1 | # $Id$ |
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2 | set -xv |
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3 | |
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4 | CONF=GYRE_LOBSTER |
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5 | # Variables changed by lance_batch.ksh script |
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6 | RUN=xxx |
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7 | NB_PROCS=xxx |
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8 | LAUNCH=xxx |
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9 | LEXE=xxx |
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10 | CPERF=xxx |
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11 | D_INPUT=xxx |
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12 | D_GET=xxx |
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13 | REF_TAG=xxx |
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14 | TSYMB=xxx |
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15 | |
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16 | # Variables changed by ins_valid.ksh script |
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17 | MAINDIR=/Users/ctlod/WORK/AZE |
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18 | WORK=/Users/ctlod/WORK/AZE/modipsl/config |
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19 | REF_OD=/Volumes/FENUA/ORCA2_LIM_nemo_v2_IO |
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20 | |
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21 | # Arguments |
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22 | # type = 'long' or '1_short' or '2_short' |
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23 | type=$1 |
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24 | |
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25 | case ${type} in |
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26 | 'long' ) |
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27 | DIROUT='LONG' |
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28 | ITERATIONS=360 ;; |
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29 | |
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30 | '1_short' ) |
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31 | DIROUT='1_SHORT' |
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32 | ITERATIONS=180 ;; |
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33 | |
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34 | '2_short' ) |
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35 | DIROUT='2_SHORT' |
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36 | ITERATIONS=180 ;; |
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37 | |
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38 | 'gtime' ) |
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39 | DIROUT='GTIME' |
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40 | ITERATIONS=4320 ;; |
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41 | esac |
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42 | |
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43 | # Working directory |
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44 | cd ${TMPDIR} |
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45 | #-T- osxxlf cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/RUN |
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46 | #-T- osxxlf zback=$? |
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47 | #-T- osxxlf if [ ${zback} = 0 ] ; then rm -rf namelist* *.nc memory* solver.stat ocean.output* mpp.output* mono.output* ; fi |
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48 | |
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49 | ############################################################## |
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50 | ############################################################## |
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51 | ############################################################## |
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52 | ### Input files |
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53 | ############################################################## |
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54 | ############################################################## |
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55 | ############################################################## |
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56 | # Ocean namelist |
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57 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist . |
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58 | |
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59 | # Local function to find namelists parameters |
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60 | supergrep () { |
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61 | grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" |
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62 | } |
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63 | |
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64 | # namelist modifications |
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65 | PAT_NIT000=$( supergrep nit000 namelist ) |
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66 | PAT_NITEND=$( supergrep nitend namelist ) |
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67 | PAT_NSTOCK=$( supergrep nstock namelist ) |
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68 | PAT_NWRITE=$( supergrep nwrite namelist ) |
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69 | PAT_NRSTDT=$( supergrep nrstdt namelist ) |
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70 | PAT_NBITCM=$( supergrep nbit_cmp namelist ) |
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71 | PAT_NSOLVV=$( supergrep nsolv namelist ) |
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72 | PAT_RESTAR=$( supergrep ln_rstart namelist ) |
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73 | PAT_RESMLD=$( supergrep ln_trdmld_restart namelist ) |
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74 | |
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75 | sed -e "s%$PAT_RESTAR% ln_rstart = .false.%" \ |
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76 | -e "s%$PAT_NIT000% nit000 = 1 %" \ |
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77 | -e "s%$PAT_NITEND% nitend = ${ITERATIONS} %" \ |
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78 | -e "s%$PAT_NSTOCK% nstock = ${ITERATIONS} %" \ |
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79 | -e "s%$PAT_NWRITE% nwrite = 60 %" \ |
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80 | -e "s%$PAT_NRSTDT% nrstdt = 0 %" \ |
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81 | -e "s%$PAT_NBITCM% nbit_cmp = 1%" \ |
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82 | -e "s%$PAT_NSOLVV% nsolv = 2%" \ |
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83 | -e "s%$PAT_RESMLD% ln_trdmld_restart = .false.%" namelist > nam.tmp |
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84 | |
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85 | mv nam.tmp namelist |
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86 | |
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87 | # Biogeochemistry namelists |
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88 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist_top namelist_top_f90 |
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89 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist_lobster namelist_lobster_f90 |
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90 | |
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91 | # namelist modifications |
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92 | PAT_NWRITRC=$( supergrep nwritetrc namelist_top_f90 ) |
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93 | PAT_NWRITRD=$( supergrep ntrd_trc namelist_top_f90 ) |
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94 | PAT_RESTTRD=$( supergrep ln_trdmld_trc_restart namelist_top_f90 ) |
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95 | PAT_LTRCRAD=$( supergrep ln_trcrad namelist_top_f90 ) |
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96 | |
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97 | sed -e "s%$PAT_NWRITRC% nwritetrc = ${ITERATIONS}%" \ |
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98 | -e "s%$PAT_NWRITRD% ntrd_trc = ${ITERATIONS}%" \ |
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99 | -e "s%$PAT_LTRCRAD% ln_trcrad = .false.%" \ |
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100 | -e "s%$PAT_RESTTRD% ln_trdmld_trc_restart = .false.%" namelist_top_f90 > nam.tmp |
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101 | |
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102 | mv nam.tmp namelist_top |
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103 | |
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104 | PAT_ADD=$( supergrep nwritedia namelist_lobster_f90 ) |
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105 | sed -e "s%$PAT_ADD% nwritedia = ${ITERATIONS}%" namelist_lobster_f90 > nam.tmp |
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106 | mv nam.tmp namelist_lobster |
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107 | |
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108 | # Analytical forcing |
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109 | |
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110 | # Get restarts files if needed |
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111 | if [ $type = '2_short' ] |
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112 | then |
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113 | if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then |
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114 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart.nc restart.nc |
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115 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld.nc restart_mld.nc |
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116 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_trc.nc restart_trc.nc |
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117 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld_trc.nc restart_mld_trc.nc |
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118 | fi |
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119 | |
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120 | if [ ${RUN} = 'mpi' ] ; then |
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121 | typeset -Z4 i=0 |
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122 | while [ $i -lt $NB_PROCS ] |
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123 | do |
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124 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_${i}.nc restart_${i}.nc |
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125 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld_${i}.nc restart_mld_${i}.nc |
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126 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_trc_${i}.nc restart_trc_${i}.nc |
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127 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld_trc_${i}.nc restart_mld_trc_${i}.nc |
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128 | let i=$i+1 |
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129 | done |
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130 | fi |
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131 | |
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132 | # Ocean namelist modifications |
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133 | PAT_NIT000=$( supergrep nit000 namelist ) |
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134 | PAT_NITEND=$( supergrep nitend namelist ) |
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135 | PAT_NRSTDT=$( supergrep nrstdt namelist ) |
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136 | PAT_RESTAR=$( supergrep ln_rstart namelist ) |
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137 | PAT_RESMLD=$( supergrep ln_trdmld_restart namelist ) |
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138 | ORCA_NIT000=$(( $ITERATIONS + 1 )) |
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139 | ORCA_NITEND=$(( $ITERATIONS*2 )) |
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140 | |
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141 | sed -e "s%$PAT_RESTAR% ln_rstart = .true.%" \ |
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142 | -e "s%$PAT_NIT000% nit000 = $ORCA_NIT000 %" \ |
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143 | -e "s%$PAT_NITEND% nitend = $ORCA_NITEND %" \ |
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144 | -e "s%$PAT_NRSTDT% nrstdt = 2%" \ |
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145 | -e "s%$PAT_RESMLD% ln_trdmld_restart = .true.%" namelist > nam.tmp |
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146 | |
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147 | mv nam.tmp namelist |
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148 | |
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149 | # Biogeochemistry namelist modifications |
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150 | PAT_RESTAR=$( supergrep lrsttr namelist_top ) |
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151 | PAT_RESTRD=$( supergrep ln_trdmld_trc_restart namelist_top ) |
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152 | |
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153 | sed -e "s%$PAT_RESTAR% lrsttr = .true. %" \ |
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154 | -e "s%$PAT_RESTRD% ln_trdmld_trc_restart = .true.%" namelist_top > nam.tmp |
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155 | |
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156 | mv nam.tmp namelist_top |
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157 | |
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158 | fi |
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159 | |
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160 | ############################################################## |
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161 | ############################################################## |
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162 | ############################################################## |
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163 | ### Launch run |
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164 | ############################################################## |
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165 | ############################################################## |
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166 | ############################################################## |
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167 | |
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168 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_${RUN} opa_${CONF}_${RUN} |
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169 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_memo opa_${CONF}_memo |
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170 | chmod 777 opa_${CONF}_${RUN} |
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171 | chmod 777 opa_${CONF}_memo |
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172 | |
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173 | # |
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174 | # Profiling & Executable memory size |
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175 | #################################### |
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176 | touch memory_size.txt |
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177 | |
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178 | case ${RUN} in |
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179 | 'mon' ) |
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180 | #-T- sx8brodie export F_PROGINF=detail |
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181 | #-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt |
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182 | #-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt ;; |
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183 | #-T- aix6 ;; |
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184 | #-T- ax6_mono echo "Stack memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt |
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185 | #-T- ax6_mono echo "Static memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt ;; |
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186 | #-T- osxxlf echo "Stack memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt |
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187 | #-T- osxxlf echo "Static memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt ;; |
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188 | 'mpi' ) |
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189 | #-T- sx8brodie export MPIPROGINF=detail ;; |
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190 | #-T- aix6 ;; |
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191 | #-T- ax6_mono ;; |
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192 | #-T- osxxlf ;; |
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193 | 'omp' ) |
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194 | #-T- sx8brodie export F_PROGINF=detail |
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195 | #-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} ;; |
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196 | #-T- aix6 ;; |
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197 | #-T- ax6_mono ;; |
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198 | #-T- osxxlf ;; |
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199 | esac |
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200 | # |
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201 | # >>>>>> EXECUTION < < < < |
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202 | ########################## |
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203 | |
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204 | case ${RUN} in |
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205 | 'mon' | 'omp' ) |
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206 | ${CPERF} ./opa_${CONF}_${RUN} ;; |
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207 | 'mpi' ) |
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208 | #-T- sx8brodie ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;; |
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209 | #-T- aix6 ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;; |
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210 | #-T- osxxlf mpd& |
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211 | #-T- osxxlf sleep 5 |
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212 | #-T- osxxlf ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} |
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213 | #-T- osxxlf mpdallexit ;; |
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214 | esac |
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215 | |
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216 | ls -l |
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217 | # |
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218 | |
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219 | ############################################################## |
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220 | ############################################################## |
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221 | ############################################################## |
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222 | ### Save output files |
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223 | ############################################################## |
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224 | ############################################################## |
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225 | ############################################################## |
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226 | case ${RUN} in |
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227 | 'mon' | 'omp' ) |
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228 | liste_files=' *abort* memory* namelist* perfs* solver.stat ocean.output layout* GYRE* restart* mono*' ;; |
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229 | 'mpi' ) |
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230 | liste_files=' *abort* namelist* solver.stat perfs* ocean.output* layout* GYRE* restart* mpp*' ;; |
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231 | esac |
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232 | |
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233 | # Ensure that all files saved are coming from the current run |
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234 | ind=1 |
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235 | for k in $liste_files |
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236 | do |
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237 | echo $k > temp |
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238 | var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) ) |
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239 | if [ ${ind} = 1 -a ${var} = 'perf' ] ; then |
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240 | kc='perf*' |
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241 | rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${kc} |
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242 | ind=0 |
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243 | fi |
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244 | cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/$k |
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245 | done |
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246 | |
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247 | ############################################################## |
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248 | ############################################################## |
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249 | ############################################################## |
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250 | ### Retrieve some reference run files |
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251 | ############################################################## |
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252 | ############################################################## |
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253 | ############################################################## |
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254 | if [ ${REF_TAG} ] |
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255 | then |
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256 | STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT} |
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257 | LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err" |
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258 | for ref_file in ${LFILES} |
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259 | do |
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260 | ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/REF/${ref_file} |
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261 | done |
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262 | fi |
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263 | |
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264 | ############################################################## |
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265 | ############################################################## |
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266 | ############################################################## |
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267 | ### Launch restart job |
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268 | ############################################################## |
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269 | ############################################################## |
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270 | ############################################################## |
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271 | if [ $type = '1_short' ] ; then |
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272 | cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT |
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273 | ${LAUNCH}job_${RUN}_2_short.ksh |
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274 | fi |
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