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sette_test-cases.sh in utils/CI/sette – NEMO

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source: utils/CI/sette/sette_test-cases.sh @ 14823

Last change on this file since 14823 was 14823, checked in by francesca, 3 years ago
remove key_mpi3
Property svn:executable set to ``*
File size: 39.3 KB

Rev	Line
[9268]	1	#!/bin/bash
	2	############################################################
	3	# Author : Simona Flavoni for NEMO
	4	# Contact: sflod@locean-ipsl.upmc.fr
	5	#
	6	# sette_test-cases.sh : principal script of SET TEsts for NEMO (SETTE)
	7	# : this script : compiles, run and tests TEST_CASES
	8	#
	9	# : TO DO: test if nitend is equal to end of run.stat
	10	# ----------------------------------------------------------------------
	11	# NEMO/SETTE , NEMO Consortium (2018)
	12	# Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
	13	# ----------------------------------------------------------------------
	14	#
	15	#############################################################
	16	#set -vx
	17	set -o posix
	18	#set -u
	19	#set -e
	20	# ===========
	21	# DESCRIPTION
	22	# ===========
	23	#
	24	# Variables to be checked by user:
	25	#
	26	# COMPILER : name of compiler as defined in NEMOGCM/ARCH directory
	27	# BATCH_COMMAND_PAR : name of the command for submitting parallel batch jobs
	28	# BATCH_COMMAND_SEQ : name of the command for submitting sequential batch jobs
	29	# INTERACT_FLAG : flag to run in interactive mode "yes"
	30	# to run in batch mode "no"
	31	# MPIRUN_FLAG : flag to run in parallel (MPI) "yes"
	32	# to run in sequential mode (NB_PROC = 1) "no"
[14244]	33	# USING_XIOS : flag to control the activation of key_xios
	34	# "yes" to compile using key_xios and link to the external XIOS library
	35	# "no" to compile without key_xios and link to the old IOIPSL library
[9268]	36	# USING_MPMD : flag to control the use of stand-alone IO servers
	37	# requires USING_XIOS="yes"
	38	# "yes" to run in MPMD (detached) mode with stand-alone IO servers
	39	# "no" to run in SPMD (attached) mode without separate IO servers
	40	# NUM_XIOSERVERS : number of stand-alone IO servers to employ
	41	# set to zero if USING_MPMD="no"
[14244]	42	# USING_LOOP_FUSION : flag to control the activation of key_loop_fusion
	43	# "yes" to use the loop fusion adv routines when halo = 2
	44	# "no" to use standard adv routines
[9268]	45	#
	46	# Principal script is sette_test-cases.sh, that calls
	47	#
	48	# makenemo : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe
[9576]	49	# and links to nemo in ${CONFIG_NAME}/EXP00)
[9268]	50	#
	51	# param.cfg : sets and loads following directories:
[13568]	52	# This will have been run by the parent sette.sh and values exported here
[9268]	53	#
	54	# FORCING_DIR : is the directory for forcing files (tarfile)
	55	# INPUT_DIR : is the directory for input files storing
	56	# TMPDIR : is the temporary directory (if needed)
	57	# NEMO_VALIDATION_DIR : is the validation directory
	58	#
	59	# (NOTE: this file is the same for all configrations to be tested with sette_test-cases.sh)
	60	#
	61	# all_functions.sh : loads functions used by sette (note: new functions can be added here)
	62	# set_namelist : function declared in all_functions that sets namelist parameters
	63	# post_test_tidyup : creates validation storage directory and copies required output files
	64	# (run.stat and ocean.output) in it after execution of test.
	65	#
	66	# VALIDATION tree is:
	67	#
	68	# NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
	69	#
	70	# prepare_exe_dir.sh : defines and creates directory where the test is executed
	71	# execution directory takes name of TEST_NAME defined for every test
	72	# in sette_test-cases.sh. (each test in executed in its own directory)
	73	#
[11161]	74	# set_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	75	#
	76	# clean_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	77	# ( not doing it could lead to false positive )
	78	#
[9268]	79	# prepare_job.sh : to generate the script run_job.sh
	80	#
	81	# fcm_job.sh : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
	82	# see sette_test-cases.sh and BATCH_TEMPLATE directory
	83	#
	84	# NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which
	85	# can be found paths to the input tar file)
	86	# NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR}
	87	# directory
	88	# NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists
	89	# remain in ${NEW_CONF}/EXP00
	90	#
	91	# NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of
	92	# executed commands
	93	#
	94	# NOTE: if sette_test-cases.sh is stopped in output.sette there is written the last command
	95	# executed by sette_test-cases.sh
	96	#
	97	# example use: ./sette_test-cases.sh
	98	#########################################################################################
	99	#
[11161]	100	# LOAD param value
	101	SETTE_DIR=$(cd $(dirname "$0"); pwd)
	102	MAIN_DIR=$(dirname $SETTE_DIR)
[9268]	103
[11161]	104	export BATCH_COMMAND_PAR=${BATCH_CMD}
	105	export BATCH_COMMAND_SEQ=${BATCH_CMD}
[9268]	106	export INTERACT_FLAG="no"
	107	export MPIRUN_FLAG="yes"
	108	#
[13784]	109	export ADD_KEYS=""
	110	export DEL_KEYS=""
[9268]	111	if [ ${USING_XIOS} == "yes" ]
	112	then
[14244]	113	export ADD_KEYS="${ADD_KEYS} key_xios"
[13784]	114	else
[14244]	115	export DEL_KEYS="${DEL_KEYS} key_xios"
[9268]	116	fi
	117	#
[11161]	118	if [ ${ADD_NOSIGNEDZERO} == "yes" ]
	119	then
[13784]	120	export ADD_KEYS="${ADD_KEYS} key_nosignedzero"
	121	else
	122	export DEL_KEYS="${DEL_KEYS} key_nosignedzero"
[11161]	123	fi
	124	#
[14244]	125	if [ ${USING_LOOP_FUSION} == "yes" ]
	126	then
	127	export ADD_KEYS="${ADD_KEYS} key_loop_fusion"
	128	fi
	129	#
	130	if [ ${NOT_USING_QCO} == "yes" ]
	131	then
	132	export DEL_KEYS="${DEL_KEYS} key_qco key_linssh"
	133	fi
	134	#
[9268]	135	# Settings which control the use of stand alone servers (only relevant if using xios)
	136	#
	137	export NUM_XIOSERVERS=4
[11161]	138	export JOB_PREFIX=${JOB_PREFIX_MPMD}
[9268]	139	#
	140	if [ ${USING_MPMD} == "no" ]
	141	then
	142	export NUM_XIOSERVERS=0
[11161]	143	export JOB_PREFIX=${JOB_PREFIX_NOMPMD}
[9268]	144	fi
	145	#
	146	#
[11161]	147	if [ ${USING_MPMD} == "yes" ] && [ ${USING_XIOS} == "no" ]
[9268]	148	then
	149	echo "Incompatible choices. MPMD mode requires the XIOS server"
	150	exit
	151	fi
	152
	153	# Directory to run the tests
[9602]	154	CONFIG_DIR0=${MAIN_DIR}/cfgs
[9605]	155	TOOLS_DIR=${MAIN_DIR}/tools
[9268]	156
	157	CMP_NAM=${1:-$COMPILER}
	158	# Copy job_batch_COMPILER file for specific compiler into job_batch_template
	159	cd ${SETTE_DIR}
	160	cp BATCH_TEMPLATE/${JOB_PREFIX}-${COMPILER} job_batch_template \|\| exit
	161	# Description of configuration tested:
[11161]	162	# OVERFLOW : TEST s-coordinates : (tracers) Advection schemes: FCT2, FCT4, ubs
	163	# & (dynamics) advection schemes: flux form (ubs, centered), vector form (een)
	164	# zps-coordinates : (tracers) Advection schemes: FCT2, FCT4, ubs
	165	# & (dynamics) advection schemes: flux form (ubs, centered), vector form (een, and een + Hollingsworth correction)
	166	# LOCK_EXCHANGE :
	167	# VORTEX :
	168	# ICE_AGRIF :
[13382]	169	# ISOMIP+ :
[9744]	170	# WAD
[9268]	171
[13568]	172	for config in ${TEST_CONFIGS[@]}
[9268]	173	do
	174
[9524]	175	# ---------
	176	# OVERFLOW
	177	# ---------
[13568]	178	if [ ${config} == "OVERFLOW" ] && [ ${DO_RESTART} == "1" ] ; then
[9268]	179	## Restartability tests for OVERFLOW
[13559]	180	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	181	then
	182	ITEND=12
	183	else
	184	ITEND=120
	185	fi
	186	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[9268]	187	export TEST_NAME="LONG"
[9708]	188	cd ${MAIN_DIR}
[12569]	189	#
	190	. ${SETTE_DIR}/all_functions.sh
	191	#
	192	clean_config OVERFLOW OVERFLOW_ST 'tests'
	193	#
	194	sync_config OVERFLOW OVERFLOW_ST 'tests'
	195	#
[11497]	196	. ./makenemo -m ${CMP_NAM} -n OVERFLOW_ST -a OVERFLOW -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9268]	197	cd ${SETTE_DIR}
	198	. ./param.cfg
	199	. ./all_functions.sh
	200	. ./prepare_exe_dir.sh
[11161]	201	set_valid_dir
	202	clean_valid_dir
[9268]	203	JOB_FILE=${EXE_DIR}/run_job.sh
	204	NPROC=1
	205	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	206	cd ${EXE_DIR}
	207	set_namelist namelist_cfg cn_exp \"OVF_LONG\"
	208	set_namelist namelist_cfg nn_it000 1
[13559]	209	set_namelist namelist_cfg nn_itend ${ITEND}
	210	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10575]	211	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13790]	212	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9268]	213	if [ ${USING_MPMD} == "yes" ] ; then
	214	set_xio_using_server iodef.xml true
	215	else
	216	set_xio_using_server iodef.xml false
	217	fi
	218	cd ${SETTE_DIR}
[11161]	219	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9268]	220
	221	cd ${SETTE_DIR}
	222	export TEST_NAME="SHORT"
	223	. ./prepare_exe_dir.sh
[11161]	224	set_valid_dir
	225	clean_valid_dir
[9268]	226	cd ${EXE_DIR}
	227	set_namelist namelist_cfg cn_exp \"OVF_SHORT\"
[13559]	228	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	229	set_namelist namelist_cfg nn_itend ${ITEND}
	230	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10575]	231	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9268]	232	set_namelist namelist_cfg ln_rstart .true.
	233	set_namelist namelist_cfg nn_rstctl 2
[13559]	234	set_namelist namelist_cfg cn_ocerst_in \"OVF_LONG_${ITRST}_restart\"
[13790]	235	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9268]	236	if [ ${USING_MPMD} == "yes" ] ; then
	237	set_xio_using_server iodef.xml true
	238	else
	239	set_xio_using_server iodef.xml false
	240	fi
[13559]	241	ln -sf ../LONG/OVF_LONG_${ITRST}_restart.nc .
[9756]	242
[9268]	243	cd ${SETTE_DIR}
[11161]	244	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9268]	245	cd ${SETTE_DIR}
	246	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	247
	248
[13568]	249	fi
	250
	251	if [ ${config} == "OVERFLOW" ] && [ ${DO_PHYOPTS} == "1" ] ; then
[9268]	252	## Test for all advection, vert. coordinates, vector form, flux form: test runability and complete all time steps
	253	## Needed namelist-xxxx for every type of run tested
[13559]	254	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	255	then
	256	ITEND=12
	257	else
	258	ITEND=6120
	259	fi
[9268]	260	cd ${CONFIG_DIR}/${NEW_CONF}/EXP00
	261
	262	for file in $(echo `ls namelist_*_cfg `) ; do
[9963]	263	TEST_NAME=`echo $file \| sed -e "s/namelist_//" \| sed -e "s/_cfg//"`
[9268]	264	TEST_NAME="EXP-${TEST_NAME}"
[9963]	265	if [ ! -d ${CONFIG_DIR}/${NEW_CONF}/${TEST_NAME} ] ; then mkdir ${CONFIG_DIR}/${NEW_CONF}/${TEST_NAME} ; fi
[9268]	266	export TEST_NAME="${TEST_NAME}"
	267	##
	268	cd ${SETTE_DIR}
	269	. ./param.cfg
	270	. ./all_functions.sh
	271	. ./prepare_exe_dir.sh
[11161]	272	set_valid_dir
	273	clean_valid_dir
[9268]	274	JOB_FILE=${EXE_DIR}/run_job.sh
	275	NPROC=1
	276	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	277	cd ${EXE_DIR}
[9963]	278	rm namelist____
	279	cp -pL ${CONFIG_DIR}/${NEW_CONF}/EXP00/$file namelist_cfg
[13559]	280	set_namelist namelist_cfg nn_it000 1
	281	set_namelist namelist_cfg nn_itend ${ITEND}
[13790]	282	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9268]	283	if [ ${USING_MPMD} == "yes" ] ; then
	284	set_xio_using_server iodef.xml true
	285	else
	286	set_xio_using_server iodef.xml false
	287	fi
	288	cd ${SETTE_DIR}
[11161]	289	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9268]	290	cd ${SETTE_DIR}
	291	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	292	##
	293	done
	294	fi
	295
[9524]	296	# --------------
	297	# LOCK_EXCHANGE
	298	# --------------
[13568]	299	if [ ${config} == "LOCK_EXCHANGE" ] && [ ${DO_RESTART} == "1" ] ; then
[9268]	300	## Restartability tests for LOCK_EXCHANGE
[13559]	301	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	302	then
	303	ITEND=12
	304	else
	305	ITEND=120
	306	fi
	307	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[9268]	308	export TEST_NAME="LONG"
[9708]	309	cd ${MAIN_DIR}
[12569]	310	#
	311	# syncronisation if target directory/file exist (not done by makenemo)
	312	. ${SETTE_DIR}/all_functions.sh
	313	#
	314	clean_config LOCK_EXCHANGE LOCK_EXCHANGE_ST 'tests'
	315	#
	316	sync_config LOCK_EXCHANGE LOCK_EXCHANGE_ST 'tests'
	317	#
[11497]	318	. ./makenemo -m ${CMP_NAM} -n LOCK_EXCHANGE_ST -a LOCK_EXCHANGE -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9268]	319	cd ${SETTE_DIR}
	320	. ./param.cfg
	321	. ./all_functions.sh
	322	. ./prepare_exe_dir.sh
[11161]	323	set_valid_dir
	324	clean_valid_dir
[9268]	325	JOB_FILE=${EXE_DIR}/run_job.sh
	326	NPROC=1
	327	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	328	cd ${EXE_DIR}
	329	set_namelist namelist_cfg cn_exp \"LOCK_LONG\"
	330	set_namelist namelist_cfg nn_it000 1
[13559]	331	set_namelist namelist_cfg nn_itend ${ITEND}
	332	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10575]	333	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13790]	334	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9268]	335	if [ ${USING_MPMD} == "yes" ] ; then
	336	set_xio_using_server iodef.xml true
	337	else
	338	set_xio_using_server iodef.xml false
	339	fi
	340	cd ${SETTE_DIR}
[11161]	341	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9268]	342
	343	cd ${SETTE_DIR}
	344	export TEST_NAME="SHORT"
	345	. ./prepare_exe_dir.sh
[11161]	346	set_valid_dir
	347	clean_valid_dir
[9268]	348	cd ${EXE_DIR}
	349	set_namelist namelist_cfg cn_exp \"LOCK_SHORT\"
[13559]	350	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	351	set_namelist namelist_cfg nn_itend ${ITEND}
	352	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10575]	353	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9268]	354	set_namelist namelist_cfg ln_rstart .true.
	355	set_namelist namelist_cfg nn_rstctl 2
[13559]	356	set_namelist namelist_cfg cn_ocerst_in \"LOCK_LONG_${ITRST}_restart\"
[13790]	357	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9268]	358	if [ ${USING_MPMD} == "yes" ] ; then
	359	set_xio_using_server iodef.xml true
	360	else
	361	set_xio_using_server iodef.xml false
	362	fi
[13559]	363	ln -sf ../LONG/LOCK_LONG_${ITRST}_restart.nc .
[9756]	364
[9268]	365	cd ${SETTE_DIR}
[11161]	366	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9268]	367	cd ${SETTE_DIR}
	368	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	369
[13568]	370	fi
	371
	372	if [ ${config} == "LOCK_EXCHANGE" ] && [ ${DO_PHYOPTS} == "1" ] ; then
[9268]	373	## Test for all advection, vector form, flux form: test runability and complete all time steps
	374	## Needed namelist-xxxx for every type of run tested
[13568]	375	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	376	then
	377	ITEND=12
	378	else
	379	ITEND=61200
	380	fi
[9268]	381	cd ${CONFIG_DIR}/${NEW_CONF}/EXP00
	382
	383	for file in $(echo `ls namelist_*_cfg `) ; do
[10242]	384	echo ''
	385	TEST_NAME=`echo $file \| sed -e "s/namelist_//" \| sed -e "s/_cfg//"`
[9268]	386	TEST_NAME="EXP-${TEST_NAME}"
	387	`mkdir ${CONFIG_DIR}/${NEW_CONF}/${TEST_NAME}`
	388	export TEST_NAME="${TEST_NAME}"
[10242]	389	##
[9268]	390	cd ${SETTE_DIR}
	391	. ./param.cfg
	392	. ./all_functions.sh
	393	. ./prepare_exe_dir.sh
[11161]	394	set_valid_dir
	395	clean_valid_dir
[9268]	396	JOB_FILE=${EXE_DIR}/run_job.sh
	397	NPROC=1
	398	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	399	cd ${EXE_DIR}
[10242]	400	rm namelist____
	401	cp -pL ${CONFIG_DIR}/${NEW_CONF}/EXP00/$file namelist_cfg
[13790]	402	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[13568]	403	set_namelist namelist_cfg nn_it000 1
	404	set_namelist namelist_cfg nn_itend ${ITEND}
[9268]	405	if [ ${USING_MPMD} == "yes" ] ; then
	406	set_xio_using_server iodef.xml true
	407	else
	408	set_xio_using_server iodef.xml false
	409	fi
	410	cd ${SETTE_DIR}
[11161]	411	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9268]	412	cd ${SETTE_DIR}
	413	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[10242]	414	##
	415	echo ''
[9268]	416	done
	417	fi
	418
[9524]	419	# ---------
	420	# VORTEX
	421	# ---------
[13568]	422	if [ ${config} == "VORTEX" ] && [ ${DO_RESTART} == "1" ] ; then
[9756]	423	## Restartability tests for VORTEX
[13559]	424	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	425	then
	426	ITEND=12
	427	else
	428	ITEND=240
	429	fi
	430	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
	431	ITRST_1=$( printf "%08d" $(( ${ITEND} * 3 / 2 )) )
[9268]	432	export TEST_NAME="LONG"
[9708]	433	cd ${MAIN_DIR}
[12569]	434	#
	435	# syncronisation if target directory/file exist (not done by makenemo)
	436	. ${SETTE_DIR}/all_functions.sh
	437	#
	438	clean_config VORTEX VORTEX_ST 'tests'
	439	#
	440	sync_config VORTEX VORTEX_ST 'tests'
	441	#
[11497]	442	. ./makenemo -m ${CMP_NAM} -n VORTEX_ST -a VORTEX -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9268]	443	cd ${SETTE_DIR}
	444	. ./param.cfg
	445	. ./all_functions.sh
	446	. ./prepare_exe_dir.sh
[11161]	447	set_valid_dir
	448	clean_valid_dir
[9268]	449	JOB_FILE=${EXE_DIR}/run_job.sh
[9756]	450	NPROC=6
	451	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[9268]	452	cd ${EXE_DIR}
	453	set_namelist namelist_cfg cn_exp \"VORTEX_LONG\"
	454	set_namelist namelist_cfg nn_it000 1
[13559]	455	set_namelist namelist_cfg nn_itend ${ITEND}
	456	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
	457	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[10433]	458
[9756]	459	set_namelist 1_namelist_cfg cn_exp \"VORTEX_LONG\"
	460	set_namelist 1_namelist_cfg nn_it000 1
[13559]	461	set_namelist 1_namelist_cfg nn_itend $(( ${ITEND} * 3 ))
	462	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} * 3 / 2 ))
[10575]	463	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[10433]	464
[13790]	465	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9268]	466	if [ ${USING_MPMD} == "yes" ] ; then
[9756]	467	set_xio_using_server iodef.xml true
[9268]	468	else
[9756]	469	set_xio_using_server iodef.xml false
[9268]	470	fi
	471	cd ${SETTE_DIR}
[11161]	472	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9756]	473
[9268]	474	cd ${SETTE_DIR}
	475	export TEST_NAME="SHORT"
	476	. ./prepare_exe_dir.sh
[11161]	477	set_valid_dir
	478	clean_valid_dir
[9268]	479	cd ${EXE_DIR}
	480	set_namelist namelist_cfg cn_exp \"VORTEX_SHORT\"
[13559]	481	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	482	set_namelist namelist_cfg nn_itend ${ITEND}
	483	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10575]	484	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9268]	485	set_namelist namelist_cfg ln_rstart .true.
	486	set_namelist namelist_cfg nn_rstctl 2
[13559]	487	set_namelist namelist_cfg cn_ocerst_in \"VORTEX_LONG_${ITRST}_restart\"
[9756]	488
	489	set_namelist 1_namelist_cfg cn_exp \"VORTEX_SHORT\"
[13559]	490	set_namelist 1_namelist_cfg nn_it000 $(( ${ITEND} * 3 / 2 + 1 ))
	491	set_namelist 1_namelist_cfg nn_itend $(( ${ITEND} * 3 ))
	492	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} * 3 / 2 ))
[10575]	493	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9756]	494	set_namelist 1_namelist_cfg ln_rstart .true.
	495	set_namelist 1_namelist_cfg nn_rstctl 2
[13559]	496	set_namelist 1_namelist_cfg cn_ocerst_in \"VORTEX_LONG_${ITRST_1}_restart\"
[9756]	497
[13790]	498	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9268]	499	if [ ${USING_MPMD} == "yes" ] ; then
[9756]	500	set_xio_using_server iodef.xml true
	501	else
	502	set_xio_using_server iodef.xml false
	503	fi
	504	if [ $NPROC -eq 1 ] ; then
[13559]	505	ln -sf ../LONG/VORTEX_LONG_${ITRST}_restart.nc .
	506	ln -sf ../LONG/1_VORTEX_LONG_${ITRST_1}_restart.nc .
[9756]	507	else
	508	for (( i=1; i<=$NPROC; i++)) ; do
	509	L_NPROC=$(( $i - 1 ))
	510	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	511	ln -sf ../LONG/VORTEX_LONG_${ITRST}_restart_${L_NPROC}.nc .
	512	ln -sf ../LONG/1_VORTEX_LONG_${ITRST_1}_restart_${L_NPROC}.nc .
[9756]	513	done
	514	fi
	515	cd ${SETTE_DIR}
[11161]	516	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9756]	517	cd ${SETTE_DIR}
	518	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[13568]	519	fi
[9756]	520
[13568]	521	if [ ${config} == "VORTEX" ] && [ ${DO_REPRO} == "1" ] ; then
	522
[9756]	523	## Reproducibility tests for VORTEX
	524	export TEST_NAME="REPRO_2_3"
	525	cd ${MAIN_DIR}
	526	cd ${SETTE_DIR}
	527	. ./param.cfg
	528	. ./all_functions.sh
	529	. ./prepare_exe_dir.sh
[11161]	530	set_valid_dir
	531	clean_valid_dir
[9756]	532	JOB_FILE=${EXE_DIR}/run_job.sh
	533	NPROC=6
	534	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	535	cd ${EXE_DIR}
	536	set_namelist namelist_cfg cn_exp \"VORTEX_23\"
	537	set_namelist namelist_cfg nn_it000 1
[13559]	538	set_namelist namelist_cfg nn_itend ${ITEND}
	539	set_namelist namelist_cfg nn_stock ${ITEND}
[9756]	540	set_namelist namelist_cfg jpni 2
	541	set_namelist namelist_cfg jpnj 3
[10575]	542	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[10427]	543
[9756]	544	set_namelist 1_namelist_cfg cn_exp \"VORTEX_23\"
	545	set_namelist 1_namelist_cfg nn_it000 1
[13559]	546	set_namelist 1_namelist_cfg nn_itend $(( ${ITEND} * 3 ))
	547	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} * 3 ))
[9756]	548	set_namelist 1_namelist_cfg jpni 2
	549	set_namelist 1_namelist_cfg jpnj 3
[10575]	550	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9756]	551
[13790]	552	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9756]	553	if [ ${USING_MPMD} == "yes" ] ; then
[9268]	554	set_xio_using_server iodef.xml true
	555	else
	556	set_xio_using_server iodef.xml false
	557	fi
[9756]	558	cd ${SETTE_DIR}
[11161]	559	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9756]	560	cd ${SETTE_DIR}
	561	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	562
	563	cd ${SETTE_DIR}
	564	export TEST_NAME="REPRO_3_2"
	565	. ./prepare_exe_dir.sh
[11161]	566	set_valid_dir
	567	clean_valid_dir
[9756]	568	JOB_FILE=${EXE_DIR}/run_job.sh
	569	NPROC=6
	570	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	571	cd ${EXE_DIR}
	572
	573	set_namelist namelist_cfg cn_exp \"VORTEX_32\"
	574	set_namelist namelist_cfg nn_it000 1
[13559]	575	set_namelist namelist_cfg nn_itend ${ITEND}
	576	set_namelist namelist_cfg nn_stock ${ITEND}
[9756]	577	set_namelist namelist_cfg jpni 3
	578	set_namelist namelist_cfg jpnj 2
[10575]	579	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[10427]	580
[9756]	581	set_namelist 1_namelist_cfg cn_exp \"VORTEX_32\"
	582	set_namelist 1_namelist_cfg nn_it000 1
[13559]	583	set_namelist 1_namelist_cfg nn_itend $(( ${ITEND} * 3 ))
	584	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} * 3 ))
[9756]	585	set_namelist 1_namelist_cfg jpni 3
	586	set_namelist 1_namelist_cfg jpnj 2
[10575]	587	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[10427]	588
[13790]	589	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9268]	590	if [ ${USING_MPMD} == "yes" ] ; then
	591	set_xio_using_server iodef.xml true
	592	else
	593	set_xio_using_server iodef.xml false
	594	fi
	595	cd ${SETTE_DIR}
[11161]	596	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9268]	597	cd ${SETTE_DIR}
	598	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	599
	600	fi
	601
[9458]	602
[9524]	603	# ---------
[10517]	604	# ICE_AGRIF
[9524]	605	# ---------
[13568]	606	if [ ${config} == "ICE_AGRIF" ] && [ ${DO_RESTART} == "1" ] ; then
[10517]	607	## Restartability tests for ICE_AGRIF
[13559]	608	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	609	then
	610	ITEND=10
	611	else
	612	ITEND=200
	613	fi
	614	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
	615	ITRST_1=$( printf "%08d" $(( ${ITEND} * 3 / 2 )) )
[9458]	616	export TEST_NAME="LONG"
[9708]	617	cd ${MAIN_DIR}
[12569]	618	#
	619	# syncronisation if target directory/file exist (not done by makenemo)
	620	. ${SETTE_DIR}/all_functions.sh
	621	#
	622	clean_config ICE_AGRIF ICE_AGRIF_ST 'tests'
	623	#
	624	sync_config ICE_AGRIF ICE_AGRIF_ST 'tests'
	625	#
[11497]	626	. ./makenemo -m ${CMP_NAM} -n ICE_AGRIF_ST -a ICE_AGRIF -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9458]	627	cd ${SETTE_DIR}
	628	. ./param.cfg
	629	. ./all_functions.sh
	630	. ./prepare_exe_dir.sh
[11161]	631	set_valid_dir
	632	clean_valid_dir
[9458]	633	JOB_FILE=${EXE_DIR}/run_job.sh
[9756]	634	NPROC=6
[9458]	635	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	636	cd ${EXE_DIR}
[10517]	637	set_namelist namelist_cfg cn_exp \"ICE_AGRIF_LONG\"
[9458]	638	set_namelist namelist_cfg nn_it000 1
[13559]	639	set_namelist namelist_cfg nn_itend ${ITEND}
	640	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10575]	641	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9458]	642
[10517]	643	set_namelist 1_namelist_cfg cn_exp \"ICE_AGRIF_LONG\"
[9458]	644	set_namelist 1_namelist_cfg nn_it000 1
[13559]	645	set_namelist 1_namelist_cfg nn_itend $(( ${ITEND} * 3 ))
	646	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} * 3 / 2 ))
[10575]	647	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9458]	648
[13790]	649	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9458]	650	if [ ${USING_MPMD} == "yes" ] ; then
	651	set_xio_using_server iodef.xml true
	652	else
	653	set_xio_using_server iodef.xml false
	654	fi
	655	cd ${SETTE_DIR}
[11161]	656	. ./prepare_job.sh input_ICE_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9458]	657
	658	cd ${SETTE_DIR}
	659	export TEST_NAME="SHORT"
	660	. ./prepare_exe_dir.sh
[11161]	661	set_valid_dir
	662	clean_valid_dir
[9458]	663	cd ${EXE_DIR}
[10517]	664	set_namelist namelist_cfg cn_exp \"ICE_AGRIF_SHORT\"
[13559]	665	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	666	set_namelist namelist_cfg nn_itend ${ITEND}
	667	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[10575]	668	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9458]	669	set_namelist namelist_cfg ln_rstart .true.
	670	set_namelist namelist_cfg nn_rstctl 2
[13559]	671	set_namelist namelist_cfg cn_ocerst_in \"ICE_AGRIF_LONG_${ITRST}_restart\"
	672	set_namelist namelist_ice_cfg cn_icerst_in \"ICE_AGRIF_LONG_${ITRST}_restart_ice\"
[9458]	673
[10517]	674	set_namelist 1_namelist_cfg cn_exp \"ICE_AGRIF_SHORT\"
[13559]	675	set_namelist 1_namelist_cfg nn_it000 $(( ${ITEND} * 3 / 2 + 1 ))
	676	set_namelist 1_namelist_cfg nn_itend $(( ${ITEND} * 3 ))
	677	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} * 3 / 2 ))
[10575]	678	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9458]	679	set_namelist 1_namelist_cfg ln_rstart .true.
	680	set_namelist 1_namelist_cfg nn_rstctl 2
[13559]	681	set_namelist 1_namelist_cfg cn_ocerst_in \"ICE_AGRIF_LONG_${ITRST_1}_restart\"
	682	set_namelist 1_namelist_ice_cfg cn_icerst_in \"ICE_AGRIF_LONG_${ITRST_1}_restart_ice\"
[9458]	683
	684
[13790]	685	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9458]	686	if [ ${USING_MPMD} == "yes" ] ; then
	687	set_xio_using_server iodef.xml true
	688	else
	689	set_xio_using_server iodef.xml false
	690	fi
	691	if [ $NPROC -eq 1 ] ; then
[13559]	692	ln -sf ../LONG/ICE_AGRIF_LONG_${ITRST}_restart.nc .
	693	ln -sf ../LONG/ICE_AGRIF_LONG_${ITRST}_restart_ice.nc .
	694	ln -sf ../LONG/1_ICE_AGRIF_LONG_${ITRST_1}_restart.nc .
	695	ln -sf ../LONG/1_ICE_AGRIF_LONG_${ITRST_1}_restart_ice.nc .
[9458]	696	else
	697	for (( i=1; i<=$NPROC; i++)) ; do
	698	L_NPROC=$(( $i - 1 ))
	699	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	700	ln -sf ../LONG/ICE_AGRIF_LONG_${ITRST}_restart_${L_NPROC}.nc .
	701	ln -sf ../LONG/ICE_AGRIF_LONG_${ITRST}_restart_ice_${L_NPROC}.nc .
	702	ln -sf ../LONG/1_ICE_AGRIF_LONG_${ITRST_1}_restart_${L_NPROC}.nc .
	703	ln -sf ../LONG/1_ICE_AGRIF_LONG_${ITRST_1}_restart_ice_${L_NPROC}.nc .
[9458]	704	done
	705	fi
[9756]	706
	707	cd ${SETTE_DIR}
[11161]	708	. ./prepare_job.sh input_ICE_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9756]	709	cd ${SETTE_DIR}
	710	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	711
[13568]	712	fi
[9756]	713
[13568]	714	if [ ${config} == "ICE_AGRIF" ] && [ ${DO_REPRO} == "1" ] ; then
	715
[10517]	716	## Reproducibility tests for ICE_AGRIF
[9756]	717	export TEST_NAME="REPRO_2_3"
	718	cd ${MAIN_DIR}
	719	cd ${SETTE_DIR}
	720	. ./param.cfg
	721	. ./all_functions.sh
	722	. ./prepare_exe_dir.sh
[11161]	723	set_valid_dir
	724	clean_valid_dir
[9756]	725	JOB_FILE=${EXE_DIR}/run_job.sh
	726	NPROC=6
	727	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	728	cd ${EXE_DIR}
[10517]	729	set_namelist namelist_cfg cn_exp \"ICE_AGRIF_23\"
[9756]	730	set_namelist namelist_cfg nn_it000 1
[13559]	731	set_namelist namelist_cfg nn_itend ${ITEND}
	732	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[9756]	733	set_namelist namelist_cfg jpni 2
	734	set_namelist namelist_cfg jpnj 3
[10575]	735	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9756]	736
[10517]	737	set_namelist 1_namelist_cfg cn_exp \"ICE_AGRIF_23\"
[9756]	738	set_namelist 1_namelist_cfg nn_it000 1
[13559]	739	set_namelist 1_namelist_cfg nn_itend $(( ${ITEND} * 3 ))
	740	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} * 3 / 2 ))
[9756]	741	set_namelist 1_namelist_cfg jpni 2
	742	set_namelist 1_namelist_cfg jpnj 3
[10575]	743	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9756]	744
[13790]	745	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9458]	746	if [ ${USING_MPMD} == "yes" ] ; then
[9756]	747	set_xio_using_server iodef.xml true
[9458]	748	else
[9756]	749	set_xio_using_server iodef.xml false
[9458]	750	fi
[9756]	751	cd ${SETTE_DIR}
[11161]	752	. ./prepare_job.sh input_ICE_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9756]	753	cd ${SETTE_DIR}
	754	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	755
	756	cd ${SETTE_DIR}
	757	export TEST_NAME="REPRO_3_2"
	758	. ./prepare_exe_dir.sh
[11161]	759	set_valid_dir
	760	clean_valid_dir
[9756]	761	JOB_FILE=${EXE_DIR}/run_job.sh
	762	NPROC=6
	763	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	764	cd ${EXE_DIR}
	765
[10517]	766	set_namelist namelist_cfg cn_exp \"ICE_AGRIF_32\"
[9756]	767	set_namelist namelist_cfg nn_it000 1
[13559]	768	set_namelist namelist_cfg nn_itend ${ITEND}
	769	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[9756]	770	set_namelist namelist_cfg jpni 3
	771	set_namelist namelist_cfg jpnj 2
[10575]	772	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9756]	773
[10517]	774	set_namelist 1_namelist_cfg cn_exp \"ICE_AGRIF_32\"
[9756]	775	set_namelist 1_namelist_cfg nn_it000 1
[13559]	776	set_namelist 1_namelist_cfg nn_itend $(( ${ITEND} * 3 ))
	777	set_namelist 1_namelist_cfg nn_stock $(( ${ITEND} * 3 / 2 ))
[9756]	778	set_namelist 1_namelist_cfg jpni 3
	779	set_namelist 1_namelist_cfg jpnj 2
[10575]	780	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9756]	781
[13790]	782	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9458]	783	if [ ${USING_MPMD} == "yes" ] ; then
[9756]	784	set_xio_using_server iodef.xml true
[9458]	785	else
[9756]	786	set_xio_using_server iodef.xml false
[9458]	787	fi
	788	cd ${SETTE_DIR}
[11161]	789	. ./prepare_job.sh input_ICE_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9458]	790	cd ${SETTE_DIR}
	791	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[9756]	792
[9458]	793	fi
	794
[9518]	795	# ------
[13382]	796	# ISOMIP+
[9518]	797	# ------
[13568]	798	if [ ${config} == "ISOMIP+" ] && [ ${DO_RESTART} == "1" ] ; then
[9518]	799	## Restartability tests
[13559]	800	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	801	then
	802	ITEND=12
	803	else
	804	ITEND=1200
	805	fi
	806	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
[9518]	807	export TEST_NAME="LONG"
[9708]	808	cd ${MAIN_DIR}
[12569]	809	#
	810	# syncronisation if target directory/file exist (not done by makenemo)
	811	. ${SETTE_DIR}/all_functions.sh
	812	#
[13382]	813	clean_config ISOMIP+ ISOMIP+_ST 'tests'
[12569]	814	#
[13382]	815	sync_config ISOMIP+ ISOMIP+_ST 'tests'
[12569]	816	#
[13382]	817	. ./makenemo -m ${CMP_NAM} -n ISOMIP+_ST -a ISOMIP+ -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9518]	818	cd ${SETTE_DIR}
	819	. ./param.cfg
	820	. ./all_functions.sh
	821	. ./prepare_exe_dir.sh
[11161]	822	set_valid_dir
	823	clean_valid_dir
[9518]	824	JOB_FILE=${EXE_DIR}/run_job.sh
[13382]	825	NPROC=27
[9518]	826	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	827	cd ${EXE_DIR}
[13382]	828	set_namelist namelist_cfg cn_exp \"ISOMIP+_LONG\"
[9518]	829	set_namelist namelist_cfg nn_it000 1
[13559]	830	set_namelist namelist_cfg nn_itend ${ITEND}
	831	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[13382]	832	set_namelist namelist_cfg jpni 9
[9518]	833	set_namelist namelist_cfg jpnj 3
[10575]	834	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13790]	835	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9518]	836	if [ ${USING_MPMD} == "yes" ] ; then
	837	set_xio_using_server iodef.xml true
	838	else
	839	set_xio_using_server iodef.xml false
	840	fi
	841	cd ${SETTE_DIR}
[13382]	842	. ./prepare_job.sh input_ISOMIP+.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9518]	843
	844	cd ${SETTE_DIR}
	845	export TEST_NAME="SHORT"
	846	. ./prepare_exe_dir.sh
[11161]	847	set_valid_dir
	848	clean_valid_dir
[9518]	849	cd ${EXE_DIR}
[13382]	850	set_namelist namelist_cfg cn_exp \"ISOMIP+_SHORT\"
[13559]	851	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	852	set_namelist namelist_cfg nn_itend ${ITEND}
	853	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
[9518]	854	set_namelist namelist_cfg ln_rstart .true.
	855	set_namelist namelist_cfg nn_rstctl 2
[13382]	856	set_namelist namelist_cfg jpni 9
[9518]	857	set_namelist namelist_cfg jpnj 3
[10575]	858	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13559]	859	set_namelist namelist_cfg cn_ocerst_in \"ISOMIP+_LONG_${ITRST}_restart\"
[13790]	860	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9518]	861	if [ ${USING_MPMD} == "yes" ] ; then
	862	set_xio_using_server iodef.xml true
	863	else
	864	set_xio_using_server iodef.xml false
	865	fi
	866	for (( i=1; i<=$NPROC; i++)) ; do
	867	L_NPROC=$(( $i - 1 ))
	868	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13559]	869	ln -sf ../LONG/ISOMIP+_LONG_${ITRST}_restart_${L_NPROC}.nc .
[9518]	870	done
[9756]	871
[9518]	872	cd ${SETTE_DIR}
[13382]	873	. ./prepare_job.sh input_ISOMIP+.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9518]	874	cd ${SETTE_DIR}
	875	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	876
[13568]	877	fi
	878
	879	if [ ${config} == "ISOMIP+" ] && [ ${DO_REPRO} == "1" ] ; then
[9518]	880	## Reproducibility tests
[13559]	881	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	882	then
	883	ITEND=12
	884	else
	885	ITEND=600
	886	fi
[13382]	887	export TEST_NAME="REPRO_9_3"
[9708]	888	cd ${MAIN_DIR}
[9518]	889	cd ${SETTE_DIR}
	890	. ./param.cfg
	891	. ./all_functions.sh
	892	. ./prepare_exe_dir.sh
[11161]	893	set_valid_dir
	894	clean_valid_dir
[9518]	895	JOB_FILE=${EXE_DIR}/run_job.sh
[13382]	896	NPROC=27
[9518]	897	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	898	cd ${EXE_DIR}
[13382]	899	set_namelist namelist_cfg cn_exp \"ISOMIP+_93\"
[9518]	900	set_namelist namelist_cfg nn_it000 1
[13559]	901	set_namelist namelist_cfg nn_itend ${ITEND}
[13382]	902	set_namelist namelist_cfg jpni 9
[9518]	903	set_namelist namelist_cfg jpnj 3
[10575]	904	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13790]	905	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9518]	906	if [ ${USING_MPMD} == "yes" ] ; then
	907	set_xio_using_server iodef.xml true
	908	else
	909	set_xio_using_server iodef.xml false
	910	fi
	911	cd ${SETTE_DIR}
[13382]	912	. ./prepare_job.sh input_ISOMIP+.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9518]	913	cd ${SETTE_DIR}
	914	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	915
	916	cd ${SETTE_DIR}
	917	export TEST_NAME="REPRO_8_4"
	918	. ./prepare_exe_dir.sh
[11161]	919	set_valid_dir
	920	clean_valid_dir
[9518]	921	JOB_FILE=${EXE_DIR}/run_job.sh
	922	NPROC=32
	923	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	924	cd ${EXE_DIR}
[13382]	925	set_namelist namelist_cfg cn_exp \"ISOMIP+_84\"
[9518]	926	set_namelist namelist_cfg nn_it000 1
[13559]	927	set_namelist namelist_cfg nn_itend ${ITEND}
[9518]	928	set_namelist namelist_cfg jpni 8
	929	set_namelist namelist_cfg jpnj 4
[10575]	930	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13790]	931	if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
[9518]	932	if [ ${USING_MPMD} == "yes" ] ; then
	933	set_xio_using_server iodef.xml true
	934	else
	935	set_xio_using_server iodef.xml false
	936	fi
	937	cd ${SETTE_DIR}
[13382]	938	. ./prepare_job.sh input_ISOMIP+.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9518]	939	cd ${SETTE_DIR}
	940	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	941
	942	fi
	943
[14244]	944
	945	# ---------
	946	# SWG
	947	# ---------
	948	if [ ${config} == "SWG" ] && [ ${DO_RESTART} == "1" ] && [ ${NOT_USING_QCO} == "no" ] ; then
	949	## Restartability tests for SWG
	950	if [ $( echo ${CMP_NAM} \| grep -ic debug ) -eq 1 ]
	951	then
	952	ITEND=12
	953	else
	954	ITEND=1728
	955	fi
	956	ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
	957	export TEST_NAME="LONG"
	958	cd ${MAIN_DIR}
	959	#
	960	# syncronisation if target directory/file exist (not done by makenemo)
	961	. ${SETTE_DIR}/all_functions.sh
	962	#
	963	clean_config SWG SWG_ST 'tests'
	964	#
	965	sync_config SWG SWG_ST 'tests'
	966	#
	967	. ./makenemo -m ${CMP_NAM} -n SWG_ST -a SWG -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
	968	cd ${SETTE_DIR}
	969	. ./param.cfg
	970	. ./all_functions.sh
	971	. ./prepare_exe_dir.sh
	972	set_valid_dir
	973	clean_valid_dir
	974	JOB_FILE=${EXE_DIR}/run_job.sh
	975	NPROC=1
	976	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	977	cd ${EXE_DIR}
	978	set_namelist namelist_cfg cn_exp \"SWG_LONG\"
	979	set_namelist namelist_cfg nn_it000 1
	980	set_namelist namelist_cfg nn_itend ${ITEND}
	981	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
	982	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	983
	984	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
	985	if [ ${USING_MPMD} == "yes" ] ; then
	986	set_xio_using_server iodef.xml true
	987	else
	988	set_xio_using_server iodef.xml false
	989	fi
	990	cd ${SETTE_DIR}
	991	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
	992
	993	cd ${SETTE_DIR}
	994	export TEST_NAME="SHORT"
	995	. ./prepare_exe_dir.sh
	996	set_valid_dir
	997	clean_valid_dir
	998	cd ${EXE_DIR}
	999	set_namelist namelist_cfg cn_exp \"SWG_SHORT\"
	1000	set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
	1001	set_namelist namelist_cfg nn_itend ${ITEND}
	1002	set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
	1003	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	1004	set_namelist namelist_cfg ln_rstart .true.
	1005	set_namelist namelist_cfg nn_rstctl 2
	1006	set_namelist namelist_cfg cn_ocerst_in \"SWG_LONG_${ITRST}_restart\"
	1007
	1008	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
	1009	if [ ${USING_MPMD} == "yes" ] ; then
	1010	set_xio_using_server iodef.xml true
	1011	else
	1012	set_xio_using_server iodef.xml false
	1013	fi
	1014	if [ $NPROC -eq 1 ] ; then
	1015	ln -sf ../LONG/SWG_LONG_${ITRST}_restart.nc .
	1016	else
	1017	for (( i=1; i<=$NPROC; i++)) ; do
	1018	L_NPROC=$(( $i - 1 ))
	1019	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	1020	ln -sf ../LONG/SWG_LONG_${ITRST}_restart_${L_NPROC}.nc .
	1021	done
	1022	fi
	1023	cd ${SETTE_DIR}
	1024	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
	1025	cd ${SETTE_DIR}
	1026	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1027	fi
	1028
	1029	if [ ${config} == "SWG" ] && [ ${DO_REPRO} == "1" ] && [ ${NOT_USING_QCO} == "no" ] ; then
	1030
	1031	## Reproducibility tests for SWG
	1032	export TEST_NAME="REPRO_2_3"
	1033	cd ${MAIN_DIR}
	1034	cd ${SETTE_DIR}
	1035	. ./param.cfg
	1036	. ./all_functions.sh
	1037	. ./prepare_exe_dir.sh
	1038	set_valid_dir
	1039	clean_valid_dir
	1040	JOB_FILE=${EXE_DIR}/run_job.sh
	1041	NPROC=6
	1042	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1043	cd ${EXE_DIR}
	1044	set_namelist namelist_cfg cn_exp \"SWG_23\"
	1045	set_namelist namelist_cfg nn_it000 1
	1046	set_namelist namelist_cfg nn_itend ${ITEND}
	1047	set_namelist namelist_cfg nn_stock ${ITEND}
	1048	set_namelist namelist_cfg jpni 2
	1049	set_namelist namelist_cfg jpnj 3
	1050	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	1051	set_namelist namelist_cfg sn_cfctl%l_prtctl .true.
	1052
	1053
	1054	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
	1055	if [ ${USING_MPMD} == "yes" ] ; then
	1056	set_xio_using_server iodef.xml true
	1057	else
	1058	set_xio_using_server iodef.xml false
	1059	fi
	1060	cd ${SETTE_DIR}
	1061	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
	1062	cd ${SETTE_DIR}
	1063	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1064
	1065	cd ${SETTE_DIR}
	1066	export TEST_NAME="REPRO_3_2"
	1067	. ./prepare_exe_dir.sh
	1068	set_valid_dir
	1069	clean_valid_dir
	1070	JOB_FILE=${EXE_DIR}/run_job.sh
	1071	NPROC=6
	1072	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1073	cd ${EXE_DIR}
	1074
	1075	set_namelist namelist_cfg cn_exp \"SWG_32\"
	1076	set_namelist namelist_cfg nn_it000 1
	1077	set_namelist namelist_cfg nn_itend ${ITEND}
	1078	set_namelist namelist_cfg nn_stock ${ITEND}
	1079	set_namelist namelist_cfg jpni 3
	1080	set_namelist namelist_cfg jpnj 2
	1081	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	1082	set_namelist namelist_cfg sn_cfctl%l_prtctl .true.
	1083
	1084	#if [ ${SETTE_TIMING} == "yes" ] ; then set_namelist namelist_cfg ln_timing .true. ; fi
	1085	if [ ${USING_MPMD} == "yes" ] ; then
	1086	set_xio_using_server iodef.xml true
	1087	else
	1088	set_xio_using_server iodef.xml false
	1089	fi
	1090	cd ${SETTE_DIR}
	1091	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
	1092	cd ${SETTE_DIR}
	1093	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1094
	1095	fi
	1096
	1097
	1098
[9458]	1099	#----
[9268]	1100	done
[13568]	1101	#
	1102	# Return to SETTE_DIR (last fcm_job.sh will have moved to EXE_DIR)
	1103	cd ${SETTE_DIR}

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