[186] | 1 | !!-------------------------------------------------------------------- |
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| 2 | !! |
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| 3 | !! COMMON passivetrc.lobster1.h |
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| 4 | !! ******************************* |
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| 5 | !! |
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| 6 | !! purpose : |
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| 7 | !! --------- |
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| 8 | !! INCLUDE COMMON FILE for LOBSTER1 biological model (IF key_trc_lobster1) |
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| 9 | !! |
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| 10 | !! modifications : |
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| 11 | !! ------------- |
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| 12 | !! original : 99-09 (M. Levy) |
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| 13 | !! additions : 00-12 (O. Aumont, E. Kestenare): |
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| 14 | !! add sediment parameters |
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| 15 | !! |
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| 16 | !!--------------------------------------------------------------------- |
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[341] | 17 | !! TOP 1.0 , LOCEAN-IPSL (2005) |
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| 18 | !! $Header$ |
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| 19 | !! This software is governed by the CeCILL licence see modipsl/doc/NEMO_CeCILL.txt |
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[186] | 20 | !!--------------------------------------------------------------------- |
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| 21 | !! |
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| 22 | !! |
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| 23 | !!---------------------------------------------------------------------- |
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| 24 | !! |
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[617] | 25 | !! biological parameters |
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[186] | 26 | !! -------------------------------------------- |
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| 27 | !! |
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| 28 | !! apmin : minimum phytoplancton concentration (NAMELIST) |
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| 29 | !! azmin : minimum zooplancton concentration (NAMELIST) |
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| 30 | !! anmin : minimum nutrients concentration (NAMELIST) |
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| 31 | !! admin : minimum detritus concentration (NAMELIST) |
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| 32 | !! redf : redfield ratio c:n (NAMELIST) |
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[336] | 33 | !! reddom : redfield ratio c:n for DOM |
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[186] | 34 | !! slopet : van t hoff coefficient (NAMELIST) |
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| 35 | !! toptp : optimal photosynthesis temperature (NAMELIST) |
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| 36 | !! aknut : half-saturation nutrient (NAMELIST) |
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[336] | 37 | !! akno3 : half-saturation for nitrate (NAMELIST) |
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| 38 | !! aknh4 : half-saturation for ammonium (NAMELIST) |
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| 39 | !! psinut : inhibition of nitrate uptake by ammonium (NAMELIST) |
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[186] | 40 | !! rgamma : phytoplankton exudation fraction (NAMELIST) |
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| 41 | !! toptgz : optimal temperature for zooplankton growth (NAMELIST) |
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| 42 | !! tmaxgz : maximal temperature for zooplankton growth (NAMELIST) |
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| 43 | !! rgz : widtht of zooplankton temperature FUNCTION (NAMELIST) |
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| 44 | !! rppz : zooplankton nominal preference for phytoplancton |
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| 45 | !! food, (NAMELIST) |
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| 46 | !! taus : maximum specific zooplankton grazing rate (NAMELIST) |
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| 47 | !! aks : half saturation constant for total zooplankton |
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| 48 | !! grazing (NAMELIST) |
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| 49 | !! filmax : maximum mass clearance rate for zooplankton (NAMELIST) |
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| 50 | !! rpnaz : non-assimilated phytoplankton by zooplancton (NAMELIST) |
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| 51 | !! rdnaz : non-assimilated detritus by zooplankton (NAMELIST) |
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| 52 | !! eggzoo : minimum for zooplankton concentration (NAMELIST) |
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| 53 | !! tauzn : zooplancton specific excretion rate (NAMELIST) |
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| 54 | !! tmmaxp : maximal phytoplancton mortality rate (NAMELIST) |
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| 55 | !! tmminp : minimal phytoplancton mortality rate (NAMELIST) |
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| 56 | !! tmmaxz : maximal zooplankton mortality rate (NAMELIST) |
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| 57 | !! tmminz : minimal zooplankton mortality rate (NAMELIST) |
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| 58 | !! anumin : nutrient threshold for phytoplankton mortality (NAMELIST) |
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| 59 | !! afdmin : food threshold for zooplankton mortality (NAMELIST) |
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| 60 | !! taudn : detrital breakdown rate (NAMELIST) |
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| 61 | !! vsed : sedimentation speed (NAMELIST) |
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| 62 | !! tmumax : maximal phytoplankton growth rate (NAMELIST) |
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| 63 | !! aki : light photosynthesis half saturation constant (NAMELIST) |
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| 64 | !! |
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| 65 | !! tmaxr : maximum coefficient for passive tracer damping (NAMELIST) |
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| 66 | !! tminr : minimum coefficient for passive tracer damping (NAMELIST) |
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| 67 | !! remdmp() : damping coefficient of passive tracers (depth dependant) |
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| 68 | !! fdoml : fraction of exsudation that goes to nh4 (should be labile dom) |
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| 69 | !! taunn : nitrification rate |
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| 70 | !! taudomn : slow remineralization rate of semi-labile dom to nh4 |
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| 71 | !! xhr : coeff for Martin's remineralistion profile |
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| 72 | !! |
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[336] | 73 | !! added by asklod AS Kremeur 2005-03: |
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| 74 | !! fphylab : NH4 fraction of phytoplankton excretion |
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| 75 | !! fzoolab : NH4 fraction of zooplankton excretion |
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| 76 | !! fdetlab : NH4 fraction of detritus dissolution |
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| 77 | !! fdbod : zooplankton mortality fraction that goes to detritus |
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[186] | 78 | |
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| 79 | REAL apmin,azmin,anmin,admin, & |
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[336] | 80 | redf,reddom,slopet,toptp,aknut,psinut,akno3,aknh4,rcchl, & |
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[186] | 81 | rgamma,toptgz,tmaxgz,rgz, & |
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| 82 | rppz,taus,aks,filmax,rpnaz,rdnaz,eggzoo,tauzn, & |
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| 83 | tmmaxp,tmminp,tmmaxz,tmminz,anumin,afdmin,taudn, & |
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| 84 | vsed,tmumax,aki, & |
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[336] | 85 | tmaxr,tminr,fdoml,taunn,taudomn,xhr, & |
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| 86 | fphylab,fzoolab,fdetlab,fdbod |
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[186] | 87 | REAL remdmp(jpk,jptra) |
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| 88 | |
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| 89 | !! |
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| 90 | !! |
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| 91 | # if defined key_trc_diabio |
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| 92 | !! |
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| 93 | !!---------------------------------------------------------------------- |
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| 94 | !! |
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[617] | 95 | !! biological trends |
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[186] | 96 | !! ------------------------------------------------------------------ |
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| 97 | !! |
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| 98 | !! ctrbio : biological trends name (NAMELIST) |
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| 99 | !! ctrbil : biological trends long name (NAMELIST) |
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| 100 | !! ctrbiu : biological trends unit (NAMELIST) |
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| 101 | !! trbio() : biological trends |
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| 102 | !! |
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| 103 | CHARACTER*8 ctrbio(jpdiabio) |
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| 104 | CHARACTER*20 ctrbiu(jpdiabio) |
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| 105 | CHARACTER*80 ctrbil(jpdiabio) |
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| 106 | REAL trbio(jpi,jpj,jpk,jpdiabio) |
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| 107 | |
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| 108 | !! |
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| 109 | !! netcdf files and index COMMON biological trends files |
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| 110 | !! |
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| 111 | !! nwritebio: time step frequency for biological outputs (NAMELIST) |
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[336] | 112 | ! asklod 10-2005: oubli de cette partie dans l update: |
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| 113 | !! nitb : id for additional array output FILE |
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| 114 | !! ndepitb : id for depth mesh |
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| 115 | !! nhoritb : id for horizontal mesh |
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[186] | 116 | !! |
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[336] | 117 | INTEGER nwritebio,nitb,ndepitb,nhoritb |
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[186] | 118 | |
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| 119 | # endif |
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[617] | 120 | |
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[186] | 121 | !!---------------------------------------------------------------------- |
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| 122 | !! |
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[617] | 123 | !! optical parameters |
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[186] | 124 | !! ----------------------------------- |
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| 125 | !! |
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| 126 | !! xze : euphotic layer depth |
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| 127 | !! xpar : par (photosynthetic available radiation) |
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| 128 | !! xkr0 : water coefficient absorption in red (NAMELIST) |
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| 129 | !! xkg0 : water coefficient absorption in green (NAMELIST) |
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| 130 | !! xkrp : pigment coefficient absorption in red (NAMELIST) |
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| 131 | !! xkgp : pigment coefficient absorption in green (NAMELIST) |
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| 132 | !! xlr : exposant for pigment absorption in red (NAMELIST) |
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| 133 | !! xlg : exposant for pigment absorption in green (NAMELIST) |
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| 134 | !! rpig : chla/chla+phea ratio (NAMELIST) |
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| 135 | !! |
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| 136 | REAL xkr0,xkg0,xkrp,xkgp,xlr,xlg,rpig |
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| 137 | |
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| 138 | REAL xze(jpi,jpj) |
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| 139 | REAL xpar(jpi,jpj,jpk) |
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[617] | 140 | |
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[186] | 141 | !!---------------------------------------------------------------------- |
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| 142 | !! |
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[617] | 143 | !! sediment parameters |
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[186] | 144 | !! -------------------------------------- |
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| 145 | !! |
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| 146 | !! sedlam : time coefficient of POC remineralization in sediments |
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| 147 | !! dmin3 : fraction of sinking POC released at each level |
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| 148 | !! dminl : fraction of sinking POC released in sediments |
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[336] | 149 | !! asklod add sedpocb, sedpocn, sedpoca 17 06 2005 |
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| 150 | !! sedpocb : mass of POC in sediments |
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| 151 | !! sedpocn : mass of POC in sediments |
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| 152 | !! sedpoca : mass of POC in sediments |
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[186] | 153 | !! fbod : rapid sinking particles |
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| 154 | !! |
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| 155 | !! |
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| 156 | REAL sedlam,sedlostpoc |
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[336] | 157 | REAL dmin3(jpi,jpj,jpk), dminl(jpi,jpj) |
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| 158 | REAL sedpoca(jpi,jpj),sedpocb(jpi,jpj),sedpocn(jpi,jpj) |
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[186] | 159 | REAL fbod(jpi,jpj),cmask(jpi,jpj),areacot |
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| 160 | |
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