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sette_reference-configurations.sh @ 13900

Last change on this file since 13900 was 13755, checked in by andmirek, 4 years ago
Ticket #2462: Sette to test restarts read/write with XIOS
Property svn:executable set to ``*
File size: 63.3 KB

Rev	Line
[3520]	1	#!/bin/bash
[3708]	2	############################################################
[3520]	3	# Author : Simona Flavoni for NEMO
[4245]	4	# Contact: sflod@locean-ipsl.upmc.fr
	5	# 2013 : A.C. Coward added options for testing with XIOS in dettached mode
[3520]	6	#
	7	# sette.sh : principal script of SET TEsts for NEMO (SETTE)
	8	# ----------------------------------------------------------------------
	9	# NEMO/SETTE , NEMO Consortium (2010)
	10	# Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
	11	# ----------------------------------------------------------------------
	12	#
	13	#############################################################
[7744]	14	#set -vx
[3520]	15	set -o posix
	16	#set -u
	17	#set -e
[4245]	18	# ===========
[3520]	19	# DESCRIPTION
	20	# ===========
	21	#
	22	# Variables to be checked by user:
	23	#
[4245]	24	# COMPILER : name of compiler as defined in NEMOGCM/ARCH directory
	25	# BATCH_COMMAND_PAR : name of the command for submitting parallel batch jobs
	26	# BATCH_COMMAND_SEQ : name of the command for submitting sequential batch jobs
	27	# INTERACT_FLAG : flag to run in interactive mode "yes"
	28	# to run in batch mode "no"
	29	# MPIRUN_FLAG : flag to run in parallel (MPI) "yes"
	30	# to run in sequential mode (NB_PROC = 1) "no"
	31	# USING_XIOS : flag to control the activation of key_iomput
	32	# "yes" to compile using key_iomput and link to the external XIOS library
	33	# "no" to compile without key_iomput and link to the old IOIPSL library
	34	# USING_MPMD : flag to control the use of stand-alone IO servers
	35	# requires USING_XIOS="yes"
	36	# "yes" to run in MPMD (detached) mode with stand-alone IO servers
	37	# "no" to run in SPMD (attached) mode without separate IO servers
	38	# NUM_XIOSERVERS : number of stand-alone IO servers to employ
	39	# set to zero if USING_MPMD="no"
[3520]	40	#
	41	# Principal script is sette.sh, that calls
	42	#
[4245]	43	# makenemo : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe
[9576]	44	# and links to nemo in ${CONFIG_NAME}/EXP00)
[3520]	45	#
	46	# param.cfg : sets and loads following directories:
	47	#
[4245]	48	# FORCING_DIR : is the directory for forcing files (tarfile)
	49	# INPUT_DIR : is the directory for input files storing
	50	# TMPDIR : is the temporary directory (if needed)
[3520]	51	# NEMO_VALIDATION_DIR : is the validation directory
	52	#
	53	# (NOTE: this file is the same for all configrations to be tested with sette)
	54	#
[4245]	55	# all_functions.sh : loads functions used by sette (note: new functions can be added here)
	56	# set_namelist : function declared in all_functions that sets namelist parameters
	57	# post_test_tidyup : creates validation storage directory and copies required output files
[9019]	58	# (run.stat and ocean.output) in it after execution of test.
[3520]	59	#
[4245]	60	# VALIDATION tree is:
[3520]	61	#
	62	# NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
	63	#
	64	# prepare_exe_dir.sh : defines and creates directory where the test is executed
[4245]	65	# execution directory takes name of TEST_NAME defined for every test
	66	# in sette.sh. (each test in executed in its own directory)
[3520]	67	#
[10755]	68	# set_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	69	#
[10698]	70	# clean_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	71	# ( not doing it could lead to false positive )
	72	#
[4245]	73	# prepare_job.sh : to generate the script run_job.sh
[3520]	74	#
[4245]	75	# fcm_job.sh : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
	76	# see sette.sh and BATCH_TEMPLATE directory
[3520]	77	#
[4245]	78	# NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which
	79	# can be found paths to the input tar file)
	80	# NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR}
	81	# directory
	82	# NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists
	83	# remain in ${NEW_CONF}/EXP00
[3520]	84	#
[4245]	85	# NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of
	86	# executed commands
[3520]	87	#
[4245]	88	# NOTE: if sette.sh is stopped in output.sette there is written the last command
	89	# executed by sette.sh
[3520]	90	#
[4245]	91	# example use: ./sette.sh
	92	#########################################################################################
[3520]	93	#
[10687]	94	# LOAD param value
[10717]	95	SETTE_DIR=$(cd $(dirname "$0"); pwd)
	96	MAIN_DIR=$(dirname $SETTE_DIR)
[10687]	97	. ./param.cfg
[7743]	98
[10687]	99	export BATCH_COMMAND_PAR=${BATCH_CMD}
	100	export BATCH_COMMAND_SEQ=${BATCH_CMD}
[4990]	101	export INTERACT_FLAG="no"
[4245]	102	export MPIRUN_FLAG="yes"
[9941]	103	export USING_ICEBERGS="yes"
[3520]	104	#
[4245]	105	export DEL_KEYS="key_iomput"
	106	if [ ${USING_XIOS} == "yes" ]
	107	then
	108	export DEL_KEYS=""
	109	fi
[3520]	110	#
[10687]	111	export ADD_KEYS=""
	112	if [ ${ADD_NOSIGNEDZERO} == "yes" ]
	113	then
	114	export ADD_KEYS="key_nosignedzero"
	115	fi
	116	#
[4245]	117	# Settings which control the use of stand alone servers (only relevant if using xios)
[3520]	118	#
[10632]	119	export NUM_XIOSERVERS=4
[11140]	120	export JOB_PREFIX=${JOB_PREFIX_MPMD}
[3520]	121	#
[4245]	122	if [ ${USING_MPMD} == "no" ]
	123	then
	124	export NUM_XIOSERVERS=0
[11140]	125	export JOB_PREFIX=${JOB_PREFIX_NOMPMD}
[4245]	126	fi
[3520]	127	#
	128	#
[10573]	129	if [ ${USING_MPMD} == "yes" ] && [ ${USING_XIOS} == "no" ]
[4245]	130	then
	131	echo "Incompatible choices. MPMD mode requires the XIOS server"
	132	exit
	133	fi
[3520]	134
	135	# Directory to run the tests
[9602]	136	CONFIG_DIR0=${MAIN_DIR}/cfgs
	137	TOOLS_DIR=${MAIN_DIR}/tools
[3520]	138
	139	CMP_NAM=${1:-$COMPILER}
	140	# Copy job_batch_COMPILER file for specific compiler into job_batch_template
	141	cd ${SETTE_DIR}
[4245]	142	cp BATCH_TEMPLATE/${JOB_PREFIX}-${COMPILER} job_batch_template \|\| exit
[10747]	143	# Description of available configurations:
	144	# GYRE_PISCES :
	145	# ORCA2_ICE_PISCES :
	146	# ORCA2_OFF_PISCES :
	147	# AMM12 :
	148	# SAS :
	149	# ORCA2_ICE_OBS :
	150	# AGRIF : test AGRIF in a double zoom configuration in the nordic seas + 1 zoom in the eq. Pacific (AGRIF_DEMO)
	151	# and check that key_agrif without zoom = no key_agrif
[13754]	152	# WED025 : regional configuration including sea-ice and tides (Spitzbergen)
[4147]	153
[10747]	154	for config in ${TEST_CONFIGS}
[3520]	155	do
	156
[9518]	157	# -----------
	158	# GYRE_PISCES
	159	# -----------
[10747]	160	if [ ${config} == "GYRE_PISCES" ] ; then
[9518]	161	## Restartability tests for GYRE_PISCES
[13754]	162	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	163	then
	164	ITEND=12 # 1 day
	165	else
	166	ITEND=1080 # 90 days
	167	fi
	168	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[3520]	169	export TEST_NAME="LONG"
[9658]	170	cd ${MAIN_DIR}
[12569]	171	#
	172	# syncronisation if target directory/file exist (not done by makenemo)
	173	. ${SETTE_DIR}/all_functions.sh
	174	sync_config GYRE_PISCES GYRE_PISCES_ST 'cfgs'
	175	clean_config GYRE_PISCES GYRE_PISCES_ST 'cfgs'
	176	#
[11497]	177	. ./makenemo -m ${CMP_NAM} -n GYRE_PISCES_ST -r GYRE_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]	178	cd ${SETTE_DIR}
[4252]	179	. ./param.cfg
	180	. ./all_functions.sh
	181	. ./prepare_exe_dir.sh
[10755]	182	set_valid_dir
[10698]	183	clean_valid_dir
[3520]	184	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	185	NPROC=8
[4245]	186	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[4147]	187	cd ${EXE_DIR}
[7715]	188	set_namelist namelist_cfg cn_exp \"GYREPIS_LONG\"
[4147]	189	set_namelist namelist_cfg nn_it000 1
[13754]	190	set_namelist namelist_cfg nn_itend ${ITEND}
	191	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	192	set_namelist namelist_cfg ln_linssh .true.
[9525]	193	set_namelist namelist_cfg jpni 2
	194	set_namelist namelist_cfg jpnj 4
[10573]	195	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	196	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[12999]	197	if [ ${USING_XIOS_RRW} == "yes" ]
	198	then
	199	set_namelist namelist_cfg nn_wxios 1
	200	fi
[4245]	201	if [ ${USING_MPMD} == "yes" ] ; then
	202	set_xio_using_server iodef.xml true
	203	else
	204	set_xio_using_server iodef.xml false
	205	fi
	206	cd ${SETTE_DIR}
[10755]	207	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	208
	209	cd ${SETTE_DIR}
	210	export TEST_NAME="SHORT"
[4252]	211	. ./prepare_exe_dir.sh
[10755]	212	set_valid_dir
[10698]	213	clean_valid_dir
[3520]	214	cd ${EXE_DIR}
[7715]	215	set_namelist namelist_cfg cn_exp \"GYREPIS_SHORT\"
[13754]	216	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	217	set_namelist namelist_cfg nn_itend ${ITEND}
	218	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[4147]	219	set_namelist namelist_cfg ln_rstart .true.
	220	set_namelist namelist_cfg nn_rstctl 2
[7646]	221	set_namelist namelist_cfg ln_linssh .true.
[9525]	222	set_namelist namelist_cfg jpni 2
	223	set_namelist namelist_cfg jpnj 4
[10573]	224	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	225	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[7744]	226	set_namelist namelist_top_cfg ln_rsttr .true.
	227	set_namelist namelist_top_cfg nn_rsttr 2
[13754]	228	set_namelist namelist_cfg cn_ocerst_in \"GYREPIS_LONG_${ITRST}_restart\"
	229	set_namelist namelist_top_cfg cn_trcrst_in \"GYREPIS_LONG_${ITRST}_restart_trc\"
[12999]	230	if [ ${USING_XIOS_RRW} == "yes" ]
	231	then
	232	set_namelist namelist_cfg nn_wxios 1
	233	set_namelist namelist_cfg ln_xios_read .true.
	234	fi
[4245]	235	if [ ${USING_MPMD} == "yes" ] ; then
	236	set_xio_using_server iodef.xml true
	237	else
	238	set_xio_using_server iodef.xml false
	239	fi
[13755]	240
	241	if [ ${USING_XIOS_RRW} == "yes" ]
	242	then
	243	ln -sf ../LONG/GYREPIS_LONG_${ITRST}_restart.nc .
	244	ln -sf ../LONG/GYREPIS_LONG_${ITRST}_restart_trc.nc .
	245	else
	246	for (( i=1; i<=$NPROC; i++)) ; do
	247	L_NPROC=$(( $i - 1 ))
	248	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	249	ln -sf ../LONG/GYREPIS_LONG_${ITRST}_restart_${L_NPROC}.nc .
	250	ln -sf ../LONG/GYREPIS_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
	251	done
	252	fi
[3520]	253	cd ${SETTE_DIR}
[10755]	254	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	255	cd ${SETTE_DIR}
[3532]	256	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	257
[9518]	258	## Reproducibility tests for GYRE_PISCES
[9525]	259	export TEST_NAME="REPRO_2_4"
[9658]	260	cd ${MAIN_DIR}
[3520]	261	cd ${SETTE_DIR}
[4252]	262	. ./param.cfg
	263	. ./all_functions.sh
	264	. ./prepare_exe_dir.sh
[10755]	265	set_valid_dir
[10698]	266	clean_valid_dir
[3520]	267	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	268	NPROC=8
[4245]	269	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	270	cd ${EXE_DIR}
[7715]	271	set_namelist namelist_cfg cn_exp \"GYREPIS_48\"
[4147]	272	set_namelist namelist_cfg nn_it000 1
[13754]	273	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	274	set_namelist namelist_cfg ln_linssh .true.
[9525]	275	set_namelist namelist_cfg jpni 2
	276	set_namelist namelist_cfg jpnj 4
[10573]	277	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	278	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[13755]	279	if [ ${USING_XIOS_RRW} == "yes" ]
	280	then
[12999]	281	set_namelist namelist_cfg nn_wxios 1
	282	fi
[4245]	283	if [ ${USING_MPMD} == "yes" ] ; then
	284	set_xio_using_server iodef.xml true
	285	else
	286	set_xio_using_server iodef.xml false
	287	fi
[3520]	288	cd ${SETTE_DIR}
[10755]	289	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	290	cd ${SETTE_DIR}
	291	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	292
	293	cd ${SETTE_DIR}
[9525]	294	export TEST_NAME="REPRO_4_2"
[4252]	295	. ./prepare_exe_dir.sh
[10755]	296	set_valid_dir
[10698]	297	clean_valid_dir
[3680]	298	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	299	NPROC=8
[4245]	300	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	301	cd ${EXE_DIR}
[7715]	302	set_namelist namelist_cfg cn_exp \"GYREPIS_84\"
[4147]	303	set_namelist namelist_cfg nn_it000 1
[13754]	304	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	305	set_namelist namelist_cfg ln_linssh .true.
[9525]	306	set_namelist namelist_cfg jpni 4
	307	set_namelist namelist_cfg jpnj 2
[10573]	308	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	309	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[4245]	310	if [ ${USING_MPMD} == "yes" ] ; then
	311	set_xio_using_server iodef.xml true
	312	else
	313	set_xio_using_server iodef.xml false
	314	fi
[3520]	315	cd ${SETTE_DIR}
[10755]	316	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	317	cd ${SETTE_DIR}
	318	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3532]	319
[3520]	320	fi
	321
[9518]	322	# -----------------
[9663]	323	# ORCA2_ICE_PISCES
[9518]	324	# -----------------
[10747]	325	if [ ${config} == "ORCA2_ICE_PISCES" ] ; then
[9663]	326	## Restartability tests for ORCA2_ICE_PISCES
[13754]	327	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	328	then
	329	ITEND=16 # 1 day
	330	else
	331	ITEND=992 # 62 days
	332	fi
	333	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[7646]	334	export TEST_NAME="LONG"
[9658]	335	cd ${MAIN_DIR}
[12569]	336	#
	337	# syncronisation if target directory/file exist (not done by makenemo)
	338	. ${SETTE_DIR}/all_functions.sh
	339	sync_config ORCA2_ICE_PISCES ORCA2_ICE_PISCES_ST 'cfgs'
	340	clean_config ORCA2_ICE_PISCES ORCA2_ICE_PISCES_ST 'cfgs'
	341	#
[11497]	342	. ./makenemo -m ${CMP_NAM} -n ORCA2_ICE_PISCES_ST -r ORCA2_ICE_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[7646]	343	cd ${SETTE_DIR}
	344	. ./param.cfg
	345	. ./all_functions.sh
	346	. ./prepare_exe_dir.sh
[10755]	347	set_valid_dir
[10698]	348	clean_valid_dir
[7646]	349	JOB_FILE=${EXE_DIR}/run_job.sh
	350	NPROC=32
	351	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	352	cd ${EXE_DIR}
[13755]	353	if [ ${USING_XIOS_RRW} == "yes" ]
	354	then
	355	set_namelist namelist_cfg nn_wxios 1
	356	fi
[7646]	357	set_namelist namelist_cfg cn_exp \"O2L3P_LONG\"
	358	set_namelist namelist_cfg nn_it000 1
[13754]	359	set_namelist namelist_cfg nn_itend ${ITEND}
	360	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	361	set_namelist namelist_cfg jpni 4
	362	set_namelist namelist_cfg jpnj 8
[10573]	363	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	364	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9933]	365	set_namelist namelist_cfg ln_use_calving .true.
[10189]	366	set_namelist namelist_cfg ln_wave .true.
	367	set_namelist namelist_cfg ln_cdgw .true.
	368	set_namelist namelist_cfg ln_sdw .true.
	369	set_namelist namelist_cfg nn_sdrift 1
	370	set_namelist namelist_cfg ln_stcor .true.
	371	set_namelist namelist_cfg ln_tauwoc .true.
[9904]	372	#
	373	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10687]	374	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[9904]	375	#
[9019]	376	set_namelist namelist_ice_cfg ln_icediachk .true.
[4147]	377	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	378	set_namelist namelist_top_cfg ln_trcbc .false.
	379	# put ln_ironsed, ln_hydrofe to false
[3520]	380	# if not you need input files, and for tests is not necessary
[4147]	381	set_namelist namelist_pisces_cfg ln_varpar .false.
	382	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	383	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	384	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[9203]	385	# put ln_pisdmp to false : no restoring to global mean value
	386	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	387	if [ ${USING_MPMD} == "yes" ] ; then
	388	set_xio_using_server iodef.xml true
	389	else
	390	set_xio_using_server iodef.xml false
	391	fi
[3520]	392	cd ${SETTE_DIR}
[10755]	393	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3532]	394
	395	cd ${SETTE_DIR}
[3520]	396	export TEST_NAME="SHORT"
[4252]	397	. ./prepare_exe_dir.sh
[10755]	398	set_valid_dir
[10698]	399	clean_valid_dir
[3520]	400	cd ${EXE_DIR}
[7646]	401	set_namelist namelist_cfg cn_exp \"O2L3P_SHORT\"
[13754]	402	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	403	set_namelist namelist_cfg nn_itend ${ITEND}
	404	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[4147]	405	set_namelist namelist_cfg ln_rstart .true.
	406	set_namelist namelist_cfg nn_rstctl 2
[7646]	407	set_namelist namelist_cfg jpni 4
	408	set_namelist namelist_cfg jpnj 8
[10573]	409	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	410	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9920]	411	set_namelist namelist_cfg nn_test_icebergs -1
[10189]	412	set_namelist namelist_cfg ln_wave .true.
	413	set_namelist namelist_cfg ln_cdgw .true.
	414	set_namelist namelist_cfg ln_sdw .true.
	415	set_namelist namelist_cfg nn_sdrift 1
	416	set_namelist namelist_cfg ln_stcor .true.
	417	set_namelist namelist_cfg ln_tauwoc .true.
[12999]	418	if [ ${USING_XIOS_RRW} == "yes" ]
	419	then
	420	set_namelist namelist_cfg nn_wxios 1
	421	set_namelist namelist_cfg ln_xios_read .true.
	422	fi
[9904]	423	#
	424	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10732]	425	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[9904]	426	#
[9933]	427	set_namelist namelist_ice_cfg ln_icediachk .true.
[4147]	428	set_namelist namelist_top_cfg ln_rsttr .true.
	429	set_namelist namelist_top_cfg nn_rsttr 2
[13754]	430	set_namelist namelist_cfg cn_ocerst_in \"O2L3P_LONG_${ITRST}_restart\"
	431	set_namelist namelist_cfg cn_icbrst_in \"O2L3P_LONG_${ITRST}_restart_icb\"
	432	set_namelist namelist_top_cfg cn_trcrst_in \"O2L3P_LONG_${ITRST}_restart_trc\"
	433	set_namelist namelist_ice_cfg cn_icerst_in \"O2L3P_LONG_${ITRST}_restart_ice\"
[12428]	434	set_namelist namelist_top_cfg ln_trcbc .false.
	435	# put ln_ironsed, ln_hydrofe to false
[3520]	436	# if not you need input files, and for tests is not necessary
[4147]	437	set_namelist namelist_pisces_cfg ln_varpar .false.
	438	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	439	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	440	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	441	# put ln_pisdmp to false : no restoring to global mean value
[4147]	442	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[13755]	443	if [ ${USING_XIOS_RRW} == "yes" ]
	444	then
	445	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart.nc .
	446	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_trc.nc .
	447	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_ice.nc .
	448	if [ ${USING_ICEBERGS} == "yes" ]
	449	then
	450	for (( i=1; i<=$NPROC; i++)) ; do
	451	L_NPROC=$(( $i - 1 ))
	452	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	453	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_icb_${L_NPROC}.nc O2L3P_LONG_${ITRST}_restart_icb_${L_NPROC}.nc
	454	done
	455	fi
	456	else
	457	for (( i=1; i<=$NPROC; i++)) ; do
	458	L_NPROC=$(( $i - 1 ))
	459	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	460	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_${L_NPROC}.nc .
	461	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
	462	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_ice_${L_NPROC}.nc .
	463	if [ ${USING_ICEBERGS} == "yes" ]
	464	then
	465	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_icb_${L_NPROC}.nc O2L3P_LONG_${ITRST}_restart_icb_${L_NPROC}.nc
	466	fi
	467	done
[12999]	468	fi
[4245]	469	if [ ${USING_MPMD} == "yes" ] ; then
	470	set_xio_using_server iodef.xml true
	471	else
	472	set_xio_using_server iodef.xml false
	473	fi
[3520]	474	cd ${SETTE_DIR}
[10755]	475	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	476	cd ${SETTE_DIR}
[3532]	477	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	478
[9663]	479	## Reproducibility tests for ORCA2_ICE_PISCES
[7646]	480	export TEST_NAME="REPRO_4_8"
[9658]	481	cd ${MAIN_DIR}
[3520]	482	cd ${SETTE_DIR}
[4252]	483	. ./param.cfg
	484	. ./all_functions.sh
	485	. ./prepare_exe_dir.sh
[10755]	486	set_valid_dir
[10698]	487	clean_valid_dir
[3520]	488	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	489	NPROC=32
[4245]	490	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	491	cd ${EXE_DIR}
[9019]	492	set_namelist namelist_cfg cn_exp \"O2L3P_48\"
[4147]	493	set_namelist namelist_cfg nn_it000 1
[13754]	494	set_namelist namelist_cfg nn_itend ${ITEND}
[4147]	495	set_namelist namelist_cfg jpni 4
[7646]	496	set_namelist namelist_cfg jpnj 8
[10573]	497	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	498	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[10189]	499	set_namelist namelist_cfg ln_wave .true.
	500	set_namelist namelist_cfg ln_cdgw .true.
	501	set_namelist namelist_cfg ln_sdw .true.
	502	set_namelist namelist_cfg nn_sdrift 1
	503	set_namelist namelist_cfg ln_stcor .true.
	504	set_namelist namelist_cfg ln_tauwoc .true.
	505
[9904]	506	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10687]	507	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
	508
[4147]	509	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	510	set_namelist namelist_top_cfg ln_trcbc .false.
	511	# put ln_ironsed, ln_hydrofe to false
[3520]	512	# if not you need input files, and for tests is not necessary
[4147]	513	set_namelist namelist_pisces_cfg ln_varpar .false.
	514	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	515	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	516	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	517	# put ln_pisdmp to false : no restoring to global mean value
[4147]	518	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	519	if [ ${USING_MPMD} == "yes" ] ; then
	520	set_xio_using_server iodef.xml true
	521	else
	522	set_xio_using_server iodef.xml false
	523	fi
[3520]	524	cd ${SETTE_DIR}
[10755]	525	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	526	cd ${SETTE_DIR}
[3532]	527	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	528
	529	cd ${SETTE_DIR}
[7646]	530	export TEST_NAME="REPRO_8_4"
[4252]	531	. ./prepare_exe_dir.sh
[10755]	532	set_valid_dir
[10698]	533	clean_valid_dir
[3680]	534	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	535	NPROC=32
[4245]	536	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	537	cd ${EXE_DIR}
[9019]	538	set_namelist namelist_cfg cn_exp \"O2L3P_84\"
[4147]	539	set_namelist namelist_cfg nn_it000 1
[13754]	540	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	541	set_namelist namelist_cfg jpni 8
	542	set_namelist namelist_cfg jpnj 4
[10573]	543	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	544	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[10189]	545	set_namelist namelist_cfg ln_wave .true.
	546	set_namelist namelist_cfg ln_cdgw .true.
	547	set_namelist namelist_cfg ln_sdw .true.
	548	set_namelist namelist_cfg nn_sdrift 1
	549	set_namelist namelist_cfg ln_stcor .true.
	550	set_namelist namelist_cfg ln_tauwoc .true.
[10687]	551
[9904]	552	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10687]	553	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
	554
[4147]	555	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	556	set_namelist namelist_top_cfg ln_trcbc .false.
	557	# put ln_ironsed, ln_hydrofe to false
[3520]	558	# if not you need input files, and for tests is not necessary
[4147]	559	set_namelist namelist_pisces_cfg ln_varpar .false.
	560	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	561	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	562	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[13755]	563	if [ ${USING_XIOS_RRW} == "yes" ]
	564	then
	565	set_namelist namelist_cfg nn_wxios 1
	566	fi
[3680]	567	# put ln_pisdmp to false : no restoring to global mean value
[4147]	568	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	569	if [ ${USING_MPMD} == "yes" ] ; then
	570	set_xio_using_server iodef.xml true
	571	else
	572	set_xio_using_server iodef.xml false
	573	fi
[3520]	574	cd ${SETTE_DIR}
[10755]	575	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	576	cd ${SETTE_DIR}
	577	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	578	fi
	579
[9518]	580	# ----------------
	581	# ORCA2_OFF_PISCES
	582	# ----------------
[10747]	583	if [ ${config} == "ORCA2_OFF_PISCES" ] ; then
[9518]	584	## Restartability tests for ORCA2_OFF_PISCES
[13754]	585	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	586	then
	587	ITEND=16 # 4 days
	588	else
	589	ITEND=380 # 95 days
	590	fi
	591	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[3520]	592	export TEST_NAME="LONG"
[9658]	593	cd ${MAIN_DIR}
[12569]	594	#
	595	# syncronisation if target directory/file exist (not done by makenemo)
	596	. ${SETTE_DIR}/all_functions.sh
	597	sync_config ORCA2_OFF_PISCES ORCA2_OFF_PISCES_ST 'cfgs'
	598	clean_config ORCA2_OFF_PISCES ORCA2_OFF_PISCES_ST 'cfgs'
	599	#
[11497]	600	. ./makenemo -m ${CMP_NAM} -n ORCA2_OFF_PISCES_ST -r ORCA2_OFF_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]	601	cd ${SETTE_DIR}
[4252]	602	. ./param.cfg
	603	. ./all_functions.sh
	604	. ./prepare_exe_dir.sh
[10755]	605	set_valid_dir
[10698]	606	clean_valid_dir
[3520]	607	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	608	NPROC=32
[4245]	609	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	610	cd ${EXE_DIR}
[4147]	611	set_namelist namelist_cfg cn_exp \"OFFP_LONG\"
	612	set_namelist namelist_cfg nn_it000 1
[13754]	613	set_namelist namelist_cfg nn_itend ${ITEND}
	614	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	615	set_namelist namelist_cfg jpni 4
	616	set_namelist namelist_cfg jpnj 8
[10573]	617	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	618	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	619	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	620	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	621	set_namelist namelist_top_cfg ln_trcbc .false.
	622	# put ln_ironsed, ln_hydrofe to false
[3520]	623	# if not you need input files, and for tests is not necessary
[4147]	624	set_namelist namelist_pisces_cfg ln_varpar .false.
	625	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	626	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	627	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	628	# put ln_pisdmp to false : no restoring to global mean value
[4147]	629	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[13755]	630	if [ ${USING_XIOS_RRW} == "yes" ]
	631	then
	632	set_namelist namelist_cfg nn_wxios 1
	633	fi
[4245]	634	if [ ${USING_MPMD} == "yes" ] ; then
	635	set_xio_using_server iodef.xml true
	636	else
	637	set_xio_using_server iodef.xml false
	638	fi
[3520]	639	cd ${SETTE_DIR}
[10755]	640	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	641
	642	cd ${SETTE_DIR}
	643	export TEST_NAME="SHORT"
[4252]	644	. ./prepare_exe_dir.sh
[10755]	645	set_valid_dir
[10698]	646	clean_valid_dir
[3520]	647	cd ${EXE_DIR}
[4147]	648	set_namelist namelist_cfg cn_exp \"OFFP_SHORT\"
[13754]	649	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	650	set_namelist namelist_cfg nn_itend ${ITEND}
	651	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	652	set_namelist namelist_cfg jpni 4
	653	set_namelist namelist_cfg jpnj 8
[10573]	654	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	655	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	656	set_namelist namelist_cfg ln_qsr_rgb .true.
[13755]	657	set_namelist namelist_top_cfg ln_rsttr .true.
	658	set_namelist namelist_top_cfg nn_rsttr 2
	659	set_namelist namelist_top_cfg cn_trcrst_in \"OFFP_LONG_${ITRST}_restart_trc\"
	660	if [ ${USING_XIOS_RRW} == "yes" ]
	661	then
[12999]	662	set_namelist namelist_cfg nn_wxios 1
	663	set_namelist namelist_cfg ln_xios_read .true.
	664	fi
[13755]	665	if [ ${USING_XIOS_RRW} == "yes" ]
	666	then
	667	ln -sf ../LONG/OFFP_LONG_${ITRST}_restart_trc.nc .
	668	else
	669	for (( i=1; i<=$NPROC; i++)) ; do
	670	L_NPROC=$(( $i - 1 ))
	671	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	672	ln -sf ../LONG/OFFP_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
	673	done
	674	fi
[12428]	675	set_namelist namelist_top_cfg ln_trcbc .false.
	676	# put ln_ironsed, ln_hydrofe to false
[3520]	677	# if not you need input files, and for tests is not necessary
[4147]	678	set_namelist namelist_pisces_cfg ln_varpar .false.
	679	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	680	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	681	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	682	# put ln_pisdmp to false : no restoring to global mean value
[4147]	683	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	684	if [ ${USING_MPMD} == "yes" ] ; then
	685	set_xio_using_server iodef.xml true
	686	else
	687	set_xio_using_server iodef.xml false
	688	fi
[3520]	689	cd ${SETTE_DIR}
[10755]	690	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	691	cd ${SETTE_DIR}
	692	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	693
[9518]	694	## Reproducibility tests for ORCA2_OFF_PISCES
[7646]	695	export TEST_NAME="REPRO_4_8"
[9658]	696	cd ${MAIN_DIR}
[3520]	697	cd ${SETTE_DIR}
[4252]	698	. ./param.cfg
	699	. ./all_functions.sh
	700	. ./prepare_exe_dir.sh
[10755]	701	set_valid_dir
[10698]	702	clean_valid_dir
[3520]	703	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	704	NPROC=32
[4245]	705	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	706	cd ${EXE_DIR}
[9019]	707	set_namelist namelist_cfg cn_exp \"OFFP_48\"
[4147]	708	set_namelist namelist_cfg nn_it000 1
[13754]	709	set_namelist namelist_cfg nn_itend ${ITEND}
[4147]	710	set_namelist namelist_cfg jpni 4
[7646]	711	set_namelist namelist_cfg jpnj 8
[10573]	712	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	713	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	714	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	715	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	716	set_namelist namelist_top_cfg ln_trcbc .false.
	717	# put ln_ironsed, ln_hydrofe to false
[3520]	718	# if not you need input files, and for tests is not necessary
[4147]	719	set_namelist namelist_pisces_cfg ln_varpar .false.
	720	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	721	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	722	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	723	# put ln_pisdmp to false : no restoring to global mean value
[4147]	724	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[13755]	725	if [ ${USING_XIOS_RRW} == "yes" ]
	726	then
	727	set_namelist namelist_cfg nn_wxios 1
	728	fi
[4245]	729	if [ ${USING_MPMD} == "yes" ] ; then
	730	set_xio_using_server iodef.xml true
	731	else
	732	set_xio_using_server iodef.xml false
	733	fi
[3520]	734	cd ${SETTE_DIR}
[10755]	735	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	736	cd ${SETTE_DIR}
[3532]	737	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	738
	739	cd ${SETTE_DIR}
[7646]	740	export TEST_NAME="REPRO_8_4"
[4252]	741	. ./prepare_exe_dir.sh
[10755]	742	set_valid_dir
[10698]	743	clean_valid_dir
[3680]	744	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	745	NPROC=32
[4245]	746	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	747	cd ${EXE_DIR}
[9019]	748	set_namelist namelist_cfg cn_exp \"OFFP_84\"
[4147]	749	set_namelist namelist_cfg nn_it000 1
[13754]	750	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	751	set_namelist namelist_cfg jpni 8
	752	set_namelist namelist_cfg jpnj 4
[10573]	753	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	754	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	755	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	756	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	757	set_namelist namelist_top_cfg ln_trcbc .false.
	758	# put ln_ironsed, ln_hydrofe to false
[3520]	759	# if not you need input files, and for tests is not necessary
[4147]	760	set_namelist namelist_pisces_cfg ln_varpar .false.
	761	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	762	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	763	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	764	# put ln_pisdmp to false : no restoring to global mean value
[4147]	765	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	766	if [ ${USING_MPMD} == "yes" ] ; then
	767	set_xio_using_server iodef.xml true
	768	else
	769	set_xio_using_server iodef.xml false
	770	fi
[3520]	771	cd ${SETTE_DIR}
[10755]	772	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	773	cd ${SETTE_DIR}
	774	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	775	fi
	776
[9518]	777	# -----
	778	# AMM12
	779	# -----
[10747]	780	if [ ${config} == "AMM12" ] ; then
[3532]	781	## Restartability tests for AMM12
[13754]	782	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	783	then
	784	ITEND=12 # 3 h
	785	else
	786	ITEND=576 # 4 days
	787	fi
	788	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[3532]	789	export TEST_NAME="LONG"
[9658]	790	cd ${MAIN_DIR}
[12569]	791	#
	792	# syncronisation if target directory/file exist (not done by makenemo)
	793	. ${SETTE_DIR}/all_functions.sh
	794	sync_config AMM12 AMM12_ST 'cfgs'
	795	clean_config AMM12 AMM12_ST 'cfgs'
	796	#
[11497]	797	. ./makenemo -m ${CMP_NAM} -n AMM12_ST -r AMM12 -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]	798	cd ${SETTE_DIR}
[4252]	799	. ./param.cfg
	800	. ./all_functions.sh
	801	. ./prepare_exe_dir.sh
[10755]	802	set_valid_dir
[10698]	803	clean_valid_dir
[3520]	804	JOB_FILE=${EXE_DIR}/run_job.sh
	805	NPROC=32
[4245]	806	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	807	cd ${EXE_DIR}
[9019]	808	set_namelist namelist_cfg cn_exp \"AMM12_LONG\"
[4147]	809	set_namelist namelist_cfg nn_it000 1
[13754]	810	set_namelist namelist_cfg nn_itend ${ITEND}
	811	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	812	set_namelist namelist_cfg jpni 4
	813	set_namelist namelist_cfg jpnj 8
[10573]	814	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[12999]	815	if [ ${USING_XIOS_RRW} == "yes" ]
	816	then
	817	set_namelist namelist_cfg nn_wxios 1
	818	fi
[4245]	819	if [ ${USING_MPMD} == "yes" ] ; then
	820	set_xio_using_server iodef.xml true
	821	else
	822	set_xio_using_server iodef.xml false
	823	fi
[3520]	824	cd ${SETTE_DIR}
[10755]	825	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	826
	827	cd ${SETTE_DIR}
[3532]	828	export TEST_NAME="SHORT"
[4379]	829	. ./prepare_exe_dir.sh
[10755]	830	set_valid_dir
[10698]	831	clean_valid_dir
[3520]	832	cd ${EXE_DIR}
[9019]	833	set_namelist namelist_cfg cn_exp \"AMM12_SHORT\"
[13754]	834	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	835	set_namelist namelist_cfg nn_itend ${ITEND}
	836	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	837	set_namelist namelist_cfg jpni 4
	838	set_namelist namelist_cfg jpnj 8
[10573]	839	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4147]	840	set_namelist namelist_cfg ln_rstart .true.
	841	set_namelist namelist_cfg nn_rstctl 2
[13754]	842	set_namelist namelist_cfg cn_ocerst_in \"AMM12_LONG_${ITRST}_restart\"
[4252]	843	set_namelist namelist_cfg nn_date0 20120102
[13755]	844	if [ ${USING_XIOS_RRW} == "yes" ]
	845	then
	846	set_namelist namelist_cfg nn_wxios 1
	847	set_namelist namelist_cfg ln_xios_read .true.
	848	fi
	849	if [ ${USING_XIOS_RRW} == "yes" ]
	850	then
	851	ln -sf ../LONG/AMM12_LONG_${ITRST}_restart.nc .
	852	else
	853	for (( i=1; i<=$NPROC; i++)) ; do
	854	L_NPROC=$(( $i - 1 ))
	855	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	856	ln -sf ../LONG/AMM12_LONG_${ITRST}_restart_${L_NPROC}.nc .
	857	done
	858	fi
[4245]	859	if [ ${USING_MPMD} == "yes" ] ; then
	860	set_xio_using_server iodef.xml true
	861	else
	862	set_xio_using_server iodef.xml false
	863	fi
[3520]	864	cd ${SETTE_DIR}
[10755]	865	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	866	cd ${SETTE_DIR}
[3532]	867	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	868
[3680]	869	## Reproducibility tests for AMM12
	870	export TEST_NAME="REPRO_8_4"
[9658]	871	cd ${MAIN_DIR}
[3520]	872	cd ${SETTE_DIR}
[4252]	873	. ./param.cfg
	874	. ./all_functions.sh
	875	. ./prepare_exe_dir.sh
[10755]	876	set_valid_dir
[10698]	877	clean_valid_dir
[3520]	878	JOB_FILE=${EXE_DIR}/run_job.sh
	879	NPROC=32
[4245]	880	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	881	cd ${EXE_DIR}
[9019]	882	set_namelist namelist_cfg cn_exp \"AMM12_84\"
[4147]	883	set_namelist namelist_cfg nn_it000 1
[13754]	884	set_namelist namelist_cfg nn_itend ${ITEND}
[4147]	885	set_namelist namelist_cfg jpni 8
	886	set_namelist namelist_cfg jpnj 4
[10573]	887	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13755]	888	if [ ${USING_XIOS_RRW} == "yes" ]
	889	then
[12999]	890	set_namelist namelist_cfg nn_wxios 1
	891	fi
[4245]	892	if [ ${USING_MPMD} == "yes" ] ; then
	893	set_xio_using_server iodef.xml true
	894	else
	895	set_xio_using_server iodef.xml false
	896	fi
[3520]	897	cd ${SETTE_DIR}
[10755]	898	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	899	cd ${SETTE_DIR}
	900	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	901
	902	cd ${SETTE_DIR}
[3680]	903	export TEST_NAME="REPRO_4_8"
[4252]	904	. ./prepare_exe_dir.sh
[10755]	905	set_valid_dir
[10698]	906	clean_valid_dir
[5478]	907	JOB_FILE=${EXE_DIR}/run_job.sh
	908	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	909	cd ${EXE_DIR}
[9019]	910	set_namelist namelist_cfg cn_exp \"AMM12_48\"
[4147]	911	set_namelist namelist_cfg nn_it000 1
[13754]	912	set_namelist namelist_cfg nn_itend ${ITEND}
[4147]	913	set_namelist namelist_cfg jpni 4
	914	set_namelist namelist_cfg jpnj 8
[10573]	915	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4245]	916	if [ ${USING_MPMD} == "yes" ] ; then
	917	set_xio_using_server iodef.xml true
	918	else
	919	set_xio_using_server iodef.xml false
	920	fi
[3520]	921	cd ${SETTE_DIR}
[10755]	922	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	923	cd ${SETTE_DIR}
[3532]	924	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	925	fi
	926
	927
[9518]	928	# ---------
	929	# ORCA2_SAS
	930	# ---------
[10747]	931	if [ ${config} == "SAS" ] ; then
[9518]	932	## Restartability tests
[13754]	933	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	934	then
	935	ITEND=16 # 1 day
	936	else
	937	ITEND=256 # 16 days
	938	fi
	939	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[4147]	940	export TEST_NAME="LONG"
[9658]	941	cd ${MAIN_DIR}
[12569]	942	#
	943	# syncronisation if target directory/file exist (not done by makenemo)
	944	. ${SETTE_DIR}/all_functions.sh
	945	sync_config ORCA2_SAS_ICE ORCA2_SAS_ICE_ST 'cfgs'
	946	clean_config ORCA2_SAS_ICE ORCA2_SAS_ICE_ST 'cfgs'
	947	#
[11497]	948	. ./makenemo -m ${CMP_NAM} -n ORCA2_SAS_ICE_ST -r ORCA2_SAS_ICE -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[4147]	949	cd ${SETTE_DIR}
[4252]	950	. ./param.cfg
	951	. ./all_functions.sh
	952	. ./prepare_exe_dir.sh
[10755]	953	set_valid_dir
[10698]	954	clean_valid_dir
[4147]	955	JOB_FILE=${EXE_DIR}/run_job.sh
	956	NPROC=32
[7646]	957	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[4147]	958	cd ${EXE_DIR}
	959	set_namelist namelist_cfg cn_exp \"SAS\"
	960	set_namelist namelist_cfg nn_it000 1
[13754]	961	set_namelist namelist_cfg nn_itend ${ITEND}
	962	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	963	set_namelist namelist_cfg jpni 4
	964	set_namelist namelist_cfg jpnj 8
[10573]	965	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9019]	966	set_namelist namelist_ice_cfg ln_icediachk .true.
[12999]	967	if [ ${USING_XIOS_RRW} == "yes" ]
	968	then
	969	set_namelist namelist_cfg nn_wxios 1
	970	fi
[4245]	971	if [ ${USING_MPMD} == "yes" ] ; then
	972	set_xio_using_server iodef.xml true
	973	else
	974	set_xio_using_server iodef.xml false
	975	fi
[4147]	976	cd ${SETTE_DIR}
[10755]	977	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4147]	978
	979	cd ${SETTE_DIR}
	980	export TEST_NAME="SHORT"
[4252]	981	. ./prepare_exe_dir.sh
[10755]	982	set_valid_dir
[10698]	983	clean_valid_dir
[4147]	984	cd ${EXE_DIR}
	985	set_namelist namelist_cfg cn_exp \"SAS\"
[13754]	986	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	987	set_namelist namelist_cfg nn_itend ${ITEND}
	988	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	989	set_namelist namelist_cfg jpni 4
	990	set_namelist namelist_cfg jpnj 8
[10573]	991	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[7646]	992	set_namelist namelist_cfg ln_rstart .true.
[4147]	993	set_namelist namelist_cfg nn_rstctl 2
[9019]	994	set_namelist namelist_cfg nn_date0 010109
[13754]	995	set_namelist namelist_cfg cn_ocerst_in \"SAS_${ITRST}_restart\"
	996	set_namelist namelist_ice_cfg cn_icerst_in \"SAS_${ITRST}_restart_ice\"
[13755]	997	if [ ${USING_MPMD} == "yes" ] ; then
	998	set_xio_using_server iodef.xml true
	999	else
	1000	set_xio_using_server iodef.xml false
	1001	fi
[12999]	1002	if [ ${USING_XIOS_RRW} == "yes" ]
	1003	then
	1004	set_namelist namelist_cfg nn_wxios 1
	1005	set_namelist namelist_cfg ln_xios_read .true.
	1006	fi
[13755]	1007	if [ ${USING_XIOS_RRW} == "yes" ]
	1008	then
	1009	ln -sf ../LONG/SAS_${ITRST}_restart.nc .
	1010	ln -sf ../LONG/SAS_${ITRST}_restart_ice.nc .
[4245]	1011	else
[13755]	1012	for (( i=1; i<=$NPROC; i++)) ; do
	1013	L_NPROC=$(( $i - 1 ))
	1014	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	1015	ln -sf ../LONG/SAS_${ITRST}_restart_${L_NPROC}.nc .
	1016	ln -sf ../LONG/SAS_${ITRST}_restart_ice_${L_NPROC}.nc .
	1017	done
[4245]	1018	fi
[4147]	1019	cd ${SETTE_DIR}
[10755]	1020	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4147]	1021	cd ${SETTE_DIR}
	1022	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1023
[9518]	1024	## Reproducibility tests
[13754]	1025	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	1026	then
	1027	ITEND=16 # 1 day
	1028	else
	1029	ITEND=80 # 5 days
	1030	fi
[9518]	1031	export TEST_NAME="REPRO_4_8"
[9658]	1032	cd ${MAIN_DIR}
[4990]	1033	cd ${SETTE_DIR}
	1034	. ./param.cfg
	1035	. ./all_functions.sh
	1036	. ./prepare_exe_dir.sh
[10755]	1037	set_valid_dir
[10698]	1038	clean_valid_dir
[4990]	1039	JOB_FILE=${EXE_DIR}/run_job.sh
[9518]	1040	NPROC=32
[4990]	1041	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1042	cd ${EXE_DIR}
[9518]	1043	set_namelist namelist_cfg cn_exp \"SAS_48\"
[4990]	1044	set_namelist namelist_cfg nn_it000 1
[13754]	1045	set_namelist namelist_cfg nn_itend ${ITEND}
[9518]	1046	set_namelist namelist_cfg jpni 4
	1047	set_namelist namelist_cfg jpnj 8
[10573]	1048	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4990]	1049	if [ ${USING_MPMD} == "yes" ] ; then
	1050	set_xio_using_server iodef.xml true
	1051	else
	1052	set_xio_using_server iodef.xml false
	1053	fi
	1054	cd ${SETTE_DIR}
[10755]	1055	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1056	cd ${SETTE_DIR}
	1057	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[9019]	1058
[4990]	1059	cd ${SETTE_DIR}
[7646]	1060	export TEST_NAME="REPRO_8_4"
[4990]	1061	. ./prepare_exe_dir.sh
[10755]	1062	set_valid_dir
[10698]	1063	clean_valid_dir
[4990]	1064	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	1065	NPROC=32
[4990]	1066	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1067	cd ${EXE_DIR}
[9518]	1068	set_namelist namelist_cfg cn_exp \"SAS_84\"
[4990]	1069	set_namelist namelist_cfg nn_it000 1
[13754]	1070	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	1071	set_namelist namelist_cfg jpni 8
	1072	set_namelist namelist_cfg jpnj 4
[10573]	1073	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13755]	1074	if [ ${USING_XIOS_RRW} == "yes" ]
	1075	then
[12999]	1076	set_namelist namelist_cfg nn_wxios 1
	1077	fi
[4990]	1078	if [ ${USING_MPMD} == "yes" ] ; then
	1079	set_xio_using_server iodef.xml true
	1080	else
	1081	set_xio_using_server iodef.xml false
	1082	fi
	1083	cd ${SETTE_DIR}
[10755]	1084	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1085	cd ${SETTE_DIR}
	1086	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1087
	1088	fi
	1089
[9518]	1090
	1091	# --------------
[9663]	1092	# ORCA2_ICE_OBS
[9518]	1093	# --------------
[4990]	1094	## Test assimilation interface code, OBS and ASM for reproducibility
	1095	## Restartability not tested (ASM code not restartable while increments are being applied)
[10747]	1096	if [ ${config} == "ORCA2_ICE_OBS" ] ; then
[9518]	1097	## Reproducibility tests
[13754]	1098	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	1099	then
	1100	ITEND=16 # 1 day
	1101	else
	1102	ITEND=80 # 5 days
	1103	fi
[7646]	1104	export TEST_NAME="REPRO_4_8"
[9658]	1105	cd ${MAIN_DIR}
[12569]	1106	#
	1107	# syncronisation if target directory/file exist (not done by makenemo)
	1108	. ${SETTE_DIR}/all_functions.sh
	1109	sync_config ORCA2_ICE_PISCES ORCA2_ICE_OBS_ST 'cfgs'
	1110	clean_config ORCA2_ICE_PISCES ORCA2_ICE_OBS_ST 'cfgs'
	1111	#
[13754]	1112	. ./makenemo -m ${CMP_NAM} -n ORCA2_ICE_OBS_ST -r ORCA2_ICE_PISCES -d "OCE ICE" -j 8 add_key "key_asminc ${ADD_KEYS}" del_key "key_top ${DEL_KEYS}"
[4990]	1113	cd ${SETTE_DIR}
	1114	. ./param.cfg
	1115	. ./all_functions.sh
	1116	. ./prepare_exe_dir.sh
[10755]	1117	set_valid_dir
[10698]	1118	clean_valid_dir
[4990]	1119	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	1120	NPROC=32
[4990]	1121	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1122	cd ${EXE_DIR}
[9019]	1123	set_namelist namelist_cfg cn_exp \"O2L3OBS_48\"
[4990]	1124	set_namelist namelist_cfg nn_it000 1
[13754]	1125	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	1126	set_namelist namelist_cfg ln_read_cfg .true.
[4990]	1127	set_namelist namelist_cfg jpni 4
[7646]	1128	set_namelist namelist_cfg jpnj 8
[10573]	1129	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	1130	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[6140]	1131	set_namelist namelist_cfg ln_diaobs .true.
[4990]	1132	set_namelist namelist_cfg ln_t3d .true.
	1133	set_namelist namelist_cfg ln_s3d .true.
	1134	set_namelist namelist_cfg ln_sst .true.
	1135	set_namelist namelist_cfg ln_sla .true.
[6140]	1136	set_namelist namelist_cfg ln_sic .true.
	1137	set_namelist namelist_cfg ln_vel3d .true.
[4990]	1138	set_namelist namelist_cfg ln_bkgwri .true.
	1139	set_namelist namelist_cfg ln_trainc .true.
	1140	set_namelist namelist_cfg ln_dyninc .true.
	1141	set_namelist namelist_cfg ln_sshinc .true.
	1142	set_namelist namelist_cfg ln_asmiau .true.
[9663]	1143	#remove all useless options for pisces (due to ORCA2_ICE_PISCES reference configuration)
[7722]	1144	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	1145	set_namelist namelist_top_cfg ln_trcbc .false.
[7722]	1146	# put ln_ironsed, ln_river, ln_ndepo, ln_dust to false
	1147	# if not you need input files, and for tests is not necessary
	1148	set_namelist namelist_pisces_cfg ln_varpar .false.
	1149	set_namelist namelist_pisces_cfg ln_ironsed .false.
	1150	set_namelist namelist_pisces_cfg ln_ironice .false.
	1151	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[4990]	1152	if [ ${USING_MPMD} == "yes" ] ; then
	1153	set_xio_using_server iodef.xml true
	1154	else
	1155	set_xio_using_server iodef.xml false
	1156	fi
	1157	cd ${SETTE_DIR}
[10755]	1158	. ./prepare_job.sh input_ORCA2_ICE_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1159	cd ${SETTE_DIR}
	1160	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1161
	1162	cd ${SETTE_DIR}
[7646]	1163	export TEST_NAME="REPRO_8_4"
[4990]	1164	. ./prepare_exe_dir.sh
[10755]	1165	set_valid_dir
[10698]	1166	clean_valid_dir
[4990]	1167	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	1168	NPROC=32
[4990]	1169	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1170	cd ${EXE_DIR}
[9019]	1171	set_namelist namelist_cfg cn_exp \"O2L3OBS_84\"
[4990]	1172	set_namelist namelist_cfg nn_it000 1
[13754]	1173	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	1174	set_namelist namelist_cfg ln_read_cfg .true.
	1175	set_namelist namelist_cfg jpni 8
	1176	set_namelist namelist_cfg jpnj 4
[10573]	1177	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	1178	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[6140]	1179	set_namelist namelist_cfg ln_diaobs .true.
[4990]	1180	set_namelist namelist_cfg ln_t3d .true.
	1181	set_namelist namelist_cfg ln_s3d .true.
	1182	set_namelist namelist_cfg ln_sst .true.
	1183	set_namelist namelist_cfg ln_sla .true.
[6140]	1184	set_namelist namelist_cfg ln_sic .true.
	1185	set_namelist namelist_cfg ln_vel3d .true.
[4990]	1186	set_namelist namelist_cfg ln_bkgwri .true.
	1187	set_namelist namelist_cfg ln_trainc .true.
	1188	set_namelist namelist_cfg ln_dyninc .true.
	1189	set_namelist namelist_cfg ln_sshinc .true.
	1190	set_namelist namelist_cfg ln_asmiau .true.
[9663]	1191	#remove all useless options for pisces (due to ORCA2_ICE_PISCES reference configuration)
[7722]	1192	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	1193	set_namelist namelist_top_cfg ln_trcbc .false.
[7722]	1194	# put ln_ironsed, ln_river, ln_ndepo, ln_dust to false
	1195	# if not you need input files, and for tests is not necessary
	1196	set_namelist namelist_pisces_cfg ln_varpar .false.
	1197	set_namelist namelist_pisces_cfg ln_ironsed .false.
	1198	set_namelist namelist_pisces_cfg ln_ironice .false.
	1199	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[12999]	1200	if [ ${USING_XIOS_RRW} == "yes" ]
	1201	then
	1202	set_namelist namelist_cfg nn_wxios 1
	1203	fi
[4990]	1204	if [ ${USING_MPMD} == "yes" ] ; then
	1205	set_xio_using_server iodef.xml true
	1206	else
	1207	set_xio_using_server iodef.xml false
	1208	fi
	1209	cd ${SETTE_DIR}
[10755]	1210	. ./prepare_job.sh input_ORCA2_ICE_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1211	cd ${SETTE_DIR}
	1212	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1213	fi
[5589]	1214
[9483]	1215	# ------------
[9663]	1216	# AGRIF ICE
[9483]	1217	# -----------
[10747]	1218	if [ ${config} == "AGRIF" ] ; then
[9518]	1219	## Restartability tests
[13754]	1220	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	1221	then
	1222	ITEND=4 # 6h
	1223	else
	1224	ITEND=20 # 1d and 6h
	1225	fi
	1226	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
	1227	ITRST_1=$( printf "%08d" $(( ${ITEND} / 2 )) )
	1228	ITRST_2=$( printf "%08d" $(( ${ITEND} * 4 / 2 )) )
	1229	ITRST_3=$( printf "%08d" $(( ${ITEND} * 4 * 3 / 2 )) )
[9483]	1230	export TEST_NAME="LONG"
[9658]	1231	cd ${MAIN_DIR}
[12569]	1232	#
	1233	# syncronisation if target directory/file exist (not done by makenemo)
	1234	. ${SETTE_DIR}/all_functions.sh
	1235	sync_config AGRIF_DEMO AGRIF_DEMO_ST 'cfgs'
	1236	clean_config AGRIF_DEMO AGRIF_DEMO_ST 'cfgs'
	1237	#
[11497]	1238	. ./makenemo -m ${CMP_NAM} -n AGRIF_DEMO_ST -r AGRIF_DEMO -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9483]	1239	cd ${SETTE_DIR}
	1240	. ./param.cfg
	1241	. ./all_functions.sh
	1242	. ./prepare_exe_dir.sh
[10755]	1243	set_valid_dir
[10698]	1244	clean_valid_dir
[9483]	1245	JOB_FILE=${EXE_DIR}/run_job.sh
[9776]	1246	NPROC=16
[9483]	1247	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1248	cd ${EXE_DIR}
	1249	set_namelist namelist_cfg cn_exp \"AGRIF_LONG\"
	1250	set_namelist namelist_cfg nn_it000 1
[13754]	1251	set_namelist namelist_cfg nn_itend ${ITEND}
	1252	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10573]	1253	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1254	set_namelist 1_namelist_cfg cn_exp \"AGRIF_LONG\"
	1255	set_namelist 1_namelist_cfg nn_it000 1
[13754]	1256	set_namelist 1_namelist_cfg nn_itend ${ITEND}
	1257	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10573]	1258	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1259	set_namelist 2_namelist_cfg cn_exp \"AGRIF_LONG\"
	1260	set_namelist 2_namelist_cfg nn_it000 1
[13754]	1261	set_namelist 2_namelist_cfg nn_itend $(( ${ITEND} * 4 ))
	1262	set_namelist 2_namelist_cfg nn_stock $(( ${ITEND} * 4 / 2 ))
[10573]	1263	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[9776]	1264	set_namelist 3_namelist_cfg cn_exp \"AGRIF_LONG\"
	1265	set_namelist 3_namelist_cfg nn_it000 1
[13754]	1266	set_namelist 3_namelist_cfg nn_itend $(( ${ITEND} * 4 * 3 ))
	1267	set_namelist 3_namelist_cfg nn_stock $(( ${ITEND} * 4 * 3 / 2 ))
[10573]	1268	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[13755]	1269	if [ ${USING_XIOS_RRW} == "yes" ]
	1270	then
	1271	set_namelist namelist_cfg nn_wxios 1
	1272	fi
[9483]	1273	if [ ${USING_MPMD} == "yes" ] ; then
	1274	set_xio_using_server iodef.xml true
	1275	else
	1276	set_xio_using_server iodef.xml false
	1277	fi
	1278	cd ${SETTE_DIR}
[10755]	1279	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1280
	1281	cd ${SETTE_DIR}
	1282	export TEST_NAME="SHORT"
	1283	. ./prepare_exe_dir.sh
[10755]	1284	set_valid_dir
[10698]	1285	clean_valid_dir
[9483]	1286	cd ${EXE_DIR}
	1287	set_namelist namelist_cfg cn_exp \"AGRIF_SHORT\"
[13754]	1288	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	1289	set_namelist namelist_cfg nn_itend ${ITEND}
	1290	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10573]	1291	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1292	set_namelist namelist_cfg ln_rstart .true.
	1293	set_namelist namelist_cfg nn_rstctl 2
	1294	set_namelist 1_namelist_cfg cn_exp \"AGRIF_SHORT\"
[13754]	1295	set_namelist 1_namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	1296	set_namelist 1_namelist_cfg nn_itend ${ITEND}
	1297	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10573]	1298	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1299	set_namelist 1_namelist_cfg ln_rstart .true.
	1300	set_namelist 1_namelist_cfg nn_rstctl 2
	1301	set_namelist 2_namelist_cfg cn_exp \"AGRIF_SHORT\"
[13754]	1302	set_namelist 2_namelist_cfg nn_it000 $(( ${ITEND} * 4 / 2 + 1 ))
	1303	set_namelist 2_namelist_cfg nn_itend $(( ${ITEND} * 4 ))
	1304	set_namelist 2_namelist_cfg nn_stock $(( ${ITEND} * 4 / 2 ))
[10573]	1305	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1306	set_namelist 2_namelist_cfg ln_rstart .true.
	1307	set_namelist 2_namelist_cfg nn_rstctl 2
[9776]	1308	set_namelist 3_namelist_cfg cn_exp \"AGRIF_SHORT\"
[13754]	1309	set_namelist 3_namelist_cfg nn_it000 $(( ${ITEND} * 4 * 3 / 2 + 1 ))
	1310	set_namelist 3_namelist_cfg nn_itend $(( ${ITEND} * 4 * 3 ))
	1311	set_namelist 3_namelist_cfg nn_stock $(( ${ITEND} * 4 * 3 / 2 ))
[10573]	1312	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9776]	1313	set_namelist 3_namelist_cfg ln_rstart .true.
	1314	set_namelist 3_namelist_cfg nn_rstctl 2
[13754]	1315	set_namelist namelist_cfg cn_ocerst_in \"AGRIF_LONG_${ITRST}_restart\"
	1316	set_namelist namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_${ITRST}_restart_ice\"
	1317	set_namelist 1_namelist_cfg cn_ocerst_in \"AGRIF_LONG_${ITRST_1}_restart\"
	1318	set_namelist 1_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_${ITRST_1}_restart_ice\"
	1319	set_namelist 2_namelist_cfg cn_ocerst_in \"AGRIF_LONG_${ITRST_2}_restart\"
	1320	set_namelist 2_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_${ITRST_2}_restart_ice\"
	1321	set_namelist 3_namelist_cfg cn_ocerst_in \"AGRIF_LONG_${ITRST_3}_restart\"
	1322	set_namelist 3_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_${ITRST_3}_restart_ice\"
[13755]	1323	if [ ${USING_XIOS_RRW} == "yes" ]
	1324	then
	1325	set_namelist namelist_cfg nn_wxios 1
	1326	set_namelist namelist_cfg ln_xios_read .true.
	1327	fi
[9483]	1328
[13755]	1329	if [ ${USING_XIOS_RRW} == "yes" ]
	1330	then
	1331	ln -sf ../LONG/AGRIF_LONG_${ITRST}_restart.nc .
	1332	ln -sf ../LONG/AGRIF_LONG_${ITRST}_restart_ice.nc .
	1333	ln -sf ../LONG/1_AGRIF_LONG_${ITRST_1}_restart.nc .
	1334	ln -sf ../LONG/1_AGRIF_LONG_${ITRST_1}_restart_ice.nc .
	1335	ln -sf ../LONG/2_AGRIF_LONG_${ITRST_2}_restart.nc .
	1336	ln -sf ../LONG/2_AGRIF_LONG_${ITRST_2}_restart_ice.nc .
	1337	ln -sf ../LONG/3_AGRIF_LONG_${ITRST_3}_restart.nc .
	1338	ln -sf ../LONG/3_AGRIF_LONG_${ITRST_3}_restart_ice.nc .
	1339	else
	1340	for (( i=1; i<=$NPROC; i++)) ; do
	1341	L_NPROC=$(( $i - 1 ))
	1342	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	1343	ln -sf ../LONG/AGRIF_LONG_${ITRST}_restart_${L_NPROC}.nc .
	1344	ln -sf ../LONG/AGRIF_LONG_${ITRST}_restart_ice_${L_NPROC}.nc .
	1345	ln -sf ../LONG/1_AGRIF_LONG_${ITRST_1}_restart_${L_NPROC}.nc .
	1346	ln -sf ../LONG/1_AGRIF_LONG_${ITRST_1}_restart_ice_${L_NPROC}.nc .
	1347	ln -sf ../LONG/2_AGRIF_LONG_${ITRST_2}_restart_${L_NPROC}.nc .
	1348	ln -sf ../LONG/2_AGRIF_LONG_${ITRST_2}_restart_ice_${L_NPROC}.nc .
	1349	ln -sf ../LONG/3_AGRIF_LONG_${ITRST_3}_restart_${L_NPROC}.nc .
	1350	ln -sf ../LONG/3_AGRIF_LONG_${ITRST_3}_restart_ice_${L_NPROC}.nc .
	1351	done
	1352	fi
[9483]	1353	if [ ${USING_MPMD} == "yes" ] ; then
	1354	set_xio_using_server iodef.xml true
	1355	else
	1356	set_xio_using_server iodef.xml false
	1357	fi
	1358	cd ${SETTE_DIR}
[10755]	1359	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1360	cd ${SETTE_DIR}
	1361	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1362
[9518]	1363	## Reproducibility tests
[11800]	1364	export TEST_NAME="REPRO_2_8"
[9658]	1365	cd ${MAIN_DIR}
[9483]	1366	cd ${SETTE_DIR}
	1367	. ./param.cfg
	1368	. ./all_functions.sh
	1369	. ./prepare_exe_dir.sh
[10755]	1370	set_valid_dir
[10698]	1371	clean_valid_dir
[9483]	1372	JOB_FILE=${EXE_DIR}/run_job.sh
[11800]	1373	NPROC=16
[9483]	1374	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1375	cd ${EXE_DIR}
[11800]	1376	set_namelist namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1377	set_namelist namelist_cfg nn_it000 1
[13754]	1378	set_namelist namelist_cfg nn_itend ${ITEND}
[11800]	1379	set_namelist namelist_cfg jpni 2
[9483]	1380	set_namelist namelist_cfg jpnj 8
[10573]	1381	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1382	set_namelist 1_namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1383	set_namelist 1_namelist_cfg nn_it000 1
[13754]	1384	set_namelist 1_namelist_cfg nn_itend ${ITEND}
[11800]	1385	set_namelist 1_namelist_cfg jpni 2
[9483]	1386	set_namelist 1_namelist_cfg jpnj 8
[10573]	1387	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1388	set_namelist 2_namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1389	set_namelist 2_namelist_cfg nn_it000 1
[13754]	1390	set_namelist 2_namelist_cfg nn_itend $(( ${ITEND} * 4 ))
[11800]	1391	set_namelist 2_namelist_cfg jpni 2
[9483]	1392	set_namelist 2_namelist_cfg jpnj 8
[10573]	1393	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1394	set_namelist 3_namelist_cfg cn_exp \"AGRIF_28\"
[9776]	1395	set_namelist 3_namelist_cfg nn_it000 1
[13754]	1396	set_namelist 3_namelist_cfg nn_itend $(( ${ITEND} * 4 * 3 ))
[11800]	1397	set_namelist 3_namelist_cfg jpni 2
[9776]	1398	set_namelist 3_namelist_cfg jpnj 8
[10573]	1399	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1400
[13755]	1401	if [ ${USING_XIOS_RRW} == "yes" ]
	1402	then
	1403	set_namelist namelist_cfg nn_wxios 1
	1404	fi
	1405
[9483]	1406	if [ ${USING_MPMD} == "yes" ] ; then
	1407	set_xio_using_server iodef.xml true
	1408	else
	1409	set_xio_using_server iodef.xml false
	1410	fi
	1411	cd ${SETTE_DIR}
[10755]	1412	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1413	cd ${SETTE_DIR}
	1414	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1415
	1416	cd ${SETTE_DIR}
[11800]	1417	export TEST_NAME="REPRO_4_4"
[9483]	1418	. ./prepare_exe_dir.sh
[10755]	1419	set_valid_dir
[10698]	1420	clean_valid_dir
[9483]	1421	JOB_FILE=${EXE_DIR}/run_job.sh
[11800]	1422	NPROC=16
[9483]	1423	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1424	cd ${EXE_DIR}
[11800]	1425	set_namelist namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1426	set_namelist namelist_cfg nn_it000 1
[13754]	1427	set_namelist namelist_cfg nn_itend ${ITEND}
[11800]	1428	set_namelist namelist_cfg jpni 4
[9483]	1429	set_namelist namelist_cfg jpnj 4
[10573]	1430	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1431	set_namelist 1_namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1432	set_namelist 1_namelist_cfg nn_it000 1
[13754]	1433	set_namelist 1_namelist_cfg nn_itend ${ITEND}
[11800]	1434	set_namelist 1_namelist_cfg jpni 4
[9483]	1435	set_namelist 1_namelist_cfg jpnj 4
[10573]	1436	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1437	set_namelist 2_namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1438	set_namelist 2_namelist_cfg nn_it000 1
[13754]	1439	set_namelist 2_namelist_cfg nn_itend $(( ${ITEND} * 4 ))
[11800]	1440	set_namelist 2_namelist_cfg jpni 4
[9483]	1441	set_namelist 2_namelist_cfg jpnj 4
[10573]	1442	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[12428]	1443	set_namelist 3_namelist_cfg cn_exp \"AGRIF_44\"
[9776]	1444	set_namelist 3_namelist_cfg nn_it000 1
[13754]	1445	set_namelist 3_namelist_cfg nn_itend $(( ${ITEND} * 4 * 3 ))
[11800]	1446	set_namelist 3_namelist_cfg jpni 4
[9776]	1447	set_namelist 3_namelist_cfg jpnj 4
[10573]	1448	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1449	if [ ${USING_MPMD} == "yes" ] ; then
	1450	set_xio_using_server iodef.xml true
	1451	else
	1452	set_xio_using_server iodef.xml false
	1453	fi
	1454	cd ${SETTE_DIR}
[10755]	1455	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1456	cd ${SETTE_DIR}
	1457	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1458
[9507]	1459	## test code corruption with AGRIF (phase 1) ==> Compile with key_agrif but run with no zoom
[13754]	1460	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	1461	then
	1462	ITEND=16 # 1d
	1463	else
	1464	ITEND=150 # 5d and 9h
	1465	fi
[9507]	1466	export TEST_NAME="ORCA2"
[9658]	1467	cd ${MAIN_DIR}
[9483]	1468	cd ${SETTE_DIR}
	1469	. ./param.cfg
	1470	. ./all_functions.sh
	1471	. ./prepare_exe_dir.sh
[10755]	1472	set_valid_dir
[10698]	1473	clean_valid_dir
[9483]	1474	JOB_FILE=${EXE_DIR}/run_job.sh
	1475	NPROC=32
	1476	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1477	cd ${EXE_DIR}
[9507]	1478	set_namelist namelist_cfg cn_exp \"ORCA2\"
[9483]	1479	set_namelist namelist_cfg nn_it000 1
[13754]	1480	set_namelist namelist_cfg nn_itend ${ITEND}
[10573]	1481	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9507]	1482
[9483]	1483	# Set the number of fine grids to zero:
	1484	sed -i "1s/.*/0/" ${EXE_DIR}/AGRIF_FixedGrids.in
	1485
	1486	if [ ${USING_MPMD} == "yes" ] ; then
	1487	set_xio_using_server iodef.xml true
	1488	else
	1489	set_xio_using_server iodef.xml false
	1490	fi
	1491	cd ${SETTE_DIR}
[10755]	1492	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1493	cd ${SETTE_DIR}
	1494	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1495
	1496	fi
	1497
[9525]	1498
[9776]	1499	## test code corruption with AGRIF (phase 2) ==> Compile without key_agrif (to be compared with AGRIF_DEMO_ST/ORCA2)
[10747]	1500	if [ ${config} == "AGRIF" ] ; then
[9507]	1501	export TEST_NAME="ORCA2"
[9658]	1502	cd ${MAIN_DIR}
[12569]	1503	#
	1504	# syncronisation if target directory/file exist (not done by makenemo)
	1505	. ${SETTE_DIR}/all_functions.sh
	1506	sync_config AGRIF_DEMO AGRIF_DEMO_NOAGRIF_ST 'cfgs'
	1507	clean_config AGRIF_DEMO AGRIF_DEMO_NOAGRIF_ST 'cfgs'
	1508	#
[13754]	1509	. ./makenemo -m ${CMP_NAM} -n AGRIF_DEMO_NOAGRIF_ST -r AGRIF_DEMO -j 8 add_key "${ADD_KEYS}" del_key "key_agrif ${DEL_KEYS}"
[9483]	1510	cd ${SETTE_DIR}
	1511	. ./param.cfg
	1512	. ./all_functions.sh
	1513	. ./prepare_exe_dir.sh
[10755]	1514	set_valid_dir
[10698]	1515	clean_valid_dir
[9483]	1516	JOB_FILE=${EXE_DIR}/run_job.sh
	1517	NPROC=32
	1518	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1519	cd ${EXE_DIR}
[9507]	1520	set_namelist namelist_cfg cn_exp \"ORCA2\"
[9483]	1521	set_namelist namelist_cfg nn_it000 1
[13754]	1522	set_namelist namelist_cfg nn_itend ${ITEND}
[10573]	1523	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1524	#
	1525	if [ ${USING_MPMD} == "yes" ] ; then
	1526	set_xio_using_server iodef.xml true
	1527	else
	1528	set_xio_using_server iodef.xml false
	1529	fi
	1530	cd ${SETTE_DIR}
[10755]	1531	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1532	cd ${SETTE_DIR}
	1533	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1534
	1535	fi
	1536
[9553]	1537	# -------
[13754]	1538	# WED025
[9553]	1539	# -------
[13754]	1540	if [ ${config} == "WED025" ] ; then
[9553]	1541	## Restartability tests
[13754]	1542	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	1543	then
	1544	ITEND=12 # 4h
	1545	else
	1546	ITEND=720 # 10 days
	1547	fi
	1548	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[9553]	1549	export TEST_NAME="LONG"
[9658]	1550	cd ${MAIN_DIR}
[12569]	1551	#
	1552	# syncronisation if target directory/file exist (not done by makenemo)
	1553	. ${SETTE_DIR}/all_functions.sh
[13754]	1554	sync_config WED025 WED025_ST 'cfgs'
	1555	clean_config WED025 WED025_ST 'cfgs'
[12569]	1556	#
[13754]	1557	. ./makenemo -m ${CMP_NAM} -n WED025_ST -r WED025 -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9553]	1558	cd ${SETTE_DIR}
	1559	. ./param.cfg
	1560	. ./all_functions.sh
	1561	. ./prepare_exe_dir.sh
[10755]	1562	set_valid_dir
[10698]	1563	clean_valid_dir
[9553]	1564	JOB_FILE=${EXE_DIR}/run_job.sh
	1565	NPROC=32
	1566	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1567	cd ${EXE_DIR}
[13754]	1568	set_namelist namelist_cfg cn_exp \"WED025_LONG\"
[9553]	1569	set_namelist namelist_cfg nn_it000 1
[13754]	1570	set_namelist namelist_cfg nn_itend ${ITEND}
	1571	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
	1572	set_namelist namelist_cfg nn_date0 20000115
[9553]	1573	set_namelist namelist_cfg jpni 4
	1574	set_namelist namelist_cfg jpnj 8
[10573]	1575	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9744]	1576	#set_namelist namelist_ice_cfg ln_icediachk .true.
[12999]	1577	if [ ${USING_XIOS_RRW} == "yes" ]
	1578	then
	1579	set_namelist namelist_cfg nn_wxios 1
	1580	fi
[9553]	1581	if [ ${USING_MPMD} == "yes" ] ; then
	1582	set_xio_using_server iodef.xml true
	1583	else
	1584	set_xio_using_server iodef.xml false
	1585	fi
	1586	cd ${SETTE_DIR}
[13754]	1587	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1588
	1589	cd ${SETTE_DIR}
	1590	export TEST_NAME="SHORT"
	1591	. ./prepare_exe_dir.sh
[10755]	1592	set_valid_dir
[10698]	1593	clean_valid_dir
[9553]	1594	cd ${EXE_DIR}
[13754]	1595	set_namelist namelist_cfg cn_exp \"WED025_SHORT\"
	1596	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	1597	set_namelist namelist_cfg nn_itend ${ITEND}
	1598	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[9553]	1599	set_namelist namelist_cfg ln_rstart .true.
	1600	set_namelist namelist_cfg nn_rstctl 2
	1601	set_namelist namelist_cfg jpni 4
	1602	set_namelist namelist_cfg jpnj 8
[10573]	1603	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13754]	1604	set_namelist namelist_cfg cn_ocerst_in \"WED025_LONG_${ITRST}_restart\"
	1605	set_namelist namelist_ice_cfg cn_icerst_in \"WED025_LONG_${ITRST}_restart_ice\"
[13755]	1606	if [ ${USING_XIOS_RRW} == "yes" ]
	1607	then
	1608	set_namelist namelist_cfg nn_wxios 1
	1609	set_namelist namelist_cfg ln_xios_read .true.
	1610	fi
	1611	if [ ${USING_XIOS_RRW} == "yes" ]
	1612	then
	1613	ln -sf ../LONG/WED025_LONG_${ITRST}_restart.nc .
	1614	ln -sf ../LONG/WED025_LONG_${ITRST}_restart_ice.nc .
	1615	else
	1616	for (( i=1; i<=$NPROC; i++)) ; do
	1617	L_NPROC=$(( $i - 1 ))
	1618	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	1619	ln -sf ../LONG/WED025_LONG_${ITRST}_restart_${L_NPROC}.nc .
	1620	ln -sf ../LONG/WED025_LONG_${ITRST}_restart_ice_${L_NPROC}.nc .
	1621	done
	1622	fi
[9553]	1623	if [ ${USING_MPMD} == "yes" ] ; then
	1624	set_xio_using_server iodef.xml true
	1625	else
	1626	set_xio_using_server iodef.xml false
	1627	fi
	1628	cd ${SETTE_DIR}
[13754]	1629	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1630	cd ${SETTE_DIR}
	1631	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1632
	1633	## Reproducibility tests
[13754]	1634	export TEST_NAME="REPRO_5_6"
[9658]	1635	cd ${MAIN_DIR}
[9553]	1636	cd ${SETTE_DIR}
	1637	. ./param.cfg
	1638	. ./all_functions.sh
	1639	. ./prepare_exe_dir.sh
[10755]	1640	set_valid_dir
[10698]	1641	clean_valid_dir
[9553]	1642	JOB_FILE=${EXE_DIR}/run_job.sh
	1643	NPROC=32
	1644	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1645	cd ${EXE_DIR}
[13754]	1646	set_namelist namelist_cfg cn_exp \"WED025_56\"
[9553]	1647	set_namelist namelist_cfg nn_it000 1
[13754]	1648	set_namelist namelist_cfg nn_itend ${ITEND}
	1649	set_namelist namelist_cfg nn_date0 20000115
	1650	set_namelist namelist_cfg jpni 6
	1651	set_namelist namelist_cfg jpnj 7
[10573]	1652	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9553]	1653	if [ ${USING_MPMD} == "yes" ] ; then
	1654	set_xio_using_server iodef.xml true
	1655	else
	1656	set_xio_using_server iodef.xml false
	1657	fi
	1658	cd ${SETTE_DIR}
[13754]	1659	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1660	cd ${SETTE_DIR}
	1661	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1662
	1663	cd ${SETTE_DIR}
	1664	export TEST_NAME="REPRO_8_4"
	1665	. ./prepare_exe_dir.sh
[10755]	1666	set_valid_dir
[10698]	1667	clean_valid_dir
[9553]	1668	JOB_FILE=${EXE_DIR}/run_job.sh
	1669	NPROC=32
	1670	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1671	cd ${EXE_DIR}
[13754]	1672	set_namelist namelist_cfg cn_exp \"WED025_84\"
[9553]	1673	set_namelist namelist_cfg nn_it000 1
[13754]	1674	set_namelist namelist_cfg nn_itend ${ITEND}
	1675	set_namelist namelist_cfg nn_date0 20000115
[9553]	1676	set_namelist namelist_cfg jpni 8
	1677	set_namelist namelist_cfg jpnj 4
[10573]	1678	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13755]	1679	if [ ${USING_XIOS_RRW} == "yes" ]
	1680	then
[12999]	1681	set_namelist namelist_cfg nn_wxios 1
	1682	fi
[9553]	1683	if [ ${USING_MPMD} == "yes" ] ; then
	1684	set_xio_using_server iodef.xml true
	1685	else
	1686	set_xio_using_server iodef.xml false
	1687	fi
	1688	cd ${SETTE_DIR}
[13754]	1689	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1690	cd ${SETTE_DIR}
	1691	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1692	fi
	1693
	1694
[3520]	1695	done

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source: utils/CI/r12931_sette_ticket2462/sette_reference-configurations.sh @ 13900

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