[5028] | 1 | #!/bin/bash |
---|
| 2 | #! |
---|
| 3 | # @ shell = /usr/bin/ksh |
---|
| 4 | # @ job_name = MPI_config |
---|
| 5 | # @ output = out.$(job_name).$(jobid) |
---|
| 6 | # @ error = err.$(job_name).$(jobid) |
---|
| 7 | # @ job_type = parallel |
---|
| 8 | # @ total_tasks = NPROCS |
---|
| 9 | # @ wall_clock_limit = 0:30:00 |
---|
| 10 | # @ resources = ConsumableMemory(1562mb) |
---|
| 11 | # @ class = parallel |
---|
| 12 | # @ node_usage = shared |
---|
| 13 | # @ notification = error |
---|
| 14 | # @ task_affinity = core |
---|
| 15 | # @ queue |
---|
| 16 | |
---|
| 17 | ulimit -c unlimited |
---|
| 18 | ulimit -s unlimited |
---|
| 19 | # |
---|
| 20 | # Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these |
---|
| 21 | # (via sed operating on this template job file). |
---|
| 22 | # |
---|
| 23 | OCEANCORES=NPROCS |
---|
| 24 | export SETTE_DIR=DEF_SETTE_DIR |
---|
| 25 | |
---|
| 26 | ############################################################### |
---|
| 27 | # |
---|
| 28 | # set up mpp computing environment |
---|
| 29 | # |
---|
| 30 | # Local settings for machine IBM Power7 (hpc2e at UK Met Office) |
---|
| 31 | # |
---|
| 32 | export MPIRUN="poe -pgmodel $MP_PGMMODEL -n $OCEANCORES -cmdfile" |
---|
| 33 | |
---|
| 34 | # |
---|
| 35 | # load sette functions (only post_test_tidyup needed) |
---|
| 36 | # |
---|
| 37 | . ${SETTE_DIR}/all_functions.sh |
---|
| 38 | |
---|
| 39 | # Don't remove neither change the following comment line |
---|
| 40 | # BODY |
---|
| 41 | |
---|
| 42 | |
---|
| 43 | # |
---|
| 44 | # These variables are needed by post_test_tidyup function in all_functions.sh |
---|
| 45 | # |
---|
| 46 | export EXE_DIR=DEF_EXE_DIR |
---|
| 47 | export INPUT_DIR=DEF_INPUT_DIR |
---|
| 48 | export CONFIG_DIR=DEF_CONFIG_DIR |
---|
| 49 | export NEMO_VALIDATION_DIR=DEF_NEMO_VALIDATION |
---|
| 50 | export NEW_CONF=DEF_NEW_CONF |
---|
| 51 | export CMP_NAM=DEF_CMP_NAM |
---|
| 52 | export TEST_NAME=DEF_TEST_NAME |
---|
| 53 | # |
---|
| 54 | # end of set up |
---|
| 55 | |
---|
| 56 | |
---|
| 57 | ############################################################### |
---|
| 58 | # |
---|
| 59 | # change to the working directory |
---|
| 60 | # |
---|
| 61 | cd ${EXE_DIR} |
---|
| 62 | |
---|
| 63 | echo Running on host `hostname` |
---|
| 64 | echo Time is `date` |
---|
| 65 | echo Directory is `pwd` |
---|
| 66 | # |
---|
| 67 | # Run the parallel MPI executable |
---|
| 68 | # |
---|
| 69 | if [ MPI_FLAG == "yes" ]; then |
---|
| 70 | n=1 |
---|
| 71 | echo "./opa" > ./alltasks |
---|
| 72 | while [ $n -lt $OCEANCORES ] |
---|
| 73 | do |
---|
| 74 | echo "./opa" >> ./alltasks |
---|
| 75 | n=$(( $n + 1 )) |
---|
| 76 | done |
---|
| 77 | time ${MPIRUN} ./alltasks |
---|
| 78 | else |
---|
| 79 | time ./opa |
---|
| 80 | fi |
---|
| 81 | |
---|
| 82 | |
---|
| 83 | # |
---|
| 84 | post_test_tidyup |
---|
| 85 | |
---|
| 86 | # END_BODY |
---|
| 87 | # Don't remove neither change the previous comment line |
---|
| 88 | |
---|
| 89 | exit |
---|