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iom.F90 in trunk/NEMOGCM/NEMO/OPA_SRC/IOM – NEMO

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source: trunk/NEMOGCM/NEMO/OPA_SRC/IOM/iom.F90 @ 3971

Last change on this file since 3971 was 3971, checked in by cbricaud, 11 years ago
Correction for 1D configuration ; see ticket #1096
Property svn:keywords set to `Id`
File size: 74.2 KB

Rev	Line
[544]	1	MODULE iom
	2	!!=====================================================================
	3	!! * MODULE iom *
	4	!! Input/Output manager : Library to read input files
	5	!!====================================================================
[3764]	6	!! History : 2.0 ! 2005-12 (J. Belier) Original code
	7	!! 2.0 ! 2006-02 (S. Masson) Adaptation to NEMO
	8	!! 3.0 ! 2007-07 (D. Storkey) Changes to iom_gettime
	9	!! 3.4 ! 2012-12 (R. Bourdalle-Badie and G. Reffray) add C1D case
[544]	10	!!--------------------------------------------------------------------
	11
	12	!!--------------------------------------------------------------------
	13	!! iom_open : open a file read only
	14	!! iom_close : close a file or all files opened by iom
	15	!! iom_get : read a field (interfaced to several routines)
[550]	16	!! iom_gettime : read the time axis cdvar in the file
[544]	17	!! iom_varid : get the id of a variable in a file
	18	!! iom_rstput : write a field in a restart file (interfaced to several routines)
	19	!!--------------------------------------------------------------------
	20	USE dom_oce ! ocean space and time domain
[3764]	21	USE c1d ! 1D vertical configuration
[3294]	22	USE flo_oce ! floats module declarations
[679]	23	USE lbclnk ! lateal boundary condition / mpp exchanges
[544]	24	USE iom_def ! iom variables definitions
	25	USE iom_ioipsl ! NetCDF format with IOIPSL library
	26	USE iom_nf90 ! NetCDF format with native NetCDF library
	27	USE iom_rstdimg ! restarts access direct format "dimg" style...
[2715]	28	USE in_out_manager ! I/O manager
	29	USE lib_mpp ! MPP library
[1412]	30	#if defined key_iomput
[1725]	31	USE sbc_oce, ONLY : nn_fsbc ! ocean space and time domain
[3770]	32	USE trc_oce, ONLY : nn_dttrc ! !: frequency of step on passive tracers
[1725]	33	USE domngb ! ocean space and time domain
	34	USE phycst ! physical constants
	35	USE dianam ! build name of file
[3695]	36	USE xios
[1359]	37	# endif
[3940]	38	USE ioipsl, ONLY : ju2ymds ! for calendar
[1359]	39
[544]	40	IMPLICIT NONE
[556]	41	PUBLIC ! must be public to be able to access iom_def through iom
[550]	42
[1457]	43	#if defined key_iomput
[1725]	44	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .TRUE. !: iom_put flag
[1457]	45	#else
	46	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .FALSE. !: iom_put flag
	47	#endif
[1793]	48	PUBLIC iom_init, iom_swap, iom_open, iom_close, iom_setkt, iom_varid, iom_get, iom_gettime, iom_rstput, iom_put
[2528]	49	PUBLIC iom_getatt
[544]	50
[752]	51	PRIVATE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
	52	PRIVATE iom_g0d, iom_g1d, iom_g2d, iom_g3d, iom_get_123d
[3294]	53	PRIVATE iom_p1d, iom_p2d, iom_p3d
[1412]	54	#if defined key_iomput
[3940]	55	PRIVATE iom_set_domain_attr, iom_set_axis_attr, iom_set_field_attr, iom_set_file_attr, iom_get_file_attr, iom_set_grid_attr
	56	PRIVATE set_grid, set_scalar, set_xmlatt, set_mooring, iom_update_file_name, iom_sdate
[1359]	57	# endif
[752]	58
[544]	59	INTERFACE iom_get
[550]	60	MODULE PROCEDURE iom_g0d, iom_g1d, iom_g2d, iom_g3d
[544]	61	END INTERFACE
[2528]	62	INTERFACE iom_getatt
	63	MODULE PROCEDURE iom_g0d_intatt
	64	END INTERFACE
[544]	65	INTERFACE iom_rstput
[550]	66	MODULE PROCEDURE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
[544]	67	END INTERFACE
[1359]	68	INTERFACE iom_put
[3294]	69	MODULE PROCEDURE iom_p0d, iom_p1d, iom_p2d, iom_p3d
[1359]	70	END INTERFACE
[1412]	71	#if defined key_iomput
[1359]	72	INTERFACE iom_setkt
[3695]	73	MODULE PROCEDURE xios_update_calendar
[1359]	74	END INTERFACE
	75	# endif
[544]	76
	77	!!----------------------------------------------------------------------
[2528]	78	!! NEMO/OPA 3.3 , NEMO Consortium (2010)
[1152]	79	!! $Id$
[2528]	80	!! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
[544]	81	!!----------------------------------------------------------------------
	82
	83	CONTAINS
	84
[1725]	85	SUBROUTINE iom_init
[1359]	86	!!----------------------------------------------------------------------
	87	!! * ROUTINE *
	88	!!
	89	!! ** Purpose :
	90	!!
	91	!!----------------------------------------------------------------------
[1412]	92	#if defined key_iomput
[3695]	93	TYPE(xios_time) :: dtime = xios_time(0, 0, 0, 0, 0, 0)
	94	CHARACTER(len=19) :: cldate
[3732]	95	CHARACTER(len=10) :: clname
[3695]	96	INTEGER :: ji
[1359]	97	!!----------------------------------------------------------------------
[3695]	98
[3732]	99	clname = "nemo"
	100	IF( TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(clname)
[3971]	101	#if defined key_mpp_mpi
[3732]	102	CALL xios_context_initialize(TRIM(clname), mpi_comm_opa)
[3971]	103	#else
	104	CALL xios_context_initialize(TRIM(clname), 0)
	105	#endif
[1793]	106	CALL iom_swap
[1359]	107
	108	! calendar parameters
[1725]	109	SELECT CASE ( nleapy ) ! Choose calendar for IOIPSL
[3732]	110	CASE ( 1) ; CALL xios_set_context_attr(TRIM(clname), calendar_type= "Gregorian")
	111	CASE ( 0) ; CALL xios_set_context_attr(TRIM(clname), calendar_type= "NoLeap")
	112	CASE (30) ; CALL xios_set_context_attr(TRIM(clname), calendar_type= "D360")
[1725]	113	END SELECT
[3695]	114	WRITE(cldate,"(i4.4,'-',i2.2,'-',i2.2,' 00:00:00')") nyear,nmonth,nday
[3732]	115	CALL xios_set_context_attr(TRIM(clname), start_date=cldate )
[1359]	116
	117	! horizontal grid definition
[1738]	118	CALL set_scalar
[3771]	119	CALL set_grid( "T", glamt, gphit )
	120	CALL set_grid( "U", glamu, gphiu )
	121	CALL set_grid( "V", glamv, gphiv )
	122	CALL set_grid( "W", glamt, gphit )
[1359]	123
	124	! vertical grid definition
[3737]	125	CALL iom_set_axis_attr( "deptht", gdept_0 )
	126	CALL iom_set_axis_attr( "depthu", gdept_0 )
	127	CALL iom_set_axis_attr( "depthv", gdept_0 )
	128	CALL iom_set_axis_attr( "depthw", gdepw_0 )
[3294]	129	# if defined key_floats
[3737]	130	CALL iom_set_axis_attr( "nfloat", (ji, ji=1,nfloat) )
[3294]	131	# endif
[1725]	132
	133	! automatic definitions of some of the xml attributs
	134	CALL set_xmlatt
[1359]	135
	136	! end file definition
[3940]	137	dtime%second = rdt
	138	CALL xios_set_timestep(dtime)
	139	CALL xios_close_context_definition()
	140
	141	CALL xios_update_calendar(0)
[1359]	142	#endif
[3940]	143
[1359]	144	END SUBROUTINE iom_init
	145
	146
[1793]	147	SUBROUTINE iom_swap
	148	!!---------------------------------------------------------------------
	149	!! * SUBROUTINE iom_swap *
	150	!!
	151	!! ** Purpose : swap context between different agrif grid for xmlio_server
	152	!!---------------------------------------------------------------------
	153	#if defined key_iomput
[3695]	154	TYPE(xios_context) :: nemo_hdl
[1793]	155
	156	IF( TRIM(Agrif_CFixed()) == '0' ) THEN
[3695]	157	CALL xios_get_handle("nemo",nemo_hdl)
[1793]	158	ELSE
[3695]	159	CALL xios_get_handle(TRIM(Agrif_CFixed())//"_nemo",nemo_hdl)
[1793]	160	ENDIF
[3695]	161	CALL xios_set_current_context(nemo_hdl)
[1793]	162
	163	#endif
	164	END SUBROUTINE iom_swap
	165
	166
[1319]	167	SUBROUTINE iom_open( cdname, kiomid, ldwrt, kdom, kiolib, ldstop, ldiof )
[544]	168	!!---------------------------------------------------------------------
	169	!! * SUBROUTINE iom_open *
	170	!!
	171	!! ** Purpose : open an input file (return 0 if not found)
	172	!!---------------------------------------------------------------------
	173	CHARACTER(len=*), INTENT(in ) :: cdname ! File name
	174	INTEGER , INTENT( out) :: kiomid ! iom identifier of the opened file
	175	LOGICAL , INTENT(in ), OPTIONAL :: ldwrt ! open in write modeb (default = .FALSE.)
	176	INTEGER , INTENT(in ), OPTIONAL :: kdom ! Type of domain to be written (default = jpdom_local_noovlap)
[547]	177	INTEGER , INTENT(in ), OPTIONAL :: kiolib ! library used to open the file (default = jpnf90)
[679]	178	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if open to read a non-existing file (default = .TRUE.)
[1319]	179	LOGICAL , INTENT(in ), OPTIONAL :: ldiof ! Interp On the Fly, needed for AGRIF (default = .FALSE.)
[544]	180
[3940]	181	CHARACTER(LEN=256) :: clname ! the name of the file based on cdname [[+clcpu]+clcpu]
	182	CHARACTER(LEN=256) :: cltmpn ! tempory name to store clname (in writting mode)
[544]	183	CHARACTER(LEN=10) :: clsuffix ! ".nc" or ".dimg"
[550]	184	CHARACTER(LEN=15) :: clcpu ! the cpu number (max jpmax_digits digits)
[3940]	185	CHARACTER(LEN=256) :: clinfo ! info character
[544]	186	LOGICAL :: llok ! check the existence
[679]	187	LOGICAL :: llwrt ! local definition of ldwrt
[1200]	188	LOGICAL :: llnoov ! local definition to read overlap
[679]	189	LOGICAL :: llstop ! local definition of ldstop
[1319]	190	LOGICAL :: lliof ! local definition of ldiof
[544]	191	INTEGER :: iolib ! library do we use to open the file
	192	INTEGER :: icnt ! counter for digits in clcpu (max = jpmax_digits)
	193	INTEGER :: iln, ils ! lengths of character
	194	INTEGER :: idom ! type of domain
	195	INTEGER :: istop !
	196	INTEGER, DIMENSION(2,5) :: idompar ! domain parameters:
	197	! local number of points for x,y dimensions
	198	! position of first local point for x,y dimensions
	199	! position of last local point for x,y dimensions
	200	! start halo size for x,y dimensions
	201	! end halo size for x,y dimensions
	202	!---------------------------------------------------------------------
	203	! Initializations and control
	204	! =============
[1341]	205	kiomid = -1
[544]	206	clinfo = ' iom_open ~~~ '
	207	istop = nstop
	208	! if iom_open is called for the first time: initialize iom_file(:)%nfid to 0
	209	! (could be done when defining iom_file in f95 but not in f90)
[1441]	210	IF( Agrif_Root() ) THEN
	211	IF( iom_open_init == 0 ) THEN
	212	iom_file(:)%nfid = 0
	213	iom_open_init = 1
	214	ENDIF
[1409]	215	ENDIF
[544]	216	! do we read or write the file?
	217	IF( PRESENT(ldwrt) ) THEN ; llwrt = ldwrt
	218	ELSE ; llwrt = .FALSE.
	219	ENDIF
[679]	220	! do we call ctl_stop if we try to open a non-existing file in read mode?
	221	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	222	ELSE ; llstop = .TRUE.
	223	ENDIF
[544]	224	! what library do we use to open the file?
	225	IF( PRESENT(kiolib) ) THEN ; iolib = kiolib
[547]	226	ELSE ; iolib = jpnf90
[544]	227	ENDIF
[1319]	228	! are we using interpolation on the fly?
	229	IF( PRESENT(ldiof) ) THEN ; lliof = ldiof
	230	ELSE ; lliof = .FALSE.
	231	ENDIF
[1200]	232	! do we read the overlap
	233	! ugly patch SM+JMM+RB to overwrite global definition in some cases
[1202]	234	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
[544]	235	! create the file name by added, if needed, TRIM(Agrif_CFixed()) and TRIM(clsuffix)
	236	! =============
	237	clname = trim(cdname)
[1319]	238	IF ( .NOT. Agrif_Root() .AND. .NOT. lliof ) THEN
[1200]	239	iln = INDEX(clname,'/')
	240	cltmpn = clname(1:iln)
	241	clname = clname(iln+1:LEN_TRIM(clname))
	242	clname=TRIM(cltmpn)//TRIM(Agrif_CFixed())//'_'//TRIM(clname)
	243	ENDIF
[544]	244	! which suffix should we use?
	245	SELECT CASE (iolib)
	246	CASE (jpioipsl ) ; clsuffix = '.nc'
	247	CASE (jpnf90 ) ; clsuffix = '.nc'
	248	CASE (jprstdimg) ; clsuffix = '.dimg'
	249	CASE DEFAULT ; clsuffix = ''
	250	CALL ctl_stop( TRIM(clinfo), 'accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	251	END SELECT
	252	! Add the suffix if needed
	253	iln = LEN_TRIM(clname)
	254	ils = LEN_TRIM(clsuffix)
[742]	255	IF( iln <= ils .OR. INDEX( TRIM(clname), TRIM(clsuffix), back = .TRUE. ) /= iln - ils + 1 ) &
	256	& clname = TRIM(clname)//TRIM(clsuffix)
[544]	257	cltmpn = clname ! store this name
	258	! try to find if the file to be opened already exist
	259	! =============
	260	INQUIRE( FILE = clname, EXIST = llok )
	261	IF( .NOT.llok ) THEN
	262	! we try to add the cpu number to the name
[679]	263	IF( iolib == jprstdimg ) THEN ; WRITE(clcpu,*) narea
	264	ELSE ; WRITE(clcpu,*) narea-1
	265	ENDIF
[544]	266	clcpu = TRIM(ADJUSTL(clcpu))
[679]	267	iln = INDEX(clname,TRIM(clsuffix), back = .TRUE.)
[544]	268	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	269	icnt = 0
	270	INQUIRE( FILE = clname, EXIST = llok )
	271	! we try different formats for the cpu number by adding 0
	272	DO WHILE( .NOT.llok .AND. icnt < jpmax_digits )
	273	clcpu = "0"//trim(clcpu)
	274	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	275	INQUIRE( FILE = clname, EXIST = llok )
	276	icnt = icnt + 1
	277	END DO
	278	ENDIF
[679]	279	IF( llwrt ) THEN
	280	! check the domain definition
	281	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	282	! idom = jpdom_local_noovlap ! default definition
[1200]	283	IF( llnoov ) THEN ; idom = jpdom_local_noovlap ! default definition
	284	ELSE ; idom = jpdom_local_full ! default definition
[679]	285	ENDIF
	286	IF( PRESENT(kdom) ) idom = kdom
	287	! create the domain informations
	288	! =============
	289	SELECT CASE (idom)
	290	CASE (jpdom_local_full)
	291	idompar(:,1) = (/ jpi , jpj /)
	292	idompar(:,2) = (/ nimpp , njmpp /)
	293	idompar(:,3) = (/ nimpp + jpi - 1 , njmpp + jpj - 1 /)
	294	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	295	idompar(:,5) = (/ jpi - nlei , jpj - nlej /)
	296	CASE (jpdom_local_noextra)
	297	idompar(:,1) = (/ nlci , nlcj /)
	298	idompar(:,2) = (/ nimpp , njmpp /)
	299	idompar(:,3) = (/ nimpp + nlci - 1, njmpp + nlcj - 1 /)
	300	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	301	idompar(:,5) = (/ nlci - nlei , nlcj - nlej /)
	302	CASE (jpdom_local_noovlap)
	303	idompar(:,1) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	304	idompar(:,2) = (/ nimpp + nldi - 1, njmpp + nldj - 1 /)
	305	idompar(:,3) = (/ nimpp + nlei - 1, njmpp + nlej - 1 /)
	306	idompar(:,4) = (/ 0 , 0 /)
	307	idompar(:,5) = (/ 0 , 0 /)
	308	CASE DEFAULT
	309	CALL ctl_stop( TRIM(clinfo), 'wrong value of kdom, only jpdom_local* cases are accepted' )
	310	END SELECT
	311	ENDIF
[544]	312	! Open the NetCDF or RSTDIMG file
	313	! =============
	314	! do we have some free file identifier?
	315	IF( MINVAL(iom_file(:)%nfid) /= 0 ) &
[679]	316	& CALL ctl_stop( TRIM(clinfo), 'No more free file identifier', 'increase jpmax_files in iom_def' )
	317	! if no file was found...
	318	IF( .NOT. llok ) THEN
	319	IF( .NOT. llwrt ) THEN ! we are in read mode
	320	IF( llstop ) THEN ; CALL ctl_stop( TRIM(clinfo), 'File '//TRIM(cltmpn)//'* not found' )
	321	ELSE ; istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
	322	ENDIF
	323	ELSE ! we are in write mode so we
	324	clname = cltmpn ! get back the file name without the cpu number
	325	ENDIF
[2586]	326	ELSE
	327	IF( llwrt .AND. .NOT. ln_clobber ) THEN ! we stop as we want to write in a new file
	328	CALL ctl_stop( TRIM(clinfo), 'We want to write in a new file but '//TRIM(clname)//' already exists...' )
	329	istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
	330	ENDIF
[679]	331	ENDIF
[544]	332	IF( istop == nstop ) THEN ! no error within this routine
	333	SELECT CASE (iolib)
	334	CASE (jpioipsl ) ; CALL iom_ioipsl_open( clname, kiomid, llwrt, llok, idompar )
	335	CASE (jpnf90 ) ; CALL iom_nf90_open( clname, kiomid, llwrt, llok, idompar )
	336	CASE (jprstdimg) ; CALL iom_rstdimg_open( clname, kiomid, llwrt, llok, idompar )
	337	CASE DEFAULT
	338	CALL ctl_stop( TRIM(clinfo)//' accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	339	END SELECT
	340	ENDIF
	341	!
	342	END SUBROUTINE iom_open
	343
	344
	345	SUBROUTINE iom_close( kiomid )
	346	!!--------------------------------------------------------------------
	347	!! * SUBROUTINE iom_close *
	348	!!
	349	!! ** Purpose : close an input file, or all files opened by iom
	350	!!--------------------------------------------------------------------
[1131]	351	INTEGER, INTENT(inout), OPTIONAL :: kiomid ! iom identifier of the file to be closed
	352	! ! return 0 when file is properly closed
	353	! ! No argument: all files opened by iom are closed
[544]	354
	355	INTEGER :: jf ! dummy loop indices
	356	INTEGER :: i_s, i_e ! temporary integer
	357	CHARACTER(LEN=100) :: clinfo ! info character
	358	!---------------------------------------------------------------------
	359	!
	360	clinfo = ' iom_close ~~~ '
	361	IF( PRESENT(kiomid) ) THEN
	362	i_s = kiomid
	363	i_e = kiomid
	364	ELSE
	365	i_s = 1
	366	i_e = jpmax_files
	367	ENDIF
	368
	369	IF( i_s > 0 ) THEN
	370	DO jf = i_s, i_e
	371	IF( iom_file(jf)%nfid > 0 ) THEN
	372	SELECT CASE (iom_file(jf)%iolib)
	373	CASE (jpioipsl ) ; CALL iom_ioipsl_close( jf )
	374	CASE (jpnf90 ) ; CALL iom_nf90_close( jf )
	375	CASE (jprstdimg) ; CALL iom_rstdimg_close( jf )
	376	CASE DEFAULT
	377	CALL ctl_stop( TRIM(clinfo)//' accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	378	END SELECT
[1131]	379	iom_file(jf)%nfid = 0 ! free the id
	380	IF( PRESENT(kiomid) ) kiomid = 0 ! return 0 as id to specify that the file was closed
[679]	381	IF(lwp) WRITE(numout,*) TRIM(clinfo)//' close file: '//TRIM(iom_file(jf)%name)//' ok'
[544]	382	ELSEIF( PRESENT(kiomid) ) THEN
	383	WRITE(ctmp1,*) '--->', kiomid
	384	CALL ctl_stop( TRIM(clinfo)//' Invalid file identifier', ctmp1 )
	385	ENDIF
	386	END DO
	387	ENDIF
	388	!
	389	END SUBROUTINE iom_close
	390
	391
[745]	392	FUNCTION iom_varid ( kiomid, cdvar, kdimsz, ldstop )
[544]	393	!!-----------------------------------------------------------------------
	394	!! * FUNCTION iom_varid *
	395	!!
	396	!! ** Purpose : get the id of a variable in a file (return 0 if not found)
	397	!!-----------------------------------------------------------------------
	398	INTEGER , INTENT(in ) :: kiomid ! file Identifier
	399	CHARACTER(len=*) , INTENT(in ) :: cdvar ! name of the variable
	400	INTEGER, DIMENSION(:), INTENT( out), OPTIONAL :: kdimsz ! size of the dimensions
[745]	401	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if looking for non-existing variable (default = .TRUE.)
[544]	402	!
	403	INTEGER :: iom_varid, iiv, i_nvd
	404	LOGICAL :: ll_fnd
	405	CHARACTER(LEN=100) :: clinfo ! info character
[745]	406	LOGICAL :: llstop ! local definition of ldstop
[544]	407	!!-----------------------------------------------------------------------
	408	iom_varid = 0 ! default definition
[745]	409	! do we call ctl_stop if we look for non-existing variable?
	410	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	411	ELSE ; llstop = .TRUE.
	412	ENDIF
[544]	413	!
	414	IF( kiomid > 0 ) THEN
[679]	415	clinfo = 'iom_varid, file: '//trim(iom_file(kiomid)%name)//', var: '//trim(cdvar)
[544]	416	IF( iom_file(kiomid)%nfid == 0 ) THEN
	417	CALL ctl_stop( trim(clinfo), 'the file is not open' )
	418	ELSE
	419	ll_fnd = .FALSE.
	420	iiv = 0
	421	!
	422	DO WHILE ( .NOT.ll_fnd .AND. iiv < iom_file(kiomid)%nvars )
	423	iiv = iiv + 1
	424	ll_fnd = ( TRIM(cdvar) == TRIM(iom_file(kiomid)%cn_var(iiv)) )
	425	END DO
	426	!
	427	IF( .NOT.ll_fnd ) THEN
	428	iiv = iiv + 1
	429	IF( iiv <= jpmax_vars ) THEN
	430	SELECT CASE (iom_file(kiomid)%iolib)
	431	CASE (jpioipsl ) ; iom_varid = iom_ioipsl_varid( kiomid, cdvar, iiv, kdimsz )
[745]	432	CASE (jpnf90 ) ; iom_varid = iom_nf90_varid ( kiomid, cdvar, iiv, kdimsz )
	433	CASE (jprstdimg) ; iom_varid = -1 ! all variables are listed in iom_file
[544]	434	CASE DEFAULT
	435	CALL ctl_stop( TRIM(clinfo)//' accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	436	END SELECT
	437	ELSE
	438	CALL ctl_stop( trim(clinfo), 'Too many variables in the file '//iom_file(kiomid)%name, &
	439	& 'increase the parameter jpmax_vars')
	440	ENDIF
[745]	441	IF( llstop .AND. iom_varid == -1 ) CALL ctl_stop( TRIM(clinfo)//' not found' )
[544]	442	ELSE
	443	iom_varid = iiv
	444	IF( PRESENT(kdimsz) ) THEN
	445	i_nvd = iom_file(kiomid)%ndims(iiv)
	446	IF( i_nvd == size(kdimsz) ) THEN
	447	kdimsz(:) = iom_file(kiomid)%dimsz(1:i_nvd,iiv)
	448	ELSE
	449	WRITE(ctmp1,*) i_nvd, size(kdimsz)
	450	CALL ctl_stop( trim(clinfo), 'error in kdimsz size'//trim(ctmp1) )
	451	ENDIF
	452	ENDIF
	453	ENDIF
	454	ENDIF
	455	ENDIF
	456	!
	457	END FUNCTION iom_varid
	458
	459
	460	!!----------------------------------------------------------------------
	461	!! INTERFACE iom_get
	462	!!----------------------------------------------------------------------
[550]	463	SUBROUTINE iom_g0d( kiomid, cdvar, pvar )
[544]	464	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	465	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	466	REAL(wp) , INTENT( out) :: pvar ! read field
	467	!
	468	INTEGER :: idvar ! variable id
	469	!
[679]	470	IF( kiomid > 0 ) THEN
	471	idvar = iom_varid( kiomid, cdvar )
	472	IF( iom_file(kiomid)%nfid > 0 .AND. idvar > 0 ) THEN
	473	SELECT CASE (iom_file(kiomid)%iolib)
	474	CASE (jpioipsl ) ; CALL iom_ioipsl_get( kiomid, idvar, pvar )
	475	CASE (jpnf90 ) ; CALL iom_nf90_get( kiomid, idvar, pvar )
	476	CASE (jprstdimg) ; CALL iom_rstdimg_get( kiomid, idvar, pvar )
	477	CASE DEFAULT
	478	CALL ctl_stop( 'iom_g0d: accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	479	END SELECT
	480	ENDIF
	481	ENDIF
[550]	482	END SUBROUTINE iom_g0d
[544]	483
[550]	484	SUBROUTINE iom_g1d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount )
[544]	485	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	486	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	487	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	488	REAL(wp) , INTENT( out), DIMENSION(:) :: pvar ! read field
	489	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	490	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kstart ! start axis position of the reading
	491	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kcount ! number of points in each axis
	492	!
[679]	493	IF( kiomid > 0 ) THEN
	494	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r1d=pvar, &
	495	& ktime=ktime, kstart=kstart, kcount=kcount )
	496	ENDIF
[550]	497	END SUBROUTINE iom_g1d
[544]	498
[550]	499	SUBROUTINE iom_g2d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount )
[544]	500	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	501	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	502	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	503	REAL(wp) , INTENT( out), DIMENSION(:,:) :: pvar ! read field
	504	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	505	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kstart ! start axis position of the reading
	506	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kcount ! number of points in each axis
	507	!
[679]	508	IF( kiomid > 0 ) THEN
	509	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r2d=pvar, &
	510	& ktime=ktime, kstart=kstart, kcount=kcount )
	511	ENDIF
[550]	512	END SUBROUTINE iom_g2d
[544]	513
[550]	514	SUBROUTINE iom_g3d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount )
[544]	515	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	516	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	517	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	518	REAL(wp) , INTENT( out), DIMENSION(:,:,:) :: pvar ! read field
	519	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	520	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kstart ! start axis position of the reading
	521	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kcount ! number of points in each axis
	522	!
[679]	523	IF( kiomid > 0 ) THEN
	524	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r3d=pvar, &
	525	& ktime=ktime, kstart=kstart, kcount=kcount )
	526	ENDIF
[550]	527	END SUBROUTINE iom_g3d
[544]	528	!!----------------------------------------------------------------------
	529
	530	SUBROUTINE iom_get_123d( kiomid, kdom , cdvar , &
[679]	531	& pv_r1d, pv_r2d, pv_r3d, &
	532	& ktime , kstart, kcount )
[544]	533	!!-----------------------------------------------------------------------
	534	!! * ROUTINE iom_get_123d *
	535	!!
	536	!! ** Purpose : read a 1D/2D/3D variable
	537	!!
	538	!! ** Method : read ONE record at each CALL
	539	!!-----------------------------------------------------------------------
	540	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	541	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	542	CHARACTER(len=*) , INTENT(in ) :: cdvar ! Name of the variable
	543	REAL(wp), DIMENSION(:) , INTENT( out), OPTIONAL :: pv_r1d ! read field (1D case)
	544	REAL(wp), DIMENSION(:,:) , INTENT( out), OPTIONAL :: pv_r2d ! read field (2D case)
	545	REAL(wp), DIMENSION(:,:,:) , INTENT( out), OPTIONAL :: pv_r3d ! read field (3D case)
	546	INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
	547	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kstart ! start position of the reading in each axis
	548	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kcount ! number of points to be read in each axis
	549	!
[1200]	550	LOGICAL :: llnoov ! local definition to read overlap
[544]	551	INTEGER :: jl ! loop on number of dimension
	552	INTEGER :: idom ! type of domain
	553	INTEGER :: idvar ! id of the variable
	554	INTEGER :: inbdim ! number of dimensions of the variable
	555	INTEGER :: idmspc ! number of spatial dimensions
	556	INTEGER :: itime ! record number
	557	INTEGER :: istop ! temporary value of nstop
[679]	558	INTEGER :: ix1, ix2, iy1, iy2 ! subdomain indexes
	559	INTEGER :: ji, jj ! loop counters
	560	INTEGER :: irankpv !
	561	INTEGER :: ind1, ind2 ! substring index
[544]	562	INTEGER, DIMENSION(jpmax_dims) :: istart ! starting point to read for each axis
	563	INTEGER, DIMENSION(jpmax_dims) :: icnt ! number of value to read along each axis
	564	INTEGER, DIMENSION(jpmax_dims) :: idimsz ! size of the dimensions of the variable
[679]	565	INTEGER, DIMENSION(jpmax_dims) :: ishape ! size of the dimensions of the variable
[544]	566	REAL(wp) :: zscf, zofs ! sacle_factor and add_offset
	567	INTEGER :: itmp ! temporary integer
[3940]	568	CHARACTER(LEN=256) :: clinfo ! info character
	569	CHARACTER(LEN=256) :: clname ! file name
[679]	570	CHARACTER(LEN=1) :: clrankpv, cldmspc !
[544]	571	!---------------------------------------------------------------------
	572	!
[679]	573	clname = iom_file(kiomid)%name ! esier to read
	574	clinfo = ' iom_get_123d, file: '//trim(clname)//', var: '//trim(cdvar)
[544]	575	! local definition of the domain ?
	576	idom = kdom
[1200]	577	! do we read the overlap
	578	! ugly patch SM+JMM+RB to overwrite global definition in some cases
[1202]	579	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
[544]	580	! check kcount and kstart optionals parameters...
[679]	581	IF( PRESENT(kcount) .AND. (.NOT. PRESENT(kstart)) ) CALL ctl_stop(trim(clinfo), 'kcount present needs kstart present')
	582	IF( PRESENT(kstart) .AND. (.NOT. PRESENT(kcount)) ) CALL ctl_stop(trim(clinfo), 'kstart present needs kcount present')
	583	IF( PRESENT(kstart) .AND. idom /= jpdom_unknown ) CALL ctl_stop(trim(clinfo), 'kstart present needs kdom = jpdom_unknown')
[544]	584
	585	! Search for the variable in the data base (eventually actualize data)
	586	istop = nstop
	587	idvar = iom_varid( kiomid, cdvar )
	588	!
	589	IF( idvar > 0 ) THEN
	590	! to write iom_file(kiomid)%dimsz in a shorter way !
	591	idimsz(:) = iom_file(kiomid)%dimsz(:, idvar)
	592	inbdim = iom_file(kiomid)%ndims(idvar) ! number of dimensions in the file
	593	idmspc = inbdim ! number of spatial dimensions in the file
	594	IF( iom_file(kiomid)%luld(idvar) ) idmspc = inbdim - 1
[679]	595	IF( idmspc > 3 ) CALL ctl_stop(trim(clinfo), 'the file has more than 3 spatial dimensions this case is not coded...')
	596	!
	597	! update idom definition...
	598	! Identify the domain in case of jpdom_auto(glo/dta) definition
	599	IF( idom == jpdom_autoglo .OR. idom == jpdom_autodta ) THEN
	600	IF( idom == jpdom_autoglo ) THEN ; idom = jpdom_global
	601	ELSE ; idom = jpdom_data
[544]	602	ENDIF
[679]	603	ind1 = INDEX( clname, '_', back = .TRUE. ) + 1
	604	ind2 = INDEX( clname, '.', back = .TRUE. ) - 1
	605	IF( ind2 > ind1 ) THEN ; IF( VERIFY( clname(ind1:ind2), '0123456789' ) == 0 ) idom = jpdom_local ; ENDIF
[544]	606	ENDIF
[679]	607	! Identify the domain in case of jpdom_local definition
	608	IF( idom == jpdom_local ) THEN
	609	IF( idimsz(1) == jpi .AND. idimsz(2) == jpj ) THEN ; idom = jpdom_local_full
	610	ELSEIF( idimsz(1) == nlci .AND. idimsz(2) == nlcj ) THEN ; idom = jpdom_local_noextra
	611	ELSEIF( idimsz(1) == (nlei - nldi + 1) .AND. idimsz(2) == (nlej - nldj + 1) ) THEN ; idom = jpdom_local_noovlap
	612	ELSE ; CALL ctl_stop( trim(clinfo), 'impossible to identify the local domain' )
	613	ENDIF
	614	ENDIF
[544]	615	!
[679]	616	! check the consistency between input array and data rank in the file
[544]	617	!
	618	! initializations
	619	itime = 1
	620	IF( PRESENT(ktime) ) itime = ktime
[679]	621
	622	irankpv = 1 * COUNT( (/PRESENT(pv_r1d)/) ) + 2 * COUNT( (/PRESENT(pv_r2d)/) ) + 3 * COUNT( (/PRESENT(pv_r3d)/) )
	623	WRITE(clrankpv, fmt='(i1)') irankpv
	624	WRITE(cldmspc , fmt='(i1)') idmspc
[544]	625	!
[679]	626	IF( idmspc < irankpv ) THEN
	627	CALL ctl_stop( TRIM(clinfo), 'The file has only '//cldmspc//' spatial dimension', &
	628	& 'it is impossible to read a '//clrankpv//'D array from this file...' )
	629	ELSEIF( idmspc == irankpv ) THEN
	630	IF( PRESENT(pv_r1d) .AND. idom /= jpdom_unknown ) &
	631	& CALL ctl_stop( TRIM(clinfo), 'case not coded...You must use jpdom_unknown' )
	632	ELSEIF( idmspc > irankpv ) THEN
	633	IF( PRESENT(pv_r2d) .AND. itime == 1 .AND. idimsz(3) == 1 .AND. idmspc == 3 ) THEN
	634	CALL ctl_warn( trim(clinfo), '2D array but 3 spatial dimensions for the data...' , &
	635	& 'As the size of the z dimension is 1 and as we try to read the first record, ', &
	636	& 'we accept this case, even if there is a possible mix-up between z and time dimension' )
	637	idmspc = idmspc - 1
[544]	638	ELSE
[679]	639	CALL ctl_stop( TRIM(clinfo), 'To keep iom lisibility, when reading a '//clrankpv//'D array,' , &
	640	& 'we do not accept data with more than '//cldmspc//' spatial dimension', &
	641	& 'Use ncwa -a to suppress the unnecessary dimensions' )
[544]	642	ENDIF
[679]	643	ENDIF
	644
	645	!
	646	! definition of istart and icnt
	647	!
	648	icnt (:) = 1
	649	istart(:) = 1
	650	istart(idmspc+1) = itime
	651
	652	IF( PRESENT(kstart) ) THEN ; istart(1:idmspc) = kstart(1:idmspc) ; icnt(1:idmspc) = kcount(1:idmspc)
	653	ELSE
	654	IF( idom == jpdom_unknown ) THEN ; icnt(1:idmspc) = idimsz(1:idmspc)
	655	ELSE
	656	IF( .NOT. PRESENT(pv_r1d) ) THEN ! not a 1D array
	657	IF( idom == jpdom_data ) THEN ; istart(1:2) = (/ mig(1), mjg(1) /) ! icnt(1:2) done bellow
	658	ELSEIF( idom == jpdom_global ) THEN ; istart(1:2) = (/ nimpp , njmpp /) ! icnt(1:2) done bellow
[544]	659	ENDIF
[679]	660	! we do not read the overlap -> we start to read at nldi, nldj
	661	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	662	! IF( idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[1200]	663	IF( llnoov .AND. idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[679]	664	! we do not read the overlap and the extra-halos -> from nldi to nlei and from nldj to nlej
	665	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	666	! icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
[1200]	667	IF( llnoov ) THEN ; icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	668	ELSE ; icnt(1:2) = (/ nlci , nlcj /)
[544]	669	ENDIF
[679]	670	IF( PRESENT(pv_r3d) ) THEN
	671	IF( idom == jpdom_data ) THEN ; icnt(3) = jpkdta
	672	ELSE ; icnt(3) = jpk
[544]	673	ENDIF
	674	ENDIF
	675	ENDIF
[679]	676	ENDIF
[544]	677	ENDIF
	678
	679	! check that istart and icnt can be used with this file
	680	!-
	681	DO jl = 1, jpmax_dims
	682	itmp = istart(jl)+icnt(jl)-1
[679]	683	IF( itmp > idimsz(jl) .AND. idimsz(jl) /= 0 ) THEN
	684	WRITE( ctmp1, FMT="('(istart(', i1, ') + icnt(', i1, ') - 1) = ', i5)" ) jl, jl, itmp
	685	WRITE( ctmp2, FMT="(' is larger than idimsz(', i1,') = ', i5)" ) jl, idimsz(jl)
[544]	686	CALL ctl_stop( trim(clinfo), 'start and count too big regarding to the size of the data, ', ctmp1, ctmp2 )
	687	ENDIF
	688	END DO
	689
	690	! check that icnt matches the input array
	691	!-
[679]	692	IF( idom == jpdom_unknown ) THEN
	693	IF( irankpv == 1 ) ishape(1:1) = SHAPE(pv_r1d)
	694	IF( irankpv == 2 ) ishape(1:2) = SHAPE(pv_r2d)
	695	IF( irankpv == 3 ) ishape(1:3) = SHAPE(pv_r3d)
	696	ctmp1 = 'd'
	697	ELSE
	698	IF( irankpv == 2 ) THEN
	699	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	700	! ishape(1:2) = SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1 = 'd(nldi:nlei,nldj:nlej)'
[1200]	701	IF( llnoov ) THEN ; ishape(1:2)=SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1='d(nldi:nlei,nldj:nlej)'
	702	ELSE ; ishape(1:2)=SHAPE(pv_r2d(1 :nlci,1 :nlcj )) ; ctmp1='d(1:nlci,1:nlcj)'
[544]	703	ENDIF
[679]	704	ENDIF
	705	IF( irankpv == 3 ) THEN
	706	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	707	! ishape(1:3) = SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1 = 'd(nldi:nlei,nldj:nlej,:)'
[1200]	708	IF( llnoov ) THEN ; ishape(1:3)=SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1='d(nldi:nlei,nldj:nlej,:)'
	709	ELSE ; ishape(1:3)=SHAPE(pv_r3d(1 :nlci,1 :nlcj,:)) ; ctmp1='d(1:nlci,1:nlcj,:)'
[544]	710	ENDIF
[679]	711	ENDIF
[544]	712	ENDIF
[679]	713
	714	DO jl = 1, irankpv
	715	WRITE( ctmp2, FMT="(', ', i1,'): ', i5,' /= icnt(', i1,'):', i5)" ) jl, ishape(jl), jl, icnt(jl)
	716	IF( ishape(jl) /= icnt(jl) ) CALL ctl_stop( TRIM(clinfo), 'size(pv_r'//clrankpv//TRIM(ctmp1)//TRIM(ctmp2) )
	717	END DO
	718
[544]	719	ENDIF
	720
	721	! read the data
	722	!-
[679]	723	IF( idvar > 0 .AND. istop == nstop ) THEN ! no additional errors until this point...
[544]	724	!
[679]	725	! find the right index of the array to be read
	726	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	727	! IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	728	! ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	729	! ENDIF
[1200]	730	IF( llnoov ) THEN
[679]	731	IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	732	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	733	ENDIF
	734	ELSE
	735	IF( idom /= jpdom_unknown ) THEN ; ix1 = 1 ; ix2 = nlci ; iy1 = 1 ; iy2 = nlcj
	736	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	737	ENDIF
	738	ENDIF
	739
[544]	740	SELECT CASE (iom_file(kiomid)%iolib)
[679]	741	CASE (jpioipsl ) ; CALL iom_ioipsl_get( kiomid, idvar, inbdim, istart, icnt, ix1, ix2, iy1, iy2, &
	742	& pv_r1d, pv_r2d, pv_r3d )
	743	CASE (jpnf90 ) ; CALL iom_nf90_get( kiomid, idvar, inbdim, istart, icnt, ix1, ix2, iy1, iy2, &
	744	& pv_r1d, pv_r2d, pv_r3d )
	745	CASE (jprstdimg) ; CALL iom_rstdimg_get( kiomid, idom, idvar, ix1, ix2, iy1, iy2, &
	746	& pv_r1d, pv_r2d, pv_r3d )
[544]	747	CASE DEFAULT
	748	CALL ctl_stop( TRIM(clinfo)//' accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	749	END SELECT
[679]	750
	751	IF( istop == nstop ) THEN ! no additional errors until this point...
[1191]	752	IF(lwp) WRITE(numout,"(10x,' read ',a,' (rec: ',i4,') in ',a,' ok')") TRIM(cdvar), itime, TRIM(iom_file(kiomid)%name)
	753
[679]	754	!--- overlap areas and extra hallows (mpp)
	755	IF( PRESENT(pv_r2d) .AND. idom /= jpdom_unknown ) THEN
	756	CALL lbc_lnk( pv_r2d,'Z',-999.,'no0' )
	757	ELSEIF( PRESENT(pv_r3d) .AND. idom /= jpdom_unknown ) THEN
	758	! this if could be simplified with the new lbc_lnk that works with any size of the 3rd dimension
	759	IF( icnt(3) == jpk ) THEN
	760	CALL lbc_lnk( pv_r3d,'Z',-999.,'no0' )
	761	ELSE ! put some arbitrary value (a call to lbc_lnk will be done later...)
	762	DO jj = nlcj+1, jpj ; pv_r3d(1:nlci, jj, :) = pv_r3d(1:nlci, nlej, :) ; END DO
	763	DO ji = nlci+1, jpi ; pv_r3d(ji , : , :) = pv_r3d(nlei , : , :) ; END DO
	764	ENDIF
	765	ENDIF
	766
[3764]	767	! C1D case : always call lbc_lnk to replicate the central value over the whole 3X3 domain
	768	IF( lk_c1d .AND. PRESENT(pv_r2d) ) CALL lbc_lnk( pv_r2d,'Z',1. )
	769	IF( lk_c1d .AND. PRESENT(pv_r3d) ) CALL lbc_lnk( pv_r3d,'Z',1. )
	770
[679]	771	!--- Apply scale_factor and offset
	772	zscf = iom_file(kiomid)%scf(idvar) ! scale factor
	773	zofs = iom_file(kiomid)%ofs(idvar) ! offset
	774	IF( PRESENT(pv_r1d) ) THEN
	775	IF( zscf /= 1. ) pv_r1d(:) = pv_r1d(:) * zscf
	776	IF( zofs /= 0. ) pv_r1d(:) = pv_r1d(:) + zofs
	777	ELSEIF( PRESENT(pv_r2d) ) THEN
[1697]	778	!CDIR COLLAPSE
[679]	779	IF( zscf /= 1.) pv_r2d(:,:) = pv_r2d(:,:) * zscf
[1697]	780	!CDIR COLLAPSE
[679]	781	IF( zofs /= 0.) pv_r2d(:,:) = pv_r2d(:,:) + zofs
	782	ELSEIF( PRESENT(pv_r3d) ) THEN
[1697]	783	!CDIR COLLAPSE
[679]	784	IF( zscf /= 1.) pv_r3d(:,:,:) = pv_r3d(:,:,:) * zscf
[1697]	785	!CDIR COLLAPSE
[679]	786	IF( zofs /= 0.) pv_r3d(:,:,:) = pv_r3d(:,:,:) + zofs
	787	ENDIF
	788	!
[544]	789	ENDIF
	790	!
	791	ENDIF
	792	!
	793	END SUBROUTINE iom_get_123d
	794
	795
[911]	796	SUBROUTINE iom_gettime( kiomid, ptime, cdvar, kntime, cdunits, cdcalendar )
[544]	797	!!--------------------------------------------------------------------
	798	!! * SUBROUTINE iom_gettime *
	799	!!
	800	!! ** Purpose : read the time axis cdvar in the file
	801	!!--------------------------------------------------------------------
[911]	802	INTEGER , INTENT(in ) :: kiomid ! file Identifier
	803	REAL(wp), DIMENSION(:) , INTENT( out) :: ptime ! the time axis
	804	CHARACTER(len=*), OPTIONAL , INTENT(in ) :: cdvar ! time axis name
	805	INTEGER , OPTIONAL , INTENT( out) :: kntime ! number of times in file
	806	CHARACTER(len=*), OPTIONAL , INTENT( out) :: cdunits ! units attribute of time coordinate
	807	CHARACTER(len=*), OPTIONAL , INTENT( out) :: cdcalendar ! calendar attribute of
[544]	808	!
[911]	809	INTEGER, DIMENSION(1) :: kdimsz
[544]	810	INTEGER :: idvar ! id of the variable
[911]	811	CHARACTER(LEN=32) :: tname ! local name of time coordinate
[544]	812	CHARACTER(LEN=100) :: clinfo ! info character
	813	!---------------------------------------------------------------------
	814	!
[911]	815	IF ( PRESENT(cdvar) ) THEN
	816	tname = cdvar
	817	ELSE
	818	tname = iom_file(kiomid)%uldname
	819	ENDIF
[679]	820	IF( kiomid > 0 ) THEN
[911]	821	clinfo = 'iom_gettime, file: '//trim(iom_file(kiomid)%name)//', var: '//trim(tname)
	822	IF ( PRESENT(kntime) ) THEN
	823	idvar = iom_varid( kiomid, tname, kdimsz = kdimsz )
	824	kntime = kdimsz(1)
	825	ELSE
	826	idvar = iom_varid( kiomid, tname )
	827	ENDIF
[679]	828	!
	829	ptime(:) = 0. ! default definition
	830	IF( idvar > 0 ) THEN
	831	IF( iom_file(kiomid)%ndims(idvar) == 1 ) THEN
	832	IF( iom_file(kiomid)%luld(idvar) ) THEN
[2499]	833	IF( iom_file(kiomid)%dimsz(1,idvar) <= size(ptime) ) THEN
[679]	834	SELECT CASE (iom_file(kiomid)%iolib)
[911]	835	CASE (jpioipsl ) ; CALL iom_ioipsl_gettime( kiomid, idvar, ptime, cdunits, cdcalendar )
	836	CASE (jpnf90 ) ; CALL iom_nf90_gettime( kiomid, idvar, ptime, cdunits, cdcalendar )
[679]	837	CASE (jprstdimg) ; CALL ctl_stop( TRIM(clinfo)//' case IO library == jprstdimg not coded...' )
	838	CASE DEFAULT
	839	CALL ctl_stop( TRIM(clinfo)//' accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	840	END SELECT
	841	ELSE
	842	WRITE(ctmp1,*) 'error with the size of ptime ',size(ptime),iom_file(kiomid)%dimsz(1,idvar)
	843	CALL ctl_stop( trim(clinfo), trim(ctmp1) )
	844	ENDIF
[544]	845	ELSE
[679]	846	CALL ctl_stop( trim(clinfo), 'variable dimension is not unlimited... use iom_get' )
[544]	847	ENDIF
	848	ELSE
[679]	849	CALL ctl_stop( trim(clinfo), 'the variable has more than 1 dimension' )
[544]	850	ENDIF
	851	ELSE
[679]	852	CALL ctl_stop( trim(clinfo), 'variable not found in '//iom_file(kiomid)%name )
[544]	853	ENDIF
	854	ENDIF
	855	!
	856	END SUBROUTINE iom_gettime
	857
	858
	859	!!----------------------------------------------------------------------
[2528]	860	!! INTERFACE iom_getatt
	861	!!----------------------------------------------------------------------
	862	SUBROUTINE iom_g0d_intatt( kiomid, cdatt, pvar )
	863	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	864	CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
	865	INTEGER , INTENT( out) :: pvar ! read field
	866	!
	867	IF( kiomid > 0 ) THEN
	868	IF( iom_file(kiomid)%nfid > 0 ) THEN
	869	SELECT CASE (iom_file(kiomid)%iolib)
	870	CASE (jpioipsl ) ; CALL ctl_stop('iom_getatt: only nf90 available')
	871	CASE (jpnf90 ) ; CALL iom_nf90_getatt( kiomid, cdatt, pvar )
	872	CASE (jprstdimg) ; CALL ctl_stop('iom_getatt: only nf90 available')
	873	CASE DEFAULT
	874	CALL ctl_stop( 'iom_g0d_att: accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	875	END SELECT
	876	ENDIF
	877	ENDIF
	878	END SUBROUTINE iom_g0d_intatt
	879
	880
	881	!!----------------------------------------------------------------------
[544]	882	!! INTERFACE iom_rstput
	883	!!----------------------------------------------------------------------
[550]	884	SUBROUTINE iom_rp0d( kt, kwrite, kiomid, cdvar, pvar, ktype )
[544]	885	INTEGER , INTENT(in) :: kt ! ocean time-step
	886	INTEGER , INTENT(in) :: kwrite ! writing time-step
	887	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	888	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[556]	889	REAL(wp) , INTENT(in) :: pvar ! written field
[544]	890	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
	891	INTEGER :: ivid ! variable id
[679]	892	IF( kiomid > 0 ) THEN
	893	IF( iom_file(kiomid)%nfid > 0 ) THEN
[745]	894	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[679]	895	SELECT CASE (iom_file(kiomid)%iolib)
	896	CASE (jpioipsl ) ; CALL iom_ioipsl_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r0d = pvar )
	897	CASE (jpnf90 ) ; CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r0d = pvar )
	898	CASE (jprstdimg) ; IF( kt == kwrite ) CALL iom_rstdimg_rstput( kiomid, cdvar, ivid, pvar )
	899	CASE DEFAULT
	900	CALL ctl_stop( 'iom_rp0d: accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	901	END SELECT
	902	ENDIF
	903	ENDIF
[550]	904	END SUBROUTINE iom_rp0d
[544]	905
[550]	906	SUBROUTINE iom_rp1d( kt, kwrite, kiomid, cdvar, pvar, ktype )
[544]	907	INTEGER , INTENT(in) :: kt ! ocean time-step
	908	INTEGER , INTENT(in) :: kwrite ! writing time-step
	909	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	910	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	911	REAL(wp) , INTENT(in), DIMENSION( :) :: pvar ! written field
[544]	912	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
	913	INTEGER :: ivid ! variable id
[679]	914	IF( kiomid > 0 ) THEN
	915	IF( iom_file(kiomid)%nfid > 0 ) THEN
[745]	916	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[679]	917	SELECT CASE (iom_file(kiomid)%iolib)
	918	CASE (jpioipsl ) ; CALL iom_ioipsl_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r1d = pvar )
	919	CASE (jpnf90 ) ; CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r1d = pvar )
	920	CASE (jprstdimg) ; IF( kt == kwrite ) CALL iom_rstdimg_rstput( kiomid, cdvar, ivid, pv_r1d = pvar )
	921	CASE DEFAULT
	922	CALL ctl_stop( 'iom_rp1d: accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	923	END SELECT
	924	ENDIF
	925	ENDIF
[550]	926	END SUBROUTINE iom_rp1d
[544]	927
[550]	928	SUBROUTINE iom_rp2d( kt, kwrite, kiomid, cdvar, pvar, ktype )
[544]	929	INTEGER , INTENT(in) :: kt ! ocean time-step
	930	INTEGER , INTENT(in) :: kwrite ! writing time-step
	931	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	932	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	933	REAL(wp) , INTENT(in), DIMENSION(:, : ) :: pvar ! written field
[544]	934	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
	935	INTEGER :: ivid ! variable id
[679]	936	IF( kiomid > 0 ) THEN
	937	IF( iom_file(kiomid)%nfid > 0 ) THEN
[745]	938	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[679]	939	SELECT CASE (iom_file(kiomid)%iolib)
	940	CASE (jpioipsl ) ; CALL iom_ioipsl_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r2d = pvar )
	941	CASE (jpnf90 ) ; CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r2d = pvar )
	942	CASE (jprstdimg) ; IF( kt == kwrite ) CALL iom_rstdimg_rstput( kiomid, cdvar, ivid, pv_r2d = pvar )
	943	CASE DEFAULT
	944	CALL ctl_stop( 'iom_rp2d: accepted IO library are only jpioipsl, jpnf90 and jprstdimg' )
	945	END SELECT
	946	ENDIF
	947	ENDIF
[550]	948	END SUBROUTINE iom_rp2d
[544]	949
[550]	950	SUBROUTINE iom_rp3d( kt, kwrite, kiomid, cdvar, pvar, ktype )
[544]	951	INTEGER , INTENT(in) :: kt ! ocean time-step
	952	INTEGER , INTENT(in) :: kwrite ! writing time-step
	953	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	954	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	955	REAL(wp) , INTENT(in), DIMENSION(:,:,:) :: pvar ! written field
[544]	956	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
	957	INTEGER :: ivid ! variable id
[679]	958	IF( kiomid > 0 ) THEN
	959	IF( iom_file(kiomid)%nfid > 0 ) THEN
[745]	960	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[679]	961	SELECT CASE (iom_file(kiomid)%iolib)
	962	CASE (jpioipsl ) ; CALL iom_ioipsl_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r3d = pvar )
	963	CASE (jpnf90 ) ; CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r3d = pvar )
	964	CASE (jprstdimg) ; IF( kt == kwrite ) CALL iom_rstdimg_rstput( kiomid, cdvar, ivid, pv_r3d = pvar )
	965	CASE DEFAULT
	966	CALL ctl_stop( 'iom_rp3d: accepted IO library are only jpioipsl and jprstdimg' )
	967	END SELECT
	968	ENDIF
	969	ENDIF
[550]	970	END SUBROUTINE iom_rp3d
[1359]	971
	972
[544]	973	!!----------------------------------------------------------------------
[1457]	974	!! INTERFACE iom_put
[1359]	975	!!----------------------------------------------------------------------
[1738]	976	SUBROUTINE iom_p0d( cdname, pfield0d )
	977	CHARACTER(LEN=*), INTENT(in) :: cdname
	978	REAL(wp) , INTENT(in) :: pfield0d
	979	#if defined key_iomput
[3695]	980	CALL xios_send_field(cdname, (/pfield0d/))
[1738]	981	#else
	982	IF( .FALSE. ) WRITE(numout,*) cdname, pfield0d ! useless test to avoid compilation warnings
	983	#endif
	984	END SUBROUTINE iom_p0d
	985
[3294]	986	SUBROUTINE iom_p1d( cdname, pfield1d )
	987	CHARACTER(LEN=*) , INTENT(in) :: cdname
	988	REAL(wp), DIMENSION(:), INTENT(in) :: pfield1d
	989	#if defined key_iomput
[3695]	990	CALL xios_send_field( cdname, RESHAPE( (/pfield1d/), (/1,1,SIZE(pfield1d)/) ) )
[3294]	991	#else
	992	IF( .FALSE. ) WRITE(numout,*) cdname, pfield1d ! useless test to avoid compilation warnings
	993	#endif
	994	END SUBROUTINE iom_p1d
	995
[1359]	996	SUBROUTINE iom_p2d( cdname, pfield2d )
	997	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	998	REAL(wp), DIMENSION(:,:), INTENT(in) :: pfield2d
[1412]	999	#if defined key_iomput
[3695]	1000	CALL xios_send_field(cdname, pfield2d)
[1520]	1001	#else
	1002	IF( .FALSE. ) WRITE(numout,*) cdname, pfield2d ! useless test to avoid compilation warnings
[1359]	1003	#endif
	1004	END SUBROUTINE iom_p2d
[544]	1005
[1359]	1006	SUBROUTINE iom_p3d( cdname, pfield3d )
	1007	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1008	REAL(wp), DIMENSION(:,:,:), INTENT(in) :: pfield3d
[1412]	1009	#if defined key_iomput
[3695]	1010	CALL xios_send_field(cdname, pfield3d)
[1520]	1011	#else
	1012	IF( .FALSE. ) WRITE(numout,*) cdname, pfield3d ! useless test to avoid compilation warnings
[1359]	1013	#endif
	1014	END SUBROUTINE iom_p3d
	1015	!!----------------------------------------------------------------------
[544]	1016
[1412]	1017	#if defined key_iomput
[1359]	1018
[3940]	1019	SUBROUTINE iom_set_domain_attr( cdid, ni_glo, nj_glo, ibegin, jbegin, ni, nj, zoom_ibegin, zoom_jbegin, zoom_ni, zoom_nj, &
[3771]	1020	& data_dim, data_ibegin, data_ni, data_jbegin, data_nj, lonvalue, latvalue, mask )
[3940]	1021	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3771]	1022	INTEGER , OPTIONAL, INTENT(in) :: ni_glo, nj_glo, ibegin, jbegin, ni, nj
	1023	INTEGER , OPTIONAL, INTENT(in) :: data_dim, data_ibegin, data_ni, data_jbegin, data_nj
	1024	INTEGER , OPTIONAL, INTENT(in) :: zoom_ibegin, zoom_jbegin, zoom_ni, zoom_nj
	1025	REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: lonvalue, latvalue
	1026	LOGICAL, DIMENSION(:,:), OPTIONAL, INTENT(in) :: mask
[3695]	1027
[3940]	1028	IF ( xios_is_valid_domain (cdid) ) THEN
	1029	CALL xios_set_domain_attr ( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1030	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
	1031	& zoom_ibegin=zoom_ibegin, zoom_jbegin=zoom_jbegin, zoom_ni=zoom_ni, zoom_nj=zoom_nj, &
[3771]	1032	& lonvalue=lonvalue, latvalue=latvalue,mask=mask )
[3695]	1033	ENDIF
	1034
[3940]	1035	IF ( xios_is_valid_domaingroup(cdid) ) THEN
	1036	CALL xios_set_domaingroup_attr( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1037	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
	1038	& zoom_ibegin=zoom_ibegin, zoom_jbegin=zoom_jbegin, zoom_ni=zoom_ni, zoom_nj=zoom_nj, &
[3771]	1039	& lonvalue=lonvalue, latvalue=latvalue,mask=mask )
[3695]	1040	ENDIF
[3940]	1041	CALL xios_solve_inheritance()
[3695]	1042
	1043	END SUBROUTINE iom_set_domain_attr
	1044
	1045
[3940]	1046	SUBROUTINE iom_set_axis_attr( cdid, paxis )
	1047	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3737]	1048	REAL(wp), DIMENSION(:), INTENT(in) :: paxis
[3940]	1049	IF ( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, size=size(paxis),value=paxis )
	1050	IF ( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, size=size(paxis),value=paxis )
	1051	CALL xios_solve_inheritance()
[3737]	1052	END SUBROUTINE iom_set_axis_attr
	1053
	1054
[3940]	1055	SUBROUTINE iom_set_field_attr( cdid, freq_op, freq_offset )
	1056	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3695]	1057	CHARACTER(LEN=*),OPTIONAL , INTENT(in) :: freq_op
[3940]	1058	CHARACTER(LEN=*),OPTIONAL , INTENT(in) :: freq_offset
	1059	IF ( xios_is_valid_field (cdid) ) CALL xios_set_field_attr ( cdid, freq_op=freq_op, freq_offset=freq_offset )
	1060	IF ( xios_is_valid_fieldgroup(cdid) ) CALL xios_set_fieldgroup_attr( cdid, freq_op=freq_op, freq_offset=freq_offset )
	1061	CALL xios_solve_inheritance()
[3695]	1062	END SUBROUTINE iom_set_field_attr
	1063
	1064
[3940]	1065	SUBROUTINE iom_set_file_attr( cdid, name, name_suffix )
	1066	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3695]	1067	CHARACTER(LEN=*),OPTIONAL , INTENT(in) :: name, name_suffix
[3940]	1068	IF ( xios_is_valid_file (cdid) ) CALL xios_set_file_attr ( cdid, name=name, name_suffix=name_suffix )
	1069	IF ( xios_is_valid_filegroup(cdid) ) CALL xios_set_filegroup_attr( cdid, name=name, name_suffix=name_suffix )
	1070	CALL xios_solve_inheritance()
[3771]	1071	END SUBROUTINE iom_set_file_attr
[3695]	1072
	1073
[3940]	1074	SUBROUTINE iom_get_file_attr( cdid, name, name_suffix, output_freq )
	1075	CHARACTER(LEN=*) , INTENT(in ) :: cdid
	1076	CHARACTER(LEN=*),OPTIONAL , INTENT(out) :: name, name_suffix, output_freq
	1077	LOGICAL :: llexist1,llexist2,llexist3
	1078	!---------------------------------------------------------------------
	1079	IF( PRESENT( name ) ) name = '' ! default values
	1080	IF( PRESENT( name_suffix ) ) name_suffix = ''
	1081	IF( PRESENT( output_freq ) ) output_freq = ''
	1082	IF ( xios_is_valid_file (cdid) ) THEN
	1083	CALL xios_solve_inheritance()
	1084	CALL xios_is_defined_file_attr ( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1085	IF(llexist1) CALL xios_get_file_attr ( cdid, name = name )
	1086	IF(llexist2) CALL xios_get_file_attr ( cdid, name_suffix = name_suffix )
	1087	IF(llexist3) CALL xios_get_file_attr ( cdid, output_freq = output_freq )
	1088	ENDIF
	1089	IF ( xios_is_valid_filegroup(cdid) ) THEN
	1090	CALL xios_solve_inheritance()
	1091	CALL xios_is_defined_filegroup_attr( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1092	IF(llexist1) CALL xios_get_filegroup_attr( cdid, name = name )
	1093	IF(llexist2) CALL xios_get_filegroup_attr( cdid, name_suffix = name_suffix )
	1094	IF(llexist3) CALL xios_get_filegroup_attr( cdid, output_freq = output_freq )
	1095	ENDIF
	1096	END SUBROUTINE iom_get_file_attr
	1097
	1098
	1099	SUBROUTINE iom_set_grid_attr( cdid, mask )
	1100	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3771]	1101	LOGICAL, DIMENSION(:,:,:), OPTIONAL, INTENT(in) :: mask
[3940]	1102	IF ( xios_is_valid_grid (cdid) ) CALL xios_set_grid_attr ( cdid, mask=mask )
	1103	IF ( xios_is_valid_gridgroup(cdid) ) CALL xios_set_gridgroup_attr( cdid, mask=mask )
	1104	CALL xios_solve_inheritance()
[3771]	1105	END SUBROUTINE iom_set_grid_attr
[3695]	1106
	1107
[3771]	1108	SUBROUTINE set_grid( cdgrd, plon, plat )
[1359]	1109	!!----------------------------------------------------------------------
[3940]	1110	!! * ROUTINE set_grid *
[1359]	1111	!!
[1725]	1112	!! ** Purpose : define horizontal grids
[1359]	1113	!!
	1114	!!----------------------------------------------------------------------
[3771]	1115	CHARACTER(LEN=1) , INTENT(in) :: cdgrd
[1359]	1116	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plon
	1117	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat
[3771]	1118	!
	1119	REAL(wp), DIMENSION(jpi,jpj,jpk) :: zmask
[3695]	1120	INTEGER :: ni,nj
	1121
	1122	ni=nlei-nldi+1 ; nj=nlej-nldj+1
[1359]	1123
[3771]	1124	CALL iom_set_domain_attr("grid_"//cdgrd, ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-1, jbegin=njmpp+nldj-1, ni=ni, nj=nj)
	1125	CALL iom_set_domain_attr("grid_"//cdgrd, data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj)
	1126	CALL iom_set_domain_attr("grid_"//cdgrd, lonvalue = RESHAPE(plon(nldi:nlei, nldj:nlej),(/ ni*nj /)), &
	1127	& latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /)))
	1128
	1129	IF ( ln_mskland ) THEN
	1130	! mask land points, keep values on coast line -> specific mask for U, V and W points
	1131	SELECT CASE ( cdgrd )
	1132	CASE('T') ; zmask(:,:,:) = tmask(:,:,:)
	1133	CASE('U') ; zmask(2:jpim1,:,:) = tmask(2:jpim1,:,:) + tmask(3:jpi,:,:) ; CALL lbc_lnk( zmask, 'U', 1. )
	1134	CASE('V') ; zmask(:,2:jpjm1,:) = tmask(:,2:jpjm1,:) + tmask(:,3:jpi,:) ; CALL lbc_lnk( zmask, 'V', 1. )
	1135	CASE('W') ; zmask(:,:,2:jpk ) = tmask(:,:,1:jpkm1) + tmask(:,:,2:jpk) ; zmask(:,:,1) = tmask(:,:,1)
	1136	END SELECT
	1137	!
[3907]	1138	CALL iom_set_domain_attr( "grid_"//cdgrd , mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,1),(/ni,nj /)) /= 0. )
	1139	CALL iom_set_grid_attr ( "grid_"//cdgrd//"_3D", mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,:),(/ni,nj,jpk/)) /= 0. )
[3771]	1140	ENDIF
[3695]	1141
[1359]	1142	END SUBROUTINE set_grid
	1143
[1725]	1144
[1738]	1145	SUBROUTINE set_scalar
	1146	!!----------------------------------------------------------------------
[3940]	1147	!! * ROUTINE set_scalar *
[1738]	1148	!!
	1149	!! ** Purpose : define fake grids for scalar point
	1150	!!
	1151	!!----------------------------------------------------------------------
	1152	REAL(wp), DIMENSION(1,1) :: zz = 1.
	1153	!!----------------------------------------------------------------------
[3695]	1154	CALL iom_set_domain_attr('scalarpoint', ni_glo=jpnij, nj_glo=1, ibegin=narea, jbegin=1, ni=1, nj=1)
	1155	CALL iom_set_domain_attr('scalarpoint', data_dim=1)
	1156	CALL iom_set_domain_attr('scalarpoint', lonvalue=(/ zz /), latvalue=(/ zz /))
[1738]	1157
	1158	END SUBROUTINE set_scalar
	1159
	1160
[1725]	1161	SUBROUTINE set_xmlatt
	1162	!!----------------------------------------------------------------------
[3940]	1163	!! * ROUTINE set_xmlatt *
[1725]	1164	!!
	1165	!! ** Purpose : automatic definitions of some of the xml attributs...
	1166	!!
	1167	!!----------------------------------------------------------------------
	1168	CHARACTER(len=1),DIMENSION( 3) :: clgrd ! suffix name
[3940]	1169	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	1170	CHARACTER(len=1) :: cl1 ! 1 character
	1171	CHARACTER(len=2) :: cl2 ! 1 character
[3940]	1172	INTEGER :: ji, jg ! loop counters
[1725]	1173	INTEGER :: ix, iy ! i-,j- index
	1174	REAL(wp) ,DIMENSION(11) :: zlontao ! longitudes of tao moorings
	1175	REAL(wp) ,DIMENSION( 7) :: zlattao ! latitudes of tao moorings
	1176	REAL(wp) ,DIMENSION( 4) :: zlonrama ! longitudes of rama moorings
	1177	REAL(wp) ,DIMENSION(11) :: zlatrama ! latitudes of rama moorings
	1178	REAL(wp) ,DIMENSION( 3) :: zlonpira ! longitudes of pirata moorings
	1179	REAL(wp) ,DIMENSION( 9) :: zlatpira ! latitudes of pirata moorings
	1180	!!----------------------------------------------------------------------
	1181	!
	1182	! frequency of the call of iom_put (attribut: freq_op)
[3940]	1183	WRITE(cl1,'(i1)') 1 ; CALL iom_set_field_attr('field_definition', freq_op = cl1//'ts', freq_offset='0ts')
	1184	WRITE(cl1,'(i1)') nn_fsbc ; CALL iom_set_field_attr('SBC' , freq_op = cl1//'ts', freq_offset='0ts')
	1185	WRITE(cl1,'(i1)') nn_dttrc ; CALL iom_set_field_attr('ptrc_T' , freq_op = cl1//'ts', freq_offset='0ts')
	1186	WRITE(cl1,'(i1)') nn_dttrc ; CALL iom_set_field_attr('diad_T' , freq_op = cl1//'ts', freq_offset='0ts')
[3695]	1187
[1725]	1188	! output file names (attribut: name)
[3940]	1189	DO ji = 1, 9
	1190	WRITE(cl1,'(i1)') ji
	1191	CALL iom_update_file_name('file'//cl1)
[1725]	1192	END DO
[3940]	1193	DO ji = 1, 99
	1194	WRITE(cl2,'(i2.2)') ji
	1195	CALL iom_update_file_name('file'//cl2)
	1196	END DO
[1725]	1197
	1198	! Zooms...
	1199	clgrd = (/ 'T', 'U', 'W' /)
	1200	DO jg = 1, SIZE(clgrd) ! grid type
	1201	cl1 = clgrd(jg)
	1202	! Equatorial section (attributs: jbegin, ni, name_suffix)
	1203	CALL dom_ngb( 0., 0., ix, iy, cl1 )
[3940]	1204	CALL iom_set_domain_attr ('Eq'//cl1, zoom_jbegin=iy, zoom_ni=jpiglo)
	1205	CALL iom_get_file_attr ('Eq'//cl1, name_suffix = clsuff )
	1206	CALL iom_set_file_attr ('Eq'//cl1, name_suffix = TRIM(clsuff)//'_Eq')
	1207	CALL iom_update_file_name('Eq'//cl1)
[1725]	1208	END DO
	1209	! TAO moorings (attributs: ibegin, jbegin, name_suffix)
	1210	zlontao = (/ 137.0, 147.0, 156.0, 165.0, -180.0, -170.0, -155.0, -140.0, -125.0, -110.0, -95.0 /)
	1211	zlattao = (/ -8.0, -5.0, -2.0, 0.0, 2.0, 5.0, 8.0 /)
	1212	CALL set_mooring( zlontao, zlattao )
	1213	! RAMA moorings (attributs: ibegin, jbegin, name_suffix)
	1214	zlonrama = (/ 55.0, 67.0, 80.5, 90.0 /)
	1215	zlatrama = (/ -16.0, -12.0, -8.0, -4.0, -1.5, 0.0, 1.5, 4.0, 8.0, 12.0, 15.0 /)
	1216	CALL set_mooring( zlonrama, zlatrama )
	1217	! PIRATA moorings (attributs: ibegin, jbegin, name_suffix)
	1218	zlonpira = (/ -38.0, -23.0, -10.0 /)
	1219	zlatpira = (/ -19.0, -14.0, -8.0, 0.0, 4.0, 8.0, 12.0, 15.0, 20.0 /)
	1220	CALL set_mooring( zlonpira, zlatpira )
	1221
	1222	END SUBROUTINE set_xmlatt
	1223
	1224
	1225	SUBROUTINE set_mooring( plon, plat)
	1226	!!----------------------------------------------------------------------
[3940]	1227	!! * ROUTINE set_mooring *
[1725]	1228	!!
	1229	!! ** Purpose : automatic definitions of moorings xml attributs...
	1230	!!
	1231	!!----------------------------------------------------------------------
	1232	REAL(wp), DIMENSION(:), INTENT(in) :: plon, plat ! longitudes/latitudes oft the mooring
	1233	!
	1234	!!$ CHARACTER(len=1),DIMENSION(4) :: clgrd = (/ 'T', 'U', 'V', 'W' /) ! suffix name
	1235	CHARACTER(len=1),DIMENSION(1) :: clgrd = (/ 'T' /) ! suffix name
[3940]	1236	CHARACTER(len=256) :: clname ! file name
	1237	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	1238	CHARACTER(len=1) :: cl1 ! 1 character
	1239	CHARACTER(len=6) :: clon,clat ! name of longitude, latitude
	1240	INTEGER :: ji, jj, jg ! loop counters
	1241	INTEGER :: ix, iy ! i-,j- index
	1242	REAL(wp) :: zlon, zlat
	1243	!!----------------------------------------------------------------------
	1244	DO jg = 1, SIZE(clgrd)
	1245	cl1 = clgrd(jg)
	1246	DO ji = 1, SIZE(plon)
	1247	DO jj = 1, SIZE(plat)
	1248	zlon = plon(ji)
	1249	zlat = plat(jj)
	1250	! modifications for RAMA moorings
	1251	IF( zlon == 67. .AND. zlat == 15. ) zlon = 65.
	1252	IF( zlon == 90. .AND. zlat <= -4. ) zlon = 95.
	1253	IF( zlon == 95. .AND. zlat == -4. ) zlat = -5.
	1254	! modifications for PIRATA moorings
	1255	IF( zlon == -38. .AND. zlat == -19. ) zlon = -34.
	1256	IF( zlon == -38. .AND. zlat == -14. ) zlon = -32.
	1257	IF( zlon == -38. .AND. zlat == -8. ) zlon = -30.
	1258	IF( zlon == -38. .AND. zlat == 0. ) zlon = -35.
	1259	IF( zlon == -23. .AND. zlat == 20. ) zlat = 21.
	1260	IF( zlon == -10. .AND. zlat == -14. ) zlat = -10.
	1261	IF( zlon == -10. .AND. zlat == -8. ) zlat = -6.
	1262	IF( zlon == -10. .AND. zlat == 4. ) THEN ; zlon = 0. ; zlat = 0. ; ENDIF
	1263	CALL dom_ngb( zlon, zlat, ix, iy, cl1 )
	1264	IF( zlon >= 0. ) THEN
	1265	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT( zlon), 'e'
	1266	ELSE ; WRITE(clon, '(f5.1,a)') zlon , 'e'
	1267	ENDIF
	1268	ELSE
	1269	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT(-zlon), 'w'
	1270	ELSE ; WRITE(clon, '(f5.1,a)') -zlon , 'w'
	1271	ENDIF
	1272	ENDIF
	1273	IF( zlat >= 0. ) THEN
	1274	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT( zlat), 'n'
	1275	ELSE ; WRITE(clat, '(f4.1,a)') zlat , 'n'
	1276	ENDIF
	1277	ELSE
	1278	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT(-zlat), 's'
	1279	ELSE ; WRITE(clat, '(f4.1,a)') -zlat , 's'
	1280	ENDIF
	1281	ENDIF
	1282	clname = TRIM(ADJUSTL(clat))//TRIM(ADJUSTL(clon))
[3940]	1283	CALL iom_set_domain_attr (TRIM(clname)//cl1, zoom_ibegin= ix, zoom_jbegin= iy)
	1284	CALL iom_get_file_attr (TRIM(clname)//cl1, name_suffix = clsuff )
	1285	CALL iom_set_file_attr (TRIM(clname)//cl1, name_suffix = TRIM(clsuff)//'_'//TRIM(clname))
	1286	CALL iom_update_file_name(TRIM(clname)//cl1)
[1725]	1287	END DO
	1288	END DO
	1289	END DO
	1290
	1291	END SUBROUTINE set_mooring
	1292
[3940]	1293
	1294	SUBROUTINE iom_update_file_name( cdid )
	1295	!!----------------------------------------------------------------------
	1296	!! * ROUTINE iom_update_file_name *
	1297	!!
	1298	!! ** Purpose :
	1299	!!
	1300	!!----------------------------------------------------------------------
	1301	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1302	!
	1303	CHARACTER(LEN=256) :: clname
	1304	CHARACTER(LEN=20) :: clfreq
	1305	CHARACTER(LEN=20) :: cldate
	1306	INTEGER :: idx
	1307	INTEGER :: jn
	1308	INTEGER :: itrlen
	1309	INTEGER :: iyear, imonth, iday, isec
	1310	REAL(wp) :: zsec
	1311	LOGICAL :: llexist
	1312	!!----------------------------------------------------------------------
	1313
	1314	DO jn = 1,2
	1315
	1316	IF( jn == 1 ) CALL iom_get_file_attr( cdid, name = clname, output_freq = clfreq )
	1317	IF( jn == 2 ) CALL iom_get_file_attr( cdid, name_suffix = clname )
	1318
	1319	IF ( TRIM(clname) /= '' ) THEN
	1320
	1321	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	1322	DO WHILE ( idx /= 0 )
	1323	clname = clname(1:idx-1)//TRIM(cexper)//clname(idx+9:LEN_TRIM(clname))
	1324	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	1325	END DO
	1326
	1327	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
	1328	DO WHILE ( idx /= 0 )
	1329	IF ( TRIM(clfreq) /= '' ) THEN
	1330	itrlen = LEN_TRIM(clfreq)
	1331	IF ( clfreq(itrlen-1:itrlen) == 'mo' ) clfreq = clfreq(1:itrlen-1)
	1332	clname = clname(1:idx-1)//TRIM(clfreq)//clname(idx+6:LEN_TRIM(clname))
	1333	ELSE
	1334	CALL ctl_stop('error in the name of file id '//TRIM(cdid), &
	1335	& ' attribute output_freq is undefined -> cannot replace @freq@ in '//TRIM(clname) )
	1336	ENDIF
	1337	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
	1338	END DO
	1339
	1340	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	1341	DO WHILE ( idx /= 0 )
	1342	cldate = iom_sdate( fjulday - rdttra(1) / rday )
	1343	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+11:LEN_TRIM(clname))
	1344	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	1345	END DO
	1346
	1347	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	1348	DO WHILE ( idx /= 0 )
	1349	cldate = iom_sdate( fjulday - rdttra(1) / rday, ldfull = .TRUE. )
	1350	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+15:LEN_TRIM(clname))
	1351	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	1352	END DO
	1353
	1354	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	1355	DO WHILE ( idx /= 0 )
	1356	cldate = iom_sdate( fjulday + rdttra(1) / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE. )
	1357	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+9:LEN_TRIM(clname))
	1358	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	1359	END DO
	1360
	1361	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	1362	DO WHILE ( idx /= 0 )
	1363	cldate = iom_sdate( fjulday + rdttra(1) / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE., ldfull = .TRUE. )
	1364	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+13:LEN_TRIM(clname))
	1365	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	1366	END DO
	1367
	1368	IF( jn == 1 ) CALL iom_set_file_attr( cdid, name = clname )
	1369	IF( jn == 2 ) CALL iom_set_file_attr( cdid, name_suffix = clname )
	1370
	1371	ENDIF
	1372
	1373	END DO
	1374
	1375	END SUBROUTINE iom_update_file_name
	1376
	1377
	1378	FUNCTION iom_sdate( pjday, ld24, ldfull )
	1379	!!----------------------------------------------------------------------
	1380	!! * ROUTINE iom_sdate *
	1381	!!
	1382	!! ** Purpose : send back the date corresponding to the given julian day
	1383	!!
	1384	!!----------------------------------------------------------------------
	1385	REAL(wp), INTENT(in ) :: pjday ! julian day
	1386	LOGICAL , INTENT(in ), OPTIONAL :: ld24 ! true to force 24:00 instead of 00:00
	1387	LOGICAL , INTENT(in ), OPTIONAL :: ldfull ! true to get the compleate date: yyyymmdd_hh:mm:ss
	1388	!
	1389	CHARACTER(LEN=20) :: iom_sdate
	1390	CHARACTER(LEN=50) :: clfmt ! format used to write the date
	1391	INTEGER :: iyear, imonth, iday, ihour, iminute, isec
	1392	REAL(wp) :: zsec
	1393	LOGICAL :: ll24, llfull
	1394	!
	1395	IF( PRESENT(ld24) ) THEN ; ll24 = ld24
	1396	ELSE ; ll24 = .FALSE.
	1397	ENDIF
	1398
	1399	IF( PRESENT(ldfull) ) THEN ; llfull = ldfull
	1400	ELSE ; llfull = .FALSE.
	1401	ENDIF
	1402
	1403	CALL ju2ymds( pjday, iyear, imonth, iday, zsec )
	1404	isec = NINT(zsec)
	1405
	1406	IF ( ll24 .AND. isec == 0 ) THEN ! 00:00 of the next day -> move to 24:00 of the current day
	1407	CALL ju2ymds( pjday - 1., iyear, imonth, iday, zsec )
	1408	isec = 86400
	1409	ENDIF
	1410
	1411	IF( iyear < 10000 ) THEN ; clfmt = "i4.4,2i2.2" ! format used to write the date
	1412	ELSE ; WRITE(clfmt, "('i',i1,',2i2.2')") INT(LOG10(REAL(iyear,wp))) + 1
	1413	ENDIF
	1414
	1415	IF( llfull ) THEN
	1416	clfmt = TRIM(clfmt)//",'_',i2.2,':',i2.2,':',i2.2"
	1417	ihour = isec / 3600
	1418	isec = MOD(isec, 3600)
	1419	iminute = isec / 60
	1420	isec = MOD(isec, 60)
	1421	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday, ihour, iminute, isec ! date of the end of run
	1422	ELSE
	1423	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday ! date of the end of run
	1424	ENDIF
	1425
	1426	END FUNCTION iom_sdate
	1427
[1359]	1428	#else
	1429
	1430	SUBROUTINE iom_setkt( kt )
	1431	INTEGER, INTENT(in ):: kt
[1520]	1432	IF( .FALSE. ) WRITE(numout,*) kt ! useless test to avoid compilation warnings
[1359]	1433	END SUBROUTINE iom_setkt
	1434
	1435	#endif
[3695]	1436
[544]	1437	!!======================================================================
	1438	END MODULE iom

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