[1878] | 1 | # $Id: job_ZAGRIF.ksh 1620 2009-08-12 15:14:22Z ctlod $ |
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| 2 | set -xv |
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| 3 | |
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| 4 | CONF=ZAGRIF |
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| 5 | # Variables changed by lance_batch.ksh script |
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| 6 | RUN=xxx |
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| 7 | NB_PROCS=xxx |
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| 8 | LAUNCH=xxx |
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| 9 | LEXE=xxx |
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| 10 | CPERF=xxx |
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| 11 | D_INPUT=xxx |
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| 12 | D_GET=xxx |
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| 13 | REF_TAG=xxx |
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| 14 | MYO_EXP=xxx |
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| 15 | TSYMB=xxx |
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| 16 | |
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| 17 | # Variables changed by ins_valid.ksh script |
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| 18 | MAINDIR=/workdir/rech/eee/reee534/AUTRE |
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| 19 | WORK=/workdir/rech/eee/reee534/AUTRE/modipsl/config/ |
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| 20 | REF_OD=/u/rech/eee/reee831/NEMO_VALIDATION |
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| 21 | |
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| 22 | # Arguments |
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| 23 | # type = 'long' or '1_short' or '2_short' |
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| 24 | type=$1 |
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| 25 | |
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| 26 | case ${type} in |
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| 27 | 'long' ) |
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| 28 | DIROUT='LONG' |
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| 29 | ITERATIONS=300 |
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| 30 | NOUTPUT=75 ;; |
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| 31 | |
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| 32 | '1_short' ) |
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| 33 | DIROUT='1_SHORT' |
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| 34 | ITERATIONS=150 |
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| 35 | NOUTPUT=75 ;; |
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| 36 | |
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| 37 | '2_short' ) |
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| 38 | DIROUT='2_SHORT' |
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| 39 | ITERATIONS=150 |
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| 40 | NOUTPUT=75 ;; |
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| 41 | |
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| 42 | 'gtime' ) |
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| 43 | DIROUT='GTIME' |
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| 44 | ITERATIONS=5475 |
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| 45 | NOUTPUT=75 ;; |
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| 46 | esac |
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| 47 | |
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| 48 | # Working directory |
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| 49 | cd ${TMPDIR} |
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| 50 | |
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| 51 | ############################################################## |
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| 52 | ############################################################## |
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| 53 | ############################################################## |
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| 54 | ### Input files |
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| 55 | ############################################################## |
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| 56 | ############################################################## |
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| 57 | ############################################################## |
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| 58 | # Local function to copy namelists files |
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| 59 | get_namelist () { |
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| 60 | if [ -a $1/$2_$3 ] ; then |
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| 61 | cp $1/$2_$3 $4 |
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| 62 | else |
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| 63 | echo ' ###############################################################' |
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| 64 | echo ' ######################## W A R N I N G ########################' |
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| 65 | echo ' ######################## W A R N I N G ########################' |
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| 66 | echo ' ######################## W A R N I N G ########################' |
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| 67 | echo ' ###############################################################' |
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| 68 | echo " $2_$3 file doesn't exist, we use the standard $2" |
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| 69 | echo ' ###############################################################' |
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| 70 | echo ' ######################## W A R N I N G ########################' |
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| 71 | echo ' ######################## W A R N I N G ########################' |
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| 72 | echo ' ######################## W A R N I N G ########################' |
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| 73 | echo ' ###############################################################' |
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| 74 | cp $1/$2 $4 |
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| 75 | fi |
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| 76 | } |
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| 77 | |
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| 78 | # Local function to find namelists parameters |
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| 79 | supergrep () { |
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| 80 | grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" |
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| 81 | } |
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| 82 | |
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| 83 | # Ocean namelist |
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| 84 | LOC_NAM=${MAINDIR}/modipsl/config/${CONF}/EXP00 |
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| 85 | get_namelist ${LOC_NAM} namelist ${MYO_EXP} namelist |
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| 86 | get_namelist ${LOC_NAM} 1_namelist ${MYO_EXP} 1_namelist |
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| 87 | |
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| 88 | # Sea-Ice namelist |
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| 89 | get_namelist ${LOC_NAM} namelist_ice_lim2 ${MYO_EXP} namelist_ice |
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| 90 | get_namelist ${LOC_NAM} 1_namelist_ice_lim2 ${MYO_EXP} 1_namelist_ice |
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| 91 | |
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| 92 | # AGRIF file |
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| 93 | cp ${LOC_NAM}/AGRIF_FixedGrids.in AGRIF_FixedGrids.in |
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| 94 | |
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| 95 | # Local function to find namelists parameters |
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| 96 | supergrep () { |
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| 97 | grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" |
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| 98 | } |
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| 99 | |
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| 100 | for CHGFILE in `ls *namelist` |
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| 101 | do |
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| 102 | # namelist modifications |
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| 103 | PAT_NIT000=$( supergrep nn_it000 ${CHGFILE} ) |
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| 104 | PAT_NITEND=$( supergrep nn_itend ${CHGFILE} ) |
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| 105 | PAT_NSTOCK=$( supergrep nn_stock ${CHGFILE} ) |
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| 106 | PAT_NWRITE=$( supergrep nn_write ${CHGFILE} ) |
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| 107 | PAT_NRSTDT=$( supergrep nn_rstctl ${CHGFILE} ) |
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| 108 | PAT_NBITCM=$( supergrep nn_bit_cmp ${CHGFILE} ) |
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| 109 | PAT_TRACEN=$( supergrep ln_traadv_cen2 ${CHGFILE} ) |
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| 110 | PAT_TRATVD=$( supergrep ln_traadv_tvd ${CHGFILE} ) |
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| 111 | PAT_N_CLAA=$( supergrep nn_cla ${CHGFILE} ) |
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| 112 | PAT_NSOLVV=$( supergrep nn_solv ${CHGFILE} ) |
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| 113 | PAT_RESTAR=$( supergrep ln_rstart ${CHGFILE} ) |
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| 114 | PAT_RESMLD=$( supergrep ln_trdmld_restart ${CHGFILE} ) |
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| 115 | PAT_NAMECF=$( supergrep cn_exp ${CHGFILE} ) |
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| 116 | PAT_NN_FWB=$( supergrep nn_fwb ${CHGFILE} ) |
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| 117 | PAT_NNSSSR=$( supergrep nn_sssr ${CHGFILE} ) |
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| 118 | |
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| 119 | if [ ${CHGFILE} = 'namelist' ] ; then |
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| 120 | ORCA_NITEND=$(( $ITERATIONS )) |
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| 121 | ORCA_NSTOCK=$(( $NOUTPUT )) |
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| 122 | PAT_NAMECF_tmp=" cn_exp = \"${CONF}\"" |
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| 123 | else |
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| 124 | ORCA_NITEND=$(( $ITERATIONS*2 )) |
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| 125 | ORCA_NSTOCK=$(( $NOUTPUT*2 )) |
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| 126 | PAT_NAMECF_tmp="$PAT_NAMECF" |
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| 127 | fi |
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| 128 | |
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| 129 | sed -e "s%$PAT_RESTAR% ln_rstart = .false.%" \ |
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| 130 | -e "s%$PAT_NAMECF%$PAT_NAMECF_tmp%" \ |
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| 131 | -e "s%$PAT_NIT000% nn_it000 = 1 %" \ |
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| 132 | -e "s%$PAT_NITEND% nn_itend = ${ORCA_NITEND} %" \ |
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| 133 | -e "s%$PAT_NSTOCK% nn_stock = ${ORCA_NITEND} %" \ |
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| 134 | -e "s%$PAT_NWRITE% nn_write = ${ORCA_NSTOCK} %" \ |
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| 135 | -e "s%$PAT_NRSTDT% nn_rstctl = 0 %" \ |
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| 136 | -e "s%$PAT_NBITCM% nn_bit_cmp = 1%" \ |
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| 137 | -e "s%$PAT_TRACEN% ln_traadv_cen2 = .false.%" \ |
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| 138 | -e "s%$PAT_TRATVD% ln_traadv_tvd = .true.%" \ |
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| 139 | -e "s%$PAT_N_CLAA% nn_cla = 0%" \ |
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| 140 | -e "s%$PAT_NSOLVV% nn_solv = 2%" \ |
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| 141 | -e "s%$PAT_NN_FWB% nn_fwb = 0%" \ |
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| 142 | -e "s%$PAT_NNSSSR% nn_sssr = 1%" \ |
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| 143 | -e "s%$PAT_RESMLD% ln_trdmld_restart = .false.%" ${CHGFILE} > nam.$$ |
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| 144 | |
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| 145 | mv nam.$$ ${CHGFILE} && rm -f nam.$$ |
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| 146 | done |
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| 147 | |
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| 148 | # Get forcing files |
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| 149 | ${D_GET} ${D_INPUT}/ORCA2_LIM_nemo_v3.1.tar ORCA2_LIM_nemo_v3.1.tar |
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| 150 | tar xvf ORCA2_LIM_nemo_v3.1.tar |
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| 151 | rm -f ORCA2_LIM_nemo_v3.1.tar |
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| 152 | |
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| 153 | # Get restarts files if needed |
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| 154 | if [ $type = '2_short' ] |
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| 155 | then |
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| 156 | if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then |
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| 157 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/ZAGRI*_restart.nc restart.nc |
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| 158 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/1_*restart.nc 1_restart.nc |
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| 159 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/ZAGRI*restart_ice.nc restart_ice_in.nc |
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| 160 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/1_*restart_ice.nc 1_restart_ice_in.nc |
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| 161 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart_mld.nc restart_mld.nc |
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| 162 | fi |
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| 163 | |
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| 164 | if [ ${RUN} = 'mpi' ] ; then |
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| 165 | typeset -Z4 i=0 |
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| 166 | while [ $i -lt $NB_PROCS ] |
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| 167 | do |
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| 168 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/ZAGRI*_restart_${i}.nc restart_${i}.nc |
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| 169 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/1_*restart_${i}.nc 1_restart_${i}.nc |
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| 170 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/ZAGRI*_restart_ice_${i}.nc restart_ice_in_${i}.nc |
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| 171 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/1_*restart_ice_${i}.nc 1_restart_ice_in_${i}.nc |
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| 172 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart_mld_${i}.nc restart_mld_${i}.nc |
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| 173 | let i=$i+1 |
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| 174 | done |
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| 175 | fi |
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| 176 | |
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| 177 | for CHGFILE in `ls *namelist` |
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| 178 | do |
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| 179 | # namelist modifications |
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| 180 | PAT_NIT000=$( supergrep nn_it000 ${CHGFILE} ) |
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| 181 | PAT_NITEND=$( supergrep nn_itend ${CHGFILE} ) |
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| 182 | PAT_NRSTDT=$( supergrep nn_rstctl ${CHGFILE} ) |
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| 183 | PAT_RESTAR=$( supergrep ln_rstart ${CHGFILE} ) |
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| 184 | PAT_RESMLD=$( supergrep ln_trdmld_restart ${CHGFILE} ) |
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| 185 | |
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| 186 | if [ ${CHGFILE} = 'namelist' ] ; then |
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| 187 | ORCA_NIT000=$(( $ITERATIONS + 1 )) |
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| 188 | ORCA_NITEND=$(( $ITERATIONS*2 )) |
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| 189 | else |
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| 190 | ORCA_NIT000=$(( $ITERATIONS*2 + 1 )) |
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| 191 | ORCA_NITEND=$(( $ITERATIONS*4 )) |
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| 192 | fi |
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| 193 | |
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| 194 | sed -e "s%$PAT_RESTAR% ln_rstart = .true.%" \ |
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| 195 | -e "s%$PAT_NIT000% nn_it000 = $ORCA_NIT000 %" \ |
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| 196 | -e "s%$PAT_NITEND% nn_itend = $ORCA_NITEND %" \ |
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| 197 | -e "s%$PAT_NRSTDT% nn_rstctl = 2%" \ |
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| 198 | -e "s%$PAT_RESMLD% ln_trdmld_restart = .true.%" ${CHGFILE} > nam.$$ |
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| 199 | |
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| 200 | mv nam.$$ ${CHGFILE} && rm -f nam.$$ |
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| 201 | done |
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| 202 | |
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| 203 | fi |
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| 204 | |
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| 205 | ############################################################## |
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| 206 | ############################################################## |
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| 207 | ############################################################## |
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| 208 | ### Launch run |
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| 209 | ############################################################## |
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| 210 | ############################################################## |
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| 211 | ############################################################## |
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| 212 | |
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| 213 | cp ${MAINDIR}/modipsl/bin/opa_${CONF}_${RUN}_${MYO_EXP} opa_${CONF}_${RUN}_${MYO_EXP} |
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| 214 | cp ${MAINDIR}/modipsl/bin/opa_${CONF}_memo_${MYO_EXP} opa_${CONF}_memo_${MYO_EXP} |
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| 215 | chmod 777 opa_${CONF}_${RUN}_${MYO_EXP} |
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| 216 | chmod 777 opa_${CONF}_memo_${MYO_EXP} |
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| 217 | |
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| 218 | # |
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| 219 | # Profiling & Executable memory size |
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| 220 | #################################### |
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| 221 | touch memory_size.txt |
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| 222 | |
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| 223 | case ${RUN} in |
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| 224 | 'mon' ) |
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| 225 | #-T- sx8brodie export F_PROGINF=detail |
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| 226 | #-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}_${MYO_EXP}) )" >> memory_size.txt |
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| 227 | #-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo_${MYO_EXP}) )" >> memory_size.txt ;; |
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| 228 | #-T- sx8mercure export F_PROGINF=detail |
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| 229 | #-T- sx8mercure echo "Stack memory: $( (size opa_${CONF}_${RUN}_${MYO_EXP}) )" >> memory_size.txt |
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| 230 | #-T- sx8mercure echo "Static memory: $( (size opa_${CONF}_memo_${MYO_EXP}) )" >> memory_size.txt ;; |
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| 231 | #-T- aix6 echo "Stack memory: $( (size opa_${CONF}_memo_${MYO_EXP}) )" >> memory_size.txt |
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| 232 | #-T- aix6 echo "Static memory: $( (size opa_${CONF}_${RUN}_${MYO_EXP}) )" >> memory_size.txt ;; |
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| 233 | 'mpi' ) |
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| 234 | #-T- sx8brodie export MPIPROGINF=detail ;; |
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| 235 | #-T- sx8mercure export MPIPROGINF=detail ;; |
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| 236 | #-T- aix6 ;; |
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| 237 | 'omp' ) |
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| 238 | #-T- sx8brodie export F_PROGINF=detail |
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| 239 | #-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} ;; |
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| 240 | #-T- sx8mercure export F_PROGINF=detail |
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| 241 | #-T- sx8mercure export OMP_NUM_THREADS=${NB_PROCS} ;; |
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| 242 | #-T- aix6 ;; |
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| 243 | esac |
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| 244 | # |
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| 245 | # >>>>>> EXECUTION < < < < |
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| 246 | ########################## |
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| 247 | |
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| 248 | case ${RUN} in |
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| 249 | 'mon' | 'omp' ) |
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| 250 | ${CPERF} ./opa_${CONF}_${RUN}_${MYO_EXP} ;; |
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| 251 | 'mpi' ) |
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| 252 | #-T- sx8brodie ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}_${MYO_EXP} ;; |
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| 253 | #-T- sx8mercure ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}_${MYO_EXP} ;; |
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| 254 | #-T- aix6 ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}_${MYO_EXP} ;; |
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| 255 | esac |
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| 256 | |
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| 257 | ls -l |
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| 258 | # |
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| 259 | |
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| 260 | ############################################################## |
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| 261 | ############################################################## |
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| 262 | ############################################################## |
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| 263 | ### Save output files |
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| 264 | ############################################################## |
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| 265 | ############################################################## |
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| 266 | ############################################################## |
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| 267 | case ${RUN} in |
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| 268 | 'mon' | 'omp' ) |
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| 269 | liste_files=' *abort* memory* *namelist* perfs* solver.stat ocean.output 1_Agulhas* layout* ZAGRIF* restart* mono*' ;; |
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| 270 | 'mpi' ) |
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| 271 | liste_files=' *abort* *namelist* solver.stat perfs* ocean.output* layout* 1_Agulhas* ZAGRIF* restart* mpp*' ;; |
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| 272 | esac |
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| 273 | |
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| 274 | # Ensure that all files saved are coming from the current run |
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| 275 | ind=1 |
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| 276 | for k in $liste_files |
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| 277 | do |
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| 278 | echo $k > temp |
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| 279 | var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) ) |
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| 280 | if [ ${ind} = 1 -a ${var} = 'perf' ] ; then |
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| 281 | kc='perf*' |
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| 282 | rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${MYO_EXP}/${kc} |
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| 283 | ind=0 |
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| 284 | fi |
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| 285 | cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${MYO_EXP}/$k |
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| 286 | done |
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| 287 | |
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| 288 | ############################################################## |
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| 289 | ############################################################## |
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| 290 | ############################################################## |
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| 291 | ### Retrieve some reference run files |
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| 292 | ############################################################## |
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| 293 | ############################################################## |
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| 294 | ############################################################## |
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| 295 | if [ ${REF_TAG} = 'nemo_v2' -o ${REF_TAG} = 'nemo_v2_3' -o ${REF_TAG} = 'nemo_v3' ] |
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| 296 | then |
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| 297 | STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT} |
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| 298 | LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err" |
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| 299 | SAV_DIR=${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${REF_TAG} |
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| 300 | if [ ! -d ${SAV_DIR} ] ; then |
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| 301 | mkdir ${SAV_DIR} |
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| 302 | fi |
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| 303 | for ref_file in ${LFILES} |
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| 304 | do |
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| 305 | ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${SAV_DIR}/${ref_file} |
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| 306 | done |
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| 307 | fi |
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| 308 | |
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| 309 | ############################################################## |
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| 310 | ############################################################## |
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| 311 | ############################################################## |
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| 312 | ### Launch restart job |
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| 313 | ############################################################## |
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| 314 | ############################################################## |
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| 315 | ############################################################## |
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| 316 | if [ $type = '1_short' ] ; then |
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| 317 | cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT/${MYO_EXP} |
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| 318 | ${LAUNCH}job_${RUN}_2_short_${MYO_EXP}.ksh |
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| 319 | fi |
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