[3533] | 1 | #!/bin/bash |
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| 2 | #MSUB -T 3600 # elapsed time limit in seconds (60 minutes) |
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| 3 | #MSUB -r SETTE_JOB # Job name |
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| 4 | #MSUB -o sette.jobid_%I.txt # standard output |
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| 5 | #MSUB -e sette.jobid_%I.txt # standard error |
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| 6 | |
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| 7 | #====== Thin nodes (1 node = 2 * 8 procs) : |
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| 8 | #MSUB -n NPROCS # Total number of mpi task to use |
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| 9 | #### #MSUB -N 2 # number of nodes to use |
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[5407] | 10 | #MSUB -ra2286 # project name |
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[3533] | 11 | #MSUB -q standard # (queue name) only for thin nodes |
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| 12 | ########################################################################## |
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| 13 | # |
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| 14 | # Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these |
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| 15 | # (via sed operating on this template job file). |
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| 16 | # |
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| 17 | OCEANCORES=NPROCS |
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| 18 | export SETTE_DIR=DEF_SETTE_DIR |
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| 19 | # |
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| 20 | # set up mpp computing environment |
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| 21 | # |
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| 22 | # Local settings for machine BULL (TITANE at CCRT France) |
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| 23 | # |
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[4147] | 24 | export MPIRUN="mpirun -np $OCEANCORES" |
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[3533] | 25 | |
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| 26 | # |
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| 27 | # load sette functions (only post_test_tidyup needed) |
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| 28 | # |
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| 29 | . ${SETTE_DIR}/all_functions.sh |
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| 30 | # |
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| 31 | |
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| 32 | # modules to load |
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[4147] | 33 | module unload netcdf |
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| 34 | module unload hdf5 |
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[5407] | 35 | module load netcdf/4.3.3.1_hdf5_parallel |
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| 36 | module load hdf5/1.8.12_parallel |
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[3533] | 37 | |
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| 38 | # Don't remove neither change the following line |
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| 39 | # BODY |
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| 40 | |
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| 41 | # |
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| 42 | # These variables are needed by post_test_tidyup function in all_functions.sh |
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| 43 | # |
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| 44 | export EXE_DIR=DEF_EXE_DIR |
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| 45 | export INPUT_DIR=DEF_INPUT_DIR |
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| 46 | export CONFIG_DIR=DEF_CONFIG_DIR |
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| 47 | export NEMO_VALIDATION_DIR=DEF_NEMO_VALIDATION |
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| 48 | export NEW_CONF=DEF_NEW_CONF |
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| 49 | export CMP_NAM=DEF_CMP_NAM |
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| 50 | export TEST_NAME=DEF_TEST_NAME |
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| 51 | # |
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| 52 | # end of set up |
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| 53 | ############################################################### |
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| 54 | # |
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| 55 | # change to the working directory |
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| 56 | # |
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| 57 | cd ${EXE_DIR} |
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| 58 | |
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| 59 | echo Running on host `hostname` |
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| 60 | echo Time is `date` |
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| 61 | echo Directory is `pwd` |
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| 62 | # |
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| 63 | # Run the parallel MPI executable |
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| 64 | # |
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| 65 | echo "Running time ${MPIRUN} ./opa" |
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| 66 | # |
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| 67 | if [ MPI_FLAG == "yes" ]; then |
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| 68 | time ${MPIRUN} ./opa |
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| 69 | else |
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| 70 | time ./opa |
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| 71 | fi |
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| 72 | |
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| 73 | # |
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| 74 | post_test_tidyup |
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| 75 | |
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| 76 | # END_BODY |
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| 77 | # Don't remove neither change the previous line |
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| 78 | |
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| 79 | |
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| 80 | exit |
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| 81 | |
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