[1451] | 1 | <?xml version="1.0"?> |
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| 2 | |
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[1626] | 3 | <simulation> |
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| 4 | |
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| 5 | <context id="nemo"> |
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[1451] | 6 | |
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[1626] | 7 | <!-- groups of variables definition --> |
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| 8 | |
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| 9 | <field_definition level="1" prec="4" operation="ave(X)" freq_op="7200" enabled=".TRUE."> |
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| 10 | |
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| 11 | <!-- T grid --> |
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| 12 | |
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| 13 | <group id="grid_T" axis_ref="none" grid_ref="grid_T"> |
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| 14 | <field id="toce" description="temperature" unit="degC" axis_ref="deptht" /> |
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| 15 | <field id="soce" description="salinity" unit="psu" axis_ref="deptht" /> |
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| 16 | <field id="sst" description="sea surface temperature" unit="degC" /> |
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| 17 | <field id="sss" description="sea surface salinity" unit="psu" /> |
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| 18 | <field id="ssh" description="sea surface height" unit="m" /> |
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| 19 | <field id="mldkz5" description="mixing layer depth (Turbocline)" unit="m" /> |
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| 20 | <field id="mldr10_1" description="Mixed Layer Depth 0.01 ref.10m" unit="m" /> |
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| 21 | <!-- next variables available with key_diahth --> |
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| 22 | <field id="mlddzt" description="Thermocline Depth (max dT/dz)" unit="m" /> |
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| 23 | <field id="mldr10_3" description="Mixed Layer Depth dr=0.03 (ref.10m)" unit="m" /> |
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| 24 | <field id="mldr0_1" description="Mixed Layer Depth dr=0.01 (ref.surf)" unit="m" /> |
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[1681] | 25 | <field id="mldr0_3" description="Mixed Layer Depth dr=0.03 (ref.surf)" unit="m" /> |
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[1626] | 26 | <field id="mld|dt|" description="Mixed Layer Depth |dt|=0.2 (ref.10m)" unit="m" /> |
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| 27 | <field id="topthdep" description="Top of the thermocline dt=-0.2 (ref.10m)" unit="m" /> |
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| 28 | <field id="pycndep" description="Pycnocline depth dr~dt=-0.2 (ref.10m)" unit="m" /> |
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| 29 | <field id="BLT" description="Barrier Layer Thickness" unit="m" /> |
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| 30 | <field id="tinv" description="Max of vertical invertion of temperature" unit="degC" /> |
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| 31 | <field id="depti" description="Depth of max. vert. inv. of temperature" unit="m" /> |
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| 32 | <field id="20d" description="Depth of 20C isotherm" unit="m" /> |
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| 33 | <field id="28d" description="Depth of 28C isotherm" unit="m" /> |
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| 34 | <field id="hc300" description="Heat content 300 m" unit="W" /> |
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[1451] | 35 | </group> |
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| 36 | |
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[1626] | 37 | <!-- SBC --> |
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| 38 | |
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| 39 | <group id="SBC" axis_ref="none" grid_ref="grid_T"> |
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| 40 | <field id="emp" description="Net Upward Water Flux" unit="kg/m2/s" /> |
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| 41 | <field id="emps" description="concentration/dilution water flux" unit="kg/m2/s" /> |
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| 42 | <field id="qns+qsr" description="Net Downward Heat Flux" unit="W/m2" /> |
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| 43 | <field id="qns" description="non solar Downward Heat Flux" unit="W/m2" /> |
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| 44 | <field id="qsr" description="Shortwave Radiation" unit="W/m2" /> |
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[1705] | 45 | <field id="taum" description="wind stress module" unit="N/m2" /> |
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[1650] | 46 | <field id="wspd" description="Wind speed module at 10 m " unit="m/s" /> |
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[1626] | 47 | <field id="qrp" description="Surface Heat Flux: Damping" unit="W/m2" /> |
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| 48 | <field id="erp" description="Surface Water Flux: Damping" unit="Kg/m2/s" /> |
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| 49 | </group> |
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| 50 | |
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| 51 | <!-- U grid --> |
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| 52 | |
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[1704] | 53 | <group id="grid_U" axis_ref="depthu" grid_ref="grid_U"> |
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[1626] | 54 | <field id="utau" description="Wind Stress along i-axis" unit="N/m2" axis_ref="none" /> |
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| 55 | <field id="uoce" description="ocean current along i-axis" unit="m/s" /> |
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| 56 | <field id="uoce_eff" description="Effective ocean current along i-axis" unit="m/s" /> |
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| 57 | <!-- uoce_eiv: available with key_traldf_eiv and key_diaeiv --> |
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| 58 | <field id="uoce_eiv" description="EIV ocean current along i-axis" unit="m/s" /> |
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| 59 | <!-- uoce_eiv: available with key_trabbl_adv --> |
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| 60 | <field id="uoce_bbl" description="BBL ocean current along i-axis" unit="m/s" /> |
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[1451] | 61 | </group> |
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[1626] | 62 | |
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| 63 | <!-- V grid --> |
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| 64 | |
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[1704] | 65 | <group id="grid_V" axis_ref="depthv" grid_ref="grid_V"> |
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[1626] | 66 | <field id="vtau" description="Wind Stress along j-axis" unit="N/m2" axis_ref="none" /> |
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| 67 | <field id="voce" description="ocean current along j-axis" unit="m/s" /> |
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| 68 | <field id="voce_eff" description="Effective ocean current along j-axis" unit="m/s" /> |
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| 69 | <!-- voce_eiv: available with key_traldf_eiv and key_diaeiv --> |
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| 70 | <field id="voce_eiv" description="EIV ocean current along j-axis" unit="m/s" /> |
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| 71 | <!-- voce_eiv: available with key_trabbl_adv --> |
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| 72 | <field id="voce_bbl" description="BBL ocean current along j-axis" unit="m/s" /> |
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[1451] | 73 | </group> |
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[1626] | 74 | |
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| 75 | <!-- W grid --> |
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| 76 | |
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[1451] | 77 | <group id="grid_W" axis_ref="depthw" grid_ref="grid_W"> |
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[1626] | 78 | <field id="woce" description="ocean vertical velocity" unit="m/s" /> |
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| 79 | <field id="woce_eff" description="effective ocean vertical velocity" unit="m/s" /> |
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| 80 | <!-- woce_eiv: available with key_traldf_eiv and key_diaeiv --> |
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| 81 | <field id="woce_eiv" description="EIV ocean vertical velocity" unit="m/s" /> |
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| 82 | <!-- woce_eiv: available with key_trabbl_adv --> |
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| 83 | <field id="woce_bbl" description="BBL ocean vertical velocity" unit="m/s" /> |
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| 84 | |
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| 85 | <field id="avt" description="vertical eddy diffusivity" unit="m2/s" /> |
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| 86 | <field id="avm" description="vertical eddy viscosity" unit="m2/s" /> |
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| 87 | <!-- avs: available with key_zdfddm --> |
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| 88 | <field id="avs" description="salt vertical eddy diffusivity" unit="m2/s" /> |
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| 89 | <!-- avt_evd and avm_evd: available with ln_zdfevd --> |
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| 90 | <field id="avt_evd" description="enhanced vertical diffusivity" unit="m2/s" /> |
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| 91 | <field id="avm_evd" description="enhanced vertical viscosity" unit="m2/s" /> |
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| 92 | <!-- aht2d and aht2d_eiv: available with key_traldf_eiv and key_traldf_c2d --> |
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| 93 | <field id="aht2d" description="lateral eddy diffusivity" unit="m2/s" axis_ref="none" /> |
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| 94 | <field id="aht2d_eiv" description="EIV lateral eddy diffusivity" unit="m2/s" axis_ref="none" /> |
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[1681] | 95 | <!-- avt_tide: available with key_zdftmx --> |
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| 96 | <field id="av_tide" description="tidal vertical diffusivity" unit="m2/s" /> |
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[1451] | 97 | </group> |
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| 98 | |
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[1704] | 99 | |
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| 100 | <!-- ptrc on T grid --> |
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| 101 | |
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| 102 | <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> |
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| 103 | <field id="DET" description="Detritus" unit="mmole-N/m3" /> |
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| 104 | <field id="ZOO" description="Zooplankton Concentration" unit="mmole-N/m3" /> |
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| 105 | <field id="PHY" description="Phytoplankton Concentration" unit="mmole-N/m3" /> |
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| 106 | <field id="NO3" description="Nitrate Concentration" unit="mmole-N/m3" /> |
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| 107 | <field id="NH4" description="Ammonium Concentration" unit="mmole-N/m3" /> |
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| 108 | <field id="DOM" description="Dissolved Organic Matter" unit="mmole-N/m3" /> |
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| 109 | </group> |
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| 110 | |
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| 111 | <!-- diad on T grid --> |
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| 112 | |
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[1451] | 113 | <group id="diad_T" axis_ref="none" grid_ref="grid_T"> |
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[1458] | 114 | <field id="FNO3PHY" description="FNO3PHY" unit="-" axis_ref="deptht" /> |
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| 115 | <field id="FNH4PHY" description="FNH4PHY" unit="-" axis_ref="deptht" /> |
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| 116 | <field id="FNH4NO3" description="FNH4NO3" unit="-" axis_ref="deptht" /> |
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[1451] | 117 | <field id="TNO3PHY" description="TNO3PHY" unit="-" /> |
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| 118 | <field id="TNH4PHY" description="TNH4PHY" unit="-" /> |
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| 119 | <field id="TPHYDOM" description="TPHYDOM" unit="-" /> |
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| 120 | <field id="TPHYNH4" description="TPHYNH4" unit="-" /> |
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| 121 | <field id="TPHYZOO" description="TPHYZOO" unit="-" /> |
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| 122 | <field id="TPHYDET" description="TPHYDET" unit="-" /> |
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| 123 | <field id="TDETZOO" description="TDETZOO" unit="-" /> |
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| 124 | <field id="TDETSED" description="TDETSED" unit="-" /> |
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| 125 | <field id="TZOODET" description="TZOODET" unit="-" /> |
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| 126 | <field id="TZOOBOD" description="TZOOBOD" unit="-" /> |
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| 127 | <field id="TZOONH4" description="TZOONH4" unit="-" /> |
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| 128 | <field id="TZOODOM" description="TZOODOM" unit="-" /> |
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| 129 | <field id="TNH4NO3" description="TNH4NO3" unit="-" /> |
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| 130 | <field id="TDOMNH4" description="TDOMNH4" unit="-" /> |
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| 131 | <field id="TDETNH4" description="TDETNH4" unit="-" /> |
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| 132 | <field id="TPHYTOT" description="TPHYTOT" unit="-" /> |
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| 133 | <field id="TZOOTOT" description="TZOOTOT" unit="-" /> |
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| 134 | <field id="TDETDOM" description="TDETDOM" unit="-" /> |
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| 135 | <field id="SEDPOC" description="SEDPOC" unit="-" /> |
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| 136 | </group> |
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| 137 | |
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| 138 | </field_definition> |
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| 139 | |
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| 140 | <!-- file definition --> |
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| 141 | |
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| 142 | <file_definition output_level="10" enabled=".TRUE."> |
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| 143 | |
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| 144 | <file id="GYREL_1m_grid_T" description="ocean T grid variables" output_freq="2592000" output_level="5" > |
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[1626] | 145 | <field ref="toce" name="votemper" /> |
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| 146 | <field ref="soce" name="vosaline" /> |
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| 147 | <field ref="sst" name="sosstsst" /> |
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| 148 | <field ref="sss" name="sosaline" /> |
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| 149 | <field ref="ssh" name="sossheig" /> |
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| 150 | <field ref="emp" name="sowaflup" /> |
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| 151 | <field ref="qsr" name="soshfldo" /> |
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| 152 | <field ref="emps" name="sowaflcd" /> |
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| 153 | <field ref="qns+qsr" name="sohefldo" /> |
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| 154 | <field ref="mldr10_1" name="somxl010" /> |
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| 155 | <field ref="mldkz5" name="somixhgt" /> |
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[1650] | 156 | <field ref="wspd" name="sowindsp" /> |
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[1626] | 157 | <field ref="qrp" name="sohefldp" /> |
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| 158 | <field ref="erp" name="sowafldp" /> |
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[1681] | 159 | <field ref="mldr10_1" name="sobowlin" operation="t_max(X)" /> |
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[1626] | 160 | <field ref="mlddzt" name="sothedep" /> |
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| 161 | <field ref="20d" name="so20chgt" /> |
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| 162 | <field ref="28d" name="so28chgt" /> |
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| 163 | <field ref="hc300" name="sohtc300" /> |
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[1451] | 164 | </file> |
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| 165 | |
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[1637] | 166 | <file id="GYREL_1m_grid_U" description="ocean U grid variables" output_freq="2592000" output_level="5" > |
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[1626] | 167 | <field ref="uoce" name="vozocrtx" /> |
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| 168 | <field ref="uoce_eiv" name="vozoeivu" /> |
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| 169 | <field ref="utau" name="sozotaux" /> |
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[1451] | 170 | </file> |
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| 171 | |
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[1637] | 172 | <file id="GYREL_1m_grid_V" description="ocean V grid variables" output_freq="2592000" output_level="5" > |
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[1626] | 173 | <field ref="voce" name="vomecrty" /> |
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| 174 | <field ref="voce_eiv" name="vomeeivv" /> |
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| 175 | <field ref="vtau" name="sometauy" /> |
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[1451] | 176 | </file> |
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| 177 | |
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[1637] | 178 | <file id="GYREL_1m_grid_W" description="ocean W grid variables" output_freq="2592000" output_level="5" > |
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[1626] | 179 | <field ref="woce" name="vovecrtz" /> |
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| 180 | <field ref="woce_eiv" name="voveeivw" /> |
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| 181 | <field ref="avt" name="votkeavt" /> |
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| 182 | <field ref="avt_evd" name="votkeevd" /> |
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| 183 | <field ref="avm" name="votkeavm" /> |
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| 184 | <field ref="avm_evd" name="votkeevm" /> |
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| 185 | <field ref="avs" name="voddmavs" /> |
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| 186 | <field ref="aht2d" name="soleahtw" /> |
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| 187 | <field ref="aht2d_eiv" name="soleaeiw" /> |
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[1451] | 188 | </file> |
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| 189 | |
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[1637] | 190 | <file id="GYREL_1m_ptrc_T" description="lobster sms variables" output_freq="2592000" output_level="5" > |
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[1458] | 191 | <field ref="DET" /> |
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| 192 | <field ref="ZOO" /> |
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| 193 | <field ref="PHY" /> |
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| 194 | <field ref="NO3" /> |
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| 195 | <field ref="NH4" /> |
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| 196 | <field ref="DOM" /> |
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[1451] | 197 | </file> |
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| 198 | |
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[1637] | 199 | <file id="GYREL_1m_diad_T" description="additional lobster diagnostics" output_freq="2592000" output_level="5" > |
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[1458] | 200 | <field ref="FNO3PHY" /> |
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| 201 | <field ref="FNH4PHY" /> |
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| 202 | <field ref="FNH4NO3" /> |
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| 203 | <field ref="TNO3PHY" /> |
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| 204 | <field ref="TNH4PHY" /> |
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| 205 | <field ref="TPHYDOM" /> |
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| 206 | <field ref="TPHYNH4" /> |
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| 207 | <field ref="TPHYZOO" /> |
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| 208 | <field ref="TPHYDET" /> |
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| 209 | <field ref="TDETZOO" /> |
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| 210 | <field ref="TDETSED" /> |
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| 211 | <field ref="TZOODET" /> |
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| 212 | <field ref="TZOOBOD" /> |
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| 213 | <field ref="TZOONH4" /> |
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| 214 | <field ref="TZOODOM" /> |
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| 215 | <field ref="TNH4NO3" /> |
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| 216 | <field ref="TDOMNH4" /> |
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| 217 | <field ref="TDETNH4" /> |
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| 218 | <field ref="TPHYTOT" /> |
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| 219 | <field ref="TZOOTOT" /> |
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| 220 | <field ref="TDETDOM" /> |
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| 221 | <field ref="SEDPOC" /> |
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[1451] | 222 | </file> |
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| 223 | |
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| 224 | </file_definition> |
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| 225 | |
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| 226 | <axis_definition> |
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[1682] | 227 | <axis id="deptht" description="Vertical T levels" unit="m" positive=".false." /> |
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| 228 | <axis id="depthu" description="Vertical U levels" unit="m" positive=".false." /> |
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| 229 | <axis id="depthv" description="Vertical V levels" unit="m" positive=".false." /> |
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| 230 | <axis id="depthw" description="Vertical W levels" unit="m" positive=".false." /> |
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[1451] | 231 | <axis id="none" description="axe non defini" unit="none" size="1" /> |
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| 232 | </axis_definition> |
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| 233 | |
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| 234 | <grid_definition> |
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| 235 | <grid id="grid_T" description="grid T" /> |
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| 236 | <grid id="grid_U" description="grid U" /> |
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| 237 | <grid id="grid_V" description="grid V" /> |
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| 238 | <grid id="grid_W" description="grid W" /> |
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| 239 | </grid_definition> |
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| 240 | |
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| 241 | </context> |
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| 242 | |
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| 243 | </simulation> |
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