[3210] | 1 | #!/bin/bash |
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| 2 | # |
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[5407] | 3 | # rsync -av NEMO/ NEMO_no_wrkarrays/ |
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| 4 | # cd NEMO_no_wrkarrays/ |
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| 5 | # ../TOOLS/MISCELLANEOUS/rewrite_nemo.sh |
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| 6 | # cd ../CONFIG |
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| 7 | # ./makenemo -n ORCA2_LIM3 -s NEMO_no_wrkarrays |
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| 8 | # |
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[3210] | 9 | set -u |
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| 10 | #set -xv |
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| 11 | # |
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[5407] | 12 | # for on each file containing a call to work alloc |
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| 13 | for i in $( grep -iRl "^[^\!]*call *wrk_alloc *(" * | grep "90$" ) |
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[3210] | 14 | do |
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| 15 | # create a temporary file that will be easier to process... |
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| 16 | sed -e "s/dimension/DIMENSION/" -e "s/pointer/POINTER/" $i > tmp$$ |
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| 17 | # replace "dimension(...), pointer" to "pointer, dimension(...)" |
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| 18 | sed -e "s/, *DIMENSION *(\([^)]*\)) *, *POINTER/, POINTER, DIMENSION(\1)/" tmp$$ > tmp2$$ |
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| 19 | mv tmp2$$ tmp$$ |
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| 20 | # remove all comments in $i |
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| 21 | sed -e "s/\!.*//" tmp$$ > tmp2$$ |
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| 22 | mv tmp2$$ tmp$$ |
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| 23 | # numbers of the lines defining the beginning and the end of each subroutine or functions |
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| 24 | n1=$( egrep -ic "(^ *subroutine *[0-9a-zA-Z_]|function *[0-9a-zA-Z_][0-9a-zA-Z_]* *\(.*\))" tmp$$ ) |
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| 25 | n2=$( egrep -ic "(^ *end *subroutine|^ *end *function)" tmp$$ ) |
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| 26 | if [ $n1 -ne $n2 ] |
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| 27 | then |
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| 28 | echo "error with the definition of subroutine/function blocks in $i" |
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| 29 | exit |
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| 30 | fi |
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| 31 | linesbegin=$( egrep -in "(^ *subroutine *[0-9a-zA-Z_]|function *[0-9a-zA-Z_][0-9a-zA-Z_]* *\(.*\))" tmp$$ | sed -e "s/:.*//" ) |
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| 32 | linesend=$( egrep -in "(^ *end *subroutine|^ *end *function)" tmp$$ | sed -e "s/:.*//" | sort -rn ) |
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| 33 | # |
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| 34 | # number of the lines containing wrk_alloc |
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[5407] | 35 | cnt=$( grep -ci "^[^\!]*call *wrk_alloc *(" tmp$$ ) |
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[3210] | 36 | # for each of these lines |
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| 37 | ll=1 |
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| 38 | while [ $ll -le $cnt ] |
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| 39 | do |
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| 40 | # get the line with its number |
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[5407] | 41 | line=$( grep -in "^[^\!]*call *wrk_alloc *(" tmp$$ | sed -n ${ll}p | sed -e "s/\!.*//" ) |
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[3210] | 42 | # get its number |
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| 43 | lline=$( echo $line | sed -e "s/:.*//" ) |
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| 44 | # keep only the arument of wrk_alloc between () |
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[5407] | 45 | line=$( echo $line | sed -e "s/^.*[cC][aA][lL][lL] *[wW][rR][kK]_[aA][lL][lL][oO][cC]//" | sed -e "s/[^(]*\((.*)\).*/\1/" | sed -e "s/, *k[ijkl]start *=[^,]*,/,/" | sed -e "s/, *k[ijkl]start *=.*)/ )/" ) |
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[3210] | 46 | # find in which subroutine or function is located this call to wrk_alloc: l1 beginning l2: end |
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| 47 | for lll in $linesbegin |
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| 48 | do |
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| 49 | [ $lline -gt $lll ] && l1=$lll |
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| 50 | done |
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| 51 | for lll in $linesend |
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| 52 | do |
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| 53 | [ $lline -lt $lll ] && l2=$lll |
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| 54 | done |
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| 55 | if [ $l2 -le $l1 ] |
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| 56 | then |
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| 57 | echo "error in $i in the indentification subroutine/function block containing line $lline" |
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| 58 | exit |
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| 59 | fi |
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| 60 | # get the last argument of the call to wrk_alloc (between the last "," and ")" |
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| 61 | lw=$( echo $line | sed -e "s/.*,\(.*\)).*/\1/" | sed -e "s/ *//g" ) |
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| 62 | # get the line containing the definition of this argument and from it get the number of dimension of the argument |
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| 63 | tst=$( sed -n ${l1},${l2}p tmp$$ | grep -i "POINTER *, *DIMENSION *(.*) *::.*"${lw} | egrep -ic "[^0-9a-zA-Z_]("${lw}" *$|"${lw}" *,)" ) |
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| 64 | if [ $tst -ne 1 ] |
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| 65 | then |
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| 66 | echo "error with ${lw} definition in $i" |
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| 67 | exit |
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| 68 | fi |
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| 69 | dimsz=$( sed -n ${l1},${l2}p tmp$$ | grep -i "POINTER *, *DIMENSION *(.*) *::.*"${lw} | egrep -i "[^0-9a-zA-Z_]("${lw}" *$|"${lw}" *,)" | sed -e "s/.*POINTER *, *DIMENSION *(\(.*\)) *::.*/\1/" | sed -e "s/ //g" | wc -c ) |
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| 70 | dimsz=$(( $dimsz / 2 )) |
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| 71 | # get the number of variables concerned by the call to wrk_alloc (keep anly the , and count them) |
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| 72 | nvar=$( echo $line | sed -e "s/[^,]//g" | wc -c ) |
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| 73 | nvar=$(( $nvar - $dimsz )) |
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| 74 | # get the définition of the size of the dimensions from the call to wrk_alloc |
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| 75 | case $dimsz in |
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| 76 | 1) dim=$( echo $line | sed -e "s/( *\([^,]*\),.*)/\1/" | sed -e "s/ //g" ) ;; # keep between ( and the 1st , |
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| 77 | 2) dim=$( echo $line | sed -e "s/( *\([^,]*,[^,]*\),.*)/\1/" | sed -e "s/ //g" ) ;; # keep between ( and the 2nd , |
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| 78 | 3) dim=$( echo $line | sed -e "s/( *\([^,]*,[^,]*,[^,]*\),.*)/\1/" | sed -e "s/ //g" ) ;; # keep between ( and the 3rd , |
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| 79 | 4) dim=$( echo $line | sed -e "s/( *\([^,]*,[^,]*,[^,]*,[^,]*\),.*)/\1/" | sed -e "s/ //g" ) ;; # keep between ( and the 4th , |
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| 80 | *) echo "error with the number of dimensions of $lw in $i"; exit ;; |
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| 81 | esac |
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| 82 | # for each variable, change its definition... |
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| 83 | nn=1 |
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| 84 | var=$lw # start from the last argument |
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| 85 | while [ $nn -le $nvar ] |
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| 86 | do |
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| 87 | # get the line where this variable is defined. |
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| 88 | tst=$( sed -n ${l1},${l2}p tmp$$ | grep -ni "POINTER *, *DIMENSION *(.*) *::.*"${var} | egrep -ic "[^0-9a-zA-Z_]("${var}" *$|"${var}" *,)" ) |
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| 89 | if [ $tst -ne 1 ] |
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| 90 | then |
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| 91 | echo "error with ${lw} definition in $i" |
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| 92 | exit |
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| 93 | fi |
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| 94 | # get the line number where the variable is defined |
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| 95 | lvar=$( sed -n ${l1},${l2}p tmp$$ | grep -ni "POINTER *, *DIMENSION *(.*) *::.*"${var} | egrep -i "[^0-9a-zA-Z_]("${var}" *$|"${var}" *,)" | sed -e "s/:.*//" ) |
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| 96 | lvar=$(( $lvar + $l1 - 1 )) |
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| 97 | # get the dimension definition and compare it to ${dim} |
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| 98 | dim2=$( sed -n -e "${lvar}p" $i | sed -e "s/dimension/DIMENSION/" -e "s/\!.*//" | sed -e "s/.*, *DIMENSION *(\(.*\)).*/\1/" | sed -e "s/ //g" ) |
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| 99 | if [ $( echo $dim2 | wc -c ) -ne $(( $dimsz * 2 )) ] |
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| 100 | then |
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| 101 | if [ "$dim2" != "$dim" ] |
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| 102 | then |
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| 103 | echo "problem in $i in the defininition of variable $var: its size is $dim but we have $dim2" |
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| 104 | sed -n -e "${lvar}p" $i |
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| 105 | exit |
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| 106 | fi |
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| 107 | fi |
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| 108 | # remove pointer |
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| 109 | sed -e "${lvar}s/pointer/POINTER/" $i | sed -e "${lvar}s/, *POINTER *,/,/" | sed -e "${lvar}s/, *POINTER */ /" > tmp2$$ |
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| 110 | mv tmp2$$ $i |
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| 111 | # redefine the dimensions |
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| 112 | case $dimsz in |
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| 113 | 1) sed -e "${lvar}s/\(DIMENSION *(\) *: *)/\1${dim})/" $i > tmp2$$ ;; |
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| 114 | 2) sed -e "${lvar}s/\(DIMENSION *(\) *: *, *: *)/\1${dim})/" $i > tmp2$$ ;; |
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| 115 | 3) sed -e "${lvar}s/\(DIMENSION *(\) *: *, *: *, *: *)/\1${dim})/" $i > tmp2$$ ;; |
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| 116 | 4) sed -e "${lvar}s/\(DIMENSION *(\) *: *, *: *, *: *, *: *)/\1${dim})/" $i > tmp2$$ ;; |
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| 117 | esac |
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| 118 | mv tmp2$$ $i |
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| 119 | |
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| 120 | # define the next variable (previous argument) |
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| 121 | var=$( echo $line | sed -e "s/.*,\(.*\), *[^0-9a-zA-Z_]*${var}[^0-9a-zA-Z_]*[,)].*/\1/" | sed -e "s/ *//g" ) |
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| 122 | nn=$(( $nn + 1 )) |
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| 123 | done |
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| 124 | |
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| 125 | ll=$(( $ll + 1 )) |
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| 126 | done |
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| 127 | #delete wrk_alloc line |
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| 128 | sed -e "/call *wrk_alloc *(/d" -e "/CALL *wrk_alloc *(/d" \ |
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| 129 | -e "/call *wrk_dealloc *(/d" -e "/CALL *wrk_dealloc *(/d" \ |
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| 130 | -e "/USE wrk_nemo/d" -e "/use wrk_nemo/d" $i > tmp$$ |
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| 131 | mv tmp$$ $i |
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| 132 | |
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| 133 | echo $i done |
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| 134 | done |
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| 135 | # |
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| 136 | # some specific changes... |
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| 137 | # |
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| 138 | # OPA_SRC/SBC/albedo.F90 |
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[5407] | 139 | sed -e "s/DIMENSION(jpi,jpj,ijpl/DIMENSION(jpi,jpj,SIZE(pt_ice,3)/" OPA_SRC/SBC/albedo.F90 > tmp$$ |
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[3210] | 140 | mv tmp$$ OPA_SRC/SBC/albedo.F90 |
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[5407] | 141 | # see result of |
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| 142 | # grep -i "wrk_alloc" $( find . -name "*90" ) | grep "=" |
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| 143 | # |
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[3210] | 144 | # LIM_SRC_2/limrhg_2.F90 |
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[5407] | 145 | #./LIM_SRC_2/limrhg_2.F90: CALL wrk_alloc( jpi,jpj+2, zu0, zv0, zu_n, zv_n, zu_a, zv_a, zviszeta, zviseta, kjstart = 0 ) |
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| 146 | #./LIM_SRC_2/limrhg_2.F90: CALL wrk_alloc( jpi,jpj+2, zzfrld, zztms, zi1, zi2, zmasst, zpresh, kjstart = 0 ) |
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| 147 | sed -e "s/DIMENSION(jpi,jpj+2/DIMENSION(jpi,0:jpj+1/" LIM_SRC_2/limrhg_2.F90 > tmp$$ |
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[3210] | 148 | mv tmp$$ LIM_SRC_2/limrhg_2.F90 |
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[5407] | 149 | |
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[3210] | 150 | # LIM_SRC_3/limitd_me.F90 |
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[5407] | 151 | #./LIM_SRC_3/limitd_me.F90: CALL wrk_alloc( jpi,jpj,jpl+2, Gsum, kkstart = -1 ) |
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[3210] | 152 | sed -e "s/DIMENSION(jpi,jpj,jpl+2)/DIMENSION(jpi,jpj,-1:jpl)/" LIM_SRC_3/limitd_me.F90 > tmp$$ |
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| 153 | mv tmp$$ LIM_SRC_3/limitd_me.F90 |
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[5407] | 154 | |
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[3210] | 155 | # LIM_SRC_3/limitd_th.F90 |
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[5407] | 156 | #./LIM_SRC_3/limitd_th.F90: CALL wrk_alloc( jpi,jpj,jpl+1, zhbnew, kkstart = 0 ) |
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[3210] | 157 | sed -e "s/DIMENSION(jpi,jpj,jpl+1)/DIMENSION(jpi,jpj,0:jpl)/" LIM_SRC_3/limitd_th.F90 > tmp$$ |
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| 158 | mv tmp$$ LIM_SRC_3/limitd_th.F90 |
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[5407] | 159 | |
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[3210] | 160 | # LIM_SRC_3/limthd_dif.F90 |
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[5407] | 161 | #./LIM_SRC_3/limthd_dif.F90: CALL wrk_alloc( jpij,nlay_i+1, ztcond_i, zradtr_i, zradab_i, zkappa_i, ztib, zeta_i, ztitemp, z_i, zspeche_i, kjstart=0 ) |
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| 162 | #./LIM_SRC_3/limthd_dif.F90: CALL wrk_alloc( jpij,nlay_s+1, zradtr_s, zradab_s, zkappa_s, ztsb, zeta_s, ztstemp, z_s, kjstart=0 ) |
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[3210] | 163 | sed -e "s/DIMENSION(kiut,nlay_i+1)/DIMENSION(kiut,0:nlay_i)/" \ |
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| 164 | -e "s/DIMENSION(kiut,nlay_s+1)/DIMENSION(kiut,0:nlay_s)/" LIM_SRC_3/limthd_dif.F90 > tmp$$ |
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| 165 | mv tmp$$ LIM_SRC_3/limthd_dif.F90 |
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[5407] | 166 | |
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[3210] | 167 | # LIM_SRC_3/limthd_ent.F90 |
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[5407] | 168 | #./LIM_SRC_3/limthd_ent.F90: CALL wrk_alloc( jpij, nlay_i+3, zqh_cum0, zh_cum0, kjstart = 0 ) |
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| 169 | #./LIM_SRC_3/limthd_ent.F90: CALL wrk_alloc( jpij, nlay_i+1, zqh_cum1, zh_cum1, kjstart = 0 ) |
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| 170 | sed -e "s/DIMENSION(jpij,nlay_i+3)/DIMENSION(jpij,0:nlay_i+2)/" \ |
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| 171 | -e "s/DIMENSION(jpij,nlay_i+1)/DIMENSION(jpij,0:nlay_i)/" LIM_SRC_3/limthd_ent.F90 > tmp$$ |
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[3210] | 172 | mv tmp$$ LIM_SRC_3/limthd_ent.F90 |
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[5407] | 173 | |
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[3210] | 174 | # OPA_SRC/DYN/divcur.F90 |
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[5407] | 175 | #./OPA_SRC/DYN/divcur.F90: CALL wrk_alloc( jpi+4, jpj , zwv, kjstart = -1 ) |
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[3210] | 176 | sed -e "s/DIMENSION(jpi+4,jpj)/DIMENSION(-1:jpi+2,jpj)/" OPA_SRC/DYN/divcur.F90 > tmp$$ |
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| 177 | mv tmp$$ OPA_SRC/DYN/divcur.F90 |
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[5407] | 178 | |
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[3210] | 179 | # OPA_SRC/LDF/ldfslp.F90 |
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[5407] | 180 | #./OPA_SRC/LDF/ldfslp.F90: CALL wrk_alloc( jpi,jpj,jpk,2, zdxrho , zdyrho, zdzrho, klstart = 0 ) |
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| 181 | #./OPA_SRC/LDF/ldfslp.F90: CALL wrk_alloc( jpi,jpj, 2,2, zti_mlb, ztj_mlb, kkstart = 0, klstart = 0 ) |
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[3210] | 182 | sed -e "s/DIMENSION(jpi,jpj,jpk,2)/DIMENSION(jpi,jpj,jpk,0:1)/" \ |
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| 183 | -e "s/DIMENSION(jpi,jpj,2,2)/DIMENSION(jpi,jpj,0:1,0:1)/" OPA_SRC/LDF/ldfslp.F90 > tmp$$ |
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| 184 | mv tmp$$ OPA_SRC/LDF/ldfslp.F90 |
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| 185 | # OPA_SRC/ZDF/zdfkpp.F90 |
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[5407] | 186 | #./OPA_SRC/ZDF/zdfkpp.F90: CALL wrk_alloc( jpi,3, zmoek, kjstart = 0 ) |
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[3210] | 187 | sed -e "s/DIMENSION(jpi,3) *::* zmoek/DIMENSION(jpi,0:2) :: zmoek/" OPA_SRC/ZDF/zdfkpp.F90 > tmp$$ |
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| 188 | mv tmp$$ OPA_SRC/ZDF/zdfkpp.F90 |
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| 189 | |
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[5407] | 190 | # links |
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| 191 | # see result of |
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| 192 | # find . -type l |
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| 193 | # |
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| 194 | # ./LIM_SRC_2/limrhg.F90 |
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[3210] | 195 | cd LIM_SRC_2 |
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| 196 | ln -sf ../LIM_SRC_3/limrhg.F90 . |
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[5407] | 197 | cd .. |
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| 198 | |
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| 199 | # ./OOO_SRC/dtadyn.F90 |
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| 200 | cd OOO_SRC |
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| 201 | ln -sf ../OFF_SRC/dtadyn.F90 . |
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| 202 | cd .. |
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| 203 | |
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| 204 | # ./OOO_SRC/obs_fbm.F90 |
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| 205 | cd OOO_SRC |
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| 206 | ln -sf ../OPA_SRC/OBS/obs_fbm.F90 . |
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| 207 | cd .. |
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