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sette_reference-configurations.sh in utils/CI/sette – NEMO

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source: utils/CI/sette/sette_reference-configurations.sh @ 15159

Last change on this file since 15159 was 15159, checked in by acc, 3 years ago
Some enhancements to SETTE scripts: Added a -N option to sette.sh to set ln_nnogather=.false. (where appropriate) and a -T <TEST_ROOT> option to sette_eval.sh where <TEST_ROOT> is either LONG, SHORT or REPRO (default:LONG). This option determines which set of results to compare between validation sets. In the case of REPRO, the first expanded match will be used for each configuration (e.g. REPRO_4_8)
Property svn:executable set to ``*
File size: 68.7 KB

Rev	Line
[3520]	1	#!/bin/bash
[3708]	2	############################################################
[3520]	3	# Author : Simona Flavoni for NEMO
[4245]	4	# Contact: sflod@locean-ipsl.upmc.fr
	5	# 2013 : A.C. Coward added options for testing with XIOS in dettached mode
[3520]	6	#
	7	# sette.sh : principal script of SET TEsts for NEMO (SETTE)
	8	# ----------------------------------------------------------------------
	9	# NEMO/SETTE , NEMO Consortium (2010)
	10	# Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
	11	# ----------------------------------------------------------------------
	12	#
	13	#############################################################
[7744]	14	#set -vx
[3520]	15	set -o posix
	16	#set -u
	17	#set -e
[4245]	18	# ===========
[3520]	19	# DESCRIPTION
	20	# ===========
	21	#
	22	# Variables to be checked by user:
	23	#
[4245]	24	# COMPILER : name of compiler as defined in NEMOGCM/ARCH directory
	25	# BATCH_COMMAND_PAR : name of the command for submitting parallel batch jobs
	26	# BATCH_COMMAND_SEQ : name of the command for submitting sequential batch jobs
	27	# INTERACT_FLAG : flag to run in interactive mode "yes"
	28	# to run in batch mode "no"
	29	# MPIRUN_FLAG : flag to run in parallel (MPI) "yes"
	30	# to run in sequential mode (NB_PROC = 1) "no"
[13790]	31
[4245]	32	# NUM_XIOSERVERS : number of stand-alone IO servers to employ
	33	# set to zero if USING_MPMD="no"
[3520]	34	#
	35	# Principal script is sette.sh, that calls
	36	#
[4245]	37	# makenemo : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe
[9576]	38	# and links to nemo in ${CONFIG_NAME}/EXP00)
[3520]	39	#
	40	# param.cfg : sets and loads following directories:
[13568]	41	# This will have been run by the parent sette.sh and values exported here
[3520]	42	#
[4245]	43	# FORCING_DIR : is the directory for forcing files (tarfile)
	44	# INPUT_DIR : is the directory for input files storing
	45	# TMPDIR : is the temporary directory (if needed)
[3520]	46	# NEMO_VALIDATION_DIR : is the validation directory
	47	#
	48	# (NOTE: this file is the same for all configrations to be tested with sette)
	49	#
[4245]	50	# all_functions.sh : loads functions used by sette (note: new functions can be added here)
	51	# set_namelist : function declared in all_functions that sets namelist parameters
	52	# post_test_tidyup : creates validation storage directory and copies required output files
[9019]	53	# (run.stat and ocean.output) in it after execution of test.
[3520]	54	#
[4245]	55	# VALIDATION tree is:
[3520]	56	#
	57	# NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
	58	#
	59	# prepare_exe_dir.sh : defines and creates directory where the test is executed
[4245]	60	# execution directory takes name of TEST_NAME defined for every test
	61	# in sette.sh. (each test in executed in its own directory)
[3520]	62	#
[10755]	63	# set_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	64	#
[10698]	65	# clean_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	66	# ( not doing it could lead to false positive )
	67	#
[4245]	68	# prepare_job.sh : to generate the script run_job.sh
[3520]	69	#
[4245]	70	# fcm_job.sh : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
	71	# see sette.sh and BATCH_TEMPLATE directory
[3520]	72	#
[4245]	73	# NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which
	74	# can be found paths to the input tar file)
	75	# NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR}
	76	# directory
	77	# NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists
	78	# remain in ${NEW_CONF}/EXP00
[3520]	79	#
[4245]	80	# NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of
	81	# executed commands
[3520]	82	#
[4245]	83	# NOTE: if sette.sh is stopped in output.sette there is written the last command
	84	# executed by sette.sh
[3520]	85	#
[4245]	86	# example use: ./sette.sh
	87	#########################################################################################
[3520]	88	#
[10687]	89	# LOAD param value
[10717]	90	SETTE_DIR=$(cd $(dirname "$0"); pwd)
	91	MAIN_DIR=$(dirname $SETTE_DIR)
[7743]	92
[10687]	93	export BATCH_COMMAND_PAR=${BATCH_CMD}
	94	export BATCH_COMMAND_SEQ=${BATCH_CMD}
[4990]	95	export INTERACT_FLAG="no"
[4245]	96	export MPIRUN_FLAG="yes"
[14826]	97	#
[4245]	98	# Settings which control the use of stand alone servers (only relevant if using xios)
[3520]	99	#
[10632]	100	export NUM_XIOSERVERS=4
[11140]	101	export JOB_PREFIX=${JOB_PREFIX_MPMD}
[3520]	102	#
[4245]	103	if [ ${USING_MPMD} == "no" ]
	104	then
	105	export NUM_XIOSERVERS=0
[11140]	106	export JOB_PREFIX=${JOB_PREFIX_NOMPMD}
[4245]	107	fi
[3520]	108	#
	109
	110	# Directory to run the tests
[9602]	111	CONFIG_DIR0=${MAIN_DIR}/cfgs
	112	TOOLS_DIR=${MAIN_DIR}/tools
[3520]	113
	114	CMP_NAM=${1:-$COMPILER}
	115	# Copy job_batch_COMPILER file for specific compiler into job_batch_template
	116	cd ${SETTE_DIR}
[4245]	117	cp BATCH_TEMPLATE/${JOB_PREFIX}-${COMPILER} job_batch_template \|\| exit
[10747]	118	# Description of available configurations:
	119	# GYRE_PISCES :
	120	# ORCA2_ICE_PISCES :
	121	# ORCA2_OFF_PISCES :
	122	# AMM12 :
[14981]	123	# SAS : aka ORCA2_SAS_ICE
[10747]	124	# ORCA2_ICE_OBS :
[14981]	125	# AGRIF : AGRIF_DEMO: test AGRIF in a double zoom configuration in the nordic seas + 1 zoom in the eq. Pacific and
	126	# AGRIF_DEMO_NOAGRIF: check that key_agrif without zoom = no key_agrif
	127	# WED025 : regional configuration including sea-ice and tides (Spitzbergen)
[4147]	128
[14981]	129	. ./all_functions.sh
[13568]	130	for config in ${TEST_CONFIGS[@]}
[3520]	131	do
	132
[9518]	133	# -----------
	134	# GYRE_PISCES
	135	# -----------
[14981]	136	if [ ${config} == "GYRE_PISCES" ] ; then
	137	SETTE_CONFIG="GYRE_PISCES"${SETTE_STG}
[13559]	138	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	139	then
	140	ITEND=12 # 1 day
	141	else
	142	ITEND=1080 # 90 days
	143	fi
	144	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[9658]	145	cd ${MAIN_DIR}
[12569]	146	#
	147	# syncronisation if target directory/file exist (not done by makenemo)
[14981]	148	sync_config GYRE_PISCES ${SETTE_CONFIG} 'cfgs'
	149	clean_config GYRE_PISCES ${SETTE_CONFIG} 'cfgs'
[12569]	150	#
[14981]	151	# GYRE uses linssh so remove key_qco if added by default
	152	. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r GYRE_PISCES -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
	153	fi
	154	if [ ${config} == "GYRE_PISCES" ] && [ ${DO_RESTART} == "1" ] ; then
	155	## Restartability tests for GYRE_PISCES
	156	export TEST_NAME="LONG"
[3520]	157	cd ${SETTE_DIR}
[4252]	158	. ./prepare_exe_dir.sh
[10755]	159	set_valid_dir
[10698]	160	clean_valid_dir
[3520]	161	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	162	NPROC=8
[4245]	163	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[4147]	164	cd ${EXE_DIR}
[7715]	165	set_namelist namelist_cfg cn_exp \"GYREPIS_LONG\"
[4147]	166	set_namelist namelist_cfg nn_it000 1
[13559]	167	set_namelist namelist_cfg nn_itend ${ITEND}
	168	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	169	set_namelist namelist_cfg ln_linssh .true.
[9525]	170	set_namelist namelist_cfg jpni 2
	171	set_namelist namelist_cfg jpnj 4
[10573]	172	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	173	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[14981]	174	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	175	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	176	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	177	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	178	set_xio_using_server iodef.xml ${USING_MPMD}
[4245]	179	cd ${SETTE_DIR}
[10755]	180	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	181
	182	cd ${SETTE_DIR}
	183	export TEST_NAME="SHORT"
[4252]	184	. ./prepare_exe_dir.sh
[10755]	185	set_valid_dir
[10698]	186	clean_valid_dir
[3520]	187	cd ${EXE_DIR}
[7715]	188	set_namelist namelist_cfg cn_exp \"GYREPIS_SHORT\"
[13559]	189	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	190	set_namelist namelist_cfg nn_itend ${ITEND}
	191	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[4147]	192	set_namelist namelist_cfg ln_rstart .true.
	193	set_namelist namelist_cfg nn_rstctl 2
[7646]	194	set_namelist namelist_cfg ln_linssh .true.
[9525]	195	set_namelist namelist_cfg jpni 2
	196	set_namelist namelist_cfg jpnj 4
[10573]	197	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	198	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[7744]	199	set_namelist namelist_top_cfg ln_rsttr .true.
	200	set_namelist namelist_top_cfg nn_rsttr 2
[13559]	201	set_namelist namelist_cfg cn_ocerst_in \"GYREPIS_LONG_${ITRST}_restart\"
	202	set_namelist namelist_top_cfg cn_trcrst_in \"GYREPIS_LONG_${ITRST}_restart_trc\"
[14981]	203	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	204	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	205	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	206	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	207	set_xio_using_server iodef.xml ${USING_MPMD}
[3537]	208	for (( i=1; i<=$NPROC; i++)) ; do
	209	L_NPROC=$(( $i - 1 ))
	210	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	211	ln -sf ../LONG/GYREPIS_LONG_${ITRST}_restart_${L_NPROC}.nc .
	212	ln -sf ../LONG/GYREPIS_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
[3537]	213	done
[3520]	214	cd ${SETTE_DIR}
[10755]	215	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	216	cd ${SETTE_DIR}
[3532]	217	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	218
[13568]	219	fi
	220
	221	if [ ${config} == "GYRE_PISCES" ] && [ ${DO_REPRO} == "1" ] ; then
[9518]	222	## Reproducibility tests for GYRE_PISCES
[9525]	223	export TEST_NAME="REPRO_2_4"
[9658]	224	cd ${MAIN_DIR}
[3520]	225	cd ${SETTE_DIR}
[4252]	226	. ./prepare_exe_dir.sh
[10755]	227	set_valid_dir
[10698]	228	clean_valid_dir
[3520]	229	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	230	NPROC=8
[4245]	231	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	232	cd ${EXE_DIR}
[7715]	233	set_namelist namelist_cfg cn_exp \"GYREPIS_48\"
[4147]	234	set_namelist namelist_cfg nn_it000 1
[13559]	235	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	236	set_namelist namelist_cfg ln_linssh .true.
[9525]	237	set_namelist namelist_cfg jpni 2
	238	set_namelist namelist_cfg jpnj 4
[10573]	239	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	240	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[14981]	241	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	242	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	243	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	244	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	245	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	246	cd ${SETTE_DIR}
[10755]	247	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	248	cd ${SETTE_DIR}
	249	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	250
	251	cd ${SETTE_DIR}
[9525]	252	export TEST_NAME="REPRO_4_2"
[4252]	253	. ./prepare_exe_dir.sh
[10755]	254	set_valid_dir
[10698]	255	clean_valid_dir
[3680]	256	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	257	NPROC=8
[4245]	258	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	259	cd ${EXE_DIR}
[7715]	260	set_namelist namelist_cfg cn_exp \"GYREPIS_84\"
[4147]	261	set_namelist namelist_cfg nn_it000 1
[13559]	262	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	263	set_namelist namelist_cfg ln_linssh .true.
[9525]	264	set_namelist namelist_cfg jpni 4
	265	set_namelist namelist_cfg jpnj 2
[10573]	266	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	267	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[14981]	268	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	269	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	270	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	271	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	272	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	273	cd ${SETTE_DIR}
[10755]	274	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	275	cd ${SETTE_DIR}
	276	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3532]	277
[3520]	278	fi
	279
[9518]	280	# -----------------
[9663]	281	# ORCA2_ICE_PISCES
[9518]	282	# -----------------
[14981]	283	if [ ${config} == "ORCA2_ICE_PISCES" ] ; then
	284	SETTE_CONFIG="ORCA2_ICE_PISCES"${SETTE_STG}
[13559]	285	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	286	then
	287	ITEND=16 # 1 day
	288	else
	289	ITEND=992 # 62 days
	290	fi
	291	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[9658]	292	cd ${MAIN_DIR}
[12569]	293	#
	294	# syncronisation if target directory/file exist (not done by makenemo)
[14981]	295	sync_config ORCA2_ICE_PISCES ${SETTE_CONFIG} 'cfgs'
	296	clean_config ORCA2_ICE_PISCES ${SETTE_CONFIG} 'cfgs'
[12569]	297	#
[14981]	298	. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_ICE_PISCES -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
	299	fi
	300	if [ ${config} == "ORCA2_ICE_PISCES" ] && [ ${DO_RESTART} == "1" ] ; then
	301	## Restartability tests for ORCA2_ICE_PISCES
	302	export TEST_NAME="LONG"
[7646]	303	cd ${SETTE_DIR}
	304	. ./prepare_exe_dir.sh
[10755]	305	set_valid_dir
[10698]	306	clean_valid_dir
[7646]	307	JOB_FILE=${EXE_DIR}/run_job.sh
	308	NPROC=32
	309	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	310	cd ${EXE_DIR}
	311	set_namelist namelist_cfg cn_exp \"O2L3P_LONG\"
	312	set_namelist namelist_cfg nn_it000 1
[13559]	313	set_namelist namelist_cfg nn_itend ${ITEND}
	314	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	315	set_namelist namelist_cfg jpni 4
	316	set_namelist namelist_cfg jpnj 8
[10573]	317	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	318	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9933]	319	set_namelist namelist_cfg ln_use_calving .true.
[14244]	320	set_namelist namelist_cfg ln_wave .true.
[13948]	321	set_namelist namelist_cfg ln_cdgw .false.
[14244]	322	set_namelist namelist_cfg ln_sdw .true.
	323	set_namelist namelist_cfg ln_stcor .true.
[9904]	324	#
[14981]	325	set_namelist_opt namelist_cfg ln_icebergs ${USING_ICEBERGS} .true. .false.
	326	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	327	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
[15159]	328	set_namelist_opt namelist_cfg ln_nnogather ${USING_NOGATHER} .true. .false.
[14981]	329	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
[10687]	330	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[9904]	331	#
[9019]	332	set_namelist namelist_ice_cfg ln_icediachk .true.
[4147]	333	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	334	set_namelist namelist_top_cfg ln_trcbc .false.
	335	# put ln_ironsed, ln_hydrofe to false
[3520]	336	# if not you need input files, and for tests is not necessary
[4147]	337	set_namelist namelist_pisces_cfg ln_varpar .false.
	338	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	339	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	340	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[9203]	341	# put ln_pisdmp to false : no restoring to global mean value
	342	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[14981]	343	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	344	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	345	cd ${SETTE_DIR}
[10755]	346	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3532]	347
	348	cd ${SETTE_DIR}
[3520]	349	export TEST_NAME="SHORT"
[4252]	350	. ./prepare_exe_dir.sh
[10755]	351	set_valid_dir
[10698]	352	clean_valid_dir
[3520]	353	cd ${EXE_DIR}
[7646]	354	set_namelist namelist_cfg cn_exp \"O2L3P_SHORT\"
[13559]	355	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	356	set_namelist namelist_cfg nn_itend ${ITEND}
	357	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[4147]	358	set_namelist namelist_cfg ln_rstart .true.
	359	set_namelist namelist_cfg nn_rstctl 2
[7646]	360	set_namelist namelist_cfg jpni 4
	361	set_namelist namelist_cfg jpnj 8
[10573]	362	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	363	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9920]	364	set_namelist namelist_cfg nn_test_icebergs -1
[14244]	365	set_namelist namelist_cfg ln_wave .true.
[13948]	366	set_namelist namelist_cfg ln_cdgw .false.
[14244]	367	set_namelist namelist_cfg ln_sdw .true.
	368	set_namelist namelist_cfg ln_stcor .true.
[9904]	369	#
[14981]	370	set_namelist_opt namelist_cfg ln_icebergs ${USING_ICEBERGS} .true. .false.
	371	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	372	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
[15159]	373	set_namelist_opt namelist_cfg ln_nnogather ${USING_NOGATHER} .true. .false.
[14981]	374	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
[10732]	375	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[9904]	376	#
[9933]	377	set_namelist namelist_ice_cfg ln_icediachk .true.
[4147]	378	set_namelist namelist_top_cfg ln_rsttr .true.
	379	set_namelist namelist_top_cfg nn_rsttr 2
[13559]	380	set_namelist namelist_cfg cn_ocerst_in \"O2L3P_LONG_${ITRST}_restart\"
	381	set_namelist namelist_cfg cn_icbrst_in \"O2L3P_LONG_${ITRST}_restart_icb\"
	382	set_namelist namelist_top_cfg cn_trcrst_in \"O2L3P_LONG_${ITRST}_restart_trc\"
	383	set_namelist namelist_ice_cfg cn_icerst_in \"O2L3P_LONG_${ITRST}_restart_ice\"
[12428]	384	set_namelist namelist_top_cfg ln_trcbc .false.
	385	# put ln_ironsed, ln_hydrofe to false
[3520]	386	# if not you need input files, and for tests is not necessary
[4147]	387	set_namelist namelist_pisces_cfg ln_varpar .false.
	388	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	389	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	390	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	391	# put ln_pisdmp to false : no restoring to global mean value
[4147]	392	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[3537]	393	for (( i=1; i<=$NPROC; i++)) ; do
	394	L_NPROC=$(( $i - 1 ))
	395	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	396	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_${L_NPROC}.nc .
	397	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
	398	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_ice_${L_NPROC}.nc .
[9904]	399	if [ ${USING_ICEBERGS} == "yes" ]
	400	then
[13559]	401	ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_icb_${L_NPROC}.nc O2L3P_LONG_${ITRST}_restart_icb_${L_NPROC}.nc
[9904]	402	fi
[3537]	403	done
[14981]	404	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	405	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	406	cd ${SETTE_DIR}
[10755]	407	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	408	cd ${SETTE_DIR}
[3532]	409	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	410
[13568]	411	fi
	412
	413	if [ ${config} == "ORCA2_ICE_PISCES" ] && [ ${DO_REPRO} == "1" ] ; then
[9663]	414	## Reproducibility tests for ORCA2_ICE_PISCES
[7646]	415	export TEST_NAME="REPRO_4_8"
[9658]	416	cd ${MAIN_DIR}
[3520]	417	cd ${SETTE_DIR}
[4252]	418	. ./prepare_exe_dir.sh
[10755]	419	set_valid_dir
[10698]	420	clean_valid_dir
[3520]	421	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	422	NPROC=32
[4245]	423	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	424	cd ${EXE_DIR}
[9019]	425	set_namelist namelist_cfg cn_exp \"O2L3P_48\"
[4147]	426	set_namelist namelist_cfg nn_it000 1
[13559]	427	set_namelist namelist_cfg nn_itend ${ITEND}
[4147]	428	set_namelist namelist_cfg jpni 4
[7646]	429	set_namelist namelist_cfg jpnj 8
[10573]	430	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	431	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[14244]	432	set_namelist namelist_cfg ln_wave .true.
[13948]	433	set_namelist namelist_cfg ln_cdgw .false.
[14244]	434	set_namelist namelist_cfg ln_sdw .true.
	435	set_namelist namelist_cfg ln_stcor .true.
[10189]	436
[14981]	437	set_namelist_opt namelist_cfg ln_icebergs ${USING_ICEBERGS} .true. .false.
	438	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	439	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
[15159]	440	set_namelist_opt namelist_cfg ln_nnogather ${USING_NOGATHER} .true. .false.
[14981]	441	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
[10687]	442	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
	443
[4147]	444	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	445	set_namelist namelist_top_cfg ln_trcbc .false.
	446	# put ln_ironsed, ln_hydrofe to false
[3520]	447	# if not you need input files, and for tests is not necessary
[4147]	448	set_namelist namelist_pisces_cfg ln_varpar .false.
	449	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	450	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	451	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	452	# put ln_pisdmp to false : no restoring to global mean value
[4147]	453	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[14981]	454	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	455	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	456	cd ${SETTE_DIR}
[10755]	457	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	458	cd ${SETTE_DIR}
[3532]	459	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	460
	461	cd ${SETTE_DIR}
[7646]	462	export TEST_NAME="REPRO_8_4"
[4252]	463	. ./prepare_exe_dir.sh
[10755]	464	set_valid_dir
[10698]	465	clean_valid_dir
[3680]	466	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	467	NPROC=32
[4245]	468	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	469	cd ${EXE_DIR}
[9019]	470	set_namelist namelist_cfg cn_exp \"O2L3P_84\"
[4147]	471	set_namelist namelist_cfg nn_it000 1
[13559]	472	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	473	set_namelist namelist_cfg jpni 8
	474	set_namelist namelist_cfg jpnj 4
[10573]	475	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	476	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[14244]	477	set_namelist namelist_cfg ln_wave .true.
[13948]	478	set_namelist namelist_cfg ln_cdgw .false.
[14244]	479	set_namelist namelist_cfg ln_sdw .true.
	480	set_namelist namelist_cfg ln_stcor .true.
[10687]	481
[14981]	482	set_namelist_opt namelist_cfg ln_icebergs ${USING_ICEBERGS} .true. .false.
	483	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	484	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
[15159]	485	set_namelist_opt namelist_cfg ln_nnogather ${USING_NOGATHER} .true. .false.
[14981]	486	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
[10687]	487	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
	488
[4147]	489	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	490	set_namelist namelist_top_cfg ln_trcbc .false.
	491	# put ln_ironsed, ln_hydrofe to false
[3520]	492	# if not you need input files, and for tests is not necessary
[4147]	493	set_namelist namelist_pisces_cfg ln_varpar .false.
	494	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	495	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	496	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	497	# put ln_pisdmp to false : no restoring to global mean value
[4147]	498	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[14981]	499	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	500	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	501	cd ${SETTE_DIR}
[10755]	502	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	503	cd ${SETTE_DIR}
	504	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	505	fi
	506
[9518]	507	# ----------------
	508	# ORCA2_OFF_PISCES
	509	# ----------------
[14981]	510	if [ ${config} == "ORCA2_OFF_PISCES" ] ; then
	511	SETTE_CONFIG="ORCA2_OFF_PISCES"${SETTE_STG}
[13559]	512	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	513	then
	514	ITEND=16 # 4 days
	515	else
	516	ITEND=380 # 95 days
	517	fi
	518	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[9658]	519	cd ${MAIN_DIR}
[12569]	520	#
	521	# syncronisation if target directory/file exist (not done by makenemo)
[14981]	522	sync_config ${SETTE_CONFIG} ORCA2_OFF_PISCES_ST 'cfgs'
	523	clean_config ${SETTE_CONFIG} ORCA2_OFF_PISCES_ST 'cfgs'
[12569]	524	#
[14981]	525	# ORCA2_OFF_PISCES uses linssh so remove key_qco if added by default
	526	. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_OFF_PISCES -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
	527	fi
	528	if [ ${config} == "ORCA2_OFF_PISCES" ] && [ ${DO_RESTART} == "1" ] ; then
	529	## Restartability tests for ORCA2_OFF_PISCES
	530	export TEST_NAME="LONG"
[3520]	531	cd ${SETTE_DIR}
[4252]	532	. ./prepare_exe_dir.sh
[10755]	533	set_valid_dir
[10698]	534	clean_valid_dir
[3520]	535	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	536	NPROC=32
[4245]	537	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	538	cd ${EXE_DIR}
[4147]	539	set_namelist namelist_cfg cn_exp \"OFFP_LONG\"
	540	set_namelist namelist_cfg nn_it000 1
[13559]	541	set_namelist namelist_cfg nn_itend ${ITEND}
	542	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	543	set_namelist namelist_cfg jpni 4
	544	set_namelist namelist_cfg jpnj 8
[10573]	545	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	546	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	547	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	548	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	549	set_namelist namelist_top_cfg ln_trcbc .false.
	550	# put ln_ironsed, ln_hydrofe to false
[3520]	551	# if not you need input files, and for tests is not necessary
[4147]	552	set_namelist namelist_pisces_cfg ln_varpar .false.
	553	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	554	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	555	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	556	# put ln_pisdmp to false : no restoring to global mean value
[4147]	557	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[14981]	558	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	559	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	560	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	561	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	562	cd ${SETTE_DIR}
[10755]	563	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	564
	565	cd ${SETTE_DIR}
	566	export TEST_NAME="SHORT"
[4252]	567	. ./prepare_exe_dir.sh
[10755]	568	set_valid_dir
[10698]	569	clean_valid_dir
[3520]	570	cd ${EXE_DIR}
[4147]	571	set_namelist namelist_cfg cn_exp \"OFFP_SHORT\"
[13559]	572	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	573	set_namelist namelist_cfg nn_itend ${ITEND}
	574	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	575	set_namelist namelist_cfg jpni 4
	576	set_namelist namelist_cfg jpnj 8
[10573]	577	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	578	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	579	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	580	set_namelist namelist_top_cfg ln_rsttr .true.
	581	set_namelist namelist_top_cfg nn_rsttr 2
[13559]	582	set_namelist namelist_top_cfg cn_trcrst_in \"OFFP_LONG_${ITRST}_restart_trc\"
[3537]	583	for (( i=1; i<=$NPROC; i++)) ; do
	584	L_NPROC=$(( $i - 1 ))
	585	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	586	ln -sf ../LONG/OFFP_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
[3537]	587	done
[12428]	588	set_namelist namelist_top_cfg ln_trcbc .false.
	589	# put ln_ironsed, ln_hydrofe to false
[3520]	590	# if not you need input files, and for tests is not necessary
[4147]	591	set_namelist namelist_pisces_cfg ln_varpar .false.
	592	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	593	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	594	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	595	# put ln_pisdmp to false : no restoring to global mean value
[4147]	596	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[14981]	597	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	598	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	599	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	600	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	601	cd ${SETTE_DIR}
[10755]	602	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	603	cd ${SETTE_DIR}
	604	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	605
[13568]	606	fi
	607
	608	if [ ${config} == "ORCA2_OFF_PISCES" ] && [ ${DO_REPRO} == "1" ] ; then
[9518]	609	## Reproducibility tests for ORCA2_OFF_PISCES
[7646]	610	export TEST_NAME="REPRO_4_8"
[9658]	611	cd ${MAIN_DIR}
[3520]	612	cd ${SETTE_DIR}
[4252]	613	. ./prepare_exe_dir.sh
[10755]	614	set_valid_dir
[10698]	615	clean_valid_dir
[3520]	616	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	617	NPROC=32
[4245]	618	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	619	cd ${EXE_DIR}
[9019]	620	set_namelist namelist_cfg cn_exp \"OFFP_48\"
[4147]	621	set_namelist namelist_cfg nn_it000 1
[13559]	622	set_namelist namelist_cfg nn_itend ${ITEND}
[4147]	623	set_namelist namelist_cfg jpni 4
[7646]	624	set_namelist namelist_cfg jpnj 8
[10573]	625	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	626	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	627	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	628	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	629	set_namelist namelist_top_cfg ln_trcbc .false.
	630	# put ln_ironsed, ln_hydrofe to false
[3520]	631	# if not you need input files, and for tests is not necessary
[4147]	632	set_namelist namelist_pisces_cfg ln_varpar .false.
	633	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	634	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	635	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	636	# put ln_pisdmp to false : no restoring to global mean value
[4147]	637	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[14981]	638	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	639	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	640	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	641	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	642	cd ${SETTE_DIR}
[10755]	643	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	644	cd ${SETTE_DIR}
[3532]	645	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	646
	647	cd ${SETTE_DIR}
[7646]	648	export TEST_NAME="REPRO_8_4"
[4252]	649	. ./prepare_exe_dir.sh
[10755]	650	set_valid_dir
[10698]	651	clean_valid_dir
[3680]	652	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	653	NPROC=32
[4245]	654	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	655	cd ${EXE_DIR}
[9019]	656	set_namelist namelist_cfg cn_exp \"OFFP_84\"
[4147]	657	set_namelist namelist_cfg nn_it000 1
[13559]	658	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	659	set_namelist namelist_cfg jpni 8
	660	set_namelist namelist_cfg jpnj 4
[10573]	661	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	662	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	663	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	664	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	665	set_namelist namelist_top_cfg ln_trcbc .false.
	666	# put ln_ironsed, ln_hydrofe to false
[3520]	667	# if not you need input files, and for tests is not necessary
[4147]	668	set_namelist namelist_pisces_cfg ln_varpar .false.
	669	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	670	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	671	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	672	# put ln_pisdmp to false : no restoring to global mean value
[4147]	673	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[14981]	674	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	675	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	676	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	677	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	678	cd ${SETTE_DIR}
[10755]	679	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	680	cd ${SETTE_DIR}
	681	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	682	fi
	683
[9518]	684	# -----
	685	# AMM12
	686	# -----
[14981]	687	if [ ${config} == "AMM12" ] ; then
	688	SETTE_CONFIG="AMM12"${SETTE_STG}
[13559]	689	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	690	then
	691	ITEND=12 # 3 h
	692	else
	693	ITEND=576 # 4 days
	694	fi
	695	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[9658]	696	cd ${MAIN_DIR}
[12569]	697	#
	698	# syncronisation if target directory/file exist (not done by makenemo)
[14981]	699	sync_config AMM12 ${SETTE_CONFIG} 'cfgs'
	700	clean_config AMM12 ${SETTE_CONFIG} 'cfgs'
[12569]	701	#
[14981]	702	. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r AMM12 -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
	703	fi
	704	if [ ${config} == "AMM12" ] && [ ${DO_RESTART} == "1" ] ; then
	705	## Restartability tests for AMM12
	706	export TEST_NAME="LONG"
[3520]	707	cd ${SETTE_DIR}
[4252]	708	. ./prepare_exe_dir.sh
[10755]	709	set_valid_dir
[10698]	710	clean_valid_dir
[3520]	711	JOB_FILE=${EXE_DIR}/run_job.sh
	712	NPROC=32
[4245]	713	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	714	cd ${EXE_DIR}
[9019]	715	set_namelist namelist_cfg cn_exp \"AMM12_LONG\"
[4147]	716	set_namelist namelist_cfg nn_it000 1
[13559]	717	set_namelist namelist_cfg nn_itend ${ITEND}
	718	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	719	set_namelist namelist_cfg jpni 4
	720	set_namelist namelist_cfg jpnj 8
[10573]	721	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[14981]	722	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	723	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	724	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	725	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	726	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	727	cd ${SETTE_DIR}
[10755]	728	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	729
	730	cd ${SETTE_DIR}
[3532]	731	export TEST_NAME="SHORT"
[4379]	732	. ./prepare_exe_dir.sh
[10755]	733	set_valid_dir
[10698]	734	clean_valid_dir
[3520]	735	cd ${EXE_DIR}
[9019]	736	set_namelist namelist_cfg cn_exp \"AMM12_SHORT\"
[13559]	737	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	738	set_namelist namelist_cfg nn_itend ${ITEND}
	739	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	740	set_namelist namelist_cfg jpni 4
	741	set_namelist namelist_cfg jpnj 8
[10573]	742	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4147]	743	set_namelist namelist_cfg ln_rstart .true.
	744	set_namelist namelist_cfg nn_rstctl 2
[13559]	745	set_namelist namelist_cfg cn_ocerst_in \"AMM12_LONG_${ITRST}_restart\"
[4252]	746	set_namelist namelist_cfg nn_date0 20120102
[3537]	747	for (( i=1; i<=$NPROC; i++)) ; do
	748	L_NPROC=$(( $i - 1 ))
	749	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	750	ln -sf ../LONG/AMM12_LONG_${ITRST}_restart_${L_NPROC}.nc .
[3537]	751	done
[14981]	752	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	753	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	754	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	755	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	756	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	757	cd ${SETTE_DIR}
[10755]	758	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	759	cd ${SETTE_DIR}
[3532]	760	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	761
[13568]	762	fi
	763
	764	if [ ${config} == "AMM12" ] && [ ${DO_REPRO} == "1" ] ; then
[3680]	765	## Reproducibility tests for AMM12
	766	export TEST_NAME="REPRO_8_4"
[9658]	767	cd ${MAIN_DIR}
[3520]	768	cd ${SETTE_DIR}
[4252]	769	. ./prepare_exe_dir.sh
[10755]	770	set_valid_dir
[10698]	771	clean_valid_dir
[3520]	772	JOB_FILE=${EXE_DIR}/run_job.sh
	773	NPROC=32
[4245]	774	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	775	cd ${EXE_DIR}
[9019]	776	set_namelist namelist_cfg cn_exp \"AMM12_84\"
[4147]	777	set_namelist namelist_cfg nn_it000 1
[13559]	778	set_namelist namelist_cfg nn_itend ${ITEND}
[4147]	779	set_namelist namelist_cfg jpni 8
	780	set_namelist namelist_cfg jpnj 4
[10573]	781	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[14981]	782	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	783	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	784	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	785	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	786	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	787	cd ${SETTE_DIR}
[10755]	788	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	789	cd ${SETTE_DIR}
	790	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	791
	792	cd ${SETTE_DIR}
[3680]	793	export TEST_NAME="REPRO_4_8"
[4252]	794	. ./prepare_exe_dir.sh
[10755]	795	set_valid_dir
[10698]	796	clean_valid_dir
[5478]	797	JOB_FILE=${EXE_DIR}/run_job.sh
	798	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	799	cd ${EXE_DIR}
[9019]	800	set_namelist namelist_cfg cn_exp \"AMM12_48\"
[4147]	801	set_namelist namelist_cfg nn_it000 1
[13559]	802	set_namelist namelist_cfg nn_itend ${ITEND}
[4147]	803	set_namelist namelist_cfg jpni 4
	804	set_namelist namelist_cfg jpnj 8
[10573]	805	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[14981]	806	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	807	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	808	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	809	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	810	set_xio_using_server iodef.xml ${USING_MPMD}
[3520]	811	cd ${SETTE_DIR}
[10755]	812	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	813	cd ${SETTE_DIR}
[3532]	814	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	815	fi
	816
	817
[9518]	818	# ---------
[14981]	819	# ORCA2_SAS_ICE
[9518]	820	# ---------
[14981]	821	if [ ${config} == "SAS" ] ; then
	822	SETTE_CONFIG="ORCA2_SAS_ICE"${SETTE_STG}
[13559]	823	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	824	then
	825	ITEND=16 # 1 day
	826	else
	827	ITEND=256 # 16 days
	828	fi
	829	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[9658]	830	cd ${MAIN_DIR}
[12569]	831	#
	832	# syncronisation if target directory/file exist (not done by makenemo)
[14981]	833	sync_config ORCA2_SAS_ICE ${SETTE_CONFIG} 'cfgs'
	834	clean_config ORCA2_SAS_ICE ${SETTE_CONFIG} 'cfgs'
[12569]	835	#
[14981]	836	# ORCA2_SAS_ICE uses linssh so remove key_qco if added by default
	837	. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_SAS_ICE -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
	838	fi
	839	if [ ${config} == "SAS" ] && [ ${DO_RESTART} == "1" ] ; then
	840	## Restartability tests
	841	export TEST_NAME="LONG"
[4147]	842	cd ${SETTE_DIR}
[4252]	843	. ./prepare_exe_dir.sh
[10755]	844	set_valid_dir
[10698]	845	clean_valid_dir
[4147]	846	JOB_FILE=${EXE_DIR}/run_job.sh
	847	NPROC=32
[7646]	848	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[4147]	849	cd ${EXE_DIR}
	850	set_namelist namelist_cfg cn_exp \"SAS\"
	851	set_namelist namelist_cfg nn_it000 1
[13559]	852	set_namelist namelist_cfg nn_itend ${ITEND}
	853	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	854	set_namelist namelist_cfg jpni 4
	855	set_namelist namelist_cfg jpnj 8
[10573]	856	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9019]	857	set_namelist namelist_ice_cfg ln_icediachk .true.
[14981]	858	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	859	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	860	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	861	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	862	set_xio_using_server iodef.xml ${USING_MPMD}
[4147]	863	cd ${SETTE_DIR}
[10755]	864	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4147]	865
	866	cd ${SETTE_DIR}
	867	export TEST_NAME="SHORT"
[4252]	868	. ./prepare_exe_dir.sh
[10755]	869	set_valid_dir
[10698]	870	clean_valid_dir
[4147]	871	cd ${EXE_DIR}
	872	set_namelist namelist_cfg cn_exp \"SAS\"
[13559]	873	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	874	set_namelist namelist_cfg nn_itend ${ITEND}
	875	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[7646]	876	set_namelist namelist_cfg jpni 4
	877	set_namelist namelist_cfg jpnj 8
[10573]	878	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[7646]	879	set_namelist namelist_cfg ln_rstart .true.
[4147]	880	set_namelist namelist_cfg nn_rstctl 2
[9019]	881	set_namelist namelist_cfg nn_date0 010109
[13559]	882	set_namelist namelist_cfg cn_ocerst_in \"SAS_${ITRST}_restart\"
	883	set_namelist namelist_ice_cfg cn_icerst_in \"SAS_${ITRST}_restart_ice\"
[14981]	884	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	885	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	886	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	887	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	888	set_xio_using_server iodef.xml ${USING_MPMD}
[7646]	889	for (( i=1; i<=$NPROC; i++)) ; do
	890	L_NPROC=$(( $i - 1 ))
	891	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	892	ln -sf ../LONG/SAS_${ITRST}_restart_${L_NPROC}.nc .
	893	ln -sf ../LONG/SAS_${ITRST}_restart_ice_${L_NPROC}.nc .
[7646]	894	done
[4147]	895	cd ${SETTE_DIR}
[10755]	896	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4147]	897	cd ${SETTE_DIR}
	898	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	899
[13568]	900	fi
	901
	902	if [ ${config} == "SAS" ] && [ ${DO_REPRO} == "1" ] ; then
[9518]	903	## Reproducibility tests
[13559]	904	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	905	then
	906	ITEND=16 # 1 day
	907	else
	908	ITEND=80 # 5 days
	909	fi
[9518]	910	export TEST_NAME="REPRO_4_8"
[9658]	911	cd ${MAIN_DIR}
[4990]	912	cd ${SETTE_DIR}
	913	. ./prepare_exe_dir.sh
[10755]	914	set_valid_dir
[10698]	915	clean_valid_dir
[4990]	916	JOB_FILE=${EXE_DIR}/run_job.sh
[9518]	917	NPROC=32
[4990]	918	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	919	cd ${EXE_DIR}
[9518]	920	set_namelist namelist_cfg cn_exp \"SAS_48\"
[4990]	921	set_namelist namelist_cfg nn_it000 1
[13559]	922	set_namelist namelist_cfg nn_itend ${ITEND}
[9518]	923	set_namelist namelist_cfg jpni 4
	924	set_namelist namelist_cfg jpnj 8
[10573]	925	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[14981]	926	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	927	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	928	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	929	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	930	set_xio_using_server iodef.xml ${USING_MPMD}
[4990]	931	cd ${SETTE_DIR}
[10755]	932	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	933	cd ${SETTE_DIR}
	934	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[9019]	935
[4990]	936	cd ${SETTE_DIR}
[7646]	937	export TEST_NAME="REPRO_8_4"
[4990]	938	. ./prepare_exe_dir.sh
[10755]	939	set_valid_dir
[10698]	940	clean_valid_dir
[4990]	941	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	942	NPROC=32
[4990]	943	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	944	cd ${EXE_DIR}
[9518]	945	set_namelist namelist_cfg cn_exp \"SAS_84\"
[4990]	946	set_namelist namelist_cfg nn_it000 1
[13559]	947	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	948	set_namelist namelist_cfg jpni 8
	949	set_namelist namelist_cfg jpnj 4
[10573]	950	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[14981]	951	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	952	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	953	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	954	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	955	set_xio_using_server iodef.xml ${USING_MPMD}
[4990]	956	cd ${SETTE_DIR}
[10755]	957	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	958	cd ${SETTE_DIR}
	959	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	960
	961	fi
	962
[9518]	963
	964	# --------------
[9663]	965	# ORCA2_ICE_OBS
[9518]	966	# --------------
[4990]	967	## Test assimilation interface code, OBS and ASM for reproducibility
	968	## Restartability not tested (ASM code not restartable while increments are being applied)
[14981]	969	if [ ${config} == "ORCA2_ICE_OBS" ] ; then
	970	SETTE_CONFIG="ORCA2_ICE_OBS"${SETTE_STG}
[9518]	971	## Reproducibility tests
[13559]	972	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	973	then
	974	ITEND=16 # 1 day
	975	else
	976	ITEND=80 # 5 days
	977	fi
[9658]	978	cd ${MAIN_DIR}
[12569]	979	#
	980	# syncronisation if target directory/file exist (not done by makenemo)
[14981]	981	sync_config ORCA2_ICE_PISCES ${SETTE_CONFIG} 'cfgs'
	982	clean_config ORCA2_ICE_PISCES ${SETTE_CONFIG} 'cfgs'
[12569]	983	#
[14981]	984	. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_ICE_PISCES -d "OCE ICE" -j ${CMPL_CORES} add_key "key_asminc ${ADD_KEYS}" del_key "key_top ${DEL_KEYS}"
	985	fi
	986	if [ ${config} == "ORCA2_ICE_OBS" ] && [ ${DO_RESTART} == "1" ] ; then
	987	## Reproducibility tests
	988	export TEST_NAME="REPRO_4_8"
[4990]	989	cd ${SETTE_DIR}
	990	. ./prepare_exe_dir.sh
[10755]	991	set_valid_dir
[10698]	992	clean_valid_dir
[4990]	993	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	994	NPROC=32
[4990]	995	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	996	cd ${EXE_DIR}
[9019]	997	set_namelist namelist_cfg cn_exp \"O2L3OBS_48\"
[4990]	998	set_namelist namelist_cfg nn_it000 1
[13559]	999	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	1000	set_namelist namelist_cfg ln_read_cfg .true.
[4990]	1001	set_namelist namelist_cfg jpni 4
[7646]	1002	set_namelist namelist_cfg jpnj 8
[10573]	1003	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	1004	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[6140]	1005	set_namelist namelist_cfg ln_diaobs .true.
[4990]	1006	set_namelist namelist_cfg ln_t3d .true.
	1007	set_namelist namelist_cfg ln_s3d .true.
	1008	set_namelist namelist_cfg ln_sst .true.
	1009	set_namelist namelist_cfg ln_sla .true.
[6140]	1010	set_namelist namelist_cfg ln_sic .true.
	1011	set_namelist namelist_cfg ln_vel3d .true.
[4990]	1012	set_namelist namelist_cfg ln_bkgwri .true.
	1013	set_namelist namelist_cfg ln_trainc .true.
	1014	set_namelist namelist_cfg ln_dyninc .true.
	1015	set_namelist namelist_cfg ln_sshinc .true.
	1016	set_namelist namelist_cfg ln_asmiau .true.
[9663]	1017	#remove all useless options for pisces (due to ORCA2_ICE_PISCES reference configuration)
[7722]	1018	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	1019	set_namelist namelist_top_cfg ln_trcbc .false.
[7722]	1020	# put ln_ironsed, ln_river, ln_ndepo, ln_dust to false
	1021	# if not you need input files, and for tests is not necessary
	1022	set_namelist namelist_pisces_cfg ln_varpar .false.
	1023	set_namelist namelist_pisces_cfg ln_ironsed .false.
	1024	set_namelist namelist_pisces_cfg ln_ironice .false.
	1025	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[14981]	1026	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	1027	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1028	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
[15159]	1029	set_namelist_opt namelist_cfg ln_nnogather ${USING_NOGATHER} .true. .false.
[14981]	1030	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1031	set_xio_using_server iodef.xml ${USING_MPMD}
[4990]	1032	cd ${SETTE_DIR}
[10755]	1033	. ./prepare_job.sh input_ORCA2_ICE_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1034	cd ${SETTE_DIR}
	1035	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1036
	1037	cd ${SETTE_DIR}
[7646]	1038	export TEST_NAME="REPRO_8_4"
[4990]	1039	. ./prepare_exe_dir.sh
[10755]	1040	set_valid_dir
[10698]	1041	clean_valid_dir
[4990]	1042	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	1043	NPROC=32
[4990]	1044	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1045	cd ${EXE_DIR}
[9019]	1046	set_namelist namelist_cfg cn_exp \"O2L3OBS_84\"
[4990]	1047	set_namelist namelist_cfg nn_it000 1
[13559]	1048	set_namelist namelist_cfg nn_itend ${ITEND}
[7646]	1049	set_namelist namelist_cfg ln_read_cfg .true.
	1050	set_namelist namelist_cfg jpni 8
	1051	set_namelist namelist_cfg jpnj 4
[10573]	1052	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	1053	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[6140]	1054	set_namelist namelist_cfg ln_diaobs .true.
[4990]	1055	set_namelist namelist_cfg ln_t3d .true.
	1056	set_namelist namelist_cfg ln_s3d .true.
	1057	set_namelist namelist_cfg ln_sst .true.
	1058	set_namelist namelist_cfg ln_sla .true.
[6140]	1059	set_namelist namelist_cfg ln_sic .true.
	1060	set_namelist namelist_cfg ln_vel3d .true.
[4990]	1061	set_namelist namelist_cfg ln_bkgwri .true.
	1062	set_namelist namelist_cfg ln_trainc .true.
	1063	set_namelist namelist_cfg ln_dyninc .true.
	1064	set_namelist namelist_cfg ln_sshinc .true.
	1065	set_namelist namelist_cfg ln_asmiau .true.
[9663]	1066	#remove all useless options for pisces (due to ORCA2_ICE_PISCES reference configuration)
[7722]	1067	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	1068	set_namelist namelist_top_cfg ln_trcbc .false.
[7722]	1069	# put ln_ironsed, ln_river, ln_ndepo, ln_dust to false
	1070	# if not you need input files, and for tests is not necessary
	1071	set_namelist namelist_pisces_cfg ln_varpar .false.
	1072	set_namelist namelist_pisces_cfg ln_ironsed .false.
	1073	set_namelist namelist_pisces_cfg ln_ironice .false.
	1074	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[14981]	1075	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	1076	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1077	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
[15159]	1078	set_namelist_opt namelist_cfg ln_nnogather ${USING_NOGATHER} .true. .false.
[14981]	1079	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1080	set_xio_using_server iodef.xml ${USING_MPMD}
[4990]	1081	cd ${SETTE_DIR}
[10755]	1082	. ./prepare_job.sh input_ORCA2_ICE_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1083	cd ${SETTE_DIR}
	1084	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1085	fi
[5589]	1086
[9483]	1087	# ------------
[9663]	1088	# AGRIF ICE
[9483]	1089	# -----------
[14981]	1090	if [ ${config} == "AGRIF" ] ; then
	1091	SETTE_CONFIG="AGRIF_DEMO"${SETTE_STG}
[13559]	1092	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	1093	then
	1094	ITEND=4 # 6h
	1095	else
	1096	ITEND=20 # 1d and 6h
	1097	fi
	1098	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
	1099	ITRST_1=$( printf "%08d" $(( ${ITEND} / 2 )) )
	1100	ITRST_2=$( printf "%08d" $(( ${ITEND} * 4 / 2 )) )
	1101	ITRST_3=$( printf "%08d" $(( ${ITEND} * 4 * 3 / 2 )) )
[9658]	1102	cd ${MAIN_DIR}
[12569]	1103	#
	1104	# syncronisation if target directory/file exist (not done by makenemo)
[14981]	1105	sync_config AGRIF_DEMO ${SETTE_CONFIG} 'cfgs'
	1106	clean_config AGRIF_DEMO ${SETTE_CONFIG} 'cfgs'
[12569]	1107	#
[14981]	1108	# AGRIF_DEMO does not yet support nn_hls=2 => key_loop_fusion can not be used
[15030]	1109	# . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r AGRIF_DEMO -j ${CMPL_CORES} add_key "${ADD_KEYS/key_loop_fusion}" del_key "${DEL_KEYS}"
	1110	. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r AGRIF_DEMO -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[14981]	1111	fi
	1112	if [ ${config} == "AGRIF" ] && [ ${DO_RESTART} == "1" ] ; then
	1113	## Restartability tests
	1114	export TEST_NAME="LONG"
[9483]	1115	cd ${SETTE_DIR}
	1116	. ./prepare_exe_dir.sh
[10755]	1117	set_valid_dir
[10698]	1118	clean_valid_dir
[9483]	1119	JOB_FILE=${EXE_DIR}/run_job.sh
[9776]	1120	NPROC=16
[9483]	1121	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1122	cd ${EXE_DIR}
	1123	set_namelist namelist_cfg cn_exp \"AGRIF_LONG\"
	1124	set_namelist namelist_cfg nn_it000 1
[13559]	1125	set_namelist namelist_cfg nn_itend ${ITEND}
	1126	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10573]	1127	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[15030]	1128	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[14981]	1129	#set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
[9483]	1130	set_namelist 1_namelist_cfg cn_exp \"AGRIF_LONG\"
	1131	set_namelist 1_namelist_cfg nn_it000 1
[13559]	1132	set_namelist 1_namelist_cfg nn_itend ${ITEND}
	1133	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10573]	1134	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1135	set_namelist 2_namelist_cfg cn_exp \"AGRIF_LONG\"
	1136	set_namelist 2_namelist_cfg nn_it000 1
[13559]	1137	set_namelist 2_namelist_cfg nn_itend $(( ${ITEND} * 4 ))
	1138	set_namelist 2_namelist_cfg nn_stock $(( ${ITEND} * 4 / 2 ))
[10573]	1139	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[9776]	1140	set_namelist 3_namelist_cfg cn_exp \"AGRIF_LONG\"
	1141	set_namelist 3_namelist_cfg nn_it000 1
[13559]	1142	set_namelist 3_namelist_cfg nn_itend $(( ${ITEND} * 4 * 3 ))
	1143	set_namelist 3_namelist_cfg nn_stock $(( ${ITEND} * 4 * 3 / 2 ))
[10573]	1144	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9507]	1145
[15030]	1146	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1147	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1148	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1149	set_namelist_opt 1_namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1150	set_namelist_opt 1_namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1151	set_namelist_opt 1_namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1152	set_namelist_opt 2_namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1153	set_namelist_opt 2_namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1154	set_namelist_opt 2_namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1155	set_namelist_opt 3_namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1156	set_namelist_opt 3_namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1157	set_namelist_opt 3_namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1158
[14981]	1159	set_xio_using_server iodef.xml ${USING_MPMD}
[9483]	1160	cd ${SETTE_DIR}
[10755]	1161	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1162
	1163	cd ${SETTE_DIR}
	1164	export TEST_NAME="SHORT"
	1165	. ./prepare_exe_dir.sh
[10755]	1166	set_valid_dir
[10698]	1167	clean_valid_dir
[9483]	1168	cd ${EXE_DIR}
	1169	set_namelist namelist_cfg cn_exp \"AGRIF_SHORT\"
[13559]	1170	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	1171	set_namelist namelist_cfg nn_itend ${ITEND}
	1172	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10573]	1173	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[15030]	1174	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9483]	1175	set_namelist namelist_cfg ln_rstart .true.
	1176	set_namelist namelist_cfg nn_rstctl 2
[15030]	1177	set_namelist namelist_top_cfg ln_rsttr .true.
	1178	set_namelist namelist_top_cfg nn_rsttr 2
[14981]	1179	#set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
[9483]	1180	set_namelist 1_namelist_cfg cn_exp \"AGRIF_SHORT\"
[13559]	1181	set_namelist 1_namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	1182	set_namelist 1_namelist_cfg nn_itend ${ITEND}
	1183	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10573]	1184	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1185	set_namelist 1_namelist_cfg ln_rstart .true.
	1186	set_namelist 1_namelist_cfg nn_rstctl 2
[15030]	1187	set_namelist 1_namelist_top_cfg ln_rsttr .true.
	1188	set_namelist 1_namelist_cfg ln_init_chfrpar .false.
	1189	set_namelist 1_namelist_top_cfg nn_rsttr 2
[9483]	1190	set_namelist 2_namelist_cfg cn_exp \"AGRIF_SHORT\"
[13559]	1191	set_namelist 2_namelist_cfg nn_it000 $(( ${ITEND} * 4 / 2 + 1 ))
	1192	set_namelist 2_namelist_cfg nn_itend $(( ${ITEND} * 4 ))
	1193	set_namelist 2_namelist_cfg nn_stock $(( ${ITEND} * 4 / 2 ))
[10573]	1194	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1195	set_namelist 2_namelist_cfg ln_rstart .true.
	1196	set_namelist 2_namelist_cfg nn_rstctl 2
[15030]	1197	set_namelist 2_namelist_cfg ln_init_chfrpar .false.
	1198	set_namelist 2_namelist_top_cfg ln_rsttr .true.
	1199	set_namelist 2_namelist_top_cfg nn_rsttr 2
[9776]	1200	set_namelist 3_namelist_cfg cn_exp \"AGRIF_SHORT\"
[13559]	1201	set_namelist 3_namelist_cfg nn_it000 $(( ${ITEND} * 4 * 3 / 2 + 1 ))
	1202	set_namelist 3_namelist_cfg nn_itend $(( ${ITEND} * 4 * 3 ))
	1203	set_namelist 3_namelist_cfg nn_stock $(( ${ITEND} * 4 * 3 / 2 ))
[10573]	1204	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9776]	1205	set_namelist 3_namelist_cfg ln_rstart .true.
	1206	set_namelist 3_namelist_cfg nn_rstctl 2
[15030]	1207	set_namelist 3_namelist_cfg ln_init_chfrpar .false.
	1208	set_namelist 3_namelist_top_cfg ln_rsttr .true.
	1209	set_namelist 3_namelist_top_cfg nn_rsttr 2
[13559]	1210	set_namelist namelist_cfg cn_ocerst_in \"AGRIF_LONG_${ITRST}_restart\"
	1211	set_namelist namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_${ITRST}_restart_ice\"
[15030]	1212	set_namelist namelist_top_cfg cn_trcrst_in \"AGRIF_LONG_${ITRST}_restart_trc\"
[13559]	1213	set_namelist 1_namelist_cfg cn_ocerst_in \"AGRIF_LONG_${ITRST_1}_restart\"
	1214	set_namelist 1_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_${ITRST_1}_restart_ice\"
[15030]	1215	set_namelist 1_namelist_top_cfg cn_trcrst_in \"AGRIF_LONG_${ITRST_1}_restart_trc\"
[13559]	1216	set_namelist 2_namelist_cfg cn_ocerst_in \"AGRIF_LONG_${ITRST_2}_restart\"
	1217	set_namelist 2_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_${ITRST_2}_restart_ice\"
[15030]	1218	set_namelist 2_namelist_top_cfg cn_trcrst_in \"AGRIF_LONG_${ITRST_2}_restart_trc\"
[13559]	1219	set_namelist 3_namelist_cfg cn_ocerst_in \"AGRIF_LONG_${ITRST_3}_restart\"
	1220	set_namelist 3_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_${ITRST_3}_restart_ice\"
[15030]	1221	set_namelist 3_namelist_top_cfg cn_trcrst_in \"AGRIF_LONG_${ITRST_3}_restart_trc\"
	1222	#
	1223	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1224	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1225	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1226	set_namelist_opt 1_namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1227	set_namelist_opt 1_namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1228	set_namelist_opt 1_namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1229	set_namelist_opt 2_namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1230	set_namelist_opt 2_namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1231	set_namelist_opt 2_namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1232	set_namelist_opt 3_namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1233	set_namelist_opt 3_namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1234	set_namelist_opt 3_namelist_cfg ln_tile ${USING_TILING} .true. .false.
[9483]	1235
	1236	for (( i=1; i<=$NPROC; i++)) ; do
	1237	L_NPROC=$(( $i - 1 ))
	1238	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	1239	ln -sf ../LONG/AGRIF_LONG_${ITRST}_restart_${L_NPROC}.nc .
	1240	ln -sf ../LONG/AGRIF_LONG_${ITRST}_restart_ice_${L_NPROC}.nc .
[15030]	1241	ln -sf ../LONG/AGRIF_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
[13559]	1242	ln -sf ../LONG/1_AGRIF_LONG_${ITRST_1}_restart_${L_NPROC}.nc .
	1243	ln -sf ../LONG/1_AGRIF_LONG_${ITRST_1}_restart_ice_${L_NPROC}.nc .
[15030]	1244	ln -sf ../LONG/1_AGRIF_LONG_${ITRST_1}_restart_trc_${L_NPROC}.nc .
[13559]	1245	ln -sf ../LONG/2_AGRIF_LONG_${ITRST_2}_restart_${L_NPROC}.nc .
	1246	ln -sf ../LONG/2_AGRIF_LONG_${ITRST_2}_restart_ice_${L_NPROC}.nc .
[15030]	1247	ln -sf ../LONG/2_AGRIF_LONG_${ITRST_2}_restart_trc_${L_NPROC}.nc .
[13559]	1248	ln -sf ../LONG/3_AGRIF_LONG_${ITRST_3}_restart_${L_NPROC}.nc .
	1249	ln -sf ../LONG/3_AGRIF_LONG_${ITRST_3}_restart_ice_${L_NPROC}.nc .
[15030]	1250	ln -sf ../LONG/3_AGRIF_LONG_${ITRST_3}_restart_trc_${L_NPROC}.nc .
[9483]	1251	done
[14981]	1252	set_xio_using_server iodef.xml ${USING_MPMD}
[9483]	1253	cd ${SETTE_DIR}
[10755]	1254	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1255	cd ${SETTE_DIR}
	1256	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1257
[13568]	1258	fi
	1259
	1260	if [ ${config} == "AGRIF" ] && [ ${DO_REPRO} == "1" ] ; then
[9518]	1261	## Reproducibility tests
[11800]	1262	export TEST_NAME="REPRO_2_8"
[9658]	1263	cd ${MAIN_DIR}
[9483]	1264	cd ${SETTE_DIR}
	1265	. ./prepare_exe_dir.sh
[10755]	1266	set_valid_dir
[10698]	1267	clean_valid_dir
[9483]	1268	JOB_FILE=${EXE_DIR}/run_job.sh
[11800]	1269	NPROC=16
[9483]	1270	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1271	cd ${EXE_DIR}
[11800]	1272	set_namelist namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1273	set_namelist namelist_cfg nn_it000 1
[13559]	1274	set_namelist namelist_cfg nn_itend ${ITEND}
[11800]	1275	set_namelist namelist_cfg jpni 2
[9483]	1276	set_namelist namelist_cfg jpnj 8
[10573]	1277	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[15030]	1278	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
	1279	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1280	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1281	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
[14981]	1282	#set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
[11800]	1283	set_namelist 1_namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1284	set_namelist 1_namelist_cfg nn_it000 1
[13559]	1285	set_namelist 1_namelist_cfg nn_itend ${ITEND}
[11800]	1286	set_namelist 1_namelist_cfg jpni 2
[9483]	1287	set_namelist 1_namelist_cfg jpnj 8
[10573]	1288	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[15030]	1289	set_namelist_opt 1_namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1290	set_namelist_opt 1_namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1291	set_namelist_opt 1_namelist_cfg ln_tile ${USING_TILING} .true. .false.
[11800]	1292	set_namelist 2_namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1293	set_namelist 2_namelist_cfg nn_it000 1
[13559]	1294	set_namelist 2_namelist_cfg nn_itend $(( ${ITEND} * 4 ))
[11800]	1295	set_namelist 2_namelist_cfg jpni 2
[9483]	1296	set_namelist 2_namelist_cfg jpnj 8
[10573]	1297	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[15030]	1298	set_namelist_opt 2_namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1299	set_namelist_opt 2_namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1300	set_namelist_opt 2_namelist_cfg ln_tile ${USING_TILING} .true. .false.
[11800]	1301	set_namelist 3_namelist_cfg cn_exp \"AGRIF_28\"
[9776]	1302	set_namelist 3_namelist_cfg nn_it000 1
[13559]	1303	set_namelist 3_namelist_cfg nn_itend $(( ${ITEND} * 4 * 3 ))
[11800]	1304	set_namelist 3_namelist_cfg jpni 2
[9776]	1305	set_namelist 3_namelist_cfg jpnj 8
[10573]	1306	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[15030]	1307	set_namelist_opt 3_namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1308	set_namelist_opt 3_namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1309	set_namelist_opt 3_namelist_cfg ln_tile ${USING_TILING} .true. .false.
[9483]	1310
[14981]	1311	set_xio_using_server iodef.xml ${USING_MPMD}
[9483]	1312	cd ${SETTE_DIR}
[10755]	1313	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1314	cd ${SETTE_DIR}
	1315	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1316
	1317	cd ${SETTE_DIR}
[11800]	1318	export TEST_NAME="REPRO_4_4"
[9483]	1319	. ./prepare_exe_dir.sh
[10755]	1320	set_valid_dir
[10698]	1321	clean_valid_dir
[9483]	1322	JOB_FILE=${EXE_DIR}/run_job.sh
[11800]	1323	NPROC=16
[9483]	1324	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1325	cd ${EXE_DIR}
[11800]	1326	set_namelist namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1327	set_namelist namelist_cfg nn_it000 1
[13559]	1328	set_namelist namelist_cfg nn_itend ${ITEND}
[11800]	1329	set_namelist namelist_cfg jpni 4
[9483]	1330	set_namelist namelist_cfg jpnj 4
[10573]	1331	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[15030]	1332	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
	1333	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1334	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1335	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
[14981]	1336	#set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	1337	set_xio_using_server iodef.xml ${USING_MPMD}
[11800]	1338	set_namelist 1_namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1339	set_namelist 1_namelist_cfg nn_it000 1
[13559]	1340	set_namelist 1_namelist_cfg nn_itend ${ITEND}
[11800]	1341	set_namelist 1_namelist_cfg jpni 4
[9483]	1342	set_namelist 1_namelist_cfg jpnj 4
[10573]	1343	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[15030]	1344	set_namelist_opt 1_namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1345	set_namelist_opt 1_namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1346	set_namelist_opt 1_namelist_cfg ln_tile ${USING_TILING} .true. .false.
[11800]	1347	set_namelist 2_namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1348	set_namelist 2_namelist_cfg nn_it000 1
[13559]	1349	set_namelist 2_namelist_cfg nn_itend $(( ${ITEND} * 4 ))
[11800]	1350	set_namelist 2_namelist_cfg jpni 4
[9483]	1351	set_namelist 2_namelist_cfg jpnj 4
[10573]	1352	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[15030]	1353	set_namelist_opt 2_namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1354	set_namelist_opt 2_namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1355	set_namelist_opt 2_namelist_cfg ln_tile ${USING_TILING} .true. .false.
[12428]	1356	set_namelist 3_namelist_cfg cn_exp \"AGRIF_44\"
[9776]	1357	set_namelist 3_namelist_cfg nn_it000 1
[13559]	1358	set_namelist 3_namelist_cfg nn_itend $(( ${ITEND} * 4 * 3 ))
[11800]	1359	set_namelist 3_namelist_cfg jpni 4
[9776]	1360	set_namelist 3_namelist_cfg jpnj 4
[10573]	1361	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[15030]	1362	set_namelist_opt 3_namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1363	set_namelist_opt 3_namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1364	set_namelist_opt 3_namelist_cfg ln_tile ${USING_TILING} .true. .false.
[9483]	1365
	1366	cd ${SETTE_DIR}
[10755]	1367	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1368	cd ${SETTE_DIR}
	1369	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1370
[13568]	1371	fi
	1372
	1373	if [ ${config} == "AGRIF" ] && [ ${DO_CORRUPT} == "1" ] ; then
[9507]	1374	## test code corruption with AGRIF (phase 1) ==> Compile with key_agrif but run with no zoom
[13559]	1375	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	1376	then
	1377	ITEND=16 # 1d
	1378	else
	1379	ITEND=150 # 5d and 9h
	1380	fi
[9507]	1381	export TEST_NAME="ORCA2"
[9658]	1382	cd ${MAIN_DIR}
[9483]	1383	cd ${SETTE_DIR}
	1384	. ./prepare_exe_dir.sh
[10755]	1385	set_valid_dir
[10698]	1386	clean_valid_dir
[9483]	1387	JOB_FILE=${EXE_DIR}/run_job.sh
	1388	NPROC=32
	1389	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1390	cd ${EXE_DIR}
[9507]	1391	set_namelist namelist_cfg cn_exp \"ORCA2\"
[9483]	1392	set_namelist namelist_cfg nn_it000 1
[13559]	1393	set_namelist namelist_cfg nn_itend ${ITEND}
[10573]	1394	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[15030]	1395	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[14981]	1396	#set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
[15030]	1397	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1398	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1399	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
[9507]	1400
[9483]	1401	# Set the number of fine grids to zero:
	1402	sed -i "1s/.*/0/" ${EXE_DIR}/AGRIF_FixedGrids.in
	1403
[14981]	1404	set_xio_using_server iodef.xml ${USING_MPMD}
[9483]	1405	cd ${SETTE_DIR}
[10755]	1406	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1407	cd ${SETTE_DIR}
	1408	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1409
	1410	fi
	1411
[9525]	1412
[9776]	1413	## test code corruption with AGRIF (phase 2) ==> Compile without key_agrif (to be compared with AGRIF_DEMO_ST/ORCA2)
[13568]	1414	if [ ${config} == "AGRIF" ] && [ ${DO_CORRUPT} == "1" ] ; then
[14981]	1415	SETTE_CONFIG="AGRIF_DEMO_NOAGRIF"${SETTE_STG}
[9507]	1416	export TEST_NAME="ORCA2"
[9658]	1417	cd ${MAIN_DIR}
[12569]	1418	#
	1419	# syncronisation if target directory/file exist (not done by makenemo)
[14981]	1420	sync_config AGRIF_DEMO ${SETTE_CONFIG} 'cfgs'
	1421	clean_config AGRIF_DEMO ${SETTE_CONFIG} 'cfgs'
[12569]	1422	#
[14981]	1423	# AGRIF_DEMO does not yet support nn_hls=2 => key_loop_fusion can not be used
	1424	. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r AGRIF_DEMO -j ${CMPL_CORES} add_key "${ADD_KEYS/key_loop_fusion}" del_key "key_agrif ${DEL_KEYS}"
[9483]	1425	cd ${SETTE_DIR}
	1426	. ./prepare_exe_dir.sh
[10755]	1427	set_valid_dir
[10698]	1428	clean_valid_dir
[9483]	1429	JOB_FILE=${EXE_DIR}/run_job.sh
	1430	NPROC=32
	1431	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1432	cd ${EXE_DIR}
[9507]	1433	set_namelist namelist_cfg cn_exp \"ORCA2\"
[9483]	1434	set_namelist namelist_cfg nn_it000 1
[13559]	1435	set_namelist namelist_cfg nn_itend ${ITEND}
[10573]	1436	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[15030]	1437	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[14981]	1438	#set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
[15030]	1439	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1440	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1441	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
[9483]	1442	#
[14981]	1443	set_xio_using_server iodef.xml ${USING_MPMD}
[9483]	1444	cd ${SETTE_DIR}
[10755]	1445	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1446	cd ${SETTE_DIR}
	1447	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1448
	1449	fi
	1450
[9553]	1451	# -------
[13382]	1452	# WED025
[9553]	1453	# -------
[14981]	1454	if [ ${config} == "WED025" ] ; then
	1455	SETTE_CONFIG="WED025"${SETTE_STG}
[13559]	1456	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	1457	then
	1458	ITEND=12 # 4h
	1459	else
	1460	ITEND=720 # 10 days
	1461	fi
	1462	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[9658]	1463	cd ${MAIN_DIR}
[12569]	1464	#
	1465	# syncronisation if target directory/file exist (not done by makenemo)
[14981]	1466	sync_config WED025 ${SETTE_CONFIG} 'cfgs'
	1467	clean_config WED025 ${SETTE_CONFIG} 'cfgs'
[12569]	1468	#
[14981]	1469	# WED025 uses ln_hpg_isf so remove key_qco if added by default
	1470	. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r WED025 -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
	1471	fi
	1472	if [ ${config} == "WED025" ] && [ ${DO_RESTART} == "1" ] ; then
	1473	## Restartability tests
	1474	export TEST_NAME="LONG"
[9553]	1475	cd ${SETTE_DIR}
	1476	. ./prepare_exe_dir.sh
[10755]	1477	set_valid_dir
[10698]	1478	clean_valid_dir
[9553]	1479	JOB_FILE=${EXE_DIR}/run_job.sh
	1480	NPROC=32
	1481	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1482	cd ${EXE_DIR}
[13382]	1483	set_namelist namelist_cfg cn_exp \"WED025_LONG\"
[9553]	1484	set_namelist namelist_cfg nn_it000 1
[13559]	1485	set_namelist namelist_cfg nn_itend ${ITEND}
	1486	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[13382]	1487	set_namelist namelist_cfg nn_date0 20000115
[9553]	1488	set_namelist namelist_cfg jpni 4
	1489	set_namelist namelist_cfg jpnj 8
[10573]	1490	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9744]	1491	#set_namelist namelist_ice_cfg ln_icediachk .true.
[14981]	1492	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	1493	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1494	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1495	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1496	set_xio_using_server iodef.xml ${USING_MPMD}
[9553]	1497	cd ${SETTE_DIR}
[13382]	1498	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1499
	1500	cd ${SETTE_DIR}
	1501	export TEST_NAME="SHORT"
	1502	. ./prepare_exe_dir.sh
[10755]	1503	set_valid_dir
[10698]	1504	clean_valid_dir
[9553]	1505	cd ${EXE_DIR}
[13382]	1506	set_namelist namelist_cfg cn_exp \"WED025_SHORT\"
[13559]	1507	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	1508	set_namelist namelist_cfg nn_itend ${ITEND}
	1509	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[9553]	1510	set_namelist namelist_cfg ln_rstart .true.
	1511	set_namelist namelist_cfg nn_rstctl 2
	1512	set_namelist namelist_cfg jpni 4
	1513	set_namelist namelist_cfg jpnj 8
[10573]	1514	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13559]	1515	set_namelist namelist_cfg cn_ocerst_in \"WED025_LONG_${ITRST}_restart\"
	1516	set_namelist namelist_ice_cfg cn_icerst_in \"WED025_LONG_${ITRST}_restart_ice\"
[9553]	1517	for (( i=1; i<=$NPROC; i++)) ; do
	1518	L_NPROC=$(( $i - 1 ))
	1519	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	1520	ln -sf ../LONG/WED025_LONG_${ITRST}_restart_${L_NPROC}.nc .
	1521	ln -sf ../LONG/WED025_LONG_${ITRST}_restart_ice_${L_NPROC}.nc .
[9553]	1522	done
[14981]	1523	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	1524	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1525	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1526	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1527	set_xio_using_server iodef.xml ${USING_MPMD}
[9553]	1528	cd ${SETTE_DIR}
[13382]	1529	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1530	cd ${SETTE_DIR}
	1531	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1532
[13568]	1533	fi
	1534
	1535	if [ ${config} == "WED025" ] && [ ${DO_REPRO} == "1" ] ; then
[9553]	1536	## Reproducibility tests
[13382]	1537	export TEST_NAME="REPRO_5_6"
[9658]	1538	cd ${MAIN_DIR}
[9553]	1539	cd ${SETTE_DIR}
	1540	. ./prepare_exe_dir.sh
[10755]	1541	set_valid_dir
[10698]	1542	clean_valid_dir
[9553]	1543	JOB_FILE=${EXE_DIR}/run_job.sh
	1544	NPROC=32
	1545	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1546	cd ${EXE_DIR}
[13382]	1547	set_namelist namelist_cfg cn_exp \"WED025_56\"
[9553]	1548	set_namelist namelist_cfg nn_it000 1
[13559]	1549	set_namelist namelist_cfg nn_itend ${ITEND}
[13382]	1550	set_namelist namelist_cfg nn_date0 20000115
	1551	set_namelist namelist_cfg jpni 6
	1552	set_namelist namelist_cfg jpnj 7
[10573]	1553	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[14981]	1554	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	1555	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1556	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1557	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1558	set_xio_using_server iodef.xml ${USING_MPMD}
[9553]	1559	cd ${SETTE_DIR}
[13382]	1560	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1561	cd ${SETTE_DIR}
	1562	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1563
	1564	cd ${SETTE_DIR}
	1565	export TEST_NAME="REPRO_8_4"
	1566	. ./prepare_exe_dir.sh
[10755]	1567	set_valid_dir
[10698]	1568	clean_valid_dir
[9553]	1569	JOB_FILE=${EXE_DIR}/run_job.sh
	1570	NPROC=32
	1571	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1572	cd ${EXE_DIR}
[13382]	1573	set_namelist namelist_cfg cn_exp \"WED025_84\"
[9553]	1574	set_namelist namelist_cfg nn_it000 1
[13559]	1575	set_namelist namelist_cfg nn_itend ${ITEND}
[13382]	1576	set_namelist namelist_cfg nn_date0 20000115
[9553]	1577	set_namelist namelist_cfg jpni 8
	1578	set_namelist namelist_cfg jpnj 4
[10573]	1579	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[14981]	1580	set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
	1581	set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
	1582	set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
	1583	set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
	1584	set_xio_using_server iodef.xml ${USING_MPMD}
[9553]	1585	cd ${SETTE_DIR}
[13382]	1586	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1587	cd ${SETTE_DIR}
	1588	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1589	fi
	1590
	1591
[3520]	1592	done
[13568]	1593	#
	1594	# Return to SETTE_DIR (last fcm_job.sh will have moved to EXE_DIR)
	1595	cd ${SETTE_DIR}

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