[1691] | 1 | <?xml version="1.0"?> |
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| 2 | |
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| 3 | <simulation> |
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| 4 | |
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| 5 | <context id="nemo"> |
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| 6 | |
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| 7 | <!-- groups of variables definition --> |
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| 8 | |
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| 9 | <field_definition level="1" prec="4" operation="ave(X)" freq_op="21600" enabled=".TRUE."> |
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| 10 | |
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| 11 | <!-- ptrc on T grid --> |
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| 12 | |
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| 13 | <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> |
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| 14 | <field id="DIC" description="Dissolved inorganic Concentration" unit="mol-C/L" /> |
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| 15 | <field id="Alkalini" description="Total Alkalinity Concentration" unit="eq/L " /> |
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| 16 | <field id="O2" description="Calcite Concentration" unit="mol-C/L" /> |
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| 17 | <field id="CaCO3" description="Phosphate Concentration" unit="mol-C/L" /> |
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| 18 | <field id="PO4" description="Small organic carbon Concentration" unit="mol-C/L" /> |
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| 19 | <field id="POC" description="Silicate Concentration" unit="mol-C/L" /> |
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| 20 | <field id="Si" description="Nanophytoplankton Concentration" unit="mol-C/L" /> |
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| 21 | <field id="PHY" description="Microzooplankton Concentration" unit="mol-C/L" /> |
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| 22 | <field id="ZOO" description="Dissolved organic Concentration" unit="mol-C/L" /> |
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| 23 | <field id="PHY2" description="Diatoms Concentration" unit="mol-C/L" /> |
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| 24 | <field id="ZOO2" description="Mesozooplankton Concentration" unit="mol-C/L" /> |
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| 25 | <field id="BSi" description="Diatoms Silicate Concentration" unit="mol-C/L" /> |
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| 26 | <field id="Fer" description="Dissolved Iron Concentration" unit="mol-C/L" /> |
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| 27 | <field id="BFe" description="Big iron particles Concentration" unit="mol-C/L" /> |
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| 28 | <field id="GOC" description="Big organic carbon Concentration" unit="mol-C/L" /> |
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| 29 | <field id="SFe" description="Small iron particles Concentration" unit="mol-C/L" /> |
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| 30 | <field id="DFe" description="Diatoms iron Concentration" unit="mol-C/L" /> |
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| 31 | <field id="DSi" description="Sinking biogenic Silicate Concentration" unit="mol-C/L" /> |
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| 32 | <field id="NFe" description="Nano iron Concentration" unit="mol-C/L" /> |
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| 33 | <field id="NCHL" description="Nano chlorophyl Concentration" unit="mol-C/L" /> |
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| 34 | <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mol-C/L" /> |
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| 35 | <field id="NO3" description="Nitrates Concentration" unit="mol-C/L" /> |
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| 36 | <field id="NH4" description="Ammonium Concentration" unit="mol-C/L" /> |
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| 37 | </group> |
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| 38 | |
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| 39 | <!-- diad on T grid --> |
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| 40 | |
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| 41 | <group id="diad_T" axis_ref="none" grid_ref="grid_T"> |
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| 42 | <field id="PH" description="PH" unit="-" axis_ref="deptht" /> |
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| 43 | <field id="CO3" description="Bicarbonates" unit="mol/L" axis_ref="deptht" /> |
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| 44 | <field id="CO3sat" description="CO3 saturation" unit="mol/L" axis_ref="deptht" /> |
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| 45 | <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> |
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| 46 | <field id="PPPHY" description="Primary production of nanophyto" unit="mol-C/m3/s" axis_ref="deptht" /> |
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| 47 | <field id="PPPHY2" description="Primary production of diatoms" unit="mol-C/m3/s" axis_ref="deptht" /> |
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| 48 | <field id="PPNEWN" description="New Primary production of nanophyto" unit="mol-C/m3/s" axis_ref="deptht" /> |
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| 49 | <field id="PPNEWD" description="New Primary production of diatoms" unit="mol-C/m3/s" axis_ref="deptht" /> |
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| 50 | <field id="PBSi" description="Primary production of Si diatoms" unit="mol-Si/m3/s" axis_ref="deptht" /> |
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| 51 | <field id="PFeN" description="Primary production of nano iron" unit="mol-Fe/m3/s" axis_ref="deptht" /> |
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| 52 | <field id="PFeD" description="Primary production of diatoms iron" unit="mol-Fe/m3/s" axis_ref="deptht" /> |
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| 53 | <field id="Pcal" description="Calcite production" unit="mol-C/m3/s" axis_ref="deptht" /> |
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| 54 | <field id="Dcal" description="Calcite dissolution" unit="mol-C/m3/s" axis_ref="deptht" /> |
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| 55 | <field id="Graz" description="Grazing by microzoo" unit="mol-C/m3/s" axis_ref="deptht" /> |
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| 56 | <field id="Graz2" description="Grazing by mesozoo" unit="mol-C/m3/s" axis_ref="deptht" /> |
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| 57 | <field id="Nfix" description="Nitrogen fixation" unit="mol-N/m2/s" axis_ref="deptht" /> |
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| 58 | <field id="ExpPOC" description="POC export" unit="mol-C/m2/s" axis_ref="deptht" /> |
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| 59 | <field id="ExpGOC" description="GOC export" unit="mol-C/m2/s" axis_ref="deptht" /> |
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| 60 | <field id="ExpFe1" description="Nano iron export" unit="mol-Fe/m2/s" axis_ref="deptht" /> |
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| 61 | <field id="ExpFe2" description="Diatoms iron export" unit="mol-Fe/m2/s" axis_ref="deptht" /> |
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| 62 | <field id="ExpSi" description="Silicate export" unit="mol-Si/m2/s" axis_ref="deptht" /> |
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| 63 | <field id="Expcal" description="Calcite export" unit="mol-C/m2/s" axis_ref="deptht" /> |
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| 64 | <field id="Cflx" description="DIC flux" unit="mol-C/m2/s" /> |
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| 65 | <field id="Oflx" description="Oxygen flux" unit="mol-C/m2/s" /> |
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| 66 | <field id="Kg" description="Gas transfer" unit="mol-C/m2/s/uatm" /> |
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| 67 | <field id="Dpco2" description="Delta CO2" unit="uatm" /> |
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| 68 | <field id="Dpo2" description="Delta O2" unit="uatm" /> |
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| 69 | <field id="Heup" description="Euphotic layer depth" unit="m" /> |
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| 70 | <field id="Irondep" description="Iron deposition" unit="mol-Fe/m2/s" /> |
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| 71 | </group> |
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| 72 | |
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| 73 | |
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| 74 | </field_definition> |
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| 75 | |
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| 76 | <!-- file definition --> |
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| 77 | |
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| 78 | <file_definition output_level="10" enabled=".TRUE."> |
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| 79 | |
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| 80 | <file id=<file_name_ptrc_T> description="pisces sms variables" output_freq=<output_frequency_trc> output_level="5" > |
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| 81 | <field ref="DIC" /> |
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| 82 | <field ref="Alkalini" /> |
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| 83 | <field ref="O2" /> |
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| 84 | <field ref="CaCO3" /> |
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| 85 | <field ref="PO4" /> |
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| 86 | <field ref="POC" /> |
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| 87 | <field ref="Si" /> |
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| 88 | <field ref="PHY" /> |
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| 89 | <field ref="ZOO" /> |
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| 90 | <field ref="PHY2" /> |
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| 91 | <field ref="ZOO2" /> |
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| 92 | <field ref="BSi" /> |
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| 93 | <field ref="Fer" /> |
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| 94 | <field ref="BFe" /> |
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| 95 | <field ref="GOC" /> |
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| 96 | <field ref="SFe" /> |
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| 97 | <field ref="DFe" /> |
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| 98 | <field ref="DSi" /> |
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| 99 | <field ref="NFe" /> |
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| 100 | <field ref="NCHL" /> |
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| 101 | <field ref="DCHL" /> |
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| 102 | <field ref="NO3" /> |
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| 103 | <field ref="NH4" /> |
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| 104 | </file> |
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| 105 | |
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| 106 | <file id=<file_name_diad_T> description="additional pisces diagnostics" output_freq=<output_frequency_trc> output_level="5" > |
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| 107 | <field ref="PH" /> |
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| 108 | <field ref="CO3" /> |
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| 109 | <field ref="CO3sat" /> |
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| 110 | <field ref="PAR" /> |
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| 111 | <field ref="PPPHY" /> |
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| 112 | <field ref="PPPHY2" /> |
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| 113 | <field ref="PPNEWN" /> |
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| 114 | <field ref="PPNEWD" /> |
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| 115 | <field ref="PBSi" /> |
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| 116 | <field ref="PFeN" /> |
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| 117 | <field ref="PFeD" /> |
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| 118 | <field ref="Pcal" /> |
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| 119 | <field ref="Dcal" /> |
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| 120 | <field ref="Graz" /> |
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| 121 | <field ref="Graz2" /> |
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| 122 | <field ref="Cflx" /> |
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| 123 | <field ref="ExpPOC" /> |
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| 124 | <field ref="ExpGOC" /> |
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| 125 | <field ref="ExpFe1" /> |
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| 126 | <field ref="ExpFe2" /> |
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| 127 | <field ref="ExpSi" /> |
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| 128 | <field ref="Expcal" /> |
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| 129 | <field ref="Oflx" /> |
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| 130 | <field ref="Kg" /> |
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| 131 | <field ref="Dpco2" /> |
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| 132 | <field ref="Dpo2" /> |
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| 133 | <field ref="Heup" /> |
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| 134 | <field ref="Irondep" /> |
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| 135 | <field ref="Nfix" /> |
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| 136 | </file> |
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| 137 | |
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| 138 | </file_definition> |
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| 139 | |
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| 140 | |
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| 141 | <axis_definition> |
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| 142 | <axis id="deptht" description="Vertical T levels" unit="m" positive=".false." /> |
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| 143 | <axis id="depthu" description="Vertical U levels" unit="m" positive=".false." /> |
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| 144 | <axis id="depthv" description="Vertical V levels" unit="m" positive=".false." /> |
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| 145 | <axis id="depthw" description="Vertical W levels" unit="m" positive=".false." /> |
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| 146 | <axis id="none" description="axe non defini" unit="none" size="1" /> |
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| 147 | </axis_definition> |
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| 148 | |
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| 149 | <grid_definition> |
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| 150 | <grid id="grid_T" description="grid T" /> |
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| 151 | <grid id="grid_U" description="grid U" /> |
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| 152 | <grid id="grid_V" description="grid V" /> |
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| 153 | <grid id="grid_W" description="grid W" /> |
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| 154 | </grid_definition> |
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| 155 | |
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| 156 | </context> |
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| 157 | |
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| 158 | </simulation> |
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