[207] | 1 | #-Q- sxnec ################## |
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| 2 | #-Q- sxnec ## SXNEC IDRIS |
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| 3 | #-Q- sxnec ################## |
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| 4 | #-Q- sxnec #@$-r :XXX:XXX:XXX: # job name |
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| 5 | #-Q- sxnec #@$-o output_XXXXXXX.1 # outputfile name |
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| 6 | #-Q- sxnec #@$-me # sends a mail at the end of execution |
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| 7 | #-Q- sxnec #@$-eo # merge standard error and output |
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| 8 | #-Q- sxnec #@$-jo # print a short performance analysis |
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| 9 | #-Q- sxnec #@$-lT 00:30:00 # Max total CPU time |
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| 10 | #-Q- sxnec #@$-lt 00:30:00 # Max CPU time per process |
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| 11 | #-Q- sxnec #@$-lM 500Mb # Max memory |
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| 12 | #-Q- sxnec ##@$-c 4 # Max number of simultaneous procs used (here=4) |
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| 13 | #-Q- sxnec ##@$-q multi # Use more than 1 proc |
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| 14 | #-Q- aix ################## |
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| 15 | #-Q- aix ## IBM IDRIS ## |
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| 16 | #-Q- aix ################## |
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| 17 | #-Q- aix #@job_name= :XXX:XXX:XXX: |
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| 18 | #-Q- aix #@output= output_XXXXXXX.1 |
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| 19 | #-Q- aix #@error= error_XXXXXXX.1 |
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| 20 | #-Q- aix #@cpu_limit= 1800 |
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| 21 | #-Q- aix #@stack_limit= 200Mb |
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| 22 | #-Q- aix #@data_limit= 1.8Gb |
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| 23 | #-Q- aix #@notification= complete |
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| 24 | #-Q- aix #@total_tasks= 1 |
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| 25 | #-Q- aix #@job_type= parallel |
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| 26 | #-Q- aix #@queue |
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[573] | 27 | #-Q- sx8brodie ################## |
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| 28 | #-Q- sx8brodie ## SX8NEC IDRIS ## |
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| 29 | #-Q- sx8brodie ################## |
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| 30 | #-Q- sx8brodie #PBS -N :XXX:XXX:XXX: # job name |
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| 31 | #-Q- sx8brodie #PBS -o output_XXXXXXX.1 # outputfile name |
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| 32 | #-Q- sx8brodie #PBS -j o # merge standard error and output |
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| 33 | #-Q- sx8brodie #PBS -S /usr/bin/ksh # user shell |
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| 34 | #-Q- sx8brodie #PBS -l memsz_job=3.6gb # Max memory |
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| 35 | #-Q- sx8brodie #PBS -l cputim_prc=1:01:00 # Max CPU time/prc |
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| 36 | #-Q- sx8brodie #PBS -l cputim_job=1:01:00 # Max CPU time/job |
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[590] | 37 | #-Q- sx8brodie ##PBS -l cpunum_job=4 |
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[573] | 38 | #-Q- sx8brodie ##PBS -q multi |
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[1354] | 39 | #-Q- sx8mercure ################## |
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| 40 | #-Q- sx8mercure ## SX8NEC CEA ## |
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| 41 | #-Q- sx8mercure ################## |
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| 42 | #-Q- sx8mercure #PBS -N :XXX:XXX:XXX: # job name |
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| 43 | #-Q- sx8mercure #PBS -o output_XXXXXXX.1 # outputfile name |
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| 44 | #-Q- sx8mercure #PBS -j o # merge standard error and output |
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| 45 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # user shell |
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| 46 | #-Q- sx8mercure #PBS -l memsz_job=500mb # Max memory |
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| 47 | #-Q- sx8mercure #PBS -l cputim_job=00:30:00 # Max CPU time |
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| 48 | #-Q- sx8mercure ##PBS -l cpunum_job=4 |
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[102] | 49 | ######################################################################## |
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| 50 | ## |
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[207] | 51 | ## Script to run a short experiment when installing the |
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| 52 | ## GYRE configuration |
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[102] | 53 | ## |
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[207] | 54 | ## Rachid Benshila, OPA System Team |
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[102] | 55 | ## |
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| 56 | ## |
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| 57 | ######################################################################### |
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| 58 | ##-- print echo of commands before and after shell interpretation |
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| 59 | date |
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| 60 | set -vx |
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| 61 | |
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[207] | 62 | ################################# |
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| 63 | # Beginning of user modification |
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| 64 | ################################# |
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[102] | 65 | |
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[213] | 66 | ##-- define some directories: |
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[207] | 67 | #- Launching run repository |
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| 68 | #-Q- sxnec R_EXPER=${QSUB_WORKDIR:-${PWD}} |
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[573] | 69 | #-Q- sx8brodie R_EXPER=${PBS_O_WORKDIR} |
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[207] | 70 | #-Q- aix R_EXPER=${QSUB_WORKDIR:-${PWD}} |
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[1354] | 71 | #-Q- sx8mercure R_EXPER=${PWD} |
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[207] | 72 | #- modipsl repository |
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| 73 | R_EXEDIR=MMMMMMM |
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| 74 | #- output files storing |
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[213] | 75 | R_SORTIE_OCE=AAAAAAA/GYRE |
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[207] | 76 | #- execution repository |
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| 77 | R_TMP=$TMPDIR |
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[102] | 78 | |
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[207] | 79 | ################################# |
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| 80 | # End of user modification |
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| 81 | ################################# |
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[102] | 82 | |
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[207] | 83 | [ -d ${R_TMP} ] || mkdir ${R_TMP} |
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| 84 | cd ${R_TMP} |
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[102] | 85 | |
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[207] | 86 | #-- get the executable |
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| 87 | #-Q- sxnec rcp ${LOGNAME}@rhodes:${R_EXEDIR}/bin/opa opa.xx |
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[573] | 88 | #-Q- sx8brodie rcp ${LOGNAME}@brodie:${R_EXEDIR}/bin/opa opa.xx |
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[207] | 89 | #-Q- aix cp ${R_EXEDIR}/bin/opa opa.xx |
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[1354] | 90 | #-Q- sx8mercure cp ${R_EXEDIR}/bin/opa opa.xx |
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[207] | 91 | chmod 777 opa.xx |
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[102] | 92 | |
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[207] | 93 | ## -- Copy ancillary files |
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[102] | 94 | # |
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[207] | 95 | #- Namelist for the configuration |
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| 96 | cp ${R_EXPER}/namelist namelist |
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[102] | 97 | ls -alF |
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| 98 | |
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[207] | 99 | #-Q- sxnec export F_PROGINF=yes |
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| 100 | #-Q- sxnec export F_ERRCNT=5 |
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[573] | 101 | #-Q- sx8brodie export F_PROGINF=yes |
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| 102 | #-Q- sx8brodie export F_ERRCNT=5 |
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[1354] | 103 | #-Q- sx8mercure export F_PROGINF=yes |
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| 104 | #-Q- sx8mercure export F_ERRCNT=5 |
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[102] | 105 | |
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[213] | 106 | #-Q- sxnec #- To be use for a mpp run |
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| 107 | #-Q- sxnec #mpirun -np ${NB_PROC} ./opa.xx |
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[573] | 108 | #-Q- sx8brodie #- To be use for a mpp run |
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| 109 | #-Q- sx8brodie #mpirun -np ${NB_PROC} ./opa.xx |
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[1354] | 110 | #-Q- sx8mercure #- To be use for a mpp run |
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| 111 | #-Q- sx8mercure #mpirun -np ${NB_PROC} ./opa.xx |
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[213] | 112 | |
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[207] | 113 | ./opa.xx |
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[102] | 114 | |
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[207] | 115 | ## -- Save output files |
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[102] | 116 | ls -alF |
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[207] | 117 | #- to copy on a storage machine |
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| 118 | #-Q- sxnec DPUT=mfput |
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[573] | 119 | #-Q- sx8brodie DPUT=mfput |
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[207] | 120 | #-Q- aix DPUT=mfput |
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[1354] | 121 | #-Q- sx8mercure DPUT=cp |
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| 122 | #-Q- sx8mercure [ -d ${R_SORTIE_OCE} ] || mkdir -p ${R_SORTIE_OCE} |
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[102] | 123 | |
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[207] | 124 | #- Save ocean output files |
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| 125 | $DPUT ocean.output ${R_SORTIE_OCE}/ocean.output |
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| 126 | $DPUT solver.stat ${R_SORTIE_OCE}/solver.stat |
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[241] | 127 | [ -f mpp.output* ] && $DPUT mpp.output* ${R_SORTIE_OCE}/. |
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[207] | 128 | for file_netcdf in *_grid_*.nc |
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| 129 | do |
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| 130 | $DPUT $file_netcdf ${R_SORTIE_OCE}/$file_netcdf |
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| 131 | done |
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[102] | 132 | # |
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[207] | 133 | #- Save restart files |
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| 134 | for restart in *restart* |
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| 135 | do |
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| 136 | $DPUT $restart ${R_SORTIE_OCE}/$restart |
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| 137 | done |
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[102] | 138 | # |
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[207] | 139 | #- Save ftrace file |
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[241] | 140 | [ -f ftrace.out* ] && $DPUT ftrace.out* ${R_SORTIE_OCE}/. |
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