1 | # $Id$ |
---|
2 | set -xv |
---|
3 | |
---|
4 | CONF=ZAGRIF |
---|
5 | # Variables changed by lance_batch.ksh script |
---|
6 | RUN=xxx |
---|
7 | NB_PROCS=xxx |
---|
8 | LAUNCH=xxx |
---|
9 | LEXE=xxx |
---|
10 | CPERF=xxx |
---|
11 | D_INPUT=xxx |
---|
12 | D_GET=xxx |
---|
13 | REF_TAG=xxx |
---|
14 | TSYMB=xxx |
---|
15 | |
---|
16 | # Variables changed by ins_valid.ksh script |
---|
17 | MAINDIR=/Users/ctlod/WORK/AZE |
---|
18 | WORK=/Users/ctlod/WORK/AZE/modipsl/config |
---|
19 | REF_OD=/Volumes/FENUA/ORCA2_LIM_nemo_v2_IO |
---|
20 | |
---|
21 | # Arguments |
---|
22 | # type = 'long' or '1_short' or '2_short' |
---|
23 | type=$1 |
---|
24 | |
---|
25 | case ${type} in |
---|
26 | 'long' ) |
---|
27 | DIROUT='LONG' |
---|
28 | ITERATIONS=210 |
---|
29 | NOUTPUT=75 ;; |
---|
30 | |
---|
31 | '1_short' ) |
---|
32 | DIROUT='1_SHORT' |
---|
33 | ITERATIONS=105 |
---|
34 | NOUTPUT=75 ;; |
---|
35 | |
---|
36 | '2_short' ) |
---|
37 | DIROUT='2_SHORT' |
---|
38 | ITERATIONS=105 |
---|
39 | NOUTPUT=75 ;; |
---|
40 | |
---|
41 | 'gtime' ) |
---|
42 | DIROUT='GTIME' |
---|
43 | ITERATIONS=5475 |
---|
44 | NOUTPUT=75 ;; |
---|
45 | esac |
---|
46 | |
---|
47 | # Working directory |
---|
48 | cd ${TMPDIR} |
---|
49 | |
---|
50 | ############################################################## |
---|
51 | ############################################################## |
---|
52 | ############################################################## |
---|
53 | ### Input files |
---|
54 | ############################################################## |
---|
55 | ############################################################## |
---|
56 | ############################################################## |
---|
57 | # Ocean namelist |
---|
58 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist . |
---|
59 | |
---|
60 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/1_namelist . |
---|
61 | |
---|
62 | # Sea-Ice namelist |
---|
63 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist_ice_lim2 namelist_ice |
---|
64 | |
---|
65 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/1_namelist_ice_lim2 1_namelist_ice |
---|
66 | |
---|
67 | # AGRIF file |
---|
68 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/AGRIF_FixedGrids.in AGRIF_FixedGrids.in |
---|
69 | |
---|
70 | # Local function to find namelists parameters |
---|
71 | supergrep () { |
---|
72 | grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" |
---|
73 | } |
---|
74 | |
---|
75 | for CHGFILE in `ls *namelist` |
---|
76 | do |
---|
77 | # namelist modifications |
---|
78 | PAT_NIT000=$( supergrep nit000 ${CHGFILE} ) |
---|
79 | PAT_NITEND=$( supergrep nitend ${CHGFILE} ) |
---|
80 | PAT_NSTOCK=$( supergrep nstock ${CHGFILE} ) |
---|
81 | PAT_NWRITE=$( supergrep nwrite ${CHGFILE} ) |
---|
82 | PAT_NRSTDT=$( supergrep nrstdt ${CHGFILE} ) |
---|
83 | PAT_NBITCM=$( supergrep nbit_cmp ${CHGFILE} ) |
---|
84 | PAT_TRACEN=$( supergrep ln_traadv_cen2 ${CHGFILE} ) |
---|
85 | PAT_TRATVD=$( supergrep ln_traadv_tvd ${CHGFILE} ) |
---|
86 | PAT_N_CLAA=$( supergrep n_cla ${CHGFILE} ) |
---|
87 | PAT_NSOLVV=$( supergrep nsolv ${CHGFILE} ) |
---|
88 | PAT_RESTAR=$( supergrep ln_rstart ${CHGFILE} ) |
---|
89 | PAT_RESMLD=$( supergrep ln_trdmld_restart ${CHGFILE} ) |
---|
90 | PAT_NAMECF=$( supergrep cexper ${CHGFILE} ) |
---|
91 | |
---|
92 | if [ ${CHGFILE} = 'namelist' ] ; then |
---|
93 | ORCA_NITEND=$(( $ITERATIONS )) |
---|
94 | ORCA_NSTOCK=$(( $NOUTPUT )) |
---|
95 | PAT_NAMECF_tmp=" cexper = \"${CONF}\"" |
---|
96 | else |
---|
97 | ORCA_NITEND=$(( $ITERATIONS*2 )) |
---|
98 | ORCA_NSTOCK=$(( $NOUTPUT*2 )) |
---|
99 | PAT_NAMECF_tmp="$PAT_NAMECF" |
---|
100 | fi |
---|
101 | |
---|
102 | sed -e "s%$PAT_RESTAR% ln_rstart = .false.%" \ |
---|
103 | -e "s%$PAT_NAMECF%$PAT_NAMECF_tmp%" \ |
---|
104 | -e "s%$PAT_NIT000% nit000 = 1 %" \ |
---|
105 | -e "s%$PAT_NITEND% nitend = ${ORCA_NITEND} %" \ |
---|
106 | -e "s%$PAT_NSTOCK% nstock = ${ORCA_NITEND} %" \ |
---|
107 | -e "s%$PAT_NWRITE% nwrite = ${ORCA_NSTOCK} %" \ |
---|
108 | -e "s%$PAT_NRSTDT% nrstdt = 0 %" \ |
---|
109 | -e "s%$PAT_NBITCM% nbit_cmp = 1%" \ |
---|
110 | -e "s%$PAT_TRACEN% ln_traadv_cen2 = .false.%" \ |
---|
111 | -e "s%$PAT_TRATVD% ln_traadv_tvd = .true.%" \ |
---|
112 | -e "s%$PAT_N_CLAA% n_cla = 0%" \ |
---|
113 | -e "s%$PAT_NSOLVV% nsolv = 2%" \ |
---|
114 | -e "s%$PAT_RESMLD% ln_trdmld_restart = .false.%" ${CHGFILE} > nam.$$ |
---|
115 | |
---|
116 | mv nam.$$ ${CHGFILE} && rm -f nam.$$ |
---|
117 | done |
---|
118 | |
---|
119 | # Get forcing files |
---|
120 | ${D_GET} ${D_INPUT}/ORCA2_LIM_nemo_v3.tar ORCA2_LIM_nemo_v3.tar |
---|
121 | tar xvf ORCA2_LIM_nemo_v3.tar |
---|
122 | rm -rf ORCA2_LIM_nemo_v3.tar |
---|
123 | |
---|
124 | # Get restarts files if needed |
---|
125 | if [ $type = '2_short' ] |
---|
126 | then |
---|
127 | if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then |
---|
128 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/ZAGRI*_restart.nc restart.nc |
---|
129 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/1_*restart.nc 1_restart.nc |
---|
130 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/ZAGRI*restart_ice.nc restart_ice_in.nc |
---|
131 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/1_*restart_ice.nc 1_restart_ice_in.nc |
---|
132 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld.nc restart_mld.nc |
---|
133 | fi |
---|
134 | |
---|
135 | if [ ${RUN} = 'mpi' ] ; then |
---|
136 | typeset -Z4 i=0 |
---|
137 | while [ $i -lt $NB_PROCS ] |
---|
138 | do |
---|
139 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/ZAGRI*_restart_${i}.nc restart_${i}.nc |
---|
140 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/1_*restart_${i}.nc 1_restart_${i}.nc |
---|
141 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/ZAGRI*_restart_ice_${i}.nc restart_ice_in_${i}.nc |
---|
142 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/1_*restart_ice_${i}.nc 1_restart_ice_in_${i}.nc |
---|
143 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld_${i}.nc restart_mld_${i}.nc |
---|
144 | let i=$i+1 |
---|
145 | done |
---|
146 | fi |
---|
147 | |
---|
148 | for CHGFILE in `ls *namelist` |
---|
149 | do |
---|
150 | # namelist modifications |
---|
151 | PAT_NIT000=$( supergrep nit000 ${CHGFILE} ) |
---|
152 | PAT_NITEND=$( supergrep nitend ${CHGFILE} ) |
---|
153 | PAT_NRSTDT=$( supergrep nrstdt ${CHGFILE} ) |
---|
154 | PAT_RESTAR=$( supergrep ln_rstart ${CHGFILE} ) |
---|
155 | PAT_RESMLD=$( supergrep ln_trdmld_restart ${CHGFILE} ) |
---|
156 | |
---|
157 | if [ ${CHGFILE} = 'namelist' ] ; then |
---|
158 | ORCA_NIT000=$(( $ITERATIONS + 1 )) |
---|
159 | ORCA_NITEND=$(( $ITERATIONS*2 )) |
---|
160 | else |
---|
161 | ORCA_NIT000=$(( $ITERATIONS*2 + 1 )) |
---|
162 | ORCA_NITEND=$(( $ITERATIONS*4 )) |
---|
163 | fi |
---|
164 | |
---|
165 | sed -e "s%$PAT_RESTAR% ln_rstart = .true.%" \ |
---|
166 | -e "s%$PAT_NIT000% nit000 = $ORCA_NIT000 %" \ |
---|
167 | -e "s%$PAT_NITEND% nitend = $ORCA_NITEND %" \ |
---|
168 | -e "s%$PAT_NRSTDT% nrstdt = 2%" \ |
---|
169 | -e "s%$PAT_RESMLD% ln_trdmld_restart = .true.%" ${CHGFILE} > nam.$$ |
---|
170 | |
---|
171 | mv nam.$$ ${CHGFILE} && rm -f nam.$$ |
---|
172 | done |
---|
173 | |
---|
174 | fi |
---|
175 | |
---|
176 | ############################################################## |
---|
177 | ############################################################## |
---|
178 | ############################################################## |
---|
179 | ### Launch run |
---|
180 | ############################################################## |
---|
181 | ############################################################## |
---|
182 | ############################################################## |
---|
183 | |
---|
184 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_${RUN} opa_${CONF}_${RUN} |
---|
185 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_memo opa_${CONF}_memo |
---|
186 | chmod 777 opa_${CONF}_${RUN} |
---|
187 | chmod 777 opa_${CONF}_memo |
---|
188 | |
---|
189 | # |
---|
190 | # Profiling & Executable memory size |
---|
191 | #################################### |
---|
192 | touch memory_size.txt |
---|
193 | |
---|
194 | case ${RUN} in |
---|
195 | 'mon' ) |
---|
196 | #-T- sx8brodie export F_PROGINF=detail |
---|
197 | #-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt |
---|
198 | #-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt ;; |
---|
199 | #-T- aix ;; |
---|
200 | #-T- ax_mono echo "Stack memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt |
---|
201 | #-T- ax_mono echo "Static memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt ;; |
---|
202 | 'mpi' ) |
---|
203 | #-T- sx8brodie export MPIPROGINF=detail ;; |
---|
204 | #-T- aix ;; |
---|
205 | #-T- ax_mono ;; |
---|
206 | 'omp' ) |
---|
207 | #-T- sx8brodie export F_PROGINF=detail |
---|
208 | #-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} ;; |
---|
209 | #-T- aix ;; |
---|
210 | #-T- ax_mono ;; |
---|
211 | esac |
---|
212 | # |
---|
213 | # >>>>>> EXECUTION < < < < |
---|
214 | ########################## |
---|
215 | |
---|
216 | case ${RUN} in |
---|
217 | 'mon' | 'omp' ) |
---|
218 | ${CPERF} ./opa_${CONF}_${RUN} ;; |
---|
219 | 'mpi' ) |
---|
220 | #-T- sx8brodie ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;; |
---|
221 | #-T- aix ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;; |
---|
222 | esac |
---|
223 | |
---|
224 | ls -l |
---|
225 | # |
---|
226 | |
---|
227 | ############################################################## |
---|
228 | ############################################################## |
---|
229 | ############################################################## |
---|
230 | ### Save output files |
---|
231 | ############################################################## |
---|
232 | ############################################################## |
---|
233 | ############################################################## |
---|
234 | case ${RUN} in |
---|
235 | 'mon' | 'omp' ) |
---|
236 | liste_files=' *abort* memory* *namelist* perfs* solver.stat ocean.output 1_Agulhas* layout* ZAGRIF* restart* mono*' ;; |
---|
237 | 'mpi' ) |
---|
238 | liste_files=' *abort* *namelist* solver.stat perfs* ocean.output* layout* 1_Agulhas* ZAGRIF* restart* mpp*' ;; |
---|
239 | esac |
---|
240 | |
---|
241 | # Ensure that all files saved are coming from the current run |
---|
242 | ind=1 |
---|
243 | for k in $liste_files |
---|
244 | do |
---|
245 | echo $k > temp |
---|
246 | var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) ) |
---|
247 | if [ ${ind} = 1 -a ${var} = 'perf' ] ; then |
---|
248 | kc='perf*' |
---|
249 | rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${kc} |
---|
250 | ind=0 |
---|
251 | fi |
---|
252 | cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/$k |
---|
253 | done |
---|
254 | |
---|
255 | ############################################################## |
---|
256 | ############################################################## |
---|
257 | ############################################################## |
---|
258 | ### Retrieve some reference run files |
---|
259 | ############################################################## |
---|
260 | ############################################################## |
---|
261 | ############################################################## |
---|
262 | if [ ${REF_TAG} ] |
---|
263 | then |
---|
264 | STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT} |
---|
265 | LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err" |
---|
266 | for ref_file in ${LFILES} |
---|
267 | do |
---|
268 | ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/REF/${ref_file} |
---|
269 | done |
---|
270 | fi |
---|
271 | |
---|
272 | ############################################################## |
---|
273 | ############################################################## |
---|
274 | ############################################################## |
---|
275 | ### Launch restart job |
---|
276 | ############################################################## |
---|
277 | ############################################################## |
---|
278 | ############################################################## |
---|
279 | if [ $type = '1_short' ] ; then |
---|
280 | cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT |
---|
281 | ${LAUNCH}job_${RUN}_2_short.ksh |
---|
282 | fi |
---|