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sette_reference-configurations.sh in utils/CI/sette – NEMO

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source: utils/CI/sette/sette_reference-configurations.sh @ 14244

Last change on this file since 14244 was 14244, checked in by smasson, 4 years ago
sette: merge with sette_wave
Property svn:executable set to ``*
File size: 64.1 KB

Rev	Line
[3520]	1	#!/bin/bash
[3708]	2	############################################################
[3520]	3	# Author : Simona Flavoni for NEMO
[4245]	4	# Contact: sflod@locean-ipsl.upmc.fr
	5	# 2013 : A.C. Coward added options for testing with XIOS in dettached mode
[3520]	6	#
	7	# sette.sh : principal script of SET TEsts for NEMO (SETTE)
	8	# ----------------------------------------------------------------------
	9	# NEMO/SETTE , NEMO Consortium (2010)
	10	# Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
	11	# ----------------------------------------------------------------------
	12	#
	13	#############################################################
[7744]	14	#set -vx
[3520]	15	set -o posix
	16	#set -u
	17	#set -e
[4245]	18	# ===========
[3520]	19	# DESCRIPTION
	20	# ===========
	21	#
	22	# Variables to be checked by user:
	23	#
[4245]	24	# COMPILER : name of compiler as defined in NEMOGCM/ARCH directory
	25	# BATCH_COMMAND_PAR : name of the command for submitting parallel batch jobs
	26	# BATCH_COMMAND_SEQ : name of the command for submitting sequential batch jobs
	27	# INTERACT_FLAG : flag to run in interactive mode "yes"
	28	# to run in batch mode "no"
	29	# MPIRUN_FLAG : flag to run in parallel (MPI) "yes"
	30	# to run in sequential mode (NB_PROC = 1) "no"
[14244]	31	# USING_XIOS : flag to control the activation of key_xios
	32	# "yes" to compile using key_xios and link to the external XIOS library
	33	# "no" to compile without key_xios and link to the old IOIPSL library
[4245]	34	# USING_MPMD : flag to control the use of stand-alone IO servers
	35	# requires USING_XIOS="yes"
	36	# "yes" to run in MPMD (detached) mode with stand-alone IO servers
	37	# "no" to run in SPMD (attached) mode without separate IO servers
[13790]	38	# SETTE_TIMING : flag to control the production of timing.output
	39	# requires SETTE_TIMING="yes"
	40
[4245]	41	# NUM_XIOSERVERS : number of stand-alone IO servers to employ
	42	# set to zero if USING_MPMD="no"
[14244]	43	# USING_MPI3 : flag to control the activation of key_mpi3
	44	# "yes" to use the MPI3 neighbourhood collectives for halo exchange
	45	# "no" to use standard point-to-point communications for halo exchange
	46	# USING_LOOP_FUSION : flag to control the activation of key_loop_fusion
	47	# "yes" to use the loop fusion adv routines when halo = 2
	48	# "no" to use standard adv routines
[3520]	49	#
	50	# Principal script is sette.sh, that calls
	51	#
[4245]	52	# makenemo : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe
[9576]	53	# and links to nemo in ${CONFIG_NAME}/EXP00)
[3520]	54	#
	55	# param.cfg : sets and loads following directories:
[13568]	56	# This will have been run by the parent sette.sh and values exported here
[3520]	57	#
[4245]	58	# FORCING_DIR : is the directory for forcing files (tarfile)
	59	# INPUT_DIR : is the directory for input files storing
	60	# TMPDIR : is the temporary directory (if needed)
[3520]	61	# NEMO_VALIDATION_DIR : is the validation directory
	62	#
	63	# (NOTE: this file is the same for all configrations to be tested with sette)
	64	#
[4245]	65	# all_functions.sh : loads functions used by sette (note: new functions can be added here)
	66	# set_namelist : function declared in all_functions that sets namelist parameters
	67	# post_test_tidyup : creates validation storage directory and copies required output files
[9019]	68	# (run.stat and ocean.output) in it after execution of test.
[3520]	69	#
[4245]	70	# VALIDATION tree is:
[3520]	71	#
	72	# NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
	73	#
	74	# prepare_exe_dir.sh : defines and creates directory where the test is executed
[4245]	75	# execution directory takes name of TEST_NAME defined for every test
	76	# in sette.sh. (each test in executed in its own directory)
[3520]	77	#
[10755]	78	# set_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	79	#
[10698]	80	# clean_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	81	# ( not doing it could lead to false positive )
	82	#
[4245]	83	# prepare_job.sh : to generate the script run_job.sh
[3520]	84	#
[4245]	85	# fcm_job.sh : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
	86	# see sette.sh and BATCH_TEMPLATE directory
[3520]	87	#
[4245]	88	# NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which
	89	# can be found paths to the input tar file)
	90	# NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR}
	91	# directory
	92	# NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists
	93	# remain in ${NEW_CONF}/EXP00
[3520]	94	#
[4245]	95	# NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of
	96	# executed commands
[3520]	97	#
[4245]	98	# NOTE: if sette.sh is stopped in output.sette there is written the last command
	99	# executed by sette.sh
[3520]	100	#
[4245]	101	# example use: ./sette.sh
	102	#########################################################################################
[3520]	103	#
[10687]	104	# LOAD param value
[10717]	105	SETTE_DIR=$(cd $(dirname "$0"); pwd)
	106	MAIN_DIR=$(dirname $SETTE_DIR)
[7743]	107
[10687]	108	export BATCH_COMMAND_PAR=${BATCH_CMD}
	109	export BATCH_COMMAND_SEQ=${BATCH_CMD}
[4990]	110	export INTERACT_FLAG="no"
[4245]	111	export MPIRUN_FLAG="yes"
[9941]	112	export USING_ICEBERGS="yes"
[13568]	113	export USING_EXTRA_HALO="no"
[3520]	114	#
[13784]	115	export ADD_KEYS=""
	116	export DEL_KEYS=""
[4245]	117	if [ ${USING_XIOS} == "yes" ]
	118	then
[14244]	119	export ADD_KEYS="${ADD_KEYS} key_xios"
[13784]	120	else
[14244]	121	export DEL_KEYS="${DEL_KEYS} key_xios"
[4245]	122	fi
[3520]	123	#
[10687]	124	if [ ${ADD_NOSIGNEDZERO} == "yes" ]
	125	then
[13784]	126	export ADD_KEYS="${ADD_KEYS} key_nosignedzero"
	127	else
	128	export DEL_KEYS="${DEL_KEYS} key_nosignedzero"
[10687]	129	fi
	130	#
[14244]	131	if [ ${USING_MPI3} == "yes" ]
	132	then
	133	export ADD_KEYS="${ADD_KEYS} key_mpi3"
	134	fi
	135	#
	136	if [ ${USING_LOOP_FUSION} == "yes" ]
	137	then
	138	export ADD_KEYS="${ADD_KEYS} key_loop_fusion"
	139	fi
	140	#
	141	if [ ${NOT_USING_QCO} == "yes" ]
	142	then
	143	export DEL_KEYS="${DEL_KEYS} key_qco key_linssh"
	144	fi
	145	#
[4245]	146	# Settings which control the use of stand alone servers (only relevant if using xios)
[3520]	147	#
[10632]	148	export NUM_XIOSERVERS=4
[11140]	149	export JOB_PREFIX=${JOB_PREFIX_MPMD}
[3520]	150	#
[4245]	151	if [ ${USING_MPMD} == "no" ]
	152	then
	153	export NUM_XIOSERVERS=0
[11140]	154	export JOB_PREFIX=${JOB_PREFIX_NOMPMD}
[4245]	155	fi
[3520]	156	#
	157	#
[10573]	158	if [ ${USING_MPMD} == "yes" ] && [ ${USING_XIOS} == "no" ]
[4245]	159	then
	160	echo "Incompatible choices. MPMD mode requires the XIOS server"
	161	exit
	162	fi
[3520]	163
	164	# Directory to run the tests
[9602]	165	CONFIG_DIR0=${MAIN_DIR}/cfgs
	166	TOOLS_DIR=${MAIN_DIR}/tools
[3520]	167
	168	CMP_NAM=${1:-$COMPILER}
	169	# Copy job_batch_COMPILER file for specific compiler into job_batch_template
	170	cd ${SETTE_DIR}
[4245]	171	cp BATCH_TEMPLATE/${JOB_PREFIX}-${COMPILER} job_batch_template \|\| exit
[10747]	172	# Description of available configurations:
	173	# GYRE_PISCES :
	174	# ORCA2_ICE_PISCES :
	175	# ORCA2_OFF_PISCES :
	176	# AMM12 :
	177	# SAS :
	178	# ORCA2_ICE_OBS :
	179	# AGRIF : test AGRIF in a double zoom configuration in the nordic seas + 1 zoom in the eq. Pacific (AGRIF_DEMO)
	180	# and check that key_agrif without zoom = no key_agrif
[13382]	181	# WED025 : regional configuration including sea-ice and tides (Spitzbergen)
[4147]	182
[13568]	183	for config in ${TEST_CONFIGS[@]}
[3520]	184	do
	185
[9518]	186	# -----------
	187	# GYRE_PISCES
	188	# -----------
[13568]	189	if [ ${config} == "GYRE_PISCES" ] && [ ${DO_RESTART} == "1" ] ; then
[9518]	190	## Restartability tests for GYRE_PISCES
[13559]	191	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	192	then
	193	ITEND=12 # 1 day
	194	else
	195	ITEND=1080 # 90 days
	196	fi
	197	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[3520]	198	export TEST_NAME="LONG"
[9658]	199	cd ${MAIN_DIR}
[12569]	200	#
	201	# syncronisation if target directory/file exist (not done by makenemo)
	202	. ${SETTE_DIR}/all_functions.sh
	203	sync_config GYRE_PISCES GYRE_PISCES_ST 'cfgs'
	204	clean_config GYRE_PISCES GYRE_PISCES_ST 'cfgs'
	205	#
[11497]	206	. ./makenemo -m ${CMP_NAM} -n GYRE_PISCES_ST -r GYRE_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]	207	cd ${SETTE_DIR}
[4252]	208	. ./param.cfg
	209	. ./all_functions.sh
	210	. ./prepare_exe_dir.sh
[10755]	211	set_valid_dir
[10698]	212	clean_valid_dir
[3520]	213	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	214	NPROC=8
[4245]	215	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[4147]	216	cd ${EXE_DIR}
[7715]	217	set_namelist namelist_cfg cn_exp \"GYREPIS_LONG\"
[4147]	218	set_namelist namelist_cfg nn_it000 1
[13559]	219	set_namelist namelist_cfg nn_itend ${ITEND}
	220	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	221	set_namelist namelist_cfg ln_linssh .true.
[9525]	222	set_namelist namelist_cfg jpni 2
	223	set_namelist namelist_cfg jpnj 4
[10573]	224	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	225	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[13790]	226	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	227	if [ ${USING_MPMD} == "yes" ] ; then
	228	set_xio_using_server iodef.xml true
	229	else
	230	set_xio_using_server iodef.xml false
	231	fi
	232	cd ${SETTE_DIR}
[10755]	233	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	234
	235	cd ${SETTE_DIR}
	236	export TEST_NAME="SHORT"
[4252]	237	. ./prepare_exe_dir.sh
[10755]	238	set_valid_dir
[10698]	239	clean_valid_dir
[3520]	240	cd ${EXE_DIR}
[7715]	241	set_namelist namelist_cfg cn_exp \"GYREPIS_SHORT\"
[13559]	242	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	243	set_namelist namelist_cfg nn_itend ${ITEND}
	244	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[4147]	245	set_namelist namelist_cfg ln_rstart .true.
	246	set_namelist namelist_cfg nn_rstctl 2
[7646]	247	set_namelist namelist_cfg ln_linssh .true.
[9525]	248	set_namelist namelist_cfg jpni 2
	249	set_namelist namelist_cfg jpnj 4
[10573]	250	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	251	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[7744]	252	set_namelist namelist_top_cfg ln_rsttr .true.
	253	set_namelist namelist_top_cfg nn_rsttr 2
[13559]	254	set_namelist namelist_cfg cn_ocerst_in \"GYREPIS_LONG_${ITRST}_restart\"
	255	set_namelist namelist_top_cfg cn_trcrst_in \"GYREPIS_LONG_${ITRST}_restart_trc\"
[13790]	256	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	257	if [ ${USING_MPMD} == "yes" ] ; then
	258	set_xio_using_server iodef.xml true
	259	else
	260	set_xio_using_server iodef.xml false
	261	fi
[3537]	262	for (( i=1; i<=$NPROC; i++)) ; do
	263	L_NPROC=$(( $i - 1 ))
	264	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	265	ln -sf ../LONG/GYREPIS_LONG_${ITRST}_restart_${L_NPROC}.nc .
	266	ln -sf ../LONG/GYREPIS_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
[3537]	267	done
[3520]	268	cd ${SETTE_DIR}
[10755]	269	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	270	cd ${SETTE_DIR}
[3532]	271	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	272
[13568]	273	fi
	274
	275	if [ ${config} == "GYRE_PISCES" ] && [ ${DO_REPRO} == "1" ] ; then
[9518]	276	## Reproducibility tests for GYRE_PISCES
[9525]	277	export TEST_NAME="REPRO_2_4"
[9658]	278	cd ${MAIN_DIR}
[3520]	279	cd ${SETTE_DIR}
[4252]	280	. ./param.cfg
	281	. ./all_functions.sh
	282	. ./prepare_exe_dir.sh
[10755]	283	set_valid_dir
[10698]	284	clean_valid_dir
[3520]	285	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	286	NPROC=8
[4245]	287	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	288	cd ${EXE_DIR}
[7715]	289	set_namelist namelist_cfg cn_exp \"GYREPIS_48\"
[4147]	290	set_namelist namelist_cfg nn_it000 1
[13559]	291	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	292	set_namelist namelist_cfg ln_linssh .true.
[9525]	293	set_namelist namelist_cfg jpni 2
	294	set_namelist namelist_cfg jpnj 4
[10573]	295	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	296	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[13790]	297	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	298	if [ ${USING_MPMD} == "yes" ] ; then
	299	set_xio_using_server iodef.xml true
	300	else
	301	set_xio_using_server iodef.xml false
	302	fi
[3520]	303	cd ${SETTE_DIR}
[10755]	304	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	305	cd ${SETTE_DIR}
	306	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	307
	308	cd ${SETTE_DIR}
[9525]	309	export TEST_NAME="REPRO_4_2"
[4252]	310	. ./prepare_exe_dir.sh
[10755]	311	set_valid_dir
[10698]	312	clean_valid_dir
[3680]	313	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	314	NPROC=8
[4245]	315	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	316	cd ${EXE_DIR}
[7715]	317	set_namelist namelist_cfg cn_exp \"GYREPIS_84\"
[4147]	318	set_namelist namelist_cfg nn_it000 1
[13559]	319	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	320	set_namelist namelist_cfg ln_linssh .true.
[9525]	321	set_namelist namelist_cfg jpni 4
	322	set_namelist namelist_cfg jpnj 2
[10573]	323	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	324	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[13790]	325	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	326	if [ ${USING_MPMD} == "yes" ] ; then
	327	set_xio_using_server iodef.xml true
	328	else
	329	set_xio_using_server iodef.xml false
	330	fi
[3520]	331	cd ${SETTE_DIR}
[10755]	332	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	333	cd ${SETTE_DIR}
	334	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3532]	335
[3520]	336	fi
	337
[9518]	338	# -----------------
[9663]	339	# ORCA2_ICE_PISCES
[9518]	340	# -----------------
[13568]	341	if [ ${config} == "ORCA2_ICE_PISCES" ] && [ ${DO_RESTART} == "1" ] ; then
[9663]	342	## Restartability tests for ORCA2_ICE_PISCES
[13559]	343	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	344	then
	345	ITEND=16 # 1 day
	346	else
	347	ITEND=992 # 62 days
	348	fi
	349	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[7646]	350	export TEST_NAME="LONG"
[9658]	351	cd ${MAIN_DIR}
[12569]	352	#
	353	# syncronisation if target directory/file exist (not done by makenemo)
	354	. ${SETTE_DIR}/all_functions.sh
	355	sync_config ORCA2_ICE_PISCES ORCA2_ICE_PISCES_ST 'cfgs'
	356	clean_config ORCA2_ICE_PISCES ORCA2_ICE_PISCES_ST 'cfgs'
	357	#
[11497]	358	. ./makenemo -m ${CMP_NAM} -n ORCA2_ICE_PISCES_ST -r ORCA2_ICE_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[7646]	359	cd ${SETTE_DIR}
	360	. ./param.cfg
	361	. ./all_functions.sh
	362	. ./prepare_exe_dir.sh
[10755]	363	set_valid_dir
[10698]	364	clean_valid_dir
[7646]	365	JOB_FILE=${EXE_DIR}/run_job.sh
	366	NPROC=32
	367	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	368	cd ${EXE_DIR}
	369	set_namelist namelist_cfg cn_exp \"O2L3P_LONG\"
	370	set_namelist namelist_cfg nn_it000 1
[13559]	371	set_namelist namelist_cfg nn_itend ${ITEND}
	372	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	373	set_namelist namelist_cfg jpni 4
	374	set_namelist namelist_cfg jpnj 8
[10573]	375	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	376	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9933]	377	set_namelist namelist_cfg ln_use_calving .true.
[14244]	378	set_namelist namelist_cfg ln_wave .true.
[13948]	379	set_namelist namelist_cfg ln_cdgw .false.
[14244]	380	set_namelist namelist_cfg ln_sdw .true.
	381	set_namelist namelist_cfg ln_stcor .true.
[9904]	382	#
[13568]	383	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
	384	if [ ${USING_ICEBERGS} == "yes" ] ; then set_namelist namelist_cfg ln_icebergs .true. ; fi
	385	if [ ${USING_EXTRA_HALO} == "no" ] ; then set_namelist namelist_cfg nn_hls 1 ; fi
	386	if [ ${USING_EXTRA_HALO} == "yes" ] ; then set_namelist namelist_cfg nn_hls 2 ; fi
[10687]	387	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[9904]	388	#
[9019]	389	set_namelist namelist_ice_cfg ln_icediachk .true.
[4147]	390	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	391	set_namelist namelist_top_cfg ln_trcbc .false.
	392	# put ln_ironsed, ln_hydrofe to false
[3520]	393	# if not you need input files, and for tests is not necessary
[4147]	394	set_namelist namelist_pisces_cfg ln_varpar .false.
	395	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	396	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	397	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[9203]	398	# put ln_pisdmp to false : no restoring to global mean value
	399	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[13790]	400	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	401	if [ ${USING_MPMD} == "yes" ] ; then
	402	set_xio_using_server iodef.xml true
	403	else
	404	set_xio_using_server iodef.xml false
	405	fi
[3520]	406	cd ${SETTE_DIR}
[10755]	407	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3532]	408
	409	cd ${SETTE_DIR}
[3520]	410	export TEST_NAME="SHORT"
[4252]	411	. ./prepare_exe_dir.sh
[10755]	412	set_valid_dir
[10698]	413	clean_valid_dir
[3520]	414	cd ${EXE_DIR}
[7646]	415	set_namelist namelist_cfg cn_exp \"O2L3P_SHORT\"
[13559]	416	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	417	set_namelist namelist_cfg nn_itend ${ITEND}
	418	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[4147]	419	set_namelist namelist_cfg ln_rstart .true.
	420	set_namelist namelist_cfg nn_rstctl 2
[7646]	421	set_namelist namelist_cfg jpni 4
	422	set_namelist namelist_cfg jpnj 8
[10573]	423	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	424	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9920]	425	set_namelist namelist_cfg nn_test_icebergs -1
[14244]	426	set_namelist namelist_cfg ln_wave .true.
[13948]	427	set_namelist namelist_cfg ln_cdgw .false.
[14244]	428	set_namelist namelist_cfg ln_sdw .true.
	429	set_namelist namelist_cfg ln_stcor .true.
[9904]	430	#
[13568]	431	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
	432	if [ ${USING_ICEBERGS} == "yes" ] ; then set_namelist namelist_cfg ln_icebergs .true. ; fi
	433	if [ ${USING_EXTRA_HALO} == "no" ] ; then set_namelist namelist_cfg nn_hls 1 ; fi
	434	if [ ${USING_EXTRA_HALO} == "yes" ] ; then set_namelist namelist_cfg nn_hls 2 ; fi
[10732]	435	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[9904]	436	#
[9933]	437	set_namelist namelist_ice_cfg ln_icediachk .true.
[4147]	438	set_namelist namelist_top_cfg ln_rsttr .true.
	439	set_namelist namelist_top_cfg nn_rsttr 2
[13559]	440	set_namelist namelist_cfg cn_ocerst_in \"O2L3P_LONG_${ITRST}_restart\"
	441	set_namelist namelist_cfg cn_icbrst_in \"O2L3P_LONG_${ITRST}_restart_icb\"
	442	set_namelist namelist_top_cfg cn_trcrst_in \"O2L3P_LONG_${ITRST}_restart_trc\"
	443	set_namelist namelist_ice_cfg cn_icerst_in \"O2L3P_LONG_${ITRST}_restart_ice\"
[12428]	444	set_namelist namelist_top_cfg ln_trcbc .false.
	445	# put ln_ironsed, ln_hydrofe to false
[3520]	446	# if not you need input files, and for tests is not necessary
[4147]	447	set_namelist namelist_pisces_cfg ln_varpar .false.
	448	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	449	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	450	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	451	# put ln_pisdmp to false : no restoring to global mean value
[4147]	452	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[3537]	453	for (( i=1; i<=$NPROC; i++)) ; do
	454	L_NPROC=$(( $i - 1 ))
	455	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	456	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_${L_NPROC}.nc .
	457	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
	458	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_ice_${L_NPROC}.nc .
[9904]	459	if [ ${USING_ICEBERGS} == "yes" ]
	460	then
[13559]	461	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_icb_${L_NPROC}.nc O2L3P_LONG_${ITRST}_restart_icb_${L_NPROC}.nc
[9904]	462	fi
[3537]	463	done
[13790]	464	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	465	if [ ${USING_MPMD} == "yes" ] ; then
	466	set_xio_using_server iodef.xml true
	467	else
	468	set_xio_using_server iodef.xml false
	469	fi
[3520]	470	cd ${SETTE_DIR}
[10755]	471	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	472	cd ${SETTE_DIR}
[3532]	473	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	474
[13568]	475	fi
	476
	477	if [ ${config} == "ORCA2_ICE_PISCES" ] && [ ${DO_REPRO} == "1" ] ; then
[9663]	478	## Reproducibility tests for ORCA2_ICE_PISCES
[7646]	479	export TEST_NAME="REPRO_4_8"
[9658]	480	cd ${MAIN_DIR}
[3520]	481	cd ${SETTE_DIR}
[4252]	482	. ./param.cfg
	483	. ./all_functions.sh
	484	. ./prepare_exe_dir.sh
[10755]	485	set_valid_dir
[10698]	486	clean_valid_dir
[3520]	487	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	488	NPROC=32
[4245]	489	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	490	cd ${EXE_DIR}
[9019]	491	set_namelist namelist_cfg cn_exp \"O2L3P_48\"
[4147]	492	set_namelist namelist_cfg nn_it000 1
[13559]	493	set_namelist namelist_cfg nn_itend ${ITEND}
[4147]	494	set_namelist namelist_cfg jpni 4
[7646]	495	set_namelist namelist_cfg jpnj 8
[10573]	496	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	497	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[14244]	498	set_namelist namelist_cfg ln_wave .true.
[13948]	499	set_namelist namelist_cfg ln_cdgw .false.
[14244]	500	set_namelist namelist_cfg ln_sdw .true.
	501	set_namelist namelist_cfg ln_stcor .true.
[10189]	502
[13568]	503	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
	504	if [ ${USING_ICEBERGS} == "yes" ] ; then set_namelist namelist_cfg ln_icebergs .true. ; fi
	505	if [ ${USING_EXTRA_HALO} == "no" ] ; then set_namelist namelist_cfg nn_hls 1 ; fi
	506	if [ ${USING_EXTRA_HALO} == "yes" ] ; then set_namelist namelist_cfg nn_hls 2 ; fi
[10687]	507	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
	508
[4147]	509	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	510	set_namelist namelist_top_cfg ln_trcbc .false.
	511	# put ln_ironsed, ln_hydrofe to false
[3520]	512	# if not you need input files, and for tests is not necessary
[4147]	513	set_namelist namelist_pisces_cfg ln_varpar .false.
	514	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	515	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	516	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	517	# put ln_pisdmp to false : no restoring to global mean value
[4147]	518	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[13790]	519	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	520	if [ ${USING_MPMD} == "yes" ] ; then
	521	set_xio_using_server iodef.xml true
	522	else
	523	set_xio_using_server iodef.xml false
	524	fi
[3520]	525	cd ${SETTE_DIR}
[10755]	526	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	527	cd ${SETTE_DIR}
[3532]	528	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	529
	530	cd ${SETTE_DIR}
[7646]	531	export TEST_NAME="REPRO_8_4"
[4252]	532	. ./prepare_exe_dir.sh
[10755]	533	set_valid_dir
[10698]	534	clean_valid_dir
[3680]	535	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	536	NPROC=32
[4245]	537	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	538	cd ${EXE_DIR}
[9019]	539	set_namelist namelist_cfg cn_exp \"O2L3P_84\"
[4147]	540	set_namelist namelist_cfg nn_it000 1
[13559]	541	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	542	set_namelist namelist_cfg jpni 8
	543	set_namelist namelist_cfg jpnj 4
[10573]	544	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	545	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[14244]	546	set_namelist namelist_cfg ln_wave .true.
[13948]	547	set_namelist namelist_cfg ln_cdgw .false.
[14244]	548	set_namelist namelist_cfg ln_sdw .true.
	549	set_namelist namelist_cfg ln_stcor .true.
[10687]	550
[13568]	551	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
	552	if [ ${USING_ICEBERGS} == "yes" ] ; then set_namelist namelist_cfg ln_icebergs .true. ; fi
	553	if [ ${USING_EXTRA_HALO} == "no" ] ; then set_namelist namelist_cfg nn_hls 1 ; fi
	554	if [ ${USING_EXTRA_HALO} == "yes" ] ; then set_namelist namelist_cfg nn_hls 2 ; fi
[10687]	555	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
	556
[4147]	557	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	558	set_namelist namelist_top_cfg ln_trcbc .false.
	559	# put ln_ironsed, ln_hydrofe to false
[3520]	560	# if not you need input files, and for tests is not necessary
[4147]	561	set_namelist namelist_pisces_cfg ln_varpar .false.
	562	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	563	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	564	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	565	# put ln_pisdmp to false : no restoring to global mean value
[4147]	566	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[13790]	567	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	568	if [ ${USING_MPMD} == "yes" ] ; then
	569	set_xio_using_server iodef.xml true
	570	else
	571	set_xio_using_server iodef.xml false
	572	fi
[3520]	573	cd ${SETTE_DIR}
[10755]	574	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	575	cd ${SETTE_DIR}
	576	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	577	fi
	578
[9518]	579	# ----------------
	580	# ORCA2_OFF_PISCES
	581	# ----------------
[13568]	582	if [ ${config} == "ORCA2_OFF_PISCES" ] && [ ${DO_RESTART} == "1" ] ; then
[9518]	583	## Restartability tests for ORCA2_OFF_PISCES
[13559]	584	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	585	then
	586	ITEND=16 # 4 days
	587	else
	588	ITEND=380 # 95 days
	589	fi
	590	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[3520]	591	export TEST_NAME="LONG"
[9658]	592	cd ${MAIN_DIR}
[12569]	593	#
	594	# syncronisation if target directory/file exist (not done by makenemo)
	595	. ${SETTE_DIR}/all_functions.sh
	596	sync_config ORCA2_OFF_PISCES ORCA2_OFF_PISCES_ST 'cfgs'
	597	clean_config ORCA2_OFF_PISCES ORCA2_OFF_PISCES_ST 'cfgs'
	598	#
[11497]	599	. ./makenemo -m ${CMP_NAM} -n ORCA2_OFF_PISCES_ST -r ORCA2_OFF_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]	600	cd ${SETTE_DIR}
[4252]	601	. ./param.cfg
	602	. ./all_functions.sh
	603	. ./prepare_exe_dir.sh
[10755]	604	set_valid_dir
[10698]	605	clean_valid_dir
[3520]	606	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	607	NPROC=32
[4245]	608	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	609	cd ${EXE_DIR}
[4147]	610	set_namelist namelist_cfg cn_exp \"OFFP_LONG\"
	611	set_namelist namelist_cfg nn_it000 1
[13559]	612	set_namelist namelist_cfg nn_itend ${ITEND}
	613	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	614	set_namelist namelist_cfg jpni 4
	615	set_namelist namelist_cfg jpnj 8
[10573]	616	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	617	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	618	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	619	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	620	set_namelist namelist_top_cfg ln_trcbc .false.
	621	# put ln_ironsed, ln_hydrofe to false
[3520]	622	# if not you need input files, and for tests is not necessary
[4147]	623	set_namelist namelist_pisces_cfg ln_varpar .false.
	624	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	625	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	626	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	627	# put ln_pisdmp to false : no restoring to global mean value
[4147]	628	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[13790]	629	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	630	if [ ${USING_MPMD} == "yes" ] ; then
	631	set_xio_using_server iodef.xml true
	632	else
	633	set_xio_using_server iodef.xml false
	634	fi
[3520]	635	cd ${SETTE_DIR}
[10755]	636	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	637
	638	cd ${SETTE_DIR}
	639	export TEST_NAME="SHORT"
[4252]	640	. ./prepare_exe_dir.sh
[10755]	641	set_valid_dir
[10698]	642	clean_valid_dir
[3520]	643	cd ${EXE_DIR}
[4147]	644	set_namelist namelist_cfg cn_exp \"OFFP_SHORT\"
[13559]	645	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	646	set_namelist namelist_cfg nn_itend ${ITEND}
	647	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	648	set_namelist namelist_cfg jpni 4
	649	set_namelist namelist_cfg jpnj 8
[10573]	650	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	651	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	652	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	653	set_namelist namelist_top_cfg ln_rsttr .true.
	654	set_namelist namelist_top_cfg nn_rsttr 2
[13559]	655	set_namelist namelist_top_cfg cn_trcrst_in \"OFFP_LONG_${ITRST}_restart_trc\"
[3537]	656	for (( i=1; i<=$NPROC; i++)) ; do
	657	L_NPROC=$(( $i - 1 ))
	658	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	659	ln -sf ../LONG/OFFP_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
[3537]	660	done
[12428]	661	set_namelist namelist_top_cfg ln_trcbc .false.
	662	# put ln_ironsed, ln_hydrofe to false
[3520]	663	# if not you need input files, and for tests is not necessary
[4147]	664	set_namelist namelist_pisces_cfg ln_varpar .false.
	665	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	666	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	667	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	668	# put ln_pisdmp to false : no restoring to global mean value
[4147]	669	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[13790]	670	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	671	if [ ${USING_MPMD} == "yes" ] ; then
	672	set_xio_using_server iodef.xml true
	673	else
	674	set_xio_using_server iodef.xml false
	675	fi
[3520]	676	cd ${SETTE_DIR}
[10755]	677	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	678	cd ${SETTE_DIR}
	679	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	680
[13568]	681	fi
	682
	683	if [ ${config} == "ORCA2_OFF_PISCES" ] && [ ${DO_REPRO} == "1" ] ; then
[9518]	684	## Reproducibility tests for ORCA2_OFF_PISCES
[7646]	685	export TEST_NAME="REPRO_4_8"
[9658]	686	cd ${MAIN_DIR}
[3520]	687	cd ${SETTE_DIR}
[4252]	688	. ./param.cfg
	689	. ./all_functions.sh
	690	. ./prepare_exe_dir.sh
[10755]	691	set_valid_dir
[10698]	692	clean_valid_dir
[3520]	693	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	694	NPROC=32
[4245]	695	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	696	cd ${EXE_DIR}
[9019]	697	set_namelist namelist_cfg cn_exp \"OFFP_48\"
[4147]	698	set_namelist namelist_cfg nn_it000 1
[13559]	699	set_namelist namelist_cfg nn_itend ${ITEND}
[4147]	700	set_namelist namelist_cfg jpni 4
[7646]	701	set_namelist namelist_cfg jpnj 8
[10573]	702	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	703	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	704	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	705	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	706	set_namelist namelist_top_cfg ln_trcbc .false.
	707	# put ln_ironsed, ln_hydrofe to false
[3520]	708	# if not you need input files, and for tests is not necessary
[4147]	709	set_namelist namelist_pisces_cfg ln_varpar .false.
	710	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	711	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	712	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	713	# put ln_pisdmp to false : no restoring to global mean value
[4147]	714	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[13790]	715	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	716	if [ ${USING_MPMD} == "yes" ] ; then
	717	set_xio_using_server iodef.xml true
	718	else
	719	set_xio_using_server iodef.xml false
	720	fi
[3520]	721	cd ${SETTE_DIR}
[10755]	722	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	723	cd ${SETTE_DIR}
[3532]	724	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	725
	726	cd ${SETTE_DIR}
[7646]	727	export TEST_NAME="REPRO_8_4"
[4252]	728	. ./prepare_exe_dir.sh
[10755]	729	set_valid_dir
[10698]	730	clean_valid_dir
[3680]	731	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	732	NPROC=32
[4245]	733	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	734	cd ${EXE_DIR}
[9019]	735	set_namelist namelist_cfg cn_exp \"OFFP_84\"
[4147]	736	set_namelist namelist_cfg nn_it000 1
[13559]	737	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	738	set_namelist namelist_cfg jpni 8
	739	set_namelist namelist_cfg jpnj 4
[10573]	740	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	741	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	742	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	743	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	744	set_namelist namelist_top_cfg ln_trcbc .false.
	745	# put ln_ironsed, ln_hydrofe to false
[3520]	746	# if not you need input files, and for tests is not necessary
[4147]	747	set_namelist namelist_pisces_cfg ln_varpar .false.
	748	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	749	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	750	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	751	# put ln_pisdmp to false : no restoring to global mean value
[4147]	752	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[13790]	753	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	754	if [ ${USING_MPMD} == "yes" ] ; then
	755	set_xio_using_server iodef.xml true
	756	else
	757	set_xio_using_server iodef.xml false
	758	fi
[3520]	759	cd ${SETTE_DIR}
[10755]	760	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	761	cd ${SETTE_DIR}
	762	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	763	fi
	764
[9518]	765	# -----
	766	# AMM12
	767	# -----
[13568]	768	if [ ${config} == "AMM12" ] && [ ${DO_RESTART} == "1" ] ; then
[3532]	769	## Restartability tests for AMM12
[13559]	770	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	771	then
	772	ITEND=12 # 3 h
	773	else
	774	ITEND=576 # 4 days
	775	fi
	776	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[3532]	777	export TEST_NAME="LONG"
[9658]	778	cd ${MAIN_DIR}
[12569]	779	#
	780	# syncronisation if target directory/file exist (not done by makenemo)
	781	. ${SETTE_DIR}/all_functions.sh
	782	sync_config AMM12 AMM12_ST 'cfgs'
	783	clean_config AMM12 AMM12_ST 'cfgs'
	784	#
[11497]	785	. ./makenemo -m ${CMP_NAM} -n AMM12_ST -r AMM12 -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]	786	cd ${SETTE_DIR}
[4252]	787	. ./param.cfg
	788	. ./all_functions.sh
	789	. ./prepare_exe_dir.sh
[10755]	790	set_valid_dir
[10698]	791	clean_valid_dir
[3520]	792	JOB_FILE=${EXE_DIR}/run_job.sh
	793	NPROC=32
[4245]	794	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	795	cd ${EXE_DIR}
[9019]	796	set_namelist namelist_cfg cn_exp \"AMM12_LONG\"
[4147]	797	set_namelist namelist_cfg nn_it000 1
[13559]	798	set_namelist namelist_cfg nn_itend ${ITEND}
	799	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	800	set_namelist namelist_cfg jpni 4
	801	set_namelist namelist_cfg jpnj 8
[10573]	802	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13790]	803	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	804	if [ ${USING_MPMD} == "yes" ] ; then
	805	set_xio_using_server iodef.xml true
	806	else
	807	set_xio_using_server iodef.xml false
	808	fi
[3520]	809	cd ${SETTE_DIR}
[10755]	810	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	811
	812	cd ${SETTE_DIR}
[3532]	813	export TEST_NAME="SHORT"
[4379]	814	. ./prepare_exe_dir.sh
[10755]	815	set_valid_dir
[10698]	816	clean_valid_dir
[3520]	817	cd ${EXE_DIR}
[9019]	818	set_namelist namelist_cfg cn_exp \"AMM12_SHORT\"
[13559]	819	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	820	set_namelist namelist_cfg nn_itend ${ITEND}
	821	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	822	set_namelist namelist_cfg jpni 4
	823	set_namelist namelist_cfg jpnj 8
[10573]	824	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4147]	825	set_namelist namelist_cfg ln_rstart .true.
	826	set_namelist namelist_cfg nn_rstctl 2
[13559]	827	set_namelist namelist_cfg cn_ocerst_in \"AMM12_LONG_${ITRST}_restart\"
[4252]	828	set_namelist namelist_cfg nn_date0 20120102
[3537]	829	for (( i=1; i<=$NPROC; i++)) ; do
	830	L_NPROC=$(( $i - 1 ))
	831	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	832	ln -sf ../LONG/AMM12_LONG_${ITRST}_restart_${L_NPROC}.nc .
[3537]	833	done
[13790]	834	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	835	if [ ${USING_MPMD} == "yes" ] ; then
	836	set_xio_using_server iodef.xml true
	837	else
	838	set_xio_using_server iodef.xml false
	839	fi
[3520]	840	cd ${SETTE_DIR}
[10755]	841	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	842	cd ${SETTE_DIR}
[3532]	843	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	844
[13568]	845	fi
	846
	847	if [ ${config} == "AMM12" ] && [ ${DO_REPRO} == "1" ] ; then
[3680]	848	## Reproducibility tests for AMM12
	849	export TEST_NAME="REPRO_8_4"
[9658]	850	cd ${MAIN_DIR}
[3520]	851	cd ${SETTE_DIR}
[4252]	852	. ./param.cfg
	853	. ./all_functions.sh
	854	. ./prepare_exe_dir.sh
[10755]	855	set_valid_dir
[10698]	856	clean_valid_dir
[3520]	857	JOB_FILE=${EXE_DIR}/run_job.sh
	858	NPROC=32
[4245]	859	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	860	cd ${EXE_DIR}
[9019]	861	set_namelist namelist_cfg cn_exp \"AMM12_84\"
[4147]	862	set_namelist namelist_cfg nn_it000 1
[13559]	863	set_namelist namelist_cfg nn_itend ${ITEND}
[4147]	864	set_namelist namelist_cfg jpni 8
	865	set_namelist namelist_cfg jpnj 4
[10573]	866	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13790]	867	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	868	if [ ${USING_MPMD} == "yes" ] ; then
	869	set_xio_using_server iodef.xml true
	870	else
	871	set_xio_using_server iodef.xml false
	872	fi
[3520]	873	cd ${SETTE_DIR}
[10755]	874	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	875	cd ${SETTE_DIR}
	876	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	877
	878	cd ${SETTE_DIR}
[3680]	879	export TEST_NAME="REPRO_4_8"
[4252]	880	. ./prepare_exe_dir.sh
[10755]	881	set_valid_dir
[10698]	882	clean_valid_dir
[5478]	883	JOB_FILE=${EXE_DIR}/run_job.sh
	884	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	885	cd ${EXE_DIR}
[9019]	886	set_namelist namelist_cfg cn_exp \"AMM12_48\"
[4147]	887	set_namelist namelist_cfg nn_it000 1
[13559]	888	set_namelist namelist_cfg nn_itend ${ITEND}
[4147]	889	set_namelist namelist_cfg jpni 4
	890	set_namelist namelist_cfg jpnj 8
[10573]	891	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13790]	892	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	893	if [ ${USING_MPMD} == "yes" ] ; then
	894	set_xio_using_server iodef.xml true
	895	else
	896	set_xio_using_server iodef.xml false
	897	fi
[3520]	898	cd ${SETTE_DIR}
[10755]	899	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	900	cd ${SETTE_DIR}
[3532]	901	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	902	fi
	903
	904
[9518]	905	# ---------
	906	# ORCA2_SAS
	907	# ---------
[13568]	908	if [ ${config} == "SAS" ] && [ ${DO_RESTART} == "1" ] ; then
[9518]	909	## Restartability tests
[13559]	910	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	911	then
	912	ITEND=16 # 1 day
	913	else
	914	ITEND=256 # 16 days
	915	fi
	916	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[4147]	917	export TEST_NAME="LONG"
[9658]	918	cd ${MAIN_DIR}
[12569]	919	#
	920	# syncronisation if target directory/file exist (not done by makenemo)
	921	. ${SETTE_DIR}/all_functions.sh
	922	sync_config ORCA2_SAS_ICE ORCA2_SAS_ICE_ST 'cfgs'
	923	clean_config ORCA2_SAS_ICE ORCA2_SAS_ICE_ST 'cfgs'
	924	#
[11497]	925	. ./makenemo -m ${CMP_NAM} -n ORCA2_SAS_ICE_ST -r ORCA2_SAS_ICE -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[4147]	926	cd ${SETTE_DIR}
[4252]	927	. ./param.cfg
	928	. ./all_functions.sh
	929	. ./prepare_exe_dir.sh
[10755]	930	set_valid_dir
[10698]	931	clean_valid_dir
[4147]	932	JOB_FILE=${EXE_DIR}/run_job.sh
	933	NPROC=32
[7646]	934	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[4147]	935	cd ${EXE_DIR}
	936	set_namelist namelist_cfg cn_exp \"SAS\"
	937	set_namelist namelist_cfg nn_it000 1
[13559]	938	set_namelist namelist_cfg nn_itend ${ITEND}
	939	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	940	set_namelist namelist_cfg jpni 4
	941	set_namelist namelist_cfg jpnj 8
[10573]	942	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9019]	943	set_namelist namelist_ice_cfg ln_icediachk .true.
[13790]	944	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	945	if [ ${USING_MPMD} == "yes" ] ; then
	946	set_xio_using_server iodef.xml true
	947	else
	948	set_xio_using_server iodef.xml false
	949	fi
[4147]	950	cd ${SETTE_DIR}
[10755]	951	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4147]	952
	953	cd ${SETTE_DIR}
	954	export TEST_NAME="SHORT"
[4252]	955	. ./prepare_exe_dir.sh
[10755]	956	set_valid_dir
[10698]	957	clean_valid_dir
[4147]	958	cd ${EXE_DIR}
	959	set_namelist namelist_cfg cn_exp \"SAS\"
[13559]	960	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	961	set_namelist namelist_cfg nn_itend ${ITEND}
	962	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	963	set_namelist namelist_cfg jpni 4
	964	set_namelist namelist_cfg jpnj 8
[10573]	965	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[7646]	966	set_namelist namelist_cfg ln_rstart .true.
[4147]	967	set_namelist namelist_cfg nn_rstctl 2
[9019]	968	set_namelist namelist_cfg nn_date0 010109
[13559]	969	set_namelist namelist_cfg cn_ocerst_in \"SAS_${ITRST}_restart\"
	970	set_namelist namelist_ice_cfg cn_icerst_in \"SAS_${ITRST}_restart_ice\"
[13790]	971	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4245]	972	if [ ${USING_MPMD} == "yes" ] ; then
	973	set_xio_using_server iodef.xml true
	974	else
	975	set_xio_using_server iodef.xml false
	976	fi
[7646]	977	for (( i=1; i<=$NPROC; i++)) ; do
	978	L_NPROC=$(( $i - 1 ))
	979	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	980	ln -sf ../LONG/SAS_${ITRST}_restart_${L_NPROC}.nc .
	981	ln -sf ../LONG/SAS_${ITRST}_restart_ice_${L_NPROC}.nc .
[7646]	982	done
[4147]	983	cd ${SETTE_DIR}
[10755]	984	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4147]	985	cd ${SETTE_DIR}
	986	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	987
[13568]	988	fi
	989
	990	if [ ${config} == "SAS" ] && [ ${DO_REPRO} == "1" ] ; then
[9518]	991	## Reproducibility tests
[13559]	992	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	993	then
	994	ITEND=16 # 1 day
	995	else
	996	ITEND=80 # 5 days
	997	fi
[9518]	998	export TEST_NAME="REPRO_4_8"
[9658]	999	cd ${MAIN_DIR}
[4990]	1000	cd ${SETTE_DIR}
	1001	. ./param.cfg
	1002	. ./all_functions.sh
	1003	. ./prepare_exe_dir.sh
[10755]	1004	set_valid_dir
[10698]	1005	clean_valid_dir
[4990]	1006	JOB_FILE=${EXE_DIR}/run_job.sh
[9518]	1007	NPROC=32
[4990]	1008	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1009	cd ${EXE_DIR}
[9518]	1010	set_namelist namelist_cfg cn_exp \"SAS_48\"
[4990]	1011	set_namelist namelist_cfg nn_it000 1
[13559]	1012	set_namelist namelist_cfg nn_itend ${ITEND}
[9518]	1013	set_namelist namelist_cfg jpni 4
	1014	set_namelist namelist_cfg jpnj 8
[10573]	1015	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13790]	1016	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4990]	1017	if [ ${USING_MPMD} == "yes" ] ; then
	1018	set_xio_using_server iodef.xml true
	1019	else
	1020	set_xio_using_server iodef.xml false
	1021	fi
	1022	cd ${SETTE_DIR}
[10755]	1023	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1024	cd ${SETTE_DIR}
	1025	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[9019]	1026
[4990]	1027	cd ${SETTE_DIR}
[7646]	1028	export TEST_NAME="REPRO_8_4"
[4990]	1029	. ./prepare_exe_dir.sh
[10755]	1030	set_valid_dir
[10698]	1031	clean_valid_dir
[4990]	1032	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	1033	NPROC=32
[4990]	1034	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1035	cd ${EXE_DIR}
[9518]	1036	set_namelist namelist_cfg cn_exp \"SAS_84\"
[4990]	1037	set_namelist namelist_cfg nn_it000 1
[13559]	1038	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	1039	set_namelist namelist_cfg jpni 8
	1040	set_namelist namelist_cfg jpnj 4
[10573]	1041	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13790]	1042	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4990]	1043	if [ ${USING_MPMD} == "yes" ] ; then
	1044	set_xio_using_server iodef.xml true
	1045	else
	1046	set_xio_using_server iodef.xml false
	1047	fi
	1048	cd ${SETTE_DIR}
[10755]	1049	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1050	cd ${SETTE_DIR}
	1051	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1052
	1053	fi
	1054
[9518]	1055
	1056	# --------------
[9663]	1057	# ORCA2_ICE_OBS
[9518]	1058	# --------------
[4990]	1059	## Test assimilation interface code, OBS and ASM for reproducibility
	1060	## Restartability not tested (ASM code not restartable while increments are being applied)
[13568]	1061	if [ ${config} == "ORCA2_ICE_OBS" ] && [ ${DO_RESTART} == "1" ] ; then
[9518]	1062	## Reproducibility tests
[13559]	1063	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	1064	then
	1065	ITEND=16 # 1 day
	1066	else
	1067	ITEND=80 # 5 days
	1068	fi
[7646]	1069	export TEST_NAME="REPRO_4_8"
[9658]	1070	cd ${MAIN_DIR}
[12569]	1071	#
	1072	# syncronisation if target directory/file exist (not done by makenemo)
	1073	. ${SETTE_DIR}/all_functions.sh
	1074	sync_config ORCA2_ICE_PISCES ORCA2_ICE_OBS_ST 'cfgs'
	1075	clean_config ORCA2_ICE_PISCES ORCA2_ICE_OBS_ST 'cfgs'
	1076	#
[13507]	1077	. ./makenemo -m ${CMP_NAM} -n ORCA2_ICE_OBS_ST -r ORCA2_ICE_PISCES -d "OCE ICE" -j 8 add_key "key_asminc ${ADD_KEYS}" del_key "key_top ${DEL_KEYS}"
[4990]	1078	cd ${SETTE_DIR}
	1079	. ./param.cfg
	1080	. ./all_functions.sh
	1081	. ./prepare_exe_dir.sh
[10755]	1082	set_valid_dir
[10698]	1083	clean_valid_dir
[4990]	1084	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	1085	NPROC=32
[4990]	1086	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1087	cd ${EXE_DIR}
[9019]	1088	set_namelist namelist_cfg cn_exp \"O2L3OBS_48\"
[4990]	1089	set_namelist namelist_cfg nn_it000 1
[13559]	1090	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	1091	set_namelist namelist_cfg ln_read_cfg .true.
[4990]	1092	set_namelist namelist_cfg jpni 4
[7646]	1093	set_namelist namelist_cfg jpnj 8
[10573]	1094	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	1095	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[6140]	1096	set_namelist namelist_cfg ln_diaobs .true.
[4990]	1097	set_namelist namelist_cfg ln_t3d .true.
	1098	set_namelist namelist_cfg ln_s3d .true.
	1099	set_namelist namelist_cfg ln_sst .true.
	1100	set_namelist namelist_cfg ln_sla .true.
[6140]	1101	set_namelist namelist_cfg ln_sic .true.
	1102	set_namelist namelist_cfg ln_vel3d .true.
[4990]	1103	set_namelist namelist_cfg ln_bkgwri .true.
	1104	set_namelist namelist_cfg ln_trainc .true.
	1105	set_namelist namelist_cfg ln_dyninc .true.
	1106	set_namelist namelist_cfg ln_sshinc .true.
	1107	set_namelist namelist_cfg ln_asmiau .true.
[9663]	1108	#remove all useless options for pisces (due to ORCA2_ICE_PISCES reference configuration)
[7722]	1109	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	1110	set_namelist namelist_top_cfg ln_trcbc .false.
[7722]	1111	# put ln_ironsed, ln_river, ln_ndepo, ln_dust to false
	1112	# if not you need input files, and for tests is not necessary
	1113	set_namelist namelist_pisces_cfg ln_varpar .false.
	1114	set_namelist namelist_pisces_cfg ln_ironsed .false.
	1115	set_namelist namelist_pisces_cfg ln_ironice .false.
	1116	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[13790]	1117	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4990]	1118	if [ ${USING_MPMD} == "yes" ] ; then
	1119	set_xio_using_server iodef.xml true
	1120	else
	1121	set_xio_using_server iodef.xml false
	1122	fi
	1123	cd ${SETTE_DIR}
[10755]	1124	. ./prepare_job.sh input_ORCA2_ICE_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1125	cd ${SETTE_DIR}
	1126	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1127
	1128	cd ${SETTE_DIR}
[7646]	1129	export TEST_NAME="REPRO_8_4"
[4990]	1130	. ./prepare_exe_dir.sh
[10755]	1131	set_valid_dir
[10698]	1132	clean_valid_dir
[4990]	1133	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	1134	NPROC=32
[4990]	1135	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1136	cd ${EXE_DIR}
[9019]	1137	set_namelist namelist_cfg cn_exp \"O2L3OBS_84\"
[4990]	1138	set_namelist namelist_cfg nn_it000 1
[13559]	1139	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	1140	set_namelist namelist_cfg ln_read_cfg .true.
	1141	set_namelist namelist_cfg jpni 8
	1142	set_namelist namelist_cfg jpnj 4
[10573]	1143	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	1144	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[6140]	1145	set_namelist namelist_cfg ln_diaobs .true.
[4990]	1146	set_namelist namelist_cfg ln_t3d .true.
	1147	set_namelist namelist_cfg ln_s3d .true.
	1148	set_namelist namelist_cfg ln_sst .true.
	1149	set_namelist namelist_cfg ln_sla .true.
[6140]	1150	set_namelist namelist_cfg ln_sic .true.
	1151	set_namelist namelist_cfg ln_vel3d .true.
[4990]	1152	set_namelist namelist_cfg ln_bkgwri .true.
	1153	set_namelist namelist_cfg ln_trainc .true.
	1154	set_namelist namelist_cfg ln_dyninc .true.
	1155	set_namelist namelist_cfg ln_sshinc .true.
	1156	set_namelist namelist_cfg ln_asmiau .true.
[9663]	1157	#remove all useless options for pisces (due to ORCA2_ICE_PISCES reference configuration)
[7722]	1158	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	1159	set_namelist namelist_top_cfg ln_trcbc .false.
[7722]	1160	# put ln_ironsed, ln_river, ln_ndepo, ln_dust to false
	1161	# if not you need input files, and for tests is not necessary
	1162	set_namelist namelist_pisces_cfg ln_varpar .false.
	1163	set_namelist namelist_pisces_cfg ln_ironsed .false.
	1164	set_namelist namelist_pisces_cfg ln_ironice .false.
	1165	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[13790]	1166	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[4990]	1167	if [ ${USING_MPMD} == "yes" ] ; then
	1168	set_xio_using_server iodef.xml true
	1169	else
	1170	set_xio_using_server iodef.xml false
	1171	fi
	1172	cd ${SETTE_DIR}
[10755]	1173	. ./prepare_job.sh input_ORCA2_ICE_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1174	cd ${SETTE_DIR}
	1175	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1176	fi
[5589]	1177
[9483]	1178	# ------------
[9663]	1179	# AGRIF ICE
[9483]	1180	# -----------
[13568]	1181	if [ ${config} == "AGRIF" ] && [ ${DO_RESTART} == "1" ] ; then
[9518]	1182	## Restartability tests
[13559]	1183	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	1184	then
	1185	ITEND=4 # 6h
	1186	else
	1187	ITEND=20 # 1d and 6h
	1188	fi
	1189	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
	1190	ITRST_1=$( printf "%08d" $(( ${ITEND} / 2 )) )
	1191	ITRST_2=$( printf "%08d" $(( ${ITEND} * 4 / 2 )) )
	1192	ITRST_3=$( printf "%08d" $(( ${ITEND} * 4 * 3 / 2 )) )
[9483]	1193	export TEST_NAME="LONG"
[9658]	1194	cd ${MAIN_DIR}
[12569]	1195	#
	1196	# syncronisation if target directory/file exist (not done by makenemo)
	1197	. ${SETTE_DIR}/all_functions.sh
	1198	sync_config AGRIF_DEMO AGRIF_DEMO_ST 'cfgs'
	1199	clean_config AGRIF_DEMO AGRIF_DEMO_ST 'cfgs'
	1200	#
[11497]	1201	. ./makenemo -m ${CMP_NAM} -n AGRIF_DEMO_ST -r AGRIF_DEMO -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9483]	1202	cd ${SETTE_DIR}
	1203	. ./param.cfg
	1204	. ./all_functions.sh
	1205	. ./prepare_exe_dir.sh
[10755]	1206	set_valid_dir
[10698]	1207	clean_valid_dir
[9483]	1208	JOB_FILE=${EXE_DIR}/run_job.sh
[9776]	1209	NPROC=16
[9483]	1210	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1211	cd ${EXE_DIR}
	1212	set_namelist namelist_cfg cn_exp \"AGRIF_LONG\"
	1213	set_namelist namelist_cfg nn_it000 1
[13559]	1214	set_namelist namelist_cfg nn_itend ${ITEND}
	1215	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10573]	1216	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1217	set_namelist 1_namelist_cfg cn_exp \"AGRIF_LONG\"
	1218	set_namelist 1_namelist_cfg nn_it000 1
[13559]	1219	set_namelist 1_namelist_cfg nn_itend ${ITEND}
	1220	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10573]	1221	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1222	set_namelist 2_namelist_cfg cn_exp \"AGRIF_LONG\"
	1223	set_namelist 2_namelist_cfg nn_it000 1
[13559]	1224	set_namelist 2_namelist_cfg nn_itend $(( ${ITEND} * 4 ))
	1225	set_namelist 2_namelist_cfg nn_stock $(( ${ITEND} * 4 / 2 ))
[10573]	1226	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[9776]	1227	set_namelist 3_namelist_cfg cn_exp \"AGRIF_LONG\"
	1228	set_namelist 3_namelist_cfg nn_it000 1
[13559]	1229	set_namelist 3_namelist_cfg nn_itend $(( ${ITEND} * 4 * 3 ))
	1230	set_namelist 3_namelist_cfg nn_stock $(( ${ITEND} * 4 * 3 / 2 ))
[10573]	1231	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9507]	1232
[13790]	1233	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9483]	1234	if [ ${USING_MPMD} == "yes" ] ; then
	1235	set_xio_using_server iodef.xml true
	1236	else
	1237	set_xio_using_server iodef.xml false
	1238	fi
	1239	cd ${SETTE_DIR}
[10755]	1240	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1241
	1242	cd ${SETTE_DIR}
	1243	export TEST_NAME="SHORT"
	1244	. ./prepare_exe_dir.sh
[10755]	1245	set_valid_dir
[10698]	1246	clean_valid_dir
[9483]	1247	cd ${EXE_DIR}
	1248	set_namelist namelist_cfg cn_exp \"AGRIF_SHORT\"
[13559]	1249	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	1250	set_namelist namelist_cfg nn_itend ${ITEND}
	1251	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10573]	1252	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1253	set_namelist namelist_cfg ln_rstart .true.
	1254	set_namelist namelist_cfg nn_rstctl 2
	1255	set_namelist 1_namelist_cfg cn_exp \"AGRIF_SHORT\"
[13559]	1256	set_namelist 1_namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	1257	set_namelist 1_namelist_cfg nn_itend ${ITEND}
	1258	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10573]	1259	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1260	set_namelist 1_namelist_cfg ln_rstart .true.
	1261	set_namelist 1_namelist_cfg nn_rstctl 2
	1262	set_namelist 2_namelist_cfg cn_exp \"AGRIF_SHORT\"
[13559]	1263	set_namelist 2_namelist_cfg nn_it000 $(( ${ITEND} * 4 / 2 + 1 ))
	1264	set_namelist 2_namelist_cfg nn_itend $(( ${ITEND} * 4 ))
	1265	set_namelist 2_namelist_cfg nn_stock $(( ${ITEND} * 4 / 2 ))
[10573]	1266	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1267	set_namelist 2_namelist_cfg ln_rstart .true.
	1268	set_namelist 2_namelist_cfg nn_rstctl 2
[9776]	1269	set_namelist 3_namelist_cfg cn_exp \"AGRIF_SHORT\"
[13559]	1270	set_namelist 3_namelist_cfg nn_it000 $(( ${ITEND} * 4 * 3 / 2 + 1 ))
	1271	set_namelist 3_namelist_cfg nn_itend $(( ${ITEND} * 4 * 3 ))
	1272	set_namelist 3_namelist_cfg nn_stock $(( ${ITEND} * 4 * 3 / 2 ))
[10573]	1273	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9776]	1274	set_namelist 3_namelist_cfg ln_rstart .true.
	1275	set_namelist 3_namelist_cfg nn_rstctl 2
[13559]	1276	set_namelist namelist_cfg cn_ocerst_in \"AGRIF_LONG_${ITRST}_restart\"
	1277	set_namelist namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_${ITRST}_restart_ice\"
	1278	set_namelist 1_namelist_cfg cn_ocerst_in \"AGRIF_LONG_${ITRST_1}_restart\"
	1279	set_namelist 1_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_${ITRST_1}_restart_ice\"
	1280	set_namelist 2_namelist_cfg cn_ocerst_in \"AGRIF_LONG_${ITRST_2}_restart\"
	1281	set_namelist 2_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_${ITRST_2}_restart_ice\"
	1282	set_namelist 3_namelist_cfg cn_ocerst_in \"AGRIF_LONG_${ITRST_3}_restart\"
	1283	set_namelist 3_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_${ITRST_3}_restart_ice\"
[9483]	1284
	1285	for (( i=1; i<=$NPROC; i++)) ; do
	1286	L_NPROC=$(( $i - 1 ))
	1287	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	1288	ln -sf ../LONG/AGRIF_LONG_${ITRST}_restart_${L_NPROC}.nc .
	1289	ln -sf ../LONG/AGRIF_LONG_${ITRST}_restart_ice_${L_NPROC}.nc .
	1290	ln -sf ../LONG/1_AGRIF_LONG_${ITRST_1}_restart_${L_NPROC}.nc .
	1291	ln -sf ../LONG/1_AGRIF_LONG_${ITRST_1}_restart_ice_${L_NPROC}.nc .
	1292	ln -sf ../LONG/2_AGRIF_LONG_${ITRST_2}_restart_${L_NPROC}.nc .
	1293	ln -sf ../LONG/2_AGRIF_LONG_${ITRST_2}_restart_ice_${L_NPROC}.nc .
	1294	ln -sf ../LONG/3_AGRIF_LONG_${ITRST_3}_restart_${L_NPROC}.nc .
	1295	ln -sf ../LONG/3_AGRIF_LONG_${ITRST_3}_restart_ice_${L_NPROC}.nc .
[9483]	1296	done
[13790]	1297	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9483]	1298	if [ ${USING_MPMD} == "yes" ] ; then
	1299	set_xio_using_server iodef.xml true
	1300	else
	1301	set_xio_using_server iodef.xml false
	1302	fi
	1303	cd ${SETTE_DIR}
[10755]	1304	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1305	cd ${SETTE_DIR}
	1306	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1307
[13568]	1308	fi
	1309
	1310	if [ ${config} == "AGRIF" ] && [ ${DO_REPRO} == "1" ] ; then
[9518]	1311	## Reproducibility tests
[11800]	1312	export TEST_NAME="REPRO_2_8"
[9658]	1313	cd ${MAIN_DIR}
[9483]	1314	cd ${SETTE_DIR}
	1315	. ./param.cfg
	1316	. ./all_functions.sh
	1317	. ./prepare_exe_dir.sh
[10755]	1318	set_valid_dir
[10698]	1319	clean_valid_dir
[9483]	1320	JOB_FILE=${EXE_DIR}/run_job.sh
[11800]	1321	NPROC=16
[9483]	1322	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1323	cd ${EXE_DIR}
[11800]	1324	set_namelist namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1325	set_namelist namelist_cfg nn_it000 1
[13559]	1326	set_namelist namelist_cfg nn_itend ${ITEND}
[11800]	1327	set_namelist namelist_cfg jpni 2
[9483]	1328	set_namelist namelist_cfg jpnj 8
[10573]	1329	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1330	set_namelist 1_namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1331	set_namelist 1_namelist_cfg nn_it000 1
[13559]	1332	set_namelist 1_namelist_cfg nn_itend ${ITEND}
[11800]	1333	set_namelist 1_namelist_cfg jpni 2
[9483]	1334	set_namelist 1_namelist_cfg jpnj 8
[10573]	1335	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1336	set_namelist 2_namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1337	set_namelist 2_namelist_cfg nn_it000 1
[13559]	1338	set_namelist 2_namelist_cfg nn_itend $(( ${ITEND} * 4 ))
[11800]	1339	set_namelist 2_namelist_cfg jpni 2
[9483]	1340	set_namelist 2_namelist_cfg jpnj 8
[10573]	1341	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1342	set_namelist 3_namelist_cfg cn_exp \"AGRIF_28\"
[9776]	1343	set_namelist 3_namelist_cfg nn_it000 1
[13559]	1344	set_namelist 3_namelist_cfg nn_itend $(( ${ITEND} * 4 * 3 ))
[11800]	1345	set_namelist 3_namelist_cfg jpni 2
[9776]	1346	set_namelist 3_namelist_cfg jpnj 8
[10573]	1347	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1348
[13790]	1349	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9483]	1350	if [ ${USING_MPMD} == "yes" ] ; then
	1351	set_xio_using_server iodef.xml true
	1352	else
	1353	set_xio_using_server iodef.xml false
	1354	fi
	1355	cd ${SETTE_DIR}
[10755]	1356	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1357	cd ${SETTE_DIR}
	1358	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1359
	1360	cd ${SETTE_DIR}
[11800]	1361	export TEST_NAME="REPRO_4_4"
[9483]	1362	. ./prepare_exe_dir.sh
[10755]	1363	set_valid_dir
[10698]	1364	clean_valid_dir
[9483]	1365	JOB_FILE=${EXE_DIR}/run_job.sh
[11800]	1366	NPROC=16
[9483]	1367	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1368	cd ${EXE_DIR}
[11800]	1369	set_namelist namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1370	set_namelist namelist_cfg nn_it000 1
[13559]	1371	set_namelist namelist_cfg nn_itend ${ITEND}
[11800]	1372	set_namelist namelist_cfg jpni 4
[9483]	1373	set_namelist namelist_cfg jpnj 4
[10573]	1374	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1375	set_namelist 1_namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1376	set_namelist 1_namelist_cfg nn_it000 1
[13559]	1377	set_namelist 1_namelist_cfg nn_itend ${ITEND}
[11800]	1378	set_namelist 1_namelist_cfg jpni 4
[9483]	1379	set_namelist 1_namelist_cfg jpnj 4
[10573]	1380	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1381	set_namelist 2_namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1382	set_namelist 2_namelist_cfg nn_it000 1
[13559]	1383	set_namelist 2_namelist_cfg nn_itend $(( ${ITEND} * 4 ))
[11800]	1384	set_namelist 2_namelist_cfg jpni 4
[9483]	1385	set_namelist 2_namelist_cfg jpnj 4
[10573]	1386	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[12428]	1387	set_namelist 3_namelist_cfg cn_exp \"AGRIF_44\"
[9776]	1388	set_namelist 3_namelist_cfg nn_it000 1
[13559]	1389	set_namelist 3_namelist_cfg nn_itend $(( ${ITEND} * 4 * 3 ))
[11800]	1390	set_namelist 3_namelist_cfg jpni 4
[9776]	1391	set_namelist 3_namelist_cfg jpnj 4
[10573]	1392	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1393
[13790]	1394	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9483]	1395	if [ ${USING_MPMD} == "yes" ] ; then
	1396	set_xio_using_server iodef.xml true
	1397	else
	1398	set_xio_using_server iodef.xml false
	1399	fi
	1400	cd ${SETTE_DIR}
[10755]	1401	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1402	cd ${SETTE_DIR}
	1403	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1404
[13568]	1405	fi
	1406
	1407	if [ ${config} == "AGRIF" ] && [ ${DO_CORRUPT} == "1" ] ; then
[9507]	1408	## test code corruption with AGRIF (phase 1) ==> Compile with key_agrif but run with no zoom
[13559]	1409	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	1410	then
	1411	ITEND=16 # 1d
	1412	else
	1413	ITEND=150 # 5d and 9h
	1414	fi
[9507]	1415	export TEST_NAME="ORCA2"
[9658]	1416	cd ${MAIN_DIR}
[9483]	1417	cd ${SETTE_DIR}
	1418	. ./param.cfg
	1419	. ./all_functions.sh
	1420	. ./prepare_exe_dir.sh
[10755]	1421	set_valid_dir
[10698]	1422	clean_valid_dir
[9483]	1423	JOB_FILE=${EXE_DIR}/run_job.sh
	1424	NPROC=32
	1425	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1426	cd ${EXE_DIR}
[9507]	1427	set_namelist namelist_cfg cn_exp \"ORCA2\"
[9483]	1428	set_namelist namelist_cfg nn_it000 1
[13559]	1429	set_namelist namelist_cfg nn_itend ${ITEND}
[10573]	1430	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9507]	1431
[9483]	1432	# Set the number of fine grids to zero:
	1433	sed -i "1s/.*/0/" ${EXE_DIR}/AGRIF_FixedGrids.in
	1434
[13790]	1435	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9483]	1436	if [ ${USING_MPMD} == "yes" ] ; then
	1437	set_xio_using_server iodef.xml true
	1438	else
	1439	set_xio_using_server iodef.xml false
	1440	fi
	1441	cd ${SETTE_DIR}
[10755]	1442	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1443	cd ${SETTE_DIR}
	1444	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1445
	1446	fi
	1447
[9525]	1448
[9776]	1449	## test code corruption with AGRIF (phase 2) ==> Compile without key_agrif (to be compared with AGRIF_DEMO_ST/ORCA2)
[13568]	1450	if [ ${config} == "AGRIF" ] && [ ${DO_CORRUPT} == "1" ] ; then
[9507]	1451	export TEST_NAME="ORCA2"
[9658]	1452	cd ${MAIN_DIR}
[12569]	1453	#
	1454	# syncronisation if target directory/file exist (not done by makenemo)
	1455	. ${SETTE_DIR}/all_functions.sh
	1456	sync_config AGRIF_DEMO AGRIF_DEMO_NOAGRIF_ST 'cfgs'
	1457	clean_config AGRIF_DEMO AGRIF_DEMO_NOAGRIF_ST 'cfgs'
	1458	#
[13507]	1459	. ./makenemo -m ${CMP_NAM} -n AGRIF_DEMO_NOAGRIF_ST -r AGRIF_DEMO -j 8 add_key "${ADD_KEYS}" del_key "key_agrif ${DEL_KEYS}"
[9483]	1460	cd ${SETTE_DIR}
	1461	. ./param.cfg
	1462	. ./all_functions.sh
	1463	. ./prepare_exe_dir.sh
[10755]	1464	set_valid_dir
[10698]	1465	clean_valid_dir
[9483]	1466	JOB_FILE=${EXE_DIR}/run_job.sh
	1467	NPROC=32
	1468	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1469	cd ${EXE_DIR}
[9507]	1470	set_namelist namelist_cfg cn_exp \"ORCA2\"
[9483]	1471	set_namelist namelist_cfg nn_it000 1
[13559]	1472	set_namelist namelist_cfg nn_itend ${ITEND}
[10573]	1473	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1474	#
[13790]	1475	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9483]	1476	if [ ${USING_MPMD} == "yes" ] ; then
	1477	set_xio_using_server iodef.xml true
	1478	else
	1479	set_xio_using_server iodef.xml false
	1480	fi
	1481	cd ${SETTE_DIR}
[10755]	1482	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1483	cd ${SETTE_DIR}
	1484	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1485
	1486	fi
	1487
[9553]	1488	# -------
[13382]	1489	# WED025
[9553]	1490	# -------
[13568]	1491	if [ ${config} == "WED025" ] && [ ${DO_RESTART} == "1" ] ; then
[9553]	1492	## Restartability tests
[13559]	1493	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	1494	then
	1495	ITEND=12 # 4h
	1496	else
	1497	ITEND=720 # 10 days
	1498	fi
	1499	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[9553]	1500	export TEST_NAME="LONG"
[9658]	1501	cd ${MAIN_DIR}
[12569]	1502	#
	1503	# syncronisation if target directory/file exist (not done by makenemo)
	1504	. ${SETTE_DIR}/all_functions.sh
[13382]	1505	sync_config WED025 WED025_ST 'cfgs'
	1506	clean_config WED025 WED025_ST 'cfgs'
[12569]	1507	#
[13382]	1508	. ./makenemo -m ${CMP_NAM} -n WED025_ST -r WED025 -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9553]	1509	cd ${SETTE_DIR}
	1510	. ./param.cfg
	1511	. ./all_functions.sh
	1512	. ./prepare_exe_dir.sh
[10755]	1513	set_valid_dir
[10698]	1514	clean_valid_dir
[9553]	1515	JOB_FILE=${EXE_DIR}/run_job.sh
	1516	NPROC=32
	1517	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1518	cd ${EXE_DIR}
[13382]	1519	set_namelist namelist_cfg cn_exp \"WED025_LONG\"
[9553]	1520	set_namelist namelist_cfg nn_it000 1
[13559]	1521	set_namelist namelist_cfg nn_itend ${ITEND}
	1522	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[13382]	1523	set_namelist namelist_cfg nn_date0 20000115
[9553]	1524	set_namelist namelist_cfg jpni 4
	1525	set_namelist namelist_cfg jpnj 8
[10573]	1526	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9744]	1527	#set_namelist namelist_ice_cfg ln_icediachk .true.
[13790]	1528	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9553]	1529	if [ ${USING_MPMD} == "yes" ] ; then
	1530	set_xio_using_server iodef.xml true
	1531	else
	1532	set_xio_using_server iodef.xml false
	1533	fi
	1534	cd ${SETTE_DIR}
[13382]	1535	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1536
	1537	cd ${SETTE_DIR}
	1538	export TEST_NAME="SHORT"
	1539	. ./prepare_exe_dir.sh
[10755]	1540	set_valid_dir
[10698]	1541	clean_valid_dir
[9553]	1542	cd ${EXE_DIR}
[13382]	1543	set_namelist namelist_cfg cn_exp \"WED025_SHORT\"
[13559]	1544	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	1545	set_namelist namelist_cfg nn_itend ${ITEND}
	1546	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[9553]	1547	set_namelist namelist_cfg ln_rstart .true.
	1548	set_namelist namelist_cfg nn_rstctl 2
	1549	set_namelist namelist_cfg jpni 4
	1550	set_namelist namelist_cfg jpnj 8
[10573]	1551	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13559]	1552	set_namelist namelist_cfg cn_ocerst_in \"WED025_LONG_${ITRST}_restart\"
	1553	set_namelist namelist_ice_cfg cn_icerst_in \"WED025_LONG_${ITRST}_restart_ice\"
[9553]	1554	for (( i=1; i<=$NPROC; i++)) ; do
	1555	L_NPROC=$(( $i - 1 ))
	1556	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	1557	ln -sf ../LONG/WED025_LONG_${ITRST}_restart_${L_NPROC}.nc .
	1558	ln -sf ../LONG/WED025_LONG_${ITRST}_restart_ice_${L_NPROC}.nc .
[9553]	1559	done
[13790]	1560	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9553]	1561	if [ ${USING_MPMD} == "yes" ] ; then
	1562	set_xio_using_server iodef.xml true
	1563	else
	1564	set_xio_using_server iodef.xml false
	1565	fi
	1566	cd ${SETTE_DIR}
[13382]	1567	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1568	cd ${SETTE_DIR}
	1569	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1570
[13568]	1571	fi
	1572
	1573	if [ ${config} == "WED025" ] && [ ${DO_REPRO} == "1" ] ; then
[9553]	1574	## Reproducibility tests
[13382]	1575	export TEST_NAME="REPRO_5_6"
[9658]	1576	cd ${MAIN_DIR}
[9553]	1577	cd ${SETTE_DIR}
	1578	. ./param.cfg
	1579	. ./all_functions.sh
	1580	. ./prepare_exe_dir.sh
[10755]	1581	set_valid_dir
[10698]	1582	clean_valid_dir
[9553]	1583	JOB_FILE=${EXE_DIR}/run_job.sh
	1584	NPROC=32
	1585	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1586	cd ${EXE_DIR}
[13382]	1587	set_namelist namelist_cfg cn_exp \"WED025_56\"
[9553]	1588	set_namelist namelist_cfg nn_it000 1
[13559]	1589	set_namelist namelist_cfg nn_itend ${ITEND}
[13382]	1590	set_namelist namelist_cfg nn_date0 20000115
	1591	set_namelist namelist_cfg jpni 6
	1592	set_namelist namelist_cfg jpnj 7
[10573]	1593	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13790]	1594	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9553]	1595	if [ ${USING_MPMD} == "yes" ] ; then
	1596	set_xio_using_server iodef.xml true
	1597	else
	1598	set_xio_using_server iodef.xml false
	1599	fi
	1600	cd ${SETTE_DIR}
[13382]	1601	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1602	cd ${SETTE_DIR}
	1603	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1604
	1605	cd ${SETTE_DIR}
	1606	export TEST_NAME="REPRO_8_4"
	1607	. ./prepare_exe_dir.sh
[10755]	1608	set_valid_dir
[10698]	1609	clean_valid_dir
[9553]	1610	JOB_FILE=${EXE_DIR}/run_job.sh
	1611	NPROC=32
	1612	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1613	cd ${EXE_DIR}
[13382]	1614	set_namelist namelist_cfg cn_exp \"WED025_84\"
[9553]	1615	set_namelist namelist_cfg nn_it000 1
[13559]	1616	set_namelist namelist_cfg nn_itend ${ITEND}
[13382]	1617	set_namelist namelist_cfg nn_date0 20000115
[9553]	1618	set_namelist namelist_cfg jpni 8
	1619	set_namelist namelist_cfg jpnj 4
[10573]	1620	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13790]	1621	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9553]	1622	if [ ${USING_MPMD} == "yes" ] ; then
	1623	set_xio_using_server iodef.xml true
	1624	else
	1625	set_xio_using_server iodef.xml false
	1626	fi
	1627	cd ${SETTE_DIR}
[13382]	1628	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1629	cd ${SETTE_DIR}
	1630	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1631	fi
	1632
	1633
[3520]	1634	done
[13568]	1635	#
	1636	# Return to SETTE_DIR (last fcm_job.sh will have moved to EXE_DIR)
	1637	cd ${SETTE_DIR}

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