[1121] | 1 | !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> |
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| 2 | !! PISCES : 1 - air-sea exchange (nampisext) |
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| 3 | !! namelists 2 - biological parameters (nampisbio) |
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| 4 | !! 3 - parameters for nutrient limitations (nampislim) |
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| 5 | !! 4 - parameters for phytoplankton (nampisprod,nampismort) |
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| 6 | !! 5 - parameters for zooplankton (nampismes,nampiszoo) |
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| 7 | !! 6 - parameters for remineralization (nampisrem) |
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| 8 | !! 7 - parameters for calcite chemistry (nampiscal) |
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| 9 | !! 8 - parameters for inputs deposition (nampissed) |
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| 10 | !! 9 - parameters for Kriest parameterization (nampiskrp, nampiskrs) |
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| 11 | !! 10 - additional 2D/3D diagnostics (nampisdia) |
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[1086] | 12 | !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> |
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[1121] | 13 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 14 | &nampisext ! air-sea exchange |
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| 15 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 16 | atcco2 = 278. ! atmospheric pCO2 |
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[1086] | 17 | / |
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[1121] | 18 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 19 | &nampisbio ! biological parameters |
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| 20 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 21 | part = 0.85 ! part of calcite not dissolved in guts |
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| 22 | nrdttrc = 4 ! time step frequency for biology |
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| 23 | wsbio = 2. ! POC sinking speed |
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| 24 | xkmort = 1.E-7 ! half saturation constant for mortality |
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| 25 | ferat3 = 3.E-6 ! Fe/C in zooplankton |
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| 26 | wsbio2 = 50. ! Big particles sinking speed |
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[1086] | 27 | / |
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[1121] | 28 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 29 | &nampislim ! parameters for nutrient limitations |
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| 30 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 31 | conc0 = 2.e-6 ! Phosphate half saturation |
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| 32 | conc1 = 10E-6 ! Phosphate half saturation for diatoms |
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| 33 | conc2 = 0.02E-9 ! Iron half saturation for phyto |
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| 34 | conc2m = 0.08E-9 ! Max iron half saturation for phyto |
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| 35 | conc3 = 0.1E-9 ! Iron half saturation for diatoms |
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| 36 | conc3m = 0.4E-9 ! Maxi iron half saturation for diatoms |
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| 37 | concnnh4 = 1.E-7 ! NH4 half saturation for phyto |
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| 38 | concdnh4 = 5.E-7 ! NH4 half saturation for diatoms |
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| 39 | xksi1 = 2.E-6 ! half saturation constant for Si uptake |
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| 40 | xksi2 = 3.33E-6 ! half saturation constant for Si/C |
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| 41 | xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization |
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| 42 | caco3r = 0.3 ! mean rain ratio |
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[1086] | 43 | / |
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[1121] | 44 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 45 | &nampisprod ! parameters for phytoplankton growth |
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| 46 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 47 | pislope = 4. ! P-I slope |
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| 48 | pislope2 = 4. ! P-I slope for diatoms |
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| 49 | excret = 0.05 ! excretion ratio of phytoplankton |
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| 50 | excret2 = 0.05 ! excretion ratio of diatoms |
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| 51 | chlcnm = 0.033 ! Minimum Chl/C in nanophytoplankton |
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| 52 | chlcdm = 0.05 ! Minimum Chl/C in diatoms |
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| 53 | fecnm = 10E-6 ! Maximum Fe/C in nanophytoplankton |
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| 54 | fecdm = 15E-6 ! Minimum Fe/C in diatoms |
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| 55 | grosip = 0.151 ! mean Si/C ratio |
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[1086] | 56 | / |
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[1121] | 57 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 58 | &nampismort ! parameters for phytoplankton sinks |
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| 59 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 60 | wchl = 0.001 ! quadratic mortality of phytoplankton |
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| 61 | wchld = 0.02 ! maximum quadratic mortality of diatoms |
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| 62 | mprat = 0.01 ! phytoplankton mortality rate |
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| 63 | mprat2 = 0.01 ! Diatoms mortality rate |
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| 64 | mpratm = 0.01 ! Phytoplankton minimum mortality rate |
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[1086] | 65 | / |
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[1121] | 66 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 67 | &nampismes ! parameters for mesozooplankton |
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| 68 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 69 | grazrat2 = 0.7 ! maximal mesozoo grazing rate |
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| 70 | resrat2 = 0.005 ! exsudation rate of mesozooplankton |
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| 71 | mzrat2 = 0.03 ! mesozooplankton mortality rate |
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| 72 | xprefc = 1. ! zoo preference for phyto |
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| 73 | xprefp = 0.2 ! zoo preference for POC |
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| 74 | xprefz = 1. ! zoo preference for zoo |
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| 75 | xprefpoc = 0.2 ! zoo preference for poc |
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| 76 | xkgraz2 = 20.E-6 ! half sturation constant for meso grazing |
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| 77 | epsher2 = 0.33 ! Efficicency of Mesozoo growth |
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| 78 | sigma2 = 0.6 ! Fraction of mesozoo excretion as DOM |
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| 79 | unass2 = 0.3 ! non assimilated fraction of P by mesozoo |
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| 80 | grazflux = 5.e3 ! flux-feeding rate |
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[1086] | 81 | / |
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[1121] | 82 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 83 | &nampiszoo ! parameters for microzooplankton |
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| 84 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 85 | grazrat = 4.0 ! maximal zoo grazing rate |
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| 86 | resrat = 0.03 ! exsudation rate of zooplankton |
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| 87 | mzrat = 0.0 ! zooplankton mortality rate |
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| 88 | xpref2c = 0.0 ! Microzoo preference for POM |
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| 89 | xpref2p = 0.5 ! Microzoo preference for Nanophyto |
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| 90 | xpref2d = 0.5 ! Microzoo preference for Diatoms |
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| 91 | xkgraz = 20.E-6 ! half sturation constant for grazing |
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| 92 | epsher = 0.33 ! Efficiency of microzoo growth |
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| 93 | sigma1 = 0.6 ! Fraction of microzoo excretion as DOM |
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| 94 | unass = 0.3 ! non assimilated fraction of phyto by zoo |
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[1086] | 95 | / |
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[1121] | 96 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 97 | &nampisrem ! parameters for remineralization |
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| 98 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 99 | xremik = 0.3 ! remineralization rate of DOC |
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| 100 | xremip = 0.025 ! remineralisation rate of POC |
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| 101 | nitrif = 0.05 ! NH4 nitrification rate |
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| 102 | xsirem = 0.015 ! remineralization rate of Si |
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| 103 | xlam1 = 0.005 ! scavenging rate of Iron |
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| 104 | oxymin = 1.E-6 ! Half-saturation constant for anoxia |
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[1086] | 105 | / |
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[1121] | 106 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 107 | &nampiscal ! parameters for Calcite chemistry |
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| 108 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 109 | kdca = 0.327e3 ! calcite dissolution rate constant (1/time) |
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| 110 | nca = 1. ! order of dissolution reaction (dimensionless) |
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[1086] | 111 | / |
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[1121] | 112 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 113 | &nampissed ! parameters for inputs deposition |
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| 114 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 115 | bdustfer = .true. ! boolean for dust input from the atmosphere |
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| 116 | briver = .true. ! boolean for river input of nutrients |
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| 117 | bndepo = .true. ! boolean for atmospheric deposition of N |
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| 118 | bsedinput = .true. ! boolean for Fe input from sediments |
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| 119 | sedfeinput = 1E-9 ! Coastal release of Iron |
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| 120 | dustsolub = 0.014 ! Solubility of the dust |
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[1086] | 121 | / |
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[1121] | 122 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 123 | &nampiskrp ! Kriest parameterization : parameters "key_kriest" |
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| 124 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 125 | xkr_eta = 1.17 ! Sinking exponent |
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| 126 | xkr_zeta = 2.28 ! N content exponent |
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| 127 | xkr_mass_min = 0.0002 ! Minimum mass for Aggregates |
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| 128 | xkr_mass_max = 1. ! Maximum mass for Aggregates |
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[1086] | 129 | / |
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[1121] | 130 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 131 | &nampiskrs ! Kriest parameterization : size classes "key_kriest" |
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| 132 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 133 | xkr_sfact = 942. ! Sinking factor |
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| 134 | xkr_stick = 0.5 ! Stickiness |
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| 135 | xkr_nnano = 2.337 ! Nbr of cell in nano size class |
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| 136 | xkr_ndiat = 3.718 ! Nbr of cell in diatoms size class |
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| 137 | xkr_nmeso = 7.147 ! Nbr of cell in mesozoo size class |
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| 138 | xkr_naggr = 9.877 ! Nbr of cell in aggregates size class |
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| 139 | / |
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| 140 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 141 | &nampisdia ! additional 2D/3D tracers diagnostics ("key_trc_diaadd") |
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| 142 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 143 | nwritedia = 5475 ! time step frequency for tracers diagnostics |
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[1086] | 144 | ! |
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[1121] | 145 | ! ! name ! title of the field ! units ! |
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| 146 | ! ! ! ! ! |
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| 147 | pisdia2d(1) = 'Cflx ' , 'DIC flux ', 'molC/m2/s ' |
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| 148 | pisdia2d(2) = 'Oflx ' , 'Oxygen flux ', 'molC/m2/s ' |
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| 149 | pisdia2d(3) = 'Kg ' , 'Gas transfer ', 'mol/m2/s/uatm' |
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| 150 | pisdia2d(4) = 'Delc ' , 'Delta CO2 ', 'uatm ' |
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| 151 | pisdia2d(5) = 'PMO ' , 'POC export ', 'molC/m2/s ' |
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| 152 | pisdia2d(6) = 'PMO2 ' , 'GOC export ', 'molC/m2/s ' |
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| 153 | pisdia2d(7) = 'ExpFe1 ' , 'Nano iron export ', 'molFe/m2/s ' |
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| 154 | pisdia2d(8) = 'ExpFe2 ' , 'Diatoms iron export ', 'molFe/m2/s ' |
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| 155 | pisdia2d(9) = 'ExpSi ' , 'Silicate export ', 'molSi/m2/s ' |
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| 156 | pisdia2d(10) = 'ExpCaCO3 ' , 'Calcite export ', 'molC/m2/s ' |
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| 157 | pisdia2d(11) = 'heup ' , 'euphotic layer depth ', 'm ' |
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| 158 | pisdia2d(12) = 'Fedep ' , 'Iron dep ', 'molFe/m2/s ' |
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| 159 | pisdia2d(13) = 'Nfix ' , 'Nitrogen Fixation ', 'molN/m2/s ' |
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| 160 | pisdia3d(1) = 'PH ' , 'PH ', '- ' |
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| 161 | pisdia3d(2) = 'CO3 ' , 'Bicarbonates ', 'mol/l ' |
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| 162 | pisdia3d(3) = 'CO3sat ' , 'CO3 saturation ', 'mol/l ' |
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| 163 | pisdia3d(4) = 'PAR ' , 'light penetration ', 'W/m2 ' |
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| 164 | pisdia3d(5) = 'PPPHY ' , 'Primary production of nanophyto ', 'molC/m3/s ' |
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| 165 | pisdia3d(6) = 'PPPHY2 ' , 'Primary production of diatoms ', 'molC/m3/s ' |
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| 166 | pisdia3d(7) = 'PPZOO ' , 'Primary production of microzoo ', 'molC/m3/s ' |
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| 167 | pisdia3d(8) = 'PPZOO2 ' , 'Primary production of mesozoo ', 'molC/m3/s ' |
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| 168 | pisdia3d(9) = 'PBSi ' , 'Primary production of Si diatoms ', 'molSi/m3/s ' |
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| 169 | pisdia3d(10) = 'PFeN ' , 'Primary production of nano iron ', 'molFe/m3/s ' |
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| 170 | pisdia3d(11) = 'PFeD ' , 'Primary production of diatoms iron', 'molFe/m3/s ' |
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[1086] | 171 | / |
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