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sette_reference-configurations.sh in utils/CI/sette_ticket2304 – NEMO

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source: utils/CI/sette_ticket2304/sette_reference-configurations.sh @ 12568

Last change on this file since 12568 was 12568, checked in by mathiot, 4 years ago
ticket2304: synchronise branch with lates revision of sette
Property svn:executable set to ``*
File size: 58.3 KB

Rev	Line
[3520]	1	#!/bin/bash
[3708]	2	############################################################
[3520]	3	# Author : Simona Flavoni for NEMO
[4245]	4	# Contact: sflod@locean-ipsl.upmc.fr
	5	# 2013 : A.C. Coward added options for testing with XIOS in dettached mode
[3520]	6	#
	7	# sette.sh : principal script of SET TEsts for NEMO (SETTE)
	8	# ----------------------------------------------------------------------
	9	# NEMO/SETTE , NEMO Consortium (2010)
	10	# Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
	11	# ----------------------------------------------------------------------
	12	#
	13	#############################################################
[7744]	14	#set -vx
[3520]	15	set -o posix
	16	#set -u
	17	#set -e
[4245]	18	# ===========
[3520]	19	# DESCRIPTION
	20	# ===========
	21	#
	22	# Variables to be checked by user:
	23	#
[4245]	24	# COMPILER : name of compiler as defined in NEMOGCM/ARCH directory
	25	# BATCH_COMMAND_PAR : name of the command for submitting parallel batch jobs
	26	# BATCH_COMMAND_SEQ : name of the command for submitting sequential batch jobs
	27	# INTERACT_FLAG : flag to run in interactive mode "yes"
	28	# to run in batch mode "no"
	29	# MPIRUN_FLAG : flag to run in parallel (MPI) "yes"
	30	# to run in sequential mode (NB_PROC = 1) "no"
	31	# USING_XIOS : flag to control the activation of key_iomput
	32	# "yes" to compile using key_iomput and link to the external XIOS library
	33	# "no" to compile without key_iomput and link to the old IOIPSL library
	34	# USING_MPMD : flag to control the use of stand-alone IO servers
	35	# requires USING_XIOS="yes"
	36	# "yes" to run in MPMD (detached) mode with stand-alone IO servers
	37	# "no" to run in SPMD (attached) mode without separate IO servers
	38	# NUM_XIOSERVERS : number of stand-alone IO servers to employ
	39	# set to zero if USING_MPMD="no"
[3520]	40	#
	41	# Principal script is sette.sh, that calls
	42	#
[4245]	43	# makenemo : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe
[9576]	44	# and links to nemo in ${CONFIG_NAME}/EXP00)
[3520]	45	#
	46	# param.cfg : sets and loads following directories:
	47	#
[4245]	48	# FORCING_DIR : is the directory for forcing files (tarfile)
	49	# INPUT_DIR : is the directory for input files storing
	50	# TMPDIR : is the temporary directory (if needed)
[3520]	51	# NEMO_VALIDATION_DIR : is the validation directory
	52	#
	53	# (NOTE: this file is the same for all configrations to be tested with sette)
	54	#
[4245]	55	# all_functions.sh : loads functions used by sette (note: new functions can be added here)
	56	# set_namelist : function declared in all_functions that sets namelist parameters
	57	# post_test_tidyup : creates validation storage directory and copies required output files
[9019]	58	# (run.stat and ocean.output) in it after execution of test.
[3520]	59	#
[4245]	60	# VALIDATION tree is:
[3520]	61	#
	62	# NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
	63	#
	64	# prepare_exe_dir.sh : defines and creates directory where the test is executed
[4245]	65	# execution directory takes name of TEST_NAME defined for every test
	66	# in sette.sh. (each test in executed in its own directory)
[3520]	67	#
[10755]	68	# set_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	69	#
[10698]	70	# clean_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	71	# ( not doing it could lead to false positive )
	72	#
[4245]	73	# prepare_job.sh : to generate the script run_job.sh
[3520]	74	#
[4245]	75	# fcm_job.sh : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
	76	# see sette.sh and BATCH_TEMPLATE directory
[3520]	77	#
[4245]	78	# NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which
	79	# can be found paths to the input tar file)
	80	# NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR}
	81	# directory
	82	# NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists
	83	# remain in ${NEW_CONF}/EXP00
[3520]	84	#
[4245]	85	# NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of
	86	# executed commands
[3520]	87	#
[4245]	88	# NOTE: if sette.sh is stopped in output.sette there is written the last command
	89	# executed by sette.sh
[3520]	90	#
[4245]	91	# example use: ./sette.sh
	92	#########################################################################################
[3520]	93	#
[10687]	94	# LOAD param value
[10717]	95	SETTE_DIR=$(cd $(dirname "$0"); pwd)
	96	MAIN_DIR=$(dirname $SETTE_DIR)
[10687]	97	. ./param.cfg
[7743]	98
[10687]	99	export BATCH_COMMAND_PAR=${BATCH_CMD}
	100	export BATCH_COMMAND_SEQ=${BATCH_CMD}
[4990]	101	export INTERACT_FLAG="no"
[4245]	102	export MPIRUN_FLAG="yes"
[9941]	103	export USING_ICEBERGS="yes"
[3520]	104	#
[4245]	105	export DEL_KEYS="key_iomput"
	106	if [ ${USING_XIOS} == "yes" ]
	107	then
	108	export DEL_KEYS=""
	109	fi
[3520]	110	#
[10687]	111	export ADD_KEYS=""
	112	if [ ${ADD_NOSIGNEDZERO} == "yes" ]
	113	then
	114	export ADD_KEYS="key_nosignedzero"
	115	fi
	116	#
[4245]	117	# Settings which control the use of stand alone servers (only relevant if using xios)
[3520]	118	#
[10632]	119	export NUM_XIOSERVERS=4
[11140]	120	export JOB_PREFIX=${JOB_PREFIX_MPMD}
[3520]	121	#
[4245]	122	if [ ${USING_MPMD} == "no" ]
	123	then
	124	export NUM_XIOSERVERS=0
[11140]	125	export JOB_PREFIX=${JOB_PREFIX_NOMPMD}
[4245]	126	fi
[3520]	127	#
	128	#
[10573]	129	if [ ${USING_MPMD} == "yes" ] && [ ${USING_XIOS} == "no" ]
[4245]	130	then
	131	echo "Incompatible choices. MPMD mode requires the XIOS server"
	132	exit
	133	fi
[3520]	134
	135	# Directory to run the tests
[9602]	136	CONFIG_DIR0=${MAIN_DIR}/cfgs
	137	TOOLS_DIR=${MAIN_DIR}/tools
[3520]	138
	139	CMP_NAM=${1:-$COMPILER}
	140	# Copy job_batch_COMPILER file for specific compiler into job_batch_template
	141	cd ${SETTE_DIR}
[4245]	142	cp BATCH_TEMPLATE/${JOB_PREFIX}-${COMPILER} job_batch_template \|\| exit
[10747]	143	# Description of available configurations:
	144	# GYRE_PISCES :
	145	# ORCA2_ICE_PISCES :
	146	# ORCA2_OFF_PISCES :
	147	# AMM12 :
	148	# SAS :
	149	# ORCA2_ICE_OBS :
	150	# AGRIF : test AGRIF in a double zoom configuration in the nordic seas + 1 zoom in the eq. Pacific (AGRIF_DEMO)
	151	# and check that key_agrif without zoom = no key_agrif
	152	# SPITZ12 : regional configuration including sea-ice and tides (Spitzbergen)
[4147]	153
[10747]	154	for config in ${TEST_CONFIGS}
[3520]	155	do
	156
[9518]	157	# -----------
	158	# GYRE_PISCES
	159	# -----------
[10747]	160	if [ ${config} == "GYRE_PISCES" ] ; then
[9518]	161	## Restartability tests for GYRE_PISCES
[3520]	162	export TEST_NAME="LONG"
[9658]	163	cd ${MAIN_DIR}
[12289]	164	#
	165	# syncronisation if target directory/file exist (not done by makenemo)
	166	. ${SETTE_DIR}/all_functions.sh
[12422]	167	sync_config GYRE_PISCES GYRE_PISCES_ST 'cfgs'
	168	clean_config GYRE_PISCES GYRE_PISCES_ST 'cfgs'
[12289]	169	#
[11497]	170	. ./makenemo -m ${CMP_NAM} -n GYRE_PISCES_ST -r GYRE_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]	171	cd ${SETTE_DIR}
[4252]	172	. ./param.cfg
	173	. ./all_functions.sh
	174	. ./prepare_exe_dir.sh
[10755]	175	set_valid_dir
[10698]	176	clean_valid_dir
[3520]	177	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	178	NPROC=8
[4245]	179	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[4147]	180	cd ${EXE_DIR}
[7715]	181	set_namelist namelist_cfg cn_exp \"GYREPIS_LONG\"
[4147]	182	set_namelist namelist_cfg nn_it000 1
[9560]	183	set_namelist namelist_cfg nn_itend 1080
	184	set_namelist namelist_cfg nn_stock 540
[7646]	185	set_namelist namelist_cfg ln_linssh .true.
[9525]	186	set_namelist namelist_cfg jpni 2
	187	set_namelist namelist_cfg jpnj 4
[10573]	188	set_namelist namelist_cfg sn_cfctl%l_config .true.
	189	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	190	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[4245]	191	if [ ${USING_MPMD} == "yes" ] ; then
	192	set_xio_using_server iodef.xml true
	193	else
	194	set_xio_using_server iodef.xml false
	195	fi
	196	cd ${SETTE_DIR}
[10755]	197	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	198
	199	cd ${SETTE_DIR}
	200	export TEST_NAME="SHORT"
[4252]	201	. ./prepare_exe_dir.sh
[10755]	202	set_valid_dir
[10698]	203	clean_valid_dir
[3520]	204	cd ${EXE_DIR}
[7715]	205	set_namelist namelist_cfg cn_exp \"GYREPIS_SHORT\"
[9560]	206	set_namelist namelist_cfg nn_it000 541
	207	set_namelist namelist_cfg nn_itend 1080
	208	set_namelist namelist_cfg nn_stock 540
[4147]	209	set_namelist namelist_cfg ln_rstart .true.
	210	set_namelist namelist_cfg nn_rstctl 2
[7646]	211	set_namelist namelist_cfg ln_linssh .true.
[9525]	212	set_namelist namelist_cfg jpni 2
	213	set_namelist namelist_cfg jpnj 4
[10573]	214	set_namelist namelist_cfg sn_cfctl%l_config .true.
	215	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	216	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[7744]	217	set_namelist namelist_top_cfg ln_rsttr .true.
	218	set_namelist namelist_top_cfg nn_rsttr 2
[9560]	219	set_namelist namelist_cfg cn_ocerst_in \"GYREPIS_LONG_00000540_restart\"
	220	set_namelist namelist_top_cfg cn_trcrst_in \"GYREPIS_LONG_00000540_restart_trc\"
[4245]	221	if [ ${USING_MPMD} == "yes" ] ; then
	222	set_xio_using_server iodef.xml true
	223	else
	224	set_xio_using_server iodef.xml false
	225	fi
[3537]	226	for (( i=1; i<=$NPROC; i++)) ; do
	227	L_NPROC=$(( $i - 1 ))
	228	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[9560]	229	ln -sf ../LONG/GYREPIS_LONG_00000540_restart_${L_NPROC}.nc .
	230	ln -sf ../LONG/GYREPIS_LONG_00000540_restart_trc_${L_NPROC}.nc .
[3537]	231	done
[3520]	232	cd ${SETTE_DIR}
[10755]	233	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	234	cd ${SETTE_DIR}
[3532]	235	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	236
[9518]	237	## Reproducibility tests for GYRE_PISCES
[9525]	238	export TEST_NAME="REPRO_2_4"
[9658]	239	cd ${MAIN_DIR}
[3520]	240	cd ${SETTE_DIR}
[4252]	241	. ./param.cfg
	242	. ./all_functions.sh
	243	. ./prepare_exe_dir.sh
[10755]	244	set_valid_dir
[10698]	245	clean_valid_dir
[3520]	246	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	247	NPROC=8
[4245]	248	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	249	cd ${EXE_DIR}
[7715]	250	set_namelist namelist_cfg cn_exp \"GYREPIS_48\"
[4147]	251	set_namelist namelist_cfg nn_it000 1
[9560]	252	set_namelist namelist_cfg nn_itend 1080
[7646]	253	set_namelist namelist_cfg ln_linssh .true.
[9525]	254	set_namelist namelist_cfg jpni 2
	255	set_namelist namelist_cfg jpnj 4
[10573]	256	set_namelist namelist_cfg sn_cfctl%l_config .true.
	257	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	258	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[4245]	259	if [ ${USING_MPMD} == "yes" ] ; then
	260	set_xio_using_server iodef.xml true
	261	else
	262	set_xio_using_server iodef.xml false
	263	fi
[3520]	264	cd ${SETTE_DIR}
[10755]	265	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	266	cd ${SETTE_DIR}
	267	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	268
	269	cd ${SETTE_DIR}
[9525]	270	export TEST_NAME="REPRO_4_2"
[4252]	271	. ./prepare_exe_dir.sh
[10755]	272	set_valid_dir
[10698]	273	clean_valid_dir
[3680]	274	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	275	NPROC=8
[4245]	276	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	277	cd ${EXE_DIR}
[7715]	278	set_namelist namelist_cfg cn_exp \"GYREPIS_84\"
[4147]	279	set_namelist namelist_cfg nn_it000 1
[9560]	280	set_namelist namelist_cfg nn_itend 1080
[7646]	281	set_namelist namelist_cfg ln_linssh .true.
[9525]	282	set_namelist namelist_cfg jpni 4
	283	set_namelist namelist_cfg jpnj 2
[10573]	284	set_namelist namelist_cfg sn_cfctl%l_config .true.
	285	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	286	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[4245]	287	if [ ${USING_MPMD} == "yes" ] ; then
	288	set_xio_using_server iodef.xml true
	289	else
	290	set_xio_using_server iodef.xml false
	291	fi
[3520]	292	cd ${SETTE_DIR}
[10755]	293	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	294	cd ${SETTE_DIR}
	295	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3532]	296
[3520]	297	fi
	298
[9518]	299	# -----------------
[9663]	300	# ORCA2_ICE_PISCES
[9518]	301	# -----------------
[10747]	302	if [ ${config} == "ORCA2_ICE_PISCES" ] ; then
[9663]	303	## Restartability tests for ORCA2_ICE_PISCES
[7646]	304	export TEST_NAME="LONG"
[9658]	305	cd ${MAIN_DIR}
[12289]	306	#
	307	# syncronisation if target directory/file exist (not done by makenemo)
	308	. ${SETTE_DIR}/all_functions.sh
[12422]	309	sync_config ORCA2_ICE_PISCES ORCA2_ICE_PISCES_ST 'cfgs'
	310	clean_config ORCA2_ICE_PISCES ORCA2_ICE_PISCES_ST 'cfgs'
[12289]	311	#
[11497]	312	. ./makenemo -m ${CMP_NAM} -n ORCA2_ICE_PISCES_ST -r ORCA2_ICE_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[7646]	313	cd ${SETTE_DIR}
	314	. ./param.cfg
	315	. ./all_functions.sh
	316	. ./prepare_exe_dir.sh
[10755]	317	set_valid_dir
[10698]	318	clean_valid_dir
[7646]	319	JOB_FILE=${EXE_DIR}/run_job.sh
	320	NPROC=32
	321	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	322	cd ${EXE_DIR}
	323	set_namelist namelist_cfg cn_exp \"O2L3P_LONG\"
	324	set_namelist namelist_cfg nn_it000 1
[10750]	325	set_namelist namelist_cfg nn_itend 992
	326	set_namelist namelist_cfg nn_stock 496
[7646]	327	set_namelist namelist_cfg jpni 4
	328	set_namelist namelist_cfg jpnj 8
[10573]	329	set_namelist namelist_cfg sn_cfctl%l_config .true.
	330	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	331	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9933]	332	set_namelist namelist_cfg ln_use_calving .true.
[10189]	333	set_namelist namelist_cfg ln_wave .true.
	334	set_namelist namelist_cfg ln_cdgw .true.
	335	set_namelist namelist_cfg ln_sdw .true.
	336	set_namelist namelist_cfg nn_sdrift 1
	337	set_namelist namelist_cfg ln_stcor .true.
	338	set_namelist namelist_cfg ln_tauwoc .true.
[9904]	339	#
	340	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10687]	341	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[9904]	342	#
[9019]	343	set_namelist namelist_ice_cfg ln_icediachk .true.
[4147]	344	set_namelist namelist_top_cfg ln_trcdta .false.
[12445]	345	set_namelist namelist_top_cfg ln_trcbc .false.
	346	# put ln_ironsed, ln_hydrofe to false
[3520]	347	# if not you need input files, and for tests is not necessary
[4147]	348	set_namelist namelist_pisces_cfg ln_varpar .false.
	349	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	350	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	351	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[9203]	352	# put ln_pisdmp to false : no restoring to global mean value
	353	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	354	if [ ${USING_MPMD} == "yes" ] ; then
	355	set_xio_using_server iodef.xml true
	356	else
	357	set_xio_using_server iodef.xml false
	358	fi
[3520]	359	cd ${SETTE_DIR}
[10755]	360	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3532]	361
	362	cd ${SETTE_DIR}
[3520]	363	export TEST_NAME="SHORT"
[4252]	364	. ./prepare_exe_dir.sh
[10755]	365	set_valid_dir
[10698]	366	clean_valid_dir
[3520]	367	cd ${EXE_DIR}
[7646]	368	set_namelist namelist_cfg cn_exp \"O2L3P_SHORT\"
[10750]	369	set_namelist namelist_cfg nn_it000 497
	370	set_namelist namelist_cfg nn_itend 992
	371	set_namelist namelist_cfg nn_stock 496
[4147]	372	set_namelist namelist_cfg ln_rstart .true.
	373	set_namelist namelist_cfg nn_rstctl 2
[7646]	374	set_namelist namelist_cfg jpni 4
	375	set_namelist namelist_cfg jpnj 8
[10573]	376	set_namelist namelist_cfg sn_cfctl%l_config .true.
	377	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	378	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9920]	379	set_namelist namelist_cfg nn_test_icebergs -1
[10189]	380	set_namelist namelist_cfg ln_wave .true.
	381	set_namelist namelist_cfg ln_cdgw .true.
	382	set_namelist namelist_cfg ln_sdw .true.
	383	set_namelist namelist_cfg nn_sdrift 1
	384	set_namelist namelist_cfg ln_stcor .true.
	385	set_namelist namelist_cfg ln_tauwoc .true.
[9904]	386	#
	387	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10732]	388	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[9904]	389	#
[9933]	390	set_namelist namelist_ice_cfg ln_icediachk .true.
[4147]	391	set_namelist namelist_top_cfg ln_rsttr .true.
	392	set_namelist namelist_top_cfg nn_rsttr 2
[10750]	393	set_namelist namelist_cfg cn_ocerst_in \"O2L3P_LONG_00000496_restart\"
[12568]	394	set_namelist namelist_cfg cn_icbrst_in \"O2L3P_LONG_00000496_restart_icb\"
[10750]	395	set_namelist namelist_top_cfg cn_trcrst_in \"O2L3P_LONG_00000496_restart_trc\"
	396	set_namelist namelist_ice_cfg cn_icerst_in \"O2L3P_LONG_00000496_restart_ice\"
[12445]	397	set_namelist namelist_top_cfg ln_trcbc .false.
	398	# put ln_ironsed, ln_hydrofe to false
[3520]	399	# if not you need input files, and for tests is not necessary
[4147]	400	set_namelist namelist_pisces_cfg ln_varpar .false.
	401	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	402	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	403	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	404	# put ln_pisdmp to false : no restoring to global mean value
[4147]	405	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[3537]	406	for (( i=1; i<=$NPROC; i++)) ; do
	407	L_NPROC=$(( $i - 1 ))
	408	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[10750]	409	ln -sf ../LONG/O2L3P_LONG_00000496_restart_${L_NPROC}.nc .
	410	ln -sf ../LONG/O2L3P_LONG_00000496_restart_trc_${L_NPROC}.nc .
	411	ln -sf ../LONG/O2L3P_LONG_00000496_restart_ice_${L_NPROC}.nc .
[9904]	412	if [ ${USING_ICEBERGS} == "yes" ]
	413	then
[12568]	414	ln -sf ../LONG/O2L3P_LONG_00000496_restart_icb_${L_NPROC}.nc O2L3P_LONG_00000496_restart_icb_${L_NPROC}.nc
[9904]	415	fi
[3537]	416	done
[4245]	417	if [ ${USING_MPMD} == "yes" ] ; then
	418	set_xio_using_server iodef.xml true
	419	else
	420	set_xio_using_server iodef.xml false
	421	fi
[3520]	422	cd ${SETTE_DIR}
[10755]	423	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	424	cd ${SETTE_DIR}
[3532]	425	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	426
[9663]	427	## Reproducibility tests for ORCA2_ICE_PISCES
[7646]	428	export TEST_NAME="REPRO_4_8"
[9658]	429	cd ${MAIN_DIR}
[3520]	430	cd ${SETTE_DIR}
[4252]	431	. ./param.cfg
	432	. ./all_functions.sh
	433	. ./prepare_exe_dir.sh
[10755]	434	set_valid_dir
[10698]	435	clean_valid_dir
[3520]	436	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	437	NPROC=32
[4245]	438	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	439	cd ${EXE_DIR}
[9019]	440	set_namelist namelist_cfg cn_exp \"O2L3P_48\"
[4147]	441	set_namelist namelist_cfg nn_it000 1
[10750]	442	set_namelist namelist_cfg nn_itend 992
[4147]	443	set_namelist namelist_cfg jpni 4
[7646]	444	set_namelist namelist_cfg jpnj 8
[10573]	445	set_namelist namelist_cfg sn_cfctl%l_config .true.
	446	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	447	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[10189]	448	set_namelist namelist_cfg ln_wave .true.
	449	set_namelist namelist_cfg ln_cdgw .true.
	450	set_namelist namelist_cfg ln_sdw .true.
	451	set_namelist namelist_cfg nn_sdrift 1
	452	set_namelist namelist_cfg ln_stcor .true.
	453	set_namelist namelist_cfg ln_tauwoc .true.
	454
[9904]	455	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10687]	456	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
	457
[4147]	458	set_namelist namelist_top_cfg ln_trcdta .false.
[12445]	459	set_namelist namelist_top_cfg ln_trcbc .false.
	460	# put ln_ironsed, ln_hydrofe to false
[3520]	461	# if not you need input files, and for tests is not necessary
[4147]	462	set_namelist namelist_pisces_cfg ln_varpar .false.
	463	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	464	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	465	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	466	# put ln_pisdmp to false : no restoring to global mean value
[4147]	467	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	468	if [ ${USING_MPMD} == "yes" ] ; then
	469	set_xio_using_server iodef.xml true
	470	else
	471	set_xio_using_server iodef.xml false
	472	fi
[3520]	473	cd ${SETTE_DIR}
[10755]	474	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	475	cd ${SETTE_DIR}
[3532]	476	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	477
	478	cd ${SETTE_DIR}
[7646]	479	export TEST_NAME="REPRO_8_4"
[4252]	480	. ./prepare_exe_dir.sh
[10755]	481	set_valid_dir
[10698]	482	clean_valid_dir
[3680]	483	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	484	NPROC=32
[4245]	485	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	486	cd ${EXE_DIR}
[9019]	487	set_namelist namelist_cfg cn_exp \"O2L3P_84\"
[4147]	488	set_namelist namelist_cfg nn_it000 1
[10750]	489	set_namelist namelist_cfg nn_itend 992
[7646]	490	set_namelist namelist_cfg jpni 8
	491	set_namelist namelist_cfg jpnj 4
[10573]	492	set_namelist namelist_cfg sn_cfctl%l_config .true.
	493	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	494	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[10189]	495	set_namelist namelist_cfg ln_wave .true.
	496	set_namelist namelist_cfg ln_cdgw .true.
	497	set_namelist namelist_cfg ln_sdw .true.
	498	set_namelist namelist_cfg nn_sdrift 1
	499	set_namelist namelist_cfg ln_stcor .true.
	500	set_namelist namelist_cfg ln_tauwoc .true.
[10687]	501
[9904]	502	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10687]	503	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
	504
[4147]	505	set_namelist namelist_top_cfg ln_trcdta .false.
[12445]	506	set_namelist namelist_top_cfg ln_trcbc .false.
	507	# put ln_ironsed, ln_hydrofe to false
[3520]	508	# if not you need input files, and for tests is not necessary
[4147]	509	set_namelist namelist_pisces_cfg ln_varpar .false.
	510	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	511	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	512	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	513	# put ln_pisdmp to false : no restoring to global mean value
[4147]	514	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	515	if [ ${USING_MPMD} == "yes" ] ; then
	516	set_xio_using_server iodef.xml true
	517	else
	518	set_xio_using_server iodef.xml false
	519	fi
[3520]	520	cd ${SETTE_DIR}
[10755]	521	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	522	cd ${SETTE_DIR}
	523	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	524	fi
	525
[9518]	526	# ----------------
	527	# ORCA2_OFF_PISCES
	528	# ----------------
[10747]	529	if [ ${config} == "ORCA2_OFF_PISCES" ] ; then
[9518]	530	## Restartability tests for ORCA2_OFF_PISCES
[3520]	531	export TEST_NAME="LONG"
[9658]	532	cd ${MAIN_DIR}
[12289]	533	#
	534	# syncronisation if target directory/file exist (not done by makenemo)
	535	. ${SETTE_DIR}/all_functions.sh
[12422]	536	sync_config ORCA2_OFF_PISCES ORCA2_OFF_PISCES_ST 'cfgs'
	537	clean_config ORCA2_OFF_PISCES ORCA2_OFF_PISCES_ST 'cfgs'
[12289]	538	#
[11497]	539	. ./makenemo -m ${CMP_NAM} -n ORCA2_OFF_PISCES_ST -r ORCA2_OFF_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]	540	cd ${SETTE_DIR}
[4252]	541	. ./param.cfg
	542	. ./all_functions.sh
	543	. ./prepare_exe_dir.sh
[10755]	544	set_valid_dir
[10698]	545	clean_valid_dir
[3520]	546	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	547	NPROC=32
[4245]	548	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	549	cd ${EXE_DIR}
[4147]	550	set_namelist namelist_cfg cn_exp \"OFFP_LONG\"
	551	set_namelist namelist_cfg nn_it000 1
[9560]	552	set_namelist namelist_cfg nn_itend 380
	553	set_namelist namelist_cfg nn_stock 190
[7646]	554	set_namelist namelist_cfg jpni 4
	555	set_namelist namelist_cfg jpnj 8
[10573]	556	set_namelist namelist_cfg sn_cfctl%l_config .true.
	557	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	558	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	559	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	560	set_namelist namelist_top_cfg ln_trcdta .false.
[12445]	561	set_namelist namelist_top_cfg ln_trcbc .false.
	562	# put ln_ironsed, ln_hydrofe to false
[3520]	563	# if not you need input files, and for tests is not necessary
[4147]	564	set_namelist namelist_pisces_cfg ln_varpar .false.
	565	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	566	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	567	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	568	# put ln_pisdmp to false : no restoring to global mean value
[4147]	569	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	570	if [ ${USING_MPMD} == "yes" ] ; then
	571	set_xio_using_server iodef.xml true
	572	else
	573	set_xio_using_server iodef.xml false
	574	fi
[3520]	575	cd ${SETTE_DIR}
[10755]	576	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	577
	578	cd ${SETTE_DIR}
	579	export TEST_NAME="SHORT"
[4252]	580	. ./prepare_exe_dir.sh
[10755]	581	set_valid_dir
[10698]	582	clean_valid_dir
[3520]	583	cd ${EXE_DIR}
[4147]	584	set_namelist namelist_cfg cn_exp \"OFFP_SHORT\"
[9560]	585	set_namelist namelist_cfg nn_it000 191
	586	set_namelist namelist_cfg nn_itend 380
	587	set_namelist namelist_cfg nn_stock 190
[7646]	588	set_namelist namelist_cfg jpni 4
	589	set_namelist namelist_cfg jpnj 8
[10573]	590	set_namelist namelist_cfg sn_cfctl%l_config .true.
	591	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	592	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	593	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	594	set_namelist namelist_top_cfg ln_rsttr .true.
	595	set_namelist namelist_top_cfg nn_rsttr 2
[9560]	596	set_namelist namelist_top_cfg cn_trcrst_in \"OFFP_LONG_00000190_restart_trc\"
[3537]	597	for (( i=1; i<=$NPROC; i++)) ; do
	598	L_NPROC=$(( $i - 1 ))
	599	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[9560]	600	ln -sf ../LONG/OFFP_LONG_00000190_restart_trc_${L_NPROC}.nc .
[3537]	601	done
[12445]	602	set_namelist namelist_top_cfg ln_trcbc .false.
	603	# put ln_ironsed, ln_hydrofe to false
[3520]	604	# if not you need input files, and for tests is not necessary
[4147]	605	set_namelist namelist_pisces_cfg ln_varpar .false.
	606	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	607	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	608	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	609	# put ln_pisdmp to false : no restoring to global mean value
[4147]	610	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	611	if [ ${USING_MPMD} == "yes" ] ; then
	612	set_xio_using_server iodef.xml true
	613	else
	614	set_xio_using_server iodef.xml false
	615	fi
[3520]	616	cd ${SETTE_DIR}
[10755]	617	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	618	cd ${SETTE_DIR}
	619	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	620
[9518]	621	## Reproducibility tests for ORCA2_OFF_PISCES
[7646]	622	export TEST_NAME="REPRO_4_8"
[9658]	623	cd ${MAIN_DIR}
[3520]	624	cd ${SETTE_DIR}
[4252]	625	. ./param.cfg
	626	. ./all_functions.sh
	627	. ./prepare_exe_dir.sh
[10755]	628	set_valid_dir
[10698]	629	clean_valid_dir
[3520]	630	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	631	NPROC=32
[4245]	632	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	633	cd ${EXE_DIR}
[9019]	634	set_namelist namelist_cfg cn_exp \"OFFP_48\"
[4147]	635	set_namelist namelist_cfg nn_it000 1
[9560]	636	set_namelist namelist_cfg nn_itend 380
[4147]	637	set_namelist namelist_cfg jpni 4
[7646]	638	set_namelist namelist_cfg jpnj 8
[10573]	639	set_namelist namelist_cfg sn_cfctl%l_config .true.
	640	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	641	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	642	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	643	set_namelist namelist_top_cfg ln_trcdta .false.
[12445]	644	set_namelist namelist_top_cfg ln_trcbc .false.
	645	# put ln_ironsed, ln_hydrofe to false
[3520]	646	# if not you need input files, and for tests is not necessary
[4147]	647	set_namelist namelist_pisces_cfg ln_varpar .false.
	648	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	649	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	650	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	651	# put ln_pisdmp to false : no restoring to global mean value
[4147]	652	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	653	if [ ${USING_MPMD} == "yes" ] ; then
	654	set_xio_using_server iodef.xml true
	655	else
	656	set_xio_using_server iodef.xml false
	657	fi
[3520]	658	cd ${SETTE_DIR}
[10755]	659	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	660	cd ${SETTE_DIR}
[3532]	661	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	662
	663	cd ${SETTE_DIR}
[7646]	664	export TEST_NAME="REPRO_8_4"
[4252]	665	. ./prepare_exe_dir.sh
[10755]	666	set_valid_dir
[10698]	667	clean_valid_dir
[3680]	668	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	669	NPROC=32
[4245]	670	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	671	cd ${EXE_DIR}
[9019]	672	set_namelist namelist_cfg cn_exp \"OFFP_84\"
[4147]	673	set_namelist namelist_cfg nn_it000 1
[9560]	674	set_namelist namelist_cfg nn_itend 380
[7646]	675	set_namelist namelist_cfg jpni 8
	676	set_namelist namelist_cfg jpnj 4
[10573]	677	set_namelist namelist_cfg sn_cfctl%l_config .true.
	678	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	679	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	680	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	681	set_namelist namelist_top_cfg ln_trcdta .false.
[12445]	682	set_namelist namelist_top_cfg ln_trcbc .false.
	683	# put ln_ironsed, ln_hydrofe to false
[3520]	684	# if not you need input files, and for tests is not necessary
[4147]	685	set_namelist namelist_pisces_cfg ln_varpar .false.
	686	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	687	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	688	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	689	# put ln_pisdmp to false : no restoring to global mean value
[4147]	690	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	691	if [ ${USING_MPMD} == "yes" ] ; then
	692	set_xio_using_server iodef.xml true
	693	else
	694	set_xio_using_server iodef.xml false
	695	fi
[3520]	696	cd ${SETTE_DIR}
[10755]	697	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	698	cd ${SETTE_DIR}
	699	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	700	fi
	701
[9518]	702	# -----
	703	# AMM12
	704	# -----
[10747]	705	if [ ${config} == "AMM12" ] ; then
[3532]	706	## Restartability tests for AMM12
	707	export TEST_NAME="LONG"
[9658]	708	cd ${MAIN_DIR}
[12289]	709	#
	710	# syncronisation if target directory/file exist (not done by makenemo)
	711	. ${SETTE_DIR}/all_functions.sh
[12422]	712	sync_config AMM12 AMM12_ST 'cfgs'
	713	clean_config AMM12 AMM12_ST 'cfgs'
[12289]	714	#
[11497]	715	. ./makenemo -m ${CMP_NAM} -n AMM12_ST -r AMM12 -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]	716	cd ${SETTE_DIR}
[4252]	717	. ./param.cfg
	718	. ./all_functions.sh
	719	. ./prepare_exe_dir.sh
[10755]	720	set_valid_dir
[10698]	721	clean_valid_dir
[3520]	722	JOB_FILE=${EXE_DIR}/run_job.sh
	723	NPROC=32
[4245]	724	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	725	cd ${EXE_DIR}
[9019]	726	set_namelist namelist_cfg cn_exp \"AMM12_LONG\"
[4147]	727	set_namelist namelist_cfg nn_it000 1
[4252]	728	set_namelist namelist_cfg nn_itend 576
	729	set_namelist namelist_cfg nn_stock 288
[7646]	730	set_namelist namelist_cfg jpni 4
	731	set_namelist namelist_cfg jpnj 8
[10573]	732	set_namelist namelist_cfg sn_cfctl%l_config .true.
	733	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4245]	734	if [ ${USING_MPMD} == "yes" ] ; then
	735	set_xio_using_server iodef.xml true
	736	else
	737	set_xio_using_server iodef.xml false
	738	fi
[3520]	739	cd ${SETTE_DIR}
[10755]	740	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	741
	742	cd ${SETTE_DIR}
[3532]	743	export TEST_NAME="SHORT"
[4379]	744	. ./prepare_exe_dir.sh
[10755]	745	set_valid_dir
[10698]	746	clean_valid_dir
[3520]	747	cd ${EXE_DIR}
[9019]	748	set_namelist namelist_cfg cn_exp \"AMM12_SHORT\"
[4252]	749	set_namelist namelist_cfg nn_it000 289
	750	set_namelist namelist_cfg nn_itend 576
[7646]	751	set_namelist namelist_cfg jpni 4
	752	set_namelist namelist_cfg jpnj 8
[10573]	753	set_namelist namelist_cfg sn_cfctl%l_config .true.
	754	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4147]	755	set_namelist namelist_cfg ln_rstart .true.
	756	set_namelist namelist_cfg nn_rstctl 2
[9019]	757	set_namelist namelist_cfg cn_ocerst_in \"AMM12_LONG_00000288_restart\"
[4252]	758	set_namelist namelist_cfg nn_date0 20120102
[3537]	759	for (( i=1; i<=$NPROC; i++)) ; do
	760	L_NPROC=$(( $i - 1 ))
	761	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[9019]	762	ln -sf ../LONG/AMM12_LONG_00000288_restart_${L_NPROC}.nc .
[3537]	763	done
[4245]	764	if [ ${USING_MPMD} == "yes" ] ; then
	765	set_xio_using_server iodef.xml true
	766	else
	767	set_xio_using_server iodef.xml false
	768	fi
[3520]	769	cd ${SETTE_DIR}
[10755]	770	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	771	cd ${SETTE_DIR}
[3532]	772	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	773
[3680]	774	## Reproducibility tests for AMM12
	775	export TEST_NAME="REPRO_8_4"
[9658]	776	cd ${MAIN_DIR}
[3520]	777	cd ${SETTE_DIR}
[4252]	778	. ./param.cfg
	779	. ./all_functions.sh
	780	. ./prepare_exe_dir.sh
[10755]	781	set_valid_dir
[10698]	782	clean_valid_dir
[3520]	783	JOB_FILE=${EXE_DIR}/run_job.sh
	784	NPROC=32
[4245]	785	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	786	cd ${EXE_DIR}
[9019]	787	set_namelist namelist_cfg cn_exp \"AMM12_84\"
[4147]	788	set_namelist namelist_cfg nn_it000 1
	789	set_namelist namelist_cfg nn_itend 576
	790	set_namelist namelist_cfg jpni 8
	791	set_namelist namelist_cfg jpnj 4
[10573]	792	set_namelist namelist_cfg sn_cfctl%l_config .true.
	793	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4245]	794	if [ ${USING_MPMD} == "yes" ] ; then
	795	set_xio_using_server iodef.xml true
	796	else
	797	set_xio_using_server iodef.xml false
	798	fi
[3520]	799	cd ${SETTE_DIR}
[10755]	800	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	801	cd ${SETTE_DIR}
	802	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	803
	804	cd ${SETTE_DIR}
[3680]	805	export TEST_NAME="REPRO_4_8"
[4252]	806	. ./prepare_exe_dir.sh
[10755]	807	set_valid_dir
[10698]	808	clean_valid_dir
[5478]	809	JOB_FILE=${EXE_DIR}/run_job.sh
	810	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	811	cd ${EXE_DIR}
[9019]	812	set_namelist namelist_cfg cn_exp \"AMM12_48\"
[4147]	813	set_namelist namelist_cfg nn_it000 1
	814	set_namelist namelist_cfg nn_itend 576
	815	set_namelist namelist_cfg jpni 4
	816	set_namelist namelist_cfg jpnj 8
[10573]	817	set_namelist namelist_cfg sn_cfctl%l_config .true.
	818	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4245]	819	if [ ${USING_MPMD} == "yes" ] ; then
	820	set_xio_using_server iodef.xml true
	821	else
	822	set_xio_using_server iodef.xml false
	823	fi
[3520]	824	cd ${SETTE_DIR}
[10755]	825	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	826	cd ${SETTE_DIR}
[3532]	827	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	828	fi
	829
	830
[9518]	831	# ---------
	832	# ORCA2_SAS
	833	# ---------
[10747]	834	if [ ${config} == "SAS" ] ; then
[9518]	835	## Restartability tests
[4147]	836	export TEST_NAME="LONG"
[9658]	837	cd ${MAIN_DIR}
[12289]	838	#
	839	# syncronisation if target directory/file exist (not done by makenemo)
	840	. ${SETTE_DIR}/all_functions.sh
[12422]	841	sync_config ORCA2_SAS_ICE ORCA2_SAS_ICE_ST 'cfgs'
	842	clean_config ORCA2_SAS_ICE ORCA2_SAS_ICE_ST 'cfgs'
[12289]	843	#
[11497]	844	. ./makenemo -m ${CMP_NAM} -n ORCA2_SAS_ICE_ST -r ORCA2_SAS_ICE -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[4147]	845	cd ${SETTE_DIR}
[4252]	846	. ./param.cfg
	847	. ./all_functions.sh
	848	. ./prepare_exe_dir.sh
[10755]	849	set_valid_dir
[10698]	850	clean_valid_dir
[4147]	851	JOB_FILE=${EXE_DIR}/run_job.sh
	852	NPROC=32
[7646]	853	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[4147]	854	cd ${EXE_DIR}
	855	set_namelist namelist_cfg cn_exp \"SAS\"
	856	set_namelist namelist_cfg nn_it000 1
[10750]	857	set_namelist namelist_cfg nn_itend 256
	858	set_namelist namelist_cfg nn_stock 128
[7646]	859	set_namelist namelist_cfg jpni 4
	860	set_namelist namelist_cfg jpnj 8
[10573]	861	set_namelist namelist_cfg sn_cfctl%l_config .true.
	862	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9019]	863	set_namelist namelist_ice_cfg ln_icediachk .true.
[4245]	864	if [ ${USING_MPMD} == "yes" ] ; then
	865	set_xio_using_server iodef.xml true
	866	else
	867	set_xio_using_server iodef.xml false
	868	fi
[4147]	869	cd ${SETTE_DIR}
[10755]	870	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4147]	871
	872	cd ${SETTE_DIR}
	873	export TEST_NAME="SHORT"
[4252]	874	. ./prepare_exe_dir.sh
[10755]	875	set_valid_dir
[10698]	876	clean_valid_dir
[4147]	877	cd ${EXE_DIR}
	878	set_namelist namelist_cfg cn_exp \"SAS\"
[10750]	879	set_namelist namelist_cfg nn_it000 129
	880	set_namelist namelist_cfg nn_itend 256
[7646]	881	set_namelist namelist_cfg jpni 4
	882	set_namelist namelist_cfg jpnj 8
[10573]	883	set_namelist namelist_cfg sn_cfctl%l_config .true.
	884	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[7646]	885	set_namelist namelist_cfg ln_rstart .true.
[4147]	886	set_namelist namelist_cfg nn_rstctl 2
[9019]	887	set_namelist namelist_cfg nn_date0 010109
[10750]	888	set_namelist namelist_cfg cn_ocerst_in \"SAS_00000128_restart\"
	889	set_namelist namelist_ice_cfg cn_icerst_in \"SAS_00000128_restart_ice\"
[4245]	890	if [ ${USING_MPMD} == "yes" ] ; then
	891	set_xio_using_server iodef.xml true
	892	else
	893	set_xio_using_server iodef.xml false
	894	fi
[7646]	895	for (( i=1; i<=$NPROC; i++)) ; do
	896	L_NPROC=$(( $i - 1 ))
	897	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[10750]	898	ln -sf ../LONG/SAS_00000128_restart_${L_NPROC}.nc .
	899	ln -sf ../LONG/SAS_00000128_restart_ice_${L_NPROC}.nc .
[7646]	900	done
[4147]	901	cd ${SETTE_DIR}
[10755]	902	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4147]	903	cd ${SETTE_DIR}
	904	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	905
[9518]	906	## Reproducibility tests
	907	export TEST_NAME="REPRO_4_8"
[9658]	908	cd ${MAIN_DIR}
[4990]	909	cd ${SETTE_DIR}
	910	. ./param.cfg
	911	. ./all_functions.sh
	912	. ./prepare_exe_dir.sh
[10755]	913	set_valid_dir
[10698]	914	clean_valid_dir
[4990]	915	JOB_FILE=${EXE_DIR}/run_job.sh
[9518]	916	NPROC=32
[4990]	917	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	918	cd ${EXE_DIR}
[9518]	919	set_namelist namelist_cfg cn_exp \"SAS_48\"
[4990]	920	set_namelist namelist_cfg nn_it000 1
[10750]	921	set_namelist namelist_cfg nn_itend 80
[9518]	922	set_namelist namelist_cfg jpni 4
	923	set_namelist namelist_cfg jpnj 8
[10573]	924	set_namelist namelist_cfg sn_cfctl%l_config .true.
	925	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4990]	926	if [ ${USING_MPMD} == "yes" ] ; then
	927	set_xio_using_server iodef.xml true
	928	else
	929	set_xio_using_server iodef.xml false
	930	fi
	931	cd ${SETTE_DIR}
[10755]	932	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	933	cd ${SETTE_DIR}
	934	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[9019]	935
[4990]	936	cd ${SETTE_DIR}
[7646]	937	export TEST_NAME="REPRO_8_4"
[4990]	938	. ./prepare_exe_dir.sh
[10755]	939	set_valid_dir
[10698]	940	clean_valid_dir
[4990]	941	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	942	NPROC=32
[4990]	943	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	944	cd ${EXE_DIR}
[9518]	945	set_namelist namelist_cfg cn_exp \"SAS_84\"
[4990]	946	set_namelist namelist_cfg nn_it000 1
[10750]	947	set_namelist namelist_cfg nn_itend 80
[7646]	948	set_namelist namelist_cfg jpni 8
	949	set_namelist namelist_cfg jpnj 4
[10573]	950	set_namelist namelist_cfg sn_cfctl%l_config .true.
	951	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4990]	952	if [ ${USING_MPMD} == "yes" ] ; then
	953	set_xio_using_server iodef.xml true
	954	else
	955	set_xio_using_server iodef.xml false
	956	fi
	957	cd ${SETTE_DIR}
[10755]	958	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	959	cd ${SETTE_DIR}
	960	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	961
	962	fi
	963
[9518]	964
	965	# --------------
[9663]	966	# ORCA2_ICE_OBS
[9518]	967	# --------------
[4990]	968	## Test assimilation interface code, OBS and ASM for reproducibility
	969	## Restartability not tested (ASM code not restartable while increments are being applied)
[10747]	970	if [ ${config} == "ORCA2_ICE_OBS" ] ; then
[9518]	971	## Reproducibility tests
[7646]	972	export TEST_NAME="REPRO_4_8"
[9658]	973	cd ${MAIN_DIR}
[12289]	974	#
	975	# syncronisation if target directory/file exist (not done by makenemo)
	976	. ${SETTE_DIR}/all_functions.sh
[12422]	977	sync_config ORCA2_ICE_PISCES ORCA2_ICE_OBS_ST 'cfgs'
	978	clean_config ORCA2_ICE_PISCES ORCA2_ICE_OBS_ST 'cfgs'
[12289]	979	#
[10687]	980	. ./makenemo -m ${CMP_NAM} -n ORCA2_ICE_OBS_ST -r ORCA2_ICE_PISCES -d "OCE ICE" -j 8 add_key "key_asminc ${ADD_KEYS}" del_key "key_top"
[4990]	981	cd ${SETTE_DIR}
	982	. ./param.cfg
	983	. ./all_functions.sh
	984	. ./prepare_exe_dir.sh
[10755]	985	set_valid_dir
[10698]	986	clean_valid_dir
[4990]	987	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	988	NPROC=32
[4990]	989	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	990	cd ${EXE_DIR}
[9019]	991	set_namelist namelist_cfg cn_exp \"O2L3OBS_48\"
[4990]	992	set_namelist namelist_cfg nn_it000 1
[10750]	993	set_namelist namelist_cfg nn_itend 80
[7646]	994	set_namelist namelist_cfg ln_read_cfg .true.
[4990]	995	set_namelist namelist_cfg jpni 4
[7646]	996	set_namelist namelist_cfg jpnj 8
[10573]	997	set_namelist namelist_cfg sn_cfctl%l_config .true.
	998	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	999	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[6140]	1000	set_namelist namelist_cfg ln_diaobs .true.
[4990]	1001	set_namelist namelist_cfg ln_t3d .true.
	1002	set_namelist namelist_cfg ln_s3d .true.
	1003	set_namelist namelist_cfg ln_sst .true.
	1004	set_namelist namelist_cfg ln_sla .true.
[6140]	1005	set_namelist namelist_cfg ln_sic .true.
	1006	set_namelist namelist_cfg ln_vel3d .true.
[4990]	1007	set_namelist namelist_cfg ln_bkgwri .true.
	1008	set_namelist namelist_cfg ln_trainc .true.
	1009	set_namelist namelist_cfg ln_dyninc .true.
	1010	set_namelist namelist_cfg ln_sshinc .true.
	1011	set_namelist namelist_cfg ln_asmiau .true.
[9663]	1012	#remove all useless options for pisces (due to ORCA2_ICE_PISCES reference configuration)
[7722]	1013	set_namelist namelist_top_cfg ln_trcdta .false.
[12445]	1014	set_namelist namelist_top_cfg ln_trcbc .false.
[7722]	1015	# put ln_ironsed, ln_river, ln_ndepo, ln_dust to false
	1016	# if not you need input files, and for tests is not necessary
	1017	set_namelist namelist_pisces_cfg ln_varpar .false.
	1018	set_namelist namelist_pisces_cfg ln_ironsed .false.
	1019	set_namelist namelist_pisces_cfg ln_ironice .false.
	1020	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[4990]	1021	if [ ${USING_MPMD} == "yes" ] ; then
	1022	set_xio_using_server iodef.xml true
	1023	else
	1024	set_xio_using_server iodef.xml false
	1025	fi
	1026	cd ${SETTE_DIR}
[10755]	1027	. ./prepare_job.sh input_ORCA2_ICE_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1028	cd ${SETTE_DIR}
	1029	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1030
	1031	cd ${SETTE_DIR}
[7646]	1032	export TEST_NAME="REPRO_8_4"
[4990]	1033	. ./prepare_exe_dir.sh
[10755]	1034	set_valid_dir
[10698]	1035	clean_valid_dir
[4990]	1036	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	1037	NPROC=32
[4990]	1038	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1039	cd ${EXE_DIR}
[9019]	1040	set_namelist namelist_cfg cn_exp \"O2L3OBS_84\"
[4990]	1041	set_namelist namelist_cfg nn_it000 1
[10750]	1042	set_namelist namelist_cfg nn_itend 80
[7646]	1043	set_namelist namelist_cfg ln_read_cfg .true.
	1044	set_namelist namelist_cfg jpni 8
	1045	set_namelist namelist_cfg jpnj 4
[10573]	1046	set_namelist namelist_cfg sn_cfctl%l_config .true.
	1047	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	1048	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[6140]	1049	set_namelist namelist_cfg ln_diaobs .true.
[4990]	1050	set_namelist namelist_cfg ln_t3d .true.
	1051	set_namelist namelist_cfg ln_s3d .true.
	1052	set_namelist namelist_cfg ln_sst .true.
	1053	set_namelist namelist_cfg ln_sla .true.
[6140]	1054	set_namelist namelist_cfg ln_sic .true.
	1055	set_namelist namelist_cfg ln_vel3d .true.
[4990]	1056	set_namelist namelist_cfg ln_bkgwri .true.
	1057	set_namelist namelist_cfg ln_trainc .true.
	1058	set_namelist namelist_cfg ln_dyninc .true.
	1059	set_namelist namelist_cfg ln_sshinc .true.
	1060	set_namelist namelist_cfg ln_asmiau .true.
[9663]	1061	#remove all useless options for pisces (due to ORCA2_ICE_PISCES reference configuration)
[7722]	1062	set_namelist namelist_top_cfg ln_trcdta .false.
[12445]	1063	set_namelist namelist_top_cfg ln_trcbc .false.
[7722]	1064	# put ln_ironsed, ln_river, ln_ndepo, ln_dust to false
	1065	# if not you need input files, and for tests is not necessary
	1066	set_namelist namelist_pisces_cfg ln_varpar .false.
	1067	set_namelist namelist_pisces_cfg ln_ironsed .false.
	1068	set_namelist namelist_pisces_cfg ln_ironice .false.
	1069	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[4990]	1070	if [ ${USING_MPMD} == "yes" ] ; then
	1071	set_xio_using_server iodef.xml true
	1072	else
	1073	set_xio_using_server iodef.xml false
	1074	fi
	1075	cd ${SETTE_DIR}
[10755]	1076	. ./prepare_job.sh input_ORCA2_ICE_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1077	cd ${SETTE_DIR}
	1078	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1079	fi
[5589]	1080
[9483]	1081	# ------------
[9663]	1082	# AGRIF ICE
[9483]	1083	# -----------
[10747]	1084	if [ ${config} == "AGRIF" ] ; then
[9518]	1085	## Restartability tests
[9483]	1086	export TEST_NAME="LONG"
[9658]	1087	cd ${MAIN_DIR}
[12289]	1088	#
	1089	# syncronisation if target directory/file exist (not done by makenemo)
	1090	. ${SETTE_DIR}/all_functions.sh
[12422]	1091	sync_config AGRIF_DEMO AGRIF_DEMO_ST 'cfgs'
	1092	clean_config AGRIF_DEMO AGRIF_DEMO_ST 'cfgs'
[12289]	1093	#
[11497]	1094	. ./makenemo -m ${CMP_NAM} -n AGRIF_DEMO_ST -r AGRIF_DEMO -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9483]	1095	cd ${SETTE_DIR}
	1096	. ./param.cfg
	1097	. ./all_functions.sh
	1098	. ./prepare_exe_dir.sh
[10755]	1099	set_valid_dir
[10698]	1100	clean_valid_dir
[9483]	1101	JOB_FILE=${EXE_DIR}/run_job.sh
[9776]	1102	NPROC=16
[9483]	1103	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1104	cd ${EXE_DIR}
	1105	set_namelist namelist_cfg cn_exp \"AGRIF_LONG\"
	1106	set_namelist namelist_cfg nn_it000 1
	1107	set_namelist namelist_cfg nn_itend 20
	1108	set_namelist namelist_cfg nn_stock 10
[10573]	1109	set_namelist namelist_cfg sn_cfctl%l_config .true.
	1110	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1111	set_namelist 1_namelist_cfg cn_exp \"AGRIF_LONG\"
	1112	set_namelist 1_namelist_cfg nn_it000 1
[9776]	1113	set_namelist 1_namelist_cfg nn_itend 20
	1114	set_namelist 1_namelist_cfg nn_stock 10
[10573]	1115	set_namelist 1_namelist_cfg sn_cfctl%l_config .true.
	1116	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1117	set_namelist 2_namelist_cfg cn_exp \"AGRIF_LONG\"
	1118	set_namelist 2_namelist_cfg nn_it000 1
[9776]	1119	set_namelist 2_namelist_cfg nn_itend 80
	1120	set_namelist 2_namelist_cfg nn_stock 40
[10573]	1121	set_namelist 2_namelist_cfg sn_cfctl%l_config .true.
	1122	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[9776]	1123	set_namelist 3_namelist_cfg cn_exp \"AGRIF_LONG\"
	1124	set_namelist 3_namelist_cfg nn_it000 1
	1125	set_namelist 3_namelist_cfg nn_itend 240
	1126	set_namelist 3_namelist_cfg nn_stock 120
[10573]	1127	set_namelist 3_namelist_cfg sn_cfctl%l_config .true.
	1128	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9507]	1129
[9483]	1130	if [ ${USING_MPMD} == "yes" ] ; then
	1131	set_xio_using_server iodef.xml true
	1132	else
	1133	set_xio_using_server iodef.xml false
	1134	fi
	1135	cd ${SETTE_DIR}
[10755]	1136	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1137
	1138	cd ${SETTE_DIR}
	1139	export TEST_NAME="SHORT"
	1140	. ./prepare_exe_dir.sh
[10755]	1141	set_valid_dir
[10698]	1142	clean_valid_dir
[9483]	1143	cd ${EXE_DIR}
	1144	set_namelist namelist_cfg cn_exp \"AGRIF_SHORT\"
	1145	set_namelist namelist_cfg nn_it000 11
	1146	set_namelist namelist_cfg nn_itend 20
	1147	set_namelist namelist_cfg nn_stock 10
[10573]	1148	set_namelist namelist_cfg sn_cfctl%l_config .true.
	1149	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1150	set_namelist namelist_cfg ln_rstart .true.
	1151	set_namelist namelist_cfg nn_rstctl 2
	1152	set_namelist 1_namelist_cfg cn_exp \"AGRIF_SHORT\"
[9776]	1153	set_namelist 1_namelist_cfg nn_it000 11
	1154	set_namelist 1_namelist_cfg nn_itend 20
	1155	set_namelist 1_namelist_cfg nn_stock 10
[10573]	1156	set_namelist 1_namelist_cfg sn_cfctl%l_config .true.
	1157	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1158	set_namelist 1_namelist_cfg ln_rstart .true.
	1159	set_namelist 1_namelist_cfg nn_rstctl 2
	1160	set_namelist 2_namelist_cfg cn_exp \"AGRIF_SHORT\"
[9776]	1161	set_namelist 2_namelist_cfg nn_it000 41
	1162	set_namelist 2_namelist_cfg nn_itend 80
	1163	set_namelist 2_namelist_cfg nn_stock 40
[10573]	1164	set_namelist 2_namelist_cfg sn_cfctl%l_config .true.
	1165	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1166	set_namelist 2_namelist_cfg ln_rstart .true.
	1167	set_namelist 2_namelist_cfg nn_rstctl 2
[9776]	1168	set_namelist 3_namelist_cfg cn_exp \"AGRIF_SHORT\"
	1169	set_namelist 3_namelist_cfg nn_it000 121
	1170	set_namelist 3_namelist_cfg nn_itend 240
	1171	set_namelist 3_namelist_cfg nn_stock 120
[10573]	1172	set_namelist 3_namelist_cfg sn_cfctl%l_config .true.
	1173	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9776]	1174	set_namelist 3_namelist_cfg ln_rstart .true.
	1175	set_namelist 3_namelist_cfg nn_rstctl 2
[9483]	1176	set_namelist namelist_cfg cn_ocerst_in \"AGRIF_LONG_00000010_restart\"
	1177	set_namelist namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_00000010_restart_ice\"
[9776]	1178	set_namelist 1_namelist_cfg cn_ocerst_in \"AGRIF_LONG_00000010_restart\"
	1179	set_namelist 1_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_00000010_restart_ice\"
	1180	set_namelist 2_namelist_cfg cn_ocerst_in \"AGRIF_LONG_00000040_restart\"
	1181	set_namelist 2_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_00000040_restart_ice\"
	1182	set_namelist 3_namelist_cfg cn_ocerst_in \"AGRIF_LONG_00000120_restart\"
	1183	set_namelist 3_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_00000120_restart_ice\"
[9483]	1184
	1185	for (( i=1; i<=$NPROC; i++)) ; do
	1186	L_NPROC=$(( $i - 1 ))
	1187	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	1188	ln -sf ../LONG/AGRIF_LONG_00000010_restart_${L_NPROC}.nc .
	1189	ln -sf ../LONG/AGRIF_LONG_00000010_restart_ice_${L_NPROC}.nc .
[9776]	1190	ln -sf ../LONG/1_AGRIF_LONG_00000010_restart_${L_NPROC}.nc .
	1191	ln -sf ../LONG/1_AGRIF_LONG_00000010_restart_ice_${L_NPROC}.nc .
	1192	ln -sf ../LONG/2_AGRIF_LONG_00000040_restart_${L_NPROC}.nc .
	1193	ln -sf ../LONG/2_AGRIF_LONG_00000040_restart_ice_${L_NPROC}.nc .
	1194	ln -sf ../LONG/3_AGRIF_LONG_00000120_restart_${L_NPROC}.nc .
	1195	ln -sf ../LONG/3_AGRIF_LONG_00000120_restart_ice_${L_NPROC}.nc .
[9483]	1196	done
	1197	if [ ${USING_MPMD} == "yes" ] ; then
	1198	set_xio_using_server iodef.xml true
	1199	else
	1200	set_xio_using_server iodef.xml false
	1201	fi
	1202	cd ${SETTE_DIR}
[10755]	1203	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1204	cd ${SETTE_DIR}
	1205	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1206
[9518]	1207	## Reproducibility tests
[11800]	1208	export TEST_NAME="REPRO_2_8"
[9658]	1209	cd ${MAIN_DIR}
[9483]	1210	cd ${SETTE_DIR}
	1211	. ./param.cfg
	1212	. ./all_functions.sh
	1213	. ./prepare_exe_dir.sh
[10755]	1214	set_valid_dir
[10698]	1215	clean_valid_dir
[9483]	1216	JOB_FILE=${EXE_DIR}/run_job.sh
[11800]	1217	NPROC=16
[9483]	1218	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1219	cd ${EXE_DIR}
[11800]	1220	set_namelist namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1221	set_namelist namelist_cfg nn_it000 1
	1222	set_namelist namelist_cfg nn_itend 20
[11800]	1223	set_namelist namelist_cfg jpni 2
[9483]	1224	set_namelist namelist_cfg jpnj 8
[10573]	1225	set_namelist namelist_cfg sn_cfctl%l_config .true.
	1226	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1227	set_namelist 1_namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1228	set_namelist 1_namelist_cfg nn_it000 1
[9776]	1229	set_namelist 1_namelist_cfg nn_itend 20
[11800]	1230	set_namelist 1_namelist_cfg jpni 2
[9483]	1231	set_namelist 1_namelist_cfg jpnj 8
[10573]	1232	set_namelist 1_namelist_cfg sn_cfctl%l_config .true.
	1233	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1234	set_namelist 2_namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1235	set_namelist 2_namelist_cfg nn_it000 1
[9776]	1236	set_namelist 2_namelist_cfg nn_itend 80
[11800]	1237	set_namelist 2_namelist_cfg jpni 2
[9483]	1238	set_namelist 2_namelist_cfg jpnj 8
[10573]	1239	set_namelist 2_namelist_cfg sn_cfctl%l_config .true.
	1240	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1241	set_namelist 3_namelist_cfg cn_exp \"AGRIF_28\"
[9776]	1242	set_namelist 3_namelist_cfg nn_it000 1
	1243	set_namelist 3_namelist_cfg nn_itend 240
[11800]	1244	set_namelist 3_namelist_cfg jpni 2
[9776]	1245	set_namelist 3_namelist_cfg jpnj 8
[10573]	1246	set_namelist 3_namelist_cfg sn_cfctl%l_config .true.
	1247	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1248
	1249	if [ ${USING_MPMD} == "yes" ] ; then
	1250	set_xio_using_server iodef.xml true
	1251	else
	1252	set_xio_using_server iodef.xml false
	1253	fi
	1254	cd ${SETTE_DIR}
[10755]	1255	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1256	cd ${SETTE_DIR}
	1257	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1258
	1259	cd ${SETTE_DIR}
[11800]	1260	export TEST_NAME="REPRO_4_4"
[9483]	1261	. ./prepare_exe_dir.sh
[10755]	1262	set_valid_dir
[10698]	1263	clean_valid_dir
[9483]	1264	JOB_FILE=${EXE_DIR}/run_job.sh
[11800]	1265	NPROC=16
[9483]	1266	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1267	cd ${EXE_DIR}
[11800]	1268	set_namelist namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1269	set_namelist namelist_cfg nn_it000 1
	1270	set_namelist namelist_cfg nn_itend 20
[11800]	1271	set_namelist namelist_cfg jpni 4
[9483]	1272	set_namelist namelist_cfg jpnj 4
[10573]	1273	set_namelist namelist_cfg sn_cfctl%l_config .true.
	1274	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1275	set_namelist 1_namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1276	set_namelist 1_namelist_cfg nn_it000 1
[9776]	1277	set_namelist 1_namelist_cfg nn_itend 20
[11800]	1278	set_namelist 1_namelist_cfg jpni 4
[9483]	1279	set_namelist 1_namelist_cfg jpnj 4
[10573]	1280	set_namelist 1_namelist_cfg sn_cfctl%l_config .true.
	1281	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1282	set_namelist 2_namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1283	set_namelist 2_namelist_cfg nn_it000 1
[9776]	1284	set_namelist 2_namelist_cfg nn_itend 80
[11800]	1285	set_namelist 2_namelist_cfg jpni 4
[9483]	1286	set_namelist 2_namelist_cfg jpnj 4
[10573]	1287	set_namelist 2_namelist_cfg sn_cfctl%l_config .true.
	1288	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[12445]	1289	set_namelist 3_namelist_cfg cn_exp \"AGRIF_44\"
[9776]	1290	set_namelist 3_namelist_cfg nn_it000 1
	1291	set_namelist 3_namelist_cfg nn_itend 240
[11800]	1292	set_namelist 3_namelist_cfg jpni 4
[9776]	1293	set_namelist 3_namelist_cfg jpnj 4
[10573]	1294	set_namelist 3_namelist_cfg sn_cfctl%l_config .true.
	1295	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1296
	1297	if [ ${USING_MPMD} == "yes" ] ; then
	1298	set_xio_using_server iodef.xml true
	1299	else
	1300	set_xio_using_server iodef.xml false
	1301	fi
	1302	cd ${SETTE_DIR}
[10755]	1303	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1304	cd ${SETTE_DIR}
	1305	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1306
[9507]	1307	## test code corruption with AGRIF (phase 1) ==> Compile with key_agrif but run with no zoom
	1308	export TEST_NAME="ORCA2"
[9658]	1309	cd ${MAIN_DIR}
[9483]	1310	cd ${SETTE_DIR}
	1311	. ./param.cfg
	1312	. ./all_functions.sh
	1313	. ./prepare_exe_dir.sh
[10755]	1314	set_valid_dir
[10698]	1315	clean_valid_dir
[9483]	1316	JOB_FILE=${EXE_DIR}/run_job.sh
	1317	NPROC=32
	1318	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1319	cd ${EXE_DIR}
[9507]	1320	set_namelist namelist_cfg cn_exp \"ORCA2\"
[9483]	1321	set_namelist namelist_cfg nn_it000 1
	1322	set_namelist namelist_cfg nn_itend 150
[10573]	1323	set_namelist namelist_cfg sn_cfctl%l_config .true.
	1324	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9507]	1325
[9483]	1326	# Set the number of fine grids to zero:
	1327	sed -i "1s/.*/0/" ${EXE_DIR}/AGRIF_FixedGrids.in
	1328
	1329	if [ ${USING_MPMD} == "yes" ] ; then
	1330	set_xio_using_server iodef.xml true
	1331	else
	1332	set_xio_using_server iodef.xml false
	1333	fi
	1334	cd ${SETTE_DIR}
[10755]	1335	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1336	cd ${SETTE_DIR}
	1337	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1338
	1339	fi
	1340
[9525]	1341
[9776]	1342	## test code corruption with AGRIF (phase 2) ==> Compile without key_agrif (to be compared with AGRIF_DEMO_ST/ORCA2)
[10747]	1343	if [ ${config} == "AGRIF" ] ; then
[9507]	1344	export TEST_NAME="ORCA2"
[9658]	1345	cd ${MAIN_DIR}
[12289]	1346	#
	1347	# syncronisation if target directory/file exist (not done by makenemo)
	1348	. ${SETTE_DIR}/all_functions.sh
[12422]	1349	sync_config AGRIF_DEMO AGRIF_DEMO_NOAGRIF_ST 'cfgs'
	1350	clean_config AGRIF_DEMO AGRIF_DEMO_NOAGRIF_ST 'cfgs'
[12289]	1351	#
[11497]	1352	. ./makenemo -m ${CMP_NAM} -n AGRIF_DEMO_NOAGRIF_ST -r AGRIF_DEMO -j 8 add_key "${ADD_KEYS}" del_key "key_agrif"
[9483]	1353	cd ${SETTE_DIR}
	1354	. ./param.cfg
	1355	. ./all_functions.sh
	1356	. ./prepare_exe_dir.sh
[10755]	1357	set_valid_dir
[10698]	1358	clean_valid_dir
[9483]	1359	JOB_FILE=${EXE_DIR}/run_job.sh
	1360	NPROC=32
	1361	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1362	cd ${EXE_DIR}
[9507]	1363	set_namelist namelist_cfg cn_exp \"ORCA2\"
[9483]	1364	set_namelist namelist_cfg nn_it000 1
	1365	set_namelist namelist_cfg nn_itend 150
[10573]	1366	set_namelist namelist_cfg sn_cfctl%l_config .true.
	1367	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1368	#
	1369	if [ ${USING_MPMD} == "yes" ] ; then
	1370	set_xio_using_server iodef.xml true
	1371	else
	1372	set_xio_using_server iodef.xml false
	1373	fi
	1374	cd ${SETTE_DIR}
[10755]	1375	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1376	cd ${SETTE_DIR}
	1377	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1378
	1379	fi
	1380
[9553]	1381	# -------
	1382	# SPITZ12
	1383	# -------
[10747]	1384	if [ ${config} == "SPITZ12" ] ; then
[9553]	1385	## Restartability tests
	1386	export TEST_NAME="LONG"
[9658]	1387	cd ${MAIN_DIR}
[12289]	1388	#
	1389	# syncronisation if target directory/file exist (not done by makenemo)
	1390	. ${SETTE_DIR}/all_functions.sh
[12422]	1391	sync_config SPITZ12 SPITZ12_ST 'cfgs'
	1392	clean_config SPITZ12 SPITZ12_ST 'cfgs'
[12289]	1393	#
[11497]	1394	. ./makenemo -m ${CMP_NAM} -n SPITZ12_ST -r SPITZ12 -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9553]	1395	cd ${SETTE_DIR}
	1396	. ./param.cfg
	1397	. ./all_functions.sh
	1398	. ./prepare_exe_dir.sh
[10755]	1399	set_valid_dir
[10698]	1400	clean_valid_dir
[9553]	1401	JOB_FILE=${EXE_DIR}/run_job.sh
	1402	NPROC=32
	1403	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1404	cd ${EXE_DIR}
	1405	set_namelist namelist_cfg cn_exp \"S12_LONG\"
	1406	set_namelist namelist_cfg nn_it000 1
[9744]	1407	set_namelist namelist_cfg nn_itend 240
	1408	set_namelist namelist_cfg nn_stock 120
	1409	set_namelist namelist_cfg nn_date0 20020101
[9553]	1410	set_namelist namelist_cfg jpni 4
	1411	set_namelist namelist_cfg jpnj 8
[10573]	1412	set_namelist namelist_cfg sn_cfctl%l_config .true.
	1413	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9744]	1414	#set_namelist namelist_ice_cfg ln_icediachk .true.
[9553]	1415	if [ ${USING_MPMD} == "yes" ] ; then
	1416	set_xio_using_server iodef.xml true
	1417	else
	1418	set_xio_using_server iodef.xml false
	1419	fi
	1420	cd ${SETTE_DIR}
[10755]	1421	. ./prepare_job.sh input_SPITZ12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1422
	1423	cd ${SETTE_DIR}
	1424	export TEST_NAME="SHORT"
	1425	. ./prepare_exe_dir.sh
[10755]	1426	set_valid_dir
[10698]	1427	clean_valid_dir
[9553]	1428	cd ${EXE_DIR}
	1429	set_namelist namelist_cfg cn_exp \"S12_SHORT\"
[9744]	1430	set_namelist namelist_cfg nn_it000 121
	1431	set_namelist namelist_cfg nn_itend 240
	1432	set_namelist namelist_cfg nn_stock 120
[9553]	1433	set_namelist namelist_cfg ln_rstart .true.
	1434	set_namelist namelist_cfg nn_rstctl 2
	1435	set_namelist namelist_cfg jpni 4
	1436	set_namelist namelist_cfg jpnj 8
[10573]	1437	set_namelist namelist_cfg sn_cfctl%l_config .true.
	1438	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9744]	1439	set_namelist namelist_cfg cn_ocerst_in \"S12_LONG_00000120_restart\"
	1440	set_namelist namelist_ice_cfg cn_icerst_in \"S12_LONG_00000120_restart_ice\"
[9553]	1441	for (( i=1; i<=$NPROC; i++)) ; do
	1442	L_NPROC=$(( $i - 1 ))
	1443	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[9744]	1444	ln -sf ../LONG/S12_LONG_00000120_restart_${L_NPROC}.nc .
	1445	ln -sf ../LONG/S12_LONG_00000120_restart_ice_${L_NPROC}.nc .
[9553]	1446	done
	1447	if [ ${USING_MPMD} == "yes" ] ; then
	1448	set_xio_using_server iodef.xml true
	1449	else
	1450	set_xio_using_server iodef.xml false
	1451	fi
	1452	cd ${SETTE_DIR}
[10755]	1453	. ./prepare_job.sh input_SPITZ12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1454	cd ${SETTE_DIR}
	1455	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1456
	1457	## Reproducibility tests
	1458	export TEST_NAME="REPRO_4_8"
[9658]	1459	cd ${MAIN_DIR}
[9553]	1460	cd ${SETTE_DIR}
	1461	. ./param.cfg
	1462	. ./all_functions.sh
	1463	. ./prepare_exe_dir.sh
[10755]	1464	set_valid_dir
[10698]	1465	clean_valid_dir
[9553]	1466	JOB_FILE=${EXE_DIR}/run_job.sh
	1467	NPROC=32
	1468	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1469	cd ${EXE_DIR}
	1470	set_namelist namelist_cfg cn_exp \"S12_48\"
	1471	set_namelist namelist_cfg nn_it000 1
[9744]	1472	set_namelist namelist_cfg nn_itend 120
	1473	set_namelist namelist_cfg nn_date0 20020101
[9553]	1474	set_namelist namelist_cfg jpni 4
	1475	set_namelist namelist_cfg jpnj 8
[10573]	1476	set_namelist namelist_cfg sn_cfctl%l_config .true.
	1477	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9553]	1478	if [ ${USING_MPMD} == "yes" ] ; then
	1479	set_xio_using_server iodef.xml true
	1480	else
	1481	set_xio_using_server iodef.xml false
	1482	fi
	1483	cd ${SETTE_DIR}
[10755]	1484	. ./prepare_job.sh input_SPITZ12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1485	cd ${SETTE_DIR}
	1486	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1487
	1488	cd ${SETTE_DIR}
	1489	export TEST_NAME="REPRO_8_4"
	1490	. ./prepare_exe_dir.sh
[10755]	1491	set_valid_dir
[10698]	1492	clean_valid_dir
[9553]	1493	JOB_FILE=${EXE_DIR}/run_job.sh
	1494	NPROC=32
	1495	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1496	cd ${EXE_DIR}
	1497	set_namelist namelist_cfg cn_exp \"S12_84\"
	1498	set_namelist namelist_cfg nn_it000 1
[9744]	1499	set_namelist namelist_cfg nn_itend 120
	1500	set_namelist namelist_cfg nn_date0 20020101
[9553]	1501	set_namelist namelist_cfg jpni 8
	1502	set_namelist namelist_cfg jpnj 4
[10573]	1503	set_namelist namelist_cfg sn_cfctl%l_config .true.
	1504	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9553]	1505	if [ ${USING_MPMD} == "yes" ] ; then
	1506	set_xio_using_server iodef.xml true
	1507	else
	1508	set_xio_using_server iodef.xml false
	1509	fi
	1510	cd ${SETTE_DIR}
[10755]	1511	. ./prepare_job.sh input_SPITZ12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1512	cd ${SETTE_DIR}
	1513	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1514	fi
	1515
	1516
[3520]	1517	done

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