd |
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359 | jd = jp_lob0_trd + js - 1 |
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360 | ctrbio(jd) = lobdiabio(js)%snamebio |
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361 | ctrbil(jd) = lobdiabio(js)%lnamebio |
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362 | ctrbiu(jd) = lobdiabio(js)%unitbio |
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363 | END DO |
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364 | |
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365 | IF(lwp) THEN ! control print |
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366 | WRITE(numout,*) |
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367 | WRITE(numout,*) ' Namelist : namlobdbi' |
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368 | WRITE(numout,*) ' frequency of outputs for biological trends nwritebio = ', nwritebio |
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369 | DO js = 1, jp_lobster_trd |
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370 | jd = jp_lob0_trd + js - 1 |
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371 | WRITE(numout,*) ' biological trend No : ',jd |
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372 | WRITE(numout,*) ' short name : ', TRIM(ctrbio(jd)) |
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373 | WRITE(numout,*) ' long name : ', TRIM(ctrbil(jd)) |
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374 | WRITE(numout,*) ' unit : ', TRIM(ctrbiu(jd)) |
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375 | WRITE(numout,*) ' ' |
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376 | END DO |
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377 | END IF |
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378 | #endif |
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379 | ! |
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380 | END SUBROUTINE trc_nam_lobster |
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381 | |
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382 | #else |
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383 | !!---------------------------------------------------------------------- |
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384 | !! Dummy module : No LOBSTER |
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385 | !!---------------------------------------------------------------------- |
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386 | CONTAINS |
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387 | SUBROUTINE trc_nam_lobster ! Empty routine |
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388 | END SUBROUTINE trc_nam_lobster |
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389 | #endif |
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390 | |
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391 | !!====================================================================== |
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392 | END MODULE trcnam_lobster |
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