| 1 | #!/bin/ksh |
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| 2 | # $Id$ |
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| 3 | ###################################################### |
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| 4 | # Original : C. Talandier for NEMO team |
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| 5 | # Contact : nemo_st@locean-ipsl.upmc.fr |
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| 6 | # |
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| 7 | # This script aims to (for each standard configuration) : |
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| 8 | # - I. Take into account specific files changes |
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| 9 | # - ./modipsl/util/ins_make |
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| 10 | # - ./modipsl/config/NAME_CONFIG/AA_make* |
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| 11 | # - ./modipsl/config/NAME_CONFIG/scripts/BB_make.ldef |
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| 12 | # - II. Build configuration's environment & dependencies |
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| 13 | # - ./modipsl/config/NAME_CONFIG/WORK |
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| 14 | # - ./modipsl/config/NAME_CONFIG/MY_SRC |
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| 15 | # - ./modipsl/config/NAME_CONFIG/scripts/BB_make |
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| 16 | # - III. Build results sub-directories in the OUTDIR |
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| 17 | # directory specified by user just below |
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| 18 | # NEMO_VALID/WNAME_CONFIG/ |
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| 19 | # |-- mon --> MONO run |
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| 20 | # | |-- 1_SHORT |
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| 21 | # | |-- 2_SHORT |
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| 22 | # | |-- LONG |
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| 23 | # | `-- GTIME |
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| 24 | # |-- mpi --> MPI run |
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| 25 | # | |-- 1_SHORT |
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| 26 | # | |-- 2_SHORT |
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| 27 | # | |-- LONG |
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| 28 | # | `-- GTIME |
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| 29 | # `-- omp --> Open-MP run |
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| 30 | # |-- 1_SHORT |
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| 31 | # |-- 2_SHORT |
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| 32 | # |-- LONG |
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| 33 | # `-- GTIME |
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| 34 | # |
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| 35 | # - IV. Modify lance_batch.ksh & assessment.ksh scripts |
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| 36 | # - V. Preliminary compilations |
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| 37 | ###################################################### |
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| 38 | |
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| 39 | #set -xv |
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| 40 | |
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| 41 | ########################################################## |
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| 42 | ##### Begin Users modifications |
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| 43 | ########################################################## |
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| 44 | # OUTDIR : working directory from which jobs will be launched |
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| 45 | # & results stored |
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| 46 | # INPUTD : directory where to get ORCA2_LIM_nemo_v2.tar |
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| 47 | # REFDAT : directory where to get results from reference tags |
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| 48 | # DECOMP : total number of processors which will be used |
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| 49 | # MAIL : give your e-mail |
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| 50 | # UAGRIF : one of the standard configurations is based on AGRIF yes/no |
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| 51 | ########################################################## |
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| 52 | OUTDIR=/Users/ctlod/WORK/AZE/modipsl/config |
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| 53 | INPUTD=/u/rech/eee/reee831/IO_NEMO_ORCA2_LIM |
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| 54 | REFDAT=/u/rech/eee/reee831/NEMO_VALIDATION |
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| 55 | DECOMP=8 |
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| 56 | MAIL="ctlod@locean-ipsl.upmc.fr" |
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| 57 | UAGRIF=yes |
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| 58 | ########################################################## |
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| 59 | ##### End Users modifications |
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| 60 | ########################################################## |
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| 61 | |
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| 62 | |
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| 63 | # Standard configurations |
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| 64 | NBCFG=4 |
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| 65 | CONF[0]=ORCA2_LIM |
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| 66 | CONF[1]=GYRE |
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| 67 | CONF[2]=GYRE_LOBSTER |
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| 68 | CONF[3]=ZAGRIF |
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| 69 | LCLDIR=`pwd` |
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| 70 | |
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| 71 | # Use a modified modipsl script: ins_make |
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| 72 | # which allows to build Makefiles of a specific configuration |
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| 73 | # using the following syntax: ins_make -w NAME_CONF |
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| 74 | cp ./MODIPSL_FILES/ins_make ../../../util/. |
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| 75 | |
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| 76 | # Set following variable in AA_make.ldef script |
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| 77 | # - WWDIR = directory where to store results and jobs |
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| 78 | CAR_WORK_tmp=$( grep 'WWDIR=' ./CONFIG_FILES/AA_make.ldef ) |
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| 79 | CAR_WORK=`echo $CAR_WORK_tmp | cut -f 1 -d " " ` |
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| 80 | sed -e "s?${CAR_WORK}?WWDIR=${OUTDIR}?" ./CONFIG_FILES/AA_make.ldef > ./CONFIG_FILES/AA_make.ldef.$$ |
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| 81 | mv ./CONFIG_FILES/AA_make.ldef.$$ ./CONFIG_FILES/AA_make.ldef && rm -f ./CONFIG_FILES/AA_make.ldef.$$ |
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| 82 | |
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| 83 | # Get the current target name |
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| 84 | LOCTARG=`../../../util/w_i_h` |
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| 85 | |
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| 86 | # Loop over each standard configuration |
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| 87 | # ##################################### |
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| 88 | ind=0 |
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| 89 | while [ $ind -lt ${NBCFG} ] |
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| 90 | do |
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| 91 | # I. Take into account specific changes |
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| 92 | # ##################################### |
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| 93 | # Set following variables in job_NAME_CONF.ksh script |
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| 94 | # - MAINDIR = directory where to get namelist input files |
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| 95 | # - WORK = directory where to store results |
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| 96 | # - REF_OD = directory where Are stored results from previous tags |
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| 97 | cd ../../../.. ; NAME_ARCH=$( pwd ) ; |
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| 98 | cd ${LCLDIR} |
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| 99 | echo ${NAME_ARCH} |
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| 100 | CAR_MAIN_tmp=$( grep 'MAINDIR=' ./JOBS/job_${CONF[${ind}]}.ksh ) |
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| 101 | CAR_MAIN=`echo $CAR_MAIN_tmp | cut -f 1 -d " " ` |
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| 102 | CAR_WORK_tmp=$( grep 'WORK=' ./JOBS/job_${CONF[${ind}]}.ksh ) |
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| 103 | CAR_WORK=`echo $CAR_WORK_tmp | cut -f 1 -d " " ` |
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| 104 | CAR_REFO_tmp=$( grep 'REF_OD=' ./JOBS/job_${CONF[${ind}]}.ksh | head -1 ) |
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| 105 | CAR_REFO=`echo $CAR_REFO_tmp | cut -f 1 -d " " ` |
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| 106 | sed -e "s?${CAR_MAIN}?MAINDIR=${NAME_ARCH}?" -e "s?${CAR_WORK}?WORK=${OUTDIR}?" \ |
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| 107 | -e "s?${CAR_REFO}?REF_OD=${REFDAT}?" ./JOBS/job_${CONF[${ind}]}.ksh > ./JOBS/job_tmp.$$ |
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| 108 | mv ./JOBS/job_tmp.$$ ./JOBS/job_${CONF[${ind}]}.ksh && rm -f ./JOBS/job_tmp.$$ |
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| 109 | |
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| 110 | # II. Build configuration environment |
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| 111 | # ################################### |
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| 112 | (cd ../ ; ./use_cfg -n ${CONF[${ind}]} ;) |
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| 113 | echo ' ' |
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| 114 | echo ' >>>>>>>> Configuration directories have been built:' |
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| 115 | echo " ./config/${CONF[${ind}]}/WORK" |
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| 116 | echo " ./config/${CONF[${ind}]}/MY_SRC" |
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| 117 | echo ' ' |
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| 118 | |
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| 119 | cp ./CONFIG_FILES/AA_make* ../../${CONF[${ind}]}/. |
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| 120 | cp ./CONFIG_FILES/BB_make.ldef_${CONF[${ind}]} ../../${CONF[${ind}]}/scripts/BB_make.ldef |
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| 121 | |
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| 122 | # III. Build output sub-directories |
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| 123 | # ################################# |
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| 124 | # Directories from where Jobs will be launched |
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| 125 | # and where results will be stored before analysed |
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| 126 | cd ${OUTDIR} |
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| 127 | if [ ! -d 'NEMO_VALID' ] ; then |
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| 128 | mkdir NEMO_VALID |
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| 129 | fi |
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| 130 | cd NEMO_VALID |
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| 131 | if [ ! -d W${CONF[${ind}]} ] ; then |
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| 132 | mkdir W${CONF[${ind}]} |
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| 133 | fi |
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| 134 | if [ ! -d W${CONF[${ind}]}/mon ] ; then |
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| 135 | mkdir W${CONF[${ind}]}/mon |
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| 136 | fi |
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| 137 | if [ ! -d W${CONF[${ind}]}/mon/LONG ] ; then |
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| 138 | mkdir W${CONF[${ind}]}/mon/LONG |
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| 139 | mkdir W${CONF[${ind}]}/mon/LONG/REF |
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| 140 | fi |
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| 141 | if [ ! -d W${CONF[${ind}]}/mon/GTIME ] ; then |
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| 142 | mkdir W${CONF[${ind}]}/mon/GTIME |
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| 143 | mkdir W${CONF[${ind}]}/mon/GTIME/REF |
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| 144 | fi |
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| 145 | if [ ! -d W${CONF[${ind}]}/mon/1_SHORT ] ; then |
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| 146 | mkdir W${CONF[${ind}]}/mon/1_SHORT |
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| 147 | mkdir W${CONF[${ind}]}/mon/1_SHORT/REF |
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| 148 | fi |
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| 149 | if [ ! -d W${CONF[${ind}]}/mon/2_SHORT ] ; then |
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| 150 | mkdir W${CONF[${ind}]}/mon/2_SHORT |
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| 151 | mkdir W${CONF[${ind}]}/mon/2_SHORT/REF |
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| 152 | fi |
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| 153 | if [ ! -d W${CONF[${ind}]}/mpi ] ; then |
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| 154 | mkdir W${CONF[${ind}]}/mpi |
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| 155 | fi |
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| 156 | if [ ! -d W${CONF[${ind}]}/mpi/LONG ] ; then |
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| 157 | mkdir W${CONF[${ind}]}/mpi/LONG |
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| 158 | mkdir W${CONF[${ind}]}/mpi/LONG/REF |
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| 159 | fi |
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| 160 | if [ ! -d W${CONF[${ind}]}/mpi/GTIME ] ; then |
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| 161 | mkdir W${CONF[${ind}]}/mpi/GTIME |
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| 162 | mkdir W${CONF[${ind}]}/mpi/GTIME/REF |
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| 163 | fi |
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| 164 | if [ ! -d W${CONF[${ind}]}/mpi/1_SHORT ] ; then |
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| 165 | mkdir W${CONF[${ind}]}/mpi/1_SHORT |
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| 166 | mkdir W${CONF[${ind}]}/mpi/1_SHORT/REF |
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| 167 | fi |
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| 168 | if [ ! -d W${CONF[${ind}]}/mpi/2_SHORT ] ; then |
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| 169 | mkdir W${CONF[${ind}]}/mpi/2_SHORT |
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| 170 | mkdir W${CONF[${ind}]}/mpi/2_SHORT/REF |
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| 171 | fi |
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| 172 | if [ ! -d W${CONF[${ind}]}/omp ] ; then |
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| 173 | mkdir W${CONF[${ind}]}/omp |
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| 174 | fi |
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| 175 | if [ ! -d W${CONF[${ind}]}/omp/LONG ] ; then |
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| 176 | mkdir W${CONF[${ind}]}/omp/LONG |
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| 177 | mkdir W${CONF[${ind}]}/omp/LONG/REF |
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| 178 | fi |
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| 179 | if [ ! -d W${CONF[${ind}]}/omp/GTIME ] ; then |
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| 180 | mkdir W${CONF[${ind}]}/omp/GTIME |
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| 181 | mkdir W${CONF[${ind}]}/omp/GTIME/REF |
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| 182 | fi |
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| 183 | if [ ! -d W${CONF[${ind}]}/omp/1_SHORT ] ; then |
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| 184 | mkdir W${CONF[${ind}]}/omp/1_SHORT |
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| 185 | mkdir W${CONF[${ind}]}/omp/1_SHORT/REF |
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| 186 | fi |
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| 187 | if [ ! -d W${CONF[${ind}]}/omp/2_SHORT ] ; then |
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| 188 | mkdir W${CONF[${ind}]}/omp/2_SHORT |
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| 189 | mkdir W${CONF[${ind}]}/omp/2_SHORT/REF |
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| 190 | fi |
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| 191 | echo ' ' |
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| 192 | echo ' >>>>>>>> The following sub-directories have been built ' |
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| 193 | echo ' under main directory '$( pwd ) |
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| 194 | echo ' They are dedicated to store results' |
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| 195 | find W${CONF[${ind}]} -type d |
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| 196 | echo ' ' |
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| 197 | |
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| 198 | cd ${LCLDIR} |
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| 199 | |
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| 200 | let ind=$ind+1 |
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| 201 | done |
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| 202 | |
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| 203 | |
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| 204 | # IV. Modify lance_batch.ksh & assessment.ksh scripts |
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| 205 | # ################################################### |
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| 206 | # Set following variables in lance_batch.ksh script |
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| 207 | # - IODIR = directory where to get ORCA2_LIM_nemo_v2.tar |
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| 208 | # - PRC = total number of processors which will be used |
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| 209 | |
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| 210 | CAR_INPU_tmp=$( grep 'IODIR=' ./JOBS/lance_batch.ksh ) |
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| 211 | CAR_INPU=`echo $CAR_INPU_tmp | cut -f 1 -d " " ` |
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| 212 | CAR_PROC_tmp=$( grep 'PRC=' ./JOBS/lance_batch.ksh ) |
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| 213 | CAR_PROC=`echo $CAR_PROC_tmp | cut -f 1 -d " " ` |
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| 214 | CAR_TARG_tmp=$( grep 'TARGET=' ./JOBS/lance_batch.ksh | head -1) |
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| 215 | CAR_TARG=`echo $CAR_TARG_tmp | cut -f 1 -d " " ` |
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| 216 | sed -e "s?${CAR_INPU}?IODIR=${INPUTD}?" -e "s?${CAR_PROC}?PRC=${DECOMP}?" \ |
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| 217 | -e "s/${CAR_TARG}/TARGET=${LOCTARG}/" ./JOBS/lance_batch.ksh > ./JOBS/lance_batch.$$ |
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| 218 | mv ./JOBS/lance_batch.$$ ./JOBS/lance_batch.ksh && rm -f ./JOBS/lance_batch.$$ |
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| 219 | chmod 744 ./JOBS/lance_batch.ksh |
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| 220 | |
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| 221 | # Set following variables in assessment.ksh script |
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| 222 | # - TARGET = the current plateform |
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| 223 | # - MAIL = your e-mail |
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| 224 | CAR_TARG_tmp=$( grep 'TARGET=' ./JOBS/assessment.ksh ) |
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| 225 | CAR_TARG=`echo $CAR_TARG_tmp | cut -f 1 -d " " ` |
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| 226 | CAR_MAIL_tmp=$( grep 'EMAIL=' ./JOBS/assessment.ksh ) |
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| 227 | CAR_MAIL=`echo $CAR_MAIL_tmp | cut -f 1 -d " " ` |
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| 228 | sed -e "s/${CAR_TARG}/TARGET=${LOCTARG}/" -e "s/${CAR_MAIL}/EMAIL='${MAIL}'/" \ |
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| 229 | ./JOBS/assessment.ksh > ./JOBS/assessment.$$ |
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| 230 | mv ./JOBS/assessment.$$ ./JOBS/assessment.ksh && rm -f ./JOBS/assessment.$$ |
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| 231 | chmod 744 ./JOBS/assessment.ksh |
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| 232 | |
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| 233 | # V. Preliminary compilations |
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| 234 | # ########################### |
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| 235 | |
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| 236 | # IOIPSL compilation |
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| 237 | ../../../util/ins_make -w IOIPSL |
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| 238 | if [ ${LOCTARG} = 'sx8brodie' ] ; then |
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| 239 | (cd ../../../modeles/IOIPSL/src ; sxgmake ;) |
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| 240 | else |
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| 241 | (cd ../../../modeles/IOIPSL/src ; gmake ;) |
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| 242 | fi |
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| 243 | echo ' ' |
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| 244 | echo ' >>>>>>>> IOIPSL Makefile and compilation done' |
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| 245 | echo ' ' |
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| 246 | |
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| 247 | # AGRIF compilation |
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| 248 | if [ ${UAGRIF} = 'yes' ] ; then |
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| 249 | ../../../util/ins_make -w AGRIF |
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| 250 | (cd ../../../modeles/AGRIF/ ; gmake ;) |
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| 251 | echo ' ' |
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| 252 | echo ' AGRIF Makefile and compilation done' |
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| 253 | echo ' ' |
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| 254 | fi |
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| 255 | |
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| 256 | |
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| 257 | echo ' ' |
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| 258 | echo ' #############################################################' |
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| 259 | echo ' >>>>>>>> Now set "by hand" the mpi domain decomposition indices jpni, ' |
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| 260 | echo ' jpnj & jpnij in par_oce.F90_keep files (keeping the "_keep" extension) ' |
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| 261 | echo " in coherence with the ${DECOMP} total number of processors you just set " |
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| 262 | echo ' Make this modification in the following directories: ' |
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| 263 | ind=0 |
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| 264 | while [ $ind -lt ${NBCFG} ] |
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| 265 | do |
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| 266 | echo " ../config/${CONF[${ind}]}/MY_SRC" |
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| 267 | let ind=$ind+1 |
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| 268 | done |
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| 269 | echo ' ###########################################################' |
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| 270 | echo ' ' |
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