source: trunk/NEMO/TOP_SRC/SMS/trcini.lobster1.h90 @ 280

!!---------------------------------------------------------------------
!!
!!                        trcini.lobster1.h
!!  purpose :
!!  ---------
!!     specific initialisation for lobster1 model
!!
!!   History :
!!   --------
!!      original    : 99-09 (M. Levy) 
!!      additions   : 00-12 (0. Aumont, E. Kestenare)
!!                           add sediment computations
!!    03-05 : O. Aumont and A. El Moussaoui F90  
!!---------------------------------------------------------------------
!!  TOP 1.0,  LOCEAN-IPSL (2005)
!! $Header$
!! This software is governed by the CeCILL licence see modipsl/doc/NEMO_CeCILL.txt
!!---------------------------------------------------------------------
!! local declarations
!! ==================
      INTEGER ji,jj,jk
      REAL zdm0(jpi,jpj,jpk),zrro(jpi,jpj),zfluo,zfluu
      REAL ztest

!! 1. initialization of fields for optical model
!! --------------------------------------------

          xze(:,:)=5.
          xpar(:,:,:)=0.

!! 2. initialization for passive tracer remineralisation-damping  array
!! -------------------------------------------------------------------------
 
      DO jn=1,jptra
          remdmp(:,jn)=tminr
      END DO

      IF(lwp) THEN
          WRITE(numout,*) ' '
          WRITE(numout,*) ' trcini: compute remineralisation-damping  '
          WRITE(numout,*) '         arrays for tracers'
      ENDIF

!! 3. initialization of biological variables
!! ------------------------------------------

!! Calculate vertical distribution of newly formed biogenic poc
!! in the water column in the case of max. possible bottom depth
!! ------------------------------------------------------------

      zdm0   = 0.
      zrro = 1.
      DO jk = jpkb,jpkm1
            zfluo = (fsdepw(:,:,jk)/fsdepw(:,:,jpkb))**xhr 
            zfluu = (fsdepw(:,:,jk+1)/fsdepw(:,:,jpkb))**xhr
            IF (zfluo.gt.1.) zfluo = 1.
            zdm0(:,:,jk) = zfluo-zfluu
            IF (jk.le.jpkb-1) zdm0(:,:,jk)=0.
            zrro(:,:) = zrro(:,:)-zdm0(:,:,jk)
      ENDDO
!!!

          zdm0(:,:,jpk) = zrro(:,:)

!! Calculate vertical distribution of newly formed biogenic poc
!! in the water column with realistic topography (first "dry" layer
!! contains total fraction, which has passed to the upper layers)
!! ----------------------------------------------------------------------

      dminl = 0.
      dmin3 = zdm0

      DO jk = 1,jpk
         DO jj = 1,jpj
           DO ji = 1,jpi

            IF(tmask(ji,jj,jk) == 0) THEN
                dminl(ji,jj) = dminl(ji,jj)+dmin3(ji,jj,jk)
                dmin3(ji,jj,jk) = 0.0
            ENDIF

          ENDDO
        ENDDO
      ENDDO

      DO jj = 1,jpj
        DO ji = 1,jpi
          IF (tmask(ji,jj,1) == 0) dmin3(ji,jj,1) = 0.
        ENDDO
      ENDDO

!! CALCUL DU MASK DE COTE
!! ----------------------   
        cmask=0.
        do ji=2,jpi-1
          do jj=2,jpj-1
            if (tmask(ji,jj,1) == 1) then
             ztest=tmask(ji+1,jj,1)*tmask(ji-1,jj,1)*tmask(ji,jj+1,1)
     .             *tmask(ji,jj-1,1)
             if (ztest == 0) cmask(ji,jj)=1.
             endif
          end do
        end do

        cmask(1,:)=cmask(jpi-1,:)
        cmask(jpi,:)=cmask(2,:)


!! CALCUL DE LA SURFACE COTIERE
!! ----------------------------
         areacot=0.
         do ji=2,jpi-1
            do jj=2,jpj-1
               areacot=areacot+e1t(ji,jj)*e2t(ji,jj)*cmask(ji,jj)
            end do
         end do