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sette_reference-configurations.sh in utils/CI/sette_ticket2452 – NEMO

source: utils/CI/sette_ticket2452/sette_reference-configurations.sh @ 13900

Last change on this file since 13900 was 13160, checked in by gsamson, 4 years ago

merge sette@r12931 into ABL sette branch; add Belenos arch/batch files; all SETTE tests identical to trunk@r13136 except ORCA2_ICE_PISCES where ABL is activated; ticket #2452
  • Property svn:executable set to *
File size: 59.0 KB
RevLine 
[3520]1#!/bin/bash
[3708]2############################################################
[3520]3# Author : Simona Flavoni for NEMO
[4245]4# Contact: sflod@locean-ipsl.upmc.fr
5# 2013   : A.C. Coward added options for testing with XIOS in dettached mode
[3520]6#
7# sette.sh   : principal script of SET TEsts for NEMO (SETTE)
8# ----------------------------------------------------------------------
9# NEMO/SETTE , NEMO Consortium (2010)
10# Software governed by the CeCILL licence     (NEMOGCM/NEMO_CeCILL.txt)
11# ----------------------------------------------------------------------
12#
13#############################################################
[7744]14#set -vx
[3520]15set -o posix
16#set -u
17#set -e
[4245]18# ===========
[3520]19# DESCRIPTION
20# ===========
21#
22# Variables to be checked by user:
23#
[4245]24# COMPILER          : name of compiler as defined in NEMOGCM/ARCH directory
25# BATCH_COMMAND_PAR :  name of the command for submitting parallel batch jobs
26# BATCH_COMMAND_SEQ :  name of the command for submitting sequential batch jobs 
27# INTERACT_FLAG     : flag to run in interactive mode "yes"
28#                           to run in batch mode "no"
29# MPIRUN_FLAG       : flag to run in parallel (MPI) "yes"
30#                           to run in sequential mode (NB_PROC = 1) "no"
31# USING_XIOS        : flag to control the activation of key_iomput
32#                      "yes" to compile using key_iomput and link to the external XIOS library
33#                      "no"  to compile without key_iomput and link to the old IOIPSL library
34# USING_MPMD        : flag to control the use of stand-alone IO servers
35#                     requires USING_XIOS="yes"
36#                      "yes" to run in MPMD (detached) mode with stand-alone IO servers
37#                      "no"  to run in SPMD (attached) mode without separate IO servers
38# NUM_XIOSERVERS    : number of stand-alone IO servers to employ
39#                     set to zero if USING_MPMD="no"
[3520]40#
41# Principal script is sette.sh, that calls
42#
[4245]43#  makenemo  : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe
[9576]44#              and links to nemo in ${CONFIG_NAME}/EXP00)
[3520]45#
46#  param.cfg : sets and loads following directories:
47#
[4245]48#   FORCING_DIR         : is the directory for forcing files (tarfile)
49#   INPUT_DIR           : is the directory for input files storing
50#   TMPDIR              : is the temporary directory (if needed)
[3520]51#   NEMO_VALIDATION_DIR : is the validation directory
52#
53#   (NOTE: this file is the same for all configrations to be tested with sette)
54#
[4245]55#   all_functions.sh : loads functions used by sette (note: new functions can be added here)
56#   set_namelist     : function declared in all_functions that sets namelist parameters
57#   post_test_tidyup : creates validation storage directory and copies required output files
[9019]58#                      (run.stat and ocean.output) in it after execution of test.
[3520]59#
[4245]60#  VALIDATION tree is:
[3520]61#
62#   NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
63#
64#  prepare_exe_dir.sh : defines and creates directory where the test is executed
[4245]65#                       execution directory takes name of TEST_NAME defined for every test
66#                       in sette.sh. (each test in executed in its own directory)
[3520]67#
[10755]68#  set_valid_dir       : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
69#
[10698]70#  clean_valid_dir    : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
71#                       ( not doing it could lead to false positive )
72#
[4245]73#  prepare_job.sh     : to generate the script run_job.sh
[3520]74#
[4245]75#  fcm_job.sh         : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
76#                        see sette.sh and BATCH_TEMPLATE directory
[3520]77#
[4245]78#  NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which
79#        can be found paths to the input tar file)
80#  NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR}
81#        directory
82#  NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists
83#        remain in ${NEW_CONF}/EXP00
[3520]84#
[4245]85#  NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of
86#        executed commands
[3520]87#
[4245]88#  NOTE: if sette.sh is stopped in output.sette there is written the last command
89#        executed by sette.sh
[3520]90#
[4245]91# example use: ./sette.sh
92#########################################################################################
[3520]93#
[10687]94# LOAD param value
[10717]95SETTE_DIR=$(cd $(dirname "$0"); pwd)
96MAIN_DIR=$(dirname $SETTE_DIR)
[10687]97. ./param.cfg
[7743]98
[10687]99export BATCH_COMMAND_PAR=${BATCH_CMD}
100export BATCH_COMMAND_SEQ=${BATCH_CMD}
[4990]101export INTERACT_FLAG="no"
[4245]102export MPIRUN_FLAG="yes"
[9941]103export USING_ICEBERGS="yes"
[3520]104#
[4245]105export DEL_KEYS="key_iomput"
106if [ ${USING_XIOS} == "yes" ] 
107 then
108   export DEL_KEYS=""
109fi
[3520]110#
[10687]111export ADD_KEYS=""
112if [ ${ADD_NOSIGNEDZERO} == "yes" ]
113 then
114   export ADD_KEYS="key_nosignedzero"
115fi
116#
[4245]117# Settings which control the use of stand alone servers (only relevant if using xios)
[3520]118#
[10632]119export NUM_XIOSERVERS=4
[11140]120export JOB_PREFIX=${JOB_PREFIX_MPMD}
[3520]121#
[4245]122if [ ${USING_MPMD} == "no" ] 
123 then
124   export NUM_XIOSERVERS=0
[11140]125   export JOB_PREFIX=${JOB_PREFIX_NOMPMD}
[4245]126fi
[3520]127#
128#
[10573]129if [ ${USING_MPMD} == "yes" ] && [ ${USING_XIOS} == "no" ]
[4245]130 then
131   echo "Incompatible choices. MPMD mode requires the XIOS server"
132   exit
133fi
[3520]134
135# Directory to run the tests
[9602]136CONFIG_DIR0=${MAIN_DIR}/cfgs
137TOOLS_DIR=${MAIN_DIR}/tools
[3520]138
139CMP_NAM=${1:-$COMPILER}
140# Copy job_batch_COMPILER file for specific compiler into job_batch_template
141cd ${SETTE_DIR}
[4245]142cp BATCH_TEMPLATE/${JOB_PREFIX}-${COMPILER} job_batch_template || exit
[10747]143# Description of available configurations:
144# GYRE_PISCES       :
145# ORCA2_ICE_PISCES  :
146# ORCA2_OFF_PISCES  :
147# AMM12             :
148# SAS               :
149# ORCA2_ICE_OBS     :
150# AGRIF             : test AGRIF in a double zoom configuration in the nordic seas + 1 zoom in the eq. Pacific (AGRIF_DEMO)
151#                       and check that key_agrif without zoom = no key_agrif
152# SPITZ12           : regional configuration including sea-ice and tides (Spitzbergen)
[4147]153
[10747]154for config in ${TEST_CONFIGS}
[3520]155do
156
[9518]157# -----------
158# GYRE_PISCES
159# -----------
[10747]160if [ ${config} == "GYRE_PISCES" ] ;  then
[9518]161## Restartability tests for GYRE_PISCES
[3520]162    export TEST_NAME="LONG"
[9658]163    cd ${MAIN_DIR}
[12569]164    #
165    # syncronisation if target directory/file exist (not done by makenemo)
166    . ${SETTE_DIR}/all_functions.sh
167    sync_config  GYRE_PISCES GYRE_PISCES_ST 'cfgs'
168    clean_config GYRE_PISCES GYRE_PISCES_ST 'cfgs'
169    #
[11497]170    . ./makenemo -m ${CMP_NAM} -n GYRE_PISCES_ST -r GYRE_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]171    cd ${SETTE_DIR}
[4252]172    . ./param.cfg
173    . ./all_functions.sh
174    . ./prepare_exe_dir.sh
[10755]175    set_valid_dir
[10698]176    clean_valid_dir
[3520]177    JOB_FILE=${EXE_DIR}/run_job.sh
[9525]178    NPROC=8
[4245]179    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[4147]180    cd ${EXE_DIR} 
[7715]181    set_namelist namelist_cfg cn_exp \"GYREPIS_LONG\"
[4147]182    set_namelist namelist_cfg nn_it000 1
[9560]183    set_namelist namelist_cfg nn_itend 1080
184    set_namelist namelist_cfg nn_stock  540
[7646]185    set_namelist namelist_cfg ln_linssh .true.
[9525]186    set_namelist namelist_cfg jpni 2
187    set_namelist namelist_cfg jpnj 4
[10573]188    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
189    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[4245]190    if [ ${USING_MPMD} == "yes" ] ; then
191       set_xio_using_server iodef.xml true
192    else
193       set_xio_using_server iodef.xml false
194    fi
195    cd ${SETTE_DIR}
[10755]196    . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]197
198    cd ${SETTE_DIR}
199    export TEST_NAME="SHORT"
[4252]200    . ./prepare_exe_dir.sh
[10755]201    set_valid_dir
[10698]202    clean_valid_dir
[3520]203    cd ${EXE_DIR}
[7715]204    set_namelist namelist_cfg cn_exp \"GYREPIS_SHORT\"
[9560]205    set_namelist namelist_cfg nn_it000 541
206    set_namelist namelist_cfg nn_itend 1080
207    set_namelist namelist_cfg nn_stock 540
[4147]208    set_namelist namelist_cfg ln_rstart .true.
209    set_namelist namelist_cfg nn_rstctl 2
[7646]210    set_namelist namelist_cfg ln_linssh .true.
[9525]211    set_namelist namelist_cfg jpni 2
212    set_namelist namelist_cfg jpnj 4
[10573]213    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
214    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[7744]215    set_namelist namelist_top_cfg ln_rsttr .true.
216    set_namelist namelist_top_cfg nn_rsttr 2
[9560]217    set_namelist namelist_cfg cn_ocerst_in \"GYREPIS_LONG_00000540_restart\"
218    set_namelist namelist_top_cfg cn_trcrst_in \"GYREPIS_LONG_00000540_restart_trc\"
[4245]219    if [ ${USING_MPMD} == "yes" ] ; then
220       set_xio_using_server iodef.xml true
221    else
222       set_xio_using_server iodef.xml false
223    fi
[3537]224    for (( i=1; i<=$NPROC; i++)) ; do
225        L_NPROC=$(( $i - 1 ))
226        L_NPROC=`printf "%04d\n" ${L_NPROC}`
[9560]227        ln -sf ../LONG/GYREPIS_LONG_00000540_restart_${L_NPROC}.nc .
228        ln -sf ../LONG/GYREPIS_LONG_00000540_restart_trc_${L_NPROC}.nc .
[3537]229    done
[3520]230    cd ${SETTE_DIR}
[10755]231    . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]232    cd ${SETTE_DIR}
[3532]233    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]234
[9518]235## Reproducibility tests for GYRE_PISCES
[9525]236    export TEST_NAME="REPRO_2_4"
[9658]237    cd ${MAIN_DIR}
[3520]238    cd ${SETTE_DIR}
[4252]239    . ./param.cfg
240    . ./all_functions.sh
241    . ./prepare_exe_dir.sh
[10755]242    set_valid_dir
[10698]243    clean_valid_dir
[3520]244    JOB_FILE=${EXE_DIR}/run_job.sh
[9525]245    NPROC=8
[4245]246    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]247    cd ${EXE_DIR}
[7715]248    set_namelist namelist_cfg cn_exp \"GYREPIS_48\"
[4147]249    set_namelist namelist_cfg nn_it000 1
[9560]250    set_namelist namelist_cfg nn_itend 1080
[7646]251    set_namelist namelist_cfg ln_linssh .true.
[9525]252    set_namelist namelist_cfg jpni 2
253    set_namelist namelist_cfg jpnj 4
[10573]254    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
255    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[4245]256    if [ ${USING_MPMD} == "yes" ] ; then
257       set_xio_using_server iodef.xml true
258    else
259       set_xio_using_server iodef.xml false
260    fi
[3520]261    cd ${SETTE_DIR}
[10755]262    . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]263    cd ${SETTE_DIR}
264    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
265
266    cd ${SETTE_DIR}
[9525]267    export TEST_NAME="REPRO_4_2"
[4252]268    . ./prepare_exe_dir.sh
[10755]269    set_valid_dir
[10698]270    clean_valid_dir
[3680]271    JOB_FILE=${EXE_DIR}/run_job.sh
[9525]272    NPROC=8
[4245]273    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]274    cd ${EXE_DIR}
[7715]275    set_namelist namelist_cfg cn_exp \"GYREPIS_84\"
[4147]276    set_namelist namelist_cfg nn_it000 1
[9560]277    set_namelist namelist_cfg nn_itend 1080
[7646]278    set_namelist namelist_cfg ln_linssh .true.
[9525]279    set_namelist namelist_cfg jpni 4
280    set_namelist namelist_cfg jpnj 2
[10573]281    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
282    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[4245]283    if [ ${USING_MPMD} == "yes" ] ; then
284       set_xio_using_server iodef.xml true
285    else
286       set_xio_using_server iodef.xml false
287    fi
[3520]288    cd ${SETTE_DIR}
[10755]289    . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]290    cd ${SETTE_DIR}
291    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3532]292
[3520]293fi
294
[9518]295# -----------------
[9663]296# ORCA2_ICE_PISCES
[9518]297# -----------------
[10747]298if [ ${config} == "ORCA2_ICE_PISCES" ] ;  then
[9663]299## Restartability tests for ORCA2_ICE_PISCES
[7646]300    export TEST_NAME="LONG"
[9658]301    cd ${MAIN_DIR}
[12569]302    #
303    # syncronisation if target directory/file exist (not done by makenemo)
304    . ${SETTE_DIR}/all_functions.sh
305    sync_config  ORCA2_ICE_PISCES ORCA2_ICE_PISCES_ST 'cfgs'
306    clean_config ORCA2_ICE_PISCES ORCA2_ICE_PISCES_ST 'cfgs'
307    #
[11497]308    . ./makenemo -m ${CMP_NAM} -n ORCA2_ICE_PISCES_ST -r ORCA2_ICE_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[7646]309    cd ${SETTE_DIR}
310    . ./param.cfg
311    . ./all_functions.sh
312    . ./prepare_exe_dir.sh
[10755]313    set_valid_dir
[10698]314    clean_valid_dir
[7646]315    JOB_FILE=${EXE_DIR}/run_job.sh
316    NPROC=32
[13160]317    ITEND=992
[7646]318    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
319    cd ${EXE_DIR}
320    set_namelist namelist_cfg cn_exp \"O2L3P_LONG\"
321    set_namelist namelist_cfg nn_it000 1
[13160]322    set_namelist namelist_cfg nn_itend ${ITEND}
323    set_namelist namelist_cfg nn_stock $((ITEND/2))
[7646]324    set_namelist namelist_cfg jpni 4
325    set_namelist namelist_cfg jpnj 8
[10573]326    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
327    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9933]328    set_namelist namelist_cfg ln_use_calving .true.
[12818]329    set_namelist namelist_cfg nn_date0 20130101
330    set_namelist namelist_cfg ln_blk  .false.
331    set_namelist namelist_cfg ln_abl  .true.
332    set_namelist namelist_cfg sn_wndi " 'uwnd_ERAI_L25Z10_ORCA2_ana1d', 24., 'uwnd', .false., .false., 'monthly', '', 'U10', '' "
333    set_namelist namelist_cfg sn_wndj " 'vwnd_ERAI_L25Z10_ORCA2_ana1d', 24., 'vwnd', .false., .false., 'monthly', '', 'V10', '' "
334    set_namelist namelist_cfg sn_tair " 'tair_ERAI_L25Z10_ORCA2_ana1d', 24., 'tair', .false., .false., 'monthly', '', '', '' "
335    set_namelist namelist_cfg sn_humi " 'humi_ERAI_L25Z10_ORCA2_ana1d', 24., 'humi', .false., .false., 'monthly', '', '', '' "
[10189]336    set_namelist namelist_cfg ln_wave .true.
337    set_namelist namelist_cfg ln_cdgw .true.
338    set_namelist namelist_cfg ln_sdw  .true.
339    set_namelist namelist_cfg nn_sdrift 1
340    set_namelist namelist_cfg ln_stcor .true.
341    set_namelist namelist_cfg ln_tauwoc .true.
[9904]342    #
343    if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10687]344    # for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[9904]345    #
[9019]346    set_namelist namelist_ice_cfg ln_icediachk .true.
[4147]347    set_namelist namelist_top_cfg ln_trcdta .false.
[12428]348    set_namelist namelist_top_cfg ln_trcbc  .false.
349    # put ln_ironsed, ln_hydrofe to false
[3520]350    # if not you need input files, and for tests is not necessary
[4147]351    set_namelist namelist_pisces_cfg ln_varpar .false.
352    set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]353    set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]354    set_namelist namelist_pisces_cfg ln_hydrofe .false.
[9203]355    # put ln_pisdmp to false : no restoring to global mean value
356    set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]357    if [ ${USING_MPMD} == "yes" ] ; then
358       set_xio_using_server iodef.xml true
359    else
360       set_xio_using_server iodef.xml false
361    fi
[3520]362    cd ${SETTE_DIR}
[10755]363    . ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3532]364   
365    cd ${SETTE_DIR}
[3520]366    export TEST_NAME="SHORT"
[4252]367    . ./prepare_exe_dir.sh
[10755]368    set_valid_dir
[10698]369    clean_valid_dir
[3520]370    cd ${EXE_DIR}
[7646]371    set_namelist namelist_cfg cn_exp \"O2L3P_SHORT\"
[13160]372    set_namelist namelist_cfg nn_it000 $((ITEND/2+1))
373    set_namelist namelist_cfg nn_itend ${ITEND}
374    set_namelist namelist_cfg nn_stock $((ITEND/2))
[4147]375    set_namelist namelist_cfg ln_rstart .true.
376    set_namelist namelist_cfg nn_rstctl 2
[7646]377    set_namelist namelist_cfg jpni 4
378    set_namelist namelist_cfg jpnj 8
[10573]379    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
380    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9920]381    set_namelist namelist_cfg nn_test_icebergs -1
[12818]382    set_namelist namelist_cfg nn_date0 20130101
383    set_namelist namelist_cfg ln_blk  .false.
384    set_namelist namelist_cfg ln_abl  .true.
385    set_namelist namelist_cfg ln_rstart_abl .true.
386    set_namelist namelist_cfg sn_wndi " 'uwnd_ERAI_L25Z10_ORCA2_ana1d', 24., 'uwnd', .false., .false., 'monthly', '', 'U10', '' "
387    set_namelist namelist_cfg sn_wndj " 'vwnd_ERAI_L25Z10_ORCA2_ana1d', 24., 'vwnd', .false., .false., 'monthly', '', 'V10', '' "
388    set_namelist namelist_cfg sn_tair " 'tair_ERAI_L25Z10_ORCA2_ana1d', 24., 'tair', .false., .false., 'monthly', '', '', '' "
389    set_namelist namelist_cfg sn_humi " 'humi_ERAI_L25Z10_ORCA2_ana1d', 24., 'humi', .false., .false., 'monthly', '', '', '' "
[10189]390    set_namelist namelist_cfg ln_wave .true.
391    set_namelist namelist_cfg ln_cdgw .true.
392    set_namelist namelist_cfg ln_sdw  .true.
393    set_namelist namelist_cfg nn_sdrift 1
394    set_namelist namelist_cfg ln_stcor .true.
395    set_namelist namelist_cfg ln_tauwoc .true.
[9904]396    #
397    if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10732]398    # for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[9904]399    #
[9933]400    set_namelist namelist_ice_cfg ln_icediachk .true.
[4147]401    set_namelist namelist_top_cfg ln_rsttr .true.
402    set_namelist namelist_top_cfg nn_rsttr 2
[13160]403    set_namelist namelist_cfg cn_ocerst_in \"O2L3P_LONG_$(printf "%08d" $((ITEND/2)))_restart\"
404    set_namelist namelist_cfg cn_icbrst_in \"O2L3P_LONG_$(printf "%08d" $((ITEND/2)))_restart_icb\"
405    set_namelist namelist_cfg cn_ablrst_in \"O2L3P_LONG_$(printf "%08d" $((ITEND/2)))_restart_abl\"
406    set_namelist namelist_top_cfg cn_trcrst_in \"O2L3P_LONG_$(printf "%08d" $((ITEND/2)))_restart_trc\"
407    set_namelist namelist_ice_cfg cn_icerst_in \"O2L3P_LONG_$(printf "%08d" $((ITEND/2)))_restart_ice\"
[12428]408    set_namelist namelist_top_cfg ln_trcbc  .false.
409    # put ln_ironsed, ln_hydrofe to false
[3520]410    # if not you need input files, and for tests is not necessary
[4147]411    set_namelist namelist_pisces_cfg ln_varpar .false.
412    set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]413    set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]414    set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]415    # put ln_pisdmp to false : no restoring to global mean value
[4147]416    set_namelist namelist_pisces_cfg ln_pisdmp .false.
[3537]417    for (( i=1; i<=$NPROC; i++)) ; do
418        L_NPROC=$(( $i - 1 ))
419        L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13160]420        ln -sf ../LONG/O2L3P_LONG_$(printf "%08d" $((ITEND/2)))_restart_${L_NPROC}.nc .
421        ln -sf ../LONG/O2L3P_LONG_$(printf "%08d" $((ITEND/2)))_restart_trc_${L_NPROC}.nc .
422        ln -sf ../LONG/O2L3P_LONG_$(printf "%08d" $((ITEND/2)))_restart_ice_${L_NPROC}.nc .
423        ln -sf ../LONG/O2L3P_LONG_$(printf "%08d" $((ITEND/2)))_restart_abl_${L_NPROC}.nc .
[9904]424        if [ ${USING_ICEBERGS} == "yes" ]
425            then
[13160]426             ln -sf ../LONG/O2L3P_LONG_$(printf "%08d" $((ITEND/2)))_restart_icb_${L_NPROC}.nc O2L3P_LONG_$(printf "%08d" $((ITEND/2)))_restart_icb_${L_NPROC}.nc
[9904]427        fi
[3537]428    done
[4245]429    if [ ${USING_MPMD} == "yes" ] ; then
430       set_xio_using_server iodef.xml true
431    else
432       set_xio_using_server iodef.xml false
433    fi
[3520]434    cd ${SETTE_DIR}
[10755]435    . ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]436    cd ${SETTE_DIR}
[3532]437    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]438
[9663]439## Reproducibility tests for ORCA2_ICE_PISCES
[7646]440    export TEST_NAME="REPRO_4_8"
[9658]441    cd ${MAIN_DIR}
[3520]442    cd ${SETTE_DIR}
[4252]443    . ./param.cfg
444    . ./all_functions.sh
445    . ./prepare_exe_dir.sh
[10755]446    set_valid_dir
[10698]447    clean_valid_dir
[3520]448    JOB_FILE=${EXE_DIR}/run_job.sh
[7646]449    NPROC=32
[4245]450    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]451    cd ${EXE_DIR}
[9019]452    set_namelist namelist_cfg cn_exp \"O2L3P_48\"
[4147]453    set_namelist namelist_cfg nn_it000 1
[10750]454    set_namelist namelist_cfg nn_itend 992
[4147]455    set_namelist namelist_cfg jpni 4
[7646]456    set_namelist namelist_cfg jpnj 8
[10573]457    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
458    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[12818]459    set_namelist namelist_cfg nn_date0 20130101
460    set_namelist namelist_cfg ln_blk  .false.
461    set_namelist namelist_cfg ln_abl  .true.
462    set_namelist namelist_cfg sn_wndi " 'uwnd_ERAI_L25Z10_ORCA2_ana1d', 24., 'uwnd', .false., .false., 'monthly', '', 'U10', '' "
463    set_namelist namelist_cfg sn_wndj " 'vwnd_ERAI_L25Z10_ORCA2_ana1d', 24., 'vwnd', .false., .false., 'monthly', '', 'V10', '' "
464    set_namelist namelist_cfg sn_tair " 'tair_ERAI_L25Z10_ORCA2_ana1d', 24., 'tair', .false., .false., 'monthly', '', '', '' "
465    set_namelist namelist_cfg sn_humi " 'humi_ERAI_L25Z10_ORCA2_ana1d', 24., 'humi', .false., .false., 'monthly', '', '', '' "
[10189]466    set_namelist namelist_cfg ln_wave .true.
467    set_namelist namelist_cfg ln_cdgw .true.
468    set_namelist namelist_cfg ln_sdw  .true.
469    set_namelist namelist_cfg nn_sdrift 1
470    set_namelist namelist_cfg ln_stcor .true.
471    set_namelist namelist_cfg ln_tauwoc .true.
[13160]472    #
[9904]473    if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10687]474    # for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[13160]475    #
[4147]476    set_namelist namelist_top_cfg ln_trcdta .false.
[12428]477    set_namelist namelist_top_cfg ln_trcbc  .false.
478    # put ln_ironsed, ln_hydrofe to false
[3520]479    # if not you need input files, and for tests is not necessary
[4147]480    set_namelist namelist_pisces_cfg ln_varpar .false.
481    set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]482    set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]483    set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]484    # put ln_pisdmp to false : no restoring to global mean value
[4147]485    set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]486    if [ ${USING_MPMD} == "yes" ] ; then
487       set_xio_using_server iodef.xml true
488    else
489       set_xio_using_server iodef.xml false
490    fi
[3520]491    cd ${SETTE_DIR}
[10755]492    . ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]493    cd ${SETTE_DIR}
[3532]494    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]495
496    cd ${SETTE_DIR}
[7646]497    export TEST_NAME="REPRO_8_4"
[4252]498    . ./prepare_exe_dir.sh
[10755]499    set_valid_dir
[10698]500    clean_valid_dir
[3680]501    JOB_FILE=${EXE_DIR}/run_job.sh
[7646]502    NPROC=32
[4245]503    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]504    cd ${EXE_DIR}
[9019]505    set_namelist namelist_cfg cn_exp \"O2L3P_84\"
[4147]506    set_namelist namelist_cfg nn_it000 1
[10750]507    set_namelist namelist_cfg nn_itend 992
[7646]508    set_namelist namelist_cfg jpni 8
509    set_namelist namelist_cfg jpnj 4
[10573]510    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
511    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[12818]512    set_namelist namelist_cfg nn_date0 20130101
513    set_namelist namelist_cfg ln_blk  .false.
514    set_namelist namelist_cfg ln_abl  .true.
515    set_namelist namelist_cfg sn_wndi " 'uwnd_ERAI_L25Z10_ORCA2_ana1d', 24., 'uwnd', .false., .false., 'monthly', '', 'U10', '' "
516    set_namelist namelist_cfg sn_wndj " 'vwnd_ERAI_L25Z10_ORCA2_ana1d', 24., 'vwnd', .false., .false., 'monthly', '', 'V10', '' "
517    set_namelist namelist_cfg sn_tair " 'tair_ERAI_L25Z10_ORCA2_ana1d', 24., 'tair', .false., .false., 'monthly', '', '', '' "
518    set_namelist namelist_cfg sn_humi " 'humi_ERAI_L25Z10_ORCA2_ana1d', 24., 'humi', .false., .false., 'monthly', '', '', '' "
[10189]519    set_namelist namelist_cfg ln_wave .true.
520    set_namelist namelist_cfg ln_cdgw .true.
521    set_namelist namelist_cfg ln_sdw  .true.
522    set_namelist namelist_cfg nn_sdrift 1
523    set_namelist namelist_cfg ln_stcor .true.
524    set_namelist namelist_cfg ln_tauwoc .true.
[10687]525
[9904]526    if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10687]527    # for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
528
[4147]529    set_namelist namelist_top_cfg ln_trcdta .false.
[12428]530    set_namelist namelist_top_cfg ln_trcbc  .false.
531    # put ln_ironsed, ln_hydrofe to false
[3520]532    # if not you need input files, and for tests is not necessary
[4147]533    set_namelist namelist_pisces_cfg ln_varpar .false.
534    set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]535    set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]536    set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]537    # put ln_pisdmp to false : no restoring to global mean value
[4147]538    set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]539    if [ ${USING_MPMD} == "yes" ] ; then
540       set_xio_using_server iodef.xml true
541    else
542       set_xio_using_server iodef.xml false
543    fi
[3520]544    cd ${SETTE_DIR}
[10755]545    . ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]546    cd ${SETTE_DIR}
547    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
548fi
549
[9518]550# ----------------
551# ORCA2_OFF_PISCES
552# ----------------
[10747]553if [ ${config} == "ORCA2_OFF_PISCES" ] ;  then
[9518]554## Restartability tests for ORCA2_OFF_PISCES
[3520]555    export TEST_NAME="LONG"
[9658]556    cd ${MAIN_DIR}
[12569]557    #
558    # syncronisation if target directory/file exist (not done by makenemo)
559    . ${SETTE_DIR}/all_functions.sh
560    sync_config  ORCA2_OFF_PISCES ORCA2_OFF_PISCES_ST 'cfgs'
561    clean_config ORCA2_OFF_PISCES ORCA2_OFF_PISCES_ST 'cfgs'
562    #
[11497]563    . ./makenemo -m ${CMP_NAM} -n ORCA2_OFF_PISCES_ST -r ORCA2_OFF_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]564    cd ${SETTE_DIR}
[4252]565    . ./param.cfg
566    . ./all_functions.sh
567    . ./prepare_exe_dir.sh
[10755]568    set_valid_dir
[10698]569    clean_valid_dir
[3520]570    JOB_FILE=${EXE_DIR}/run_job.sh
[7646]571    NPROC=32
[4245]572    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]573    cd ${EXE_DIR}
[4147]574    set_namelist namelist_cfg cn_exp \"OFFP_LONG\"
575    set_namelist namelist_cfg nn_it000 1
[9560]576    set_namelist namelist_cfg nn_itend 380
577    set_namelist namelist_cfg nn_stock 190
[7646]578    set_namelist namelist_cfg jpni 4
579    set_namelist namelist_cfg jpnj 8
[10573]580    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
581    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]582    set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]583    set_namelist namelist_top_cfg ln_trcdta .false.
[12428]584    set_namelist namelist_top_cfg ln_trcbc  .false.
585    # put ln_ironsed, ln_hydrofe to false
[3520]586    # if not you need input files, and for tests is not necessary
[4147]587    set_namelist namelist_pisces_cfg ln_varpar .false.
588    set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]589    set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]590    set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]591    # put ln_pisdmp to false : no restoring to global mean value
[4147]592    set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]593    if [ ${USING_MPMD} == "yes" ] ; then
594       set_xio_using_server iodef.xml true
595    else
596       set_xio_using_server iodef.xml false
597    fi
[3520]598    cd ${SETTE_DIR}
[10755]599    . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]600   
601    cd ${SETTE_DIR}
602    export TEST_NAME="SHORT"
[4252]603    . ./prepare_exe_dir.sh
[10755]604    set_valid_dir
[10698]605    clean_valid_dir
[3520]606    cd ${EXE_DIR}
[4147]607    set_namelist namelist_cfg cn_exp \"OFFP_SHORT\"
[9560]608    set_namelist namelist_cfg nn_it000 191
609    set_namelist namelist_cfg nn_itend 380
610    set_namelist namelist_cfg nn_stock 190
[7646]611    set_namelist namelist_cfg jpni 4
612    set_namelist namelist_cfg jpnj 8
[10573]613    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
614    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]615    set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]616    set_namelist namelist_top_cfg ln_rsttr .true.
617    set_namelist namelist_top_cfg nn_rsttr 2
[9560]618    set_namelist namelist_top_cfg cn_trcrst_in \"OFFP_LONG_00000190_restart_trc\"
[3537]619    for (( i=1; i<=$NPROC; i++)) ; do
620        L_NPROC=$(( $i - 1 ))
621        L_NPROC=`printf "%04d\n" ${L_NPROC}`
[9560]622        ln -sf ../LONG/OFFP_LONG_00000190_restart_trc_${L_NPROC}.nc .
[3537]623    done
[12428]624    set_namelist namelist_top_cfg ln_trcbc  .false.
625    # put ln_ironsed, ln_hydrofe to false
[3520]626    # if not you need input files, and for tests is not necessary
[4147]627    set_namelist namelist_pisces_cfg ln_varpar .false.
628    set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]629    set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]630    set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]631    # put ln_pisdmp to false : no restoring to global mean value
[4147]632    set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]633    if [ ${USING_MPMD} == "yes" ] ; then
634       set_xio_using_server iodef.xml true
635    else
636       set_xio_using_server iodef.xml false
637    fi
[3520]638    cd ${SETTE_DIR}
[10755]639    . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME}  ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]640    cd ${SETTE_DIR}
641    . ./fcm_job.sh $NPROC  ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
642
[9518]643## Reproducibility tests for ORCA2_OFF_PISCES
[7646]644    export TEST_NAME="REPRO_4_8"
[9658]645    cd ${MAIN_DIR}
[3520]646    cd ${SETTE_DIR}
[4252]647    . ./param.cfg
648    . ./all_functions.sh
649    . ./prepare_exe_dir.sh
[10755]650    set_valid_dir
[10698]651    clean_valid_dir
[3520]652    JOB_FILE=${EXE_DIR}/run_job.sh
[7646]653    NPROC=32
[4245]654    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]655    cd ${EXE_DIR}
[9019]656    set_namelist namelist_cfg cn_exp \"OFFP_48\"
[4147]657    set_namelist namelist_cfg nn_it000 1
[9560]658    set_namelist namelist_cfg nn_itend 380
[4147]659    set_namelist namelist_cfg jpni 4
[7646]660    set_namelist namelist_cfg jpnj 8
[10573]661    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
662    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]663    set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]664    set_namelist namelist_top_cfg ln_trcdta .false.
[12428]665    set_namelist namelist_top_cfg ln_trcbc  .false.
666    # put ln_ironsed, ln_hydrofe to false
[3520]667    # if not you need input files, and for tests is not necessary
[4147]668    set_namelist namelist_pisces_cfg ln_varpar .false.
669    set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]670    set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]671    set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]672    # put ln_pisdmp to false : no restoring to global mean value
[4147]673    set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]674    if [ ${USING_MPMD} == "yes" ] ; then
675       set_xio_using_server iodef.xml true
676    else
677       set_xio_using_server iodef.xml false
678    fi
[3520]679    cd ${SETTE_DIR}
[10755]680    . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]681    cd ${SETTE_DIR}
[3532]682    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]683
684    cd ${SETTE_DIR}
[7646]685    export TEST_NAME="REPRO_8_4"
[4252]686    . ./prepare_exe_dir.sh
[10755]687    set_valid_dir
[10698]688    clean_valid_dir
[3680]689    JOB_FILE=${EXE_DIR}/run_job.sh
[7646]690    NPROC=32
[4245]691    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]692    cd ${EXE_DIR}
[9019]693    set_namelist namelist_cfg cn_exp \"OFFP_84\"
[4147]694    set_namelist namelist_cfg nn_it000 1
[9560]695    set_namelist namelist_cfg nn_itend 380
[7646]696    set_namelist namelist_cfg jpni 8
697    set_namelist namelist_cfg jpnj 4
[10573]698    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
699    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]700    set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]701    set_namelist namelist_top_cfg ln_trcdta .false.
[12428]702    set_namelist namelist_top_cfg ln_trcbc  .false.
703    # put ln_ironsed, ln_hydrofe to false
[3520]704    # if not you need input files, and for tests is not necessary
[4147]705    set_namelist namelist_pisces_cfg ln_varpar .false.
706    set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]707    set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]708    set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]709    # put ln_pisdmp to false : no restoring to global mean value
[4147]710    set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]711    if [ ${USING_MPMD} == "yes" ] ; then
712       set_xio_using_server iodef.xml true
713    else
714       set_xio_using_server iodef.xml false
715    fi
[3520]716    cd ${SETTE_DIR}
[10755]717    . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]718    cd ${SETTE_DIR}
719    . ./fcm_job.sh $NPROC  ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
720fi
721
[9518]722# -----
723# AMM12
724# -----
[10747]725if [ ${config} == "AMM12" ] ;  then
[3532]726    ## Restartability tests for AMM12
727    export TEST_NAME="LONG"
[9658]728    cd ${MAIN_DIR}
[12569]729    #
730    # syncronisation if target directory/file exist (not done by makenemo)
731    . ${SETTE_DIR}/all_functions.sh
732    sync_config  AMM12 AMM12_ST 'cfgs'
733    clean_config AMM12 AMM12_ST 'cfgs'
734    #
[11497]735    . ./makenemo -m ${CMP_NAM} -n AMM12_ST -r AMM12 -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]736    cd ${SETTE_DIR}
[4252]737    . ./param.cfg
738    . ./all_functions.sh
739    . ./prepare_exe_dir.sh
[10755]740    set_valid_dir
[10698]741    clean_valid_dir
[3520]742    JOB_FILE=${EXE_DIR}/run_job.sh
743    NPROC=32
[4245]744    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]745    cd ${EXE_DIR}
[9019]746    set_namelist namelist_cfg cn_exp \"AMM12_LONG\"
[4147]747    set_namelist namelist_cfg nn_it000 1
[4252]748    set_namelist namelist_cfg nn_itend 576
749    set_namelist namelist_cfg nn_stock 288
[7646]750    set_namelist namelist_cfg jpni 4
751    set_namelist namelist_cfg jpnj 8
[10573]752    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4245]753    if [ ${USING_MPMD} == "yes" ] ; then
754       set_xio_using_server iodef.xml true
755    else
756       set_xio_using_server iodef.xml false
757    fi
[3520]758    cd ${SETTE_DIR}
[10755]759    . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]760
761    cd ${SETTE_DIR}
[3532]762    export TEST_NAME="SHORT"
[4379]763    . ./prepare_exe_dir.sh
[10755]764    set_valid_dir
[10698]765    clean_valid_dir
[3520]766    cd ${EXE_DIR}
[9019]767    set_namelist namelist_cfg cn_exp \"AMM12_SHORT\"
[4252]768    set_namelist namelist_cfg nn_it000 289
769    set_namelist namelist_cfg nn_itend 576
[7646]770    set_namelist namelist_cfg jpni 4
771    set_namelist namelist_cfg jpnj 8
[10573]772    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4147]773    set_namelist namelist_cfg ln_rstart .true.
774    set_namelist namelist_cfg nn_rstctl 2
[9019]775    set_namelist namelist_cfg cn_ocerst_in \"AMM12_LONG_00000288_restart\"
[4252]776    set_namelist namelist_cfg nn_date0 20120102
[3537]777    for (( i=1; i<=$NPROC; i++)) ; do
778        L_NPROC=$(( $i - 1 ))
779        L_NPROC=`printf "%04d\n" ${L_NPROC}`
[9019]780        ln -sf ../LONG/AMM12_LONG_00000288_restart_${L_NPROC}.nc .
[3537]781    done
[4245]782    if [ ${USING_MPMD} == "yes" ] ; then
783       set_xio_using_server iodef.xml true
784    else
785       set_xio_using_server iodef.xml false
786    fi
[3520]787    cd ${SETTE_DIR}
[10755]788    . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]789    cd ${SETTE_DIR}
[3532]790    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]791
[3680]792## Reproducibility tests for AMM12
793    export TEST_NAME="REPRO_8_4"
[9658]794    cd ${MAIN_DIR}
[3520]795    cd ${SETTE_DIR}
[4252]796    . ./param.cfg
797    . ./all_functions.sh
798    . ./prepare_exe_dir.sh
[10755]799    set_valid_dir
[10698]800    clean_valid_dir
[3520]801    JOB_FILE=${EXE_DIR}/run_job.sh
802    NPROC=32
[4245]803    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]804    cd ${EXE_DIR}
[9019]805    set_namelist namelist_cfg cn_exp \"AMM12_84\"
[4147]806    set_namelist namelist_cfg nn_it000 1
807    set_namelist namelist_cfg nn_itend 576
808    set_namelist namelist_cfg jpni 8
809    set_namelist namelist_cfg jpnj 4
[10573]810    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4245]811    if [ ${USING_MPMD} == "yes" ] ; then
812       set_xio_using_server iodef.xml true
813    else
814       set_xio_using_server iodef.xml false
815    fi
[3520]816    cd ${SETTE_DIR}
[10755]817    . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]818    cd ${SETTE_DIR}
819    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
820
821    cd ${SETTE_DIR}
[3680]822    export TEST_NAME="REPRO_4_8"
[4252]823    . ./prepare_exe_dir.sh
[10755]824    set_valid_dir
[10698]825    clean_valid_dir
[5478]826    JOB_FILE=${EXE_DIR}/run_job.sh
827    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]828    cd ${EXE_DIR}
[9019]829    set_namelist namelist_cfg cn_exp \"AMM12_48\"
[4147]830    set_namelist namelist_cfg nn_it000 1
831    set_namelist namelist_cfg nn_itend 576
832    set_namelist namelist_cfg jpni 4
833    set_namelist namelist_cfg jpnj 8
[10573]834    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4245]835    if [ ${USING_MPMD} == "yes" ] ; then
836       set_xio_using_server iodef.xml true
837    else
838       set_xio_using_server iodef.xml false
839    fi
[3520]840    cd ${SETTE_DIR}
[10755]841    . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]842    cd ${SETTE_DIR}
[3532]843    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]844fi
845
846
[9518]847# ---------
848# ORCA2_SAS
849# ---------
[10747]850if [ ${config} == "SAS" ] ;  then
[9518]851## Restartability tests
[4147]852    export TEST_NAME="LONG"
[9658]853    cd ${MAIN_DIR}
[12569]854    #
855    # syncronisation if target directory/file exist (not done by makenemo)
856    . ${SETTE_DIR}/all_functions.sh
857    sync_config  ORCA2_SAS_ICE ORCA2_SAS_ICE_ST 'cfgs'
858    clean_config ORCA2_SAS_ICE ORCA2_SAS_ICE_ST 'cfgs'
859    #
[11497]860    . ./makenemo -m ${CMP_NAM} -n ORCA2_SAS_ICE_ST -r ORCA2_SAS_ICE -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[4147]861    cd ${SETTE_DIR}
[4252]862    . ./param.cfg
863    . ./all_functions.sh
864    . ./prepare_exe_dir.sh
[10755]865    set_valid_dir
[10698]866    clean_valid_dir
[4147]867    JOB_FILE=${EXE_DIR}/run_job.sh
868    NPROC=32
[7646]869    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[4147]870    cd ${EXE_DIR}
871    set_namelist namelist_cfg cn_exp \"SAS\"
872    set_namelist namelist_cfg nn_it000 1
[10750]873    set_namelist namelist_cfg nn_itend 256
874    set_namelist namelist_cfg nn_stock 128
[7646]875    set_namelist namelist_cfg jpni 4
876    set_namelist namelist_cfg jpnj 8
[10573]877    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9019]878    set_namelist namelist_ice_cfg ln_icediachk .true.
[4245]879    if [ ${USING_MPMD} == "yes" ] ; then
880       set_xio_using_server iodef.xml true
881    else
882       set_xio_using_server iodef.xml false
883    fi
[4147]884    cd ${SETTE_DIR}
[10755]885    . ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4147]886
887    cd ${SETTE_DIR}
888    export TEST_NAME="SHORT"
[4252]889    . ./prepare_exe_dir.sh
[10755]890    set_valid_dir
[10698]891    clean_valid_dir
[4147]892    cd ${EXE_DIR}
893    set_namelist namelist_cfg cn_exp \"SAS\"
[10750]894    set_namelist namelist_cfg nn_it000 129
895    set_namelist namelist_cfg nn_itend 256
[7646]896    set_namelist namelist_cfg jpni 4
897    set_namelist namelist_cfg jpnj 8
[10573]898    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[7646]899    set_namelist namelist_cfg ln_rstart .true.
[4147]900    set_namelist namelist_cfg nn_rstctl 2
[9019]901    set_namelist namelist_cfg nn_date0 010109
[10750]902    set_namelist namelist_cfg cn_ocerst_in \"SAS_00000128_restart\"
903    set_namelist namelist_ice_cfg cn_icerst_in \"SAS_00000128_restart_ice\"
[4245]904    if [ ${USING_MPMD} == "yes" ] ; then
905       set_xio_using_server iodef.xml true
906    else
907       set_xio_using_server iodef.xml false
908    fi
[7646]909    for (( i=1; i<=$NPROC; i++)) ; do
910        L_NPROC=$(( $i - 1 ))
911        L_NPROC=`printf "%04d\n" ${L_NPROC}`
[10750]912        ln -sf ../LONG/SAS_00000128_restart_${L_NPROC}.nc .
913        ln -sf ../LONG/SAS_00000128_restart_ice_${L_NPROC}.nc .
[7646]914    done
[4147]915    cd ${SETTE_DIR}
[10755]916    . ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4147]917    cd ${SETTE_DIR}
918    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
919
[9518]920## Reproducibility tests
921    export TEST_NAME="REPRO_4_8"
[9658]922    cd ${MAIN_DIR}
[4990]923    cd ${SETTE_DIR}
924    . ./param.cfg
925    . ./all_functions.sh
926    . ./prepare_exe_dir.sh
[10755]927    set_valid_dir
[10698]928    clean_valid_dir
[4990]929    JOB_FILE=${EXE_DIR}/run_job.sh
[9518]930    NPROC=32
[4990]931    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
932    cd ${EXE_DIR}
[9518]933    set_namelist namelist_cfg cn_exp \"SAS_48\"
[4990]934    set_namelist namelist_cfg nn_it000 1
[10750]935    set_namelist namelist_cfg nn_itend 80
[9518]936    set_namelist namelist_cfg jpni 4
937    set_namelist namelist_cfg jpnj 8
[10573]938    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4990]939    if [ ${USING_MPMD} == "yes" ] ; then
940       set_xio_using_server iodef.xml true
941    else
942       set_xio_using_server iodef.xml false
943    fi
944    cd ${SETTE_DIR}
[10755]945    . ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]946    cd ${SETTE_DIR}
947    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[9019]948
[4990]949    cd ${SETTE_DIR}
[7646]950    export TEST_NAME="REPRO_8_4"
[4990]951    . ./prepare_exe_dir.sh
[10755]952    set_valid_dir
[10698]953    clean_valid_dir
[4990]954    JOB_FILE=${EXE_DIR}/run_job.sh
[7646]955    NPROC=32
[4990]956    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
957    cd ${EXE_DIR}
[9518]958    set_namelist namelist_cfg cn_exp \"SAS_84\"
[4990]959    set_namelist namelist_cfg nn_it000 1
[10750]960    set_namelist namelist_cfg nn_itend 80
[7646]961    set_namelist namelist_cfg jpni 8
962    set_namelist namelist_cfg jpnj 4
[10573]963    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4990]964    if [ ${USING_MPMD} == "yes" ] ; then
965       set_xio_using_server iodef.xml true
966    else
967       set_xio_using_server iodef.xml false
968    fi
969    cd ${SETTE_DIR}
[10755]970    . ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]971    cd ${SETTE_DIR}
972    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
973
974fi
975
[9518]976
977# --------------
[9663]978# ORCA2_ICE_OBS
[9518]979# --------------
[4990]980## Test assimilation interface code, OBS and ASM for reproducibility
981## Restartability not tested (ASM code not restartable while increments are being applied)
[10747]982if [ ${config} == "ORCA2_ICE_OBS" ] ; then
[9518]983## Reproducibility tests
[7646]984    export TEST_NAME="REPRO_4_8"
[9658]985    cd ${MAIN_DIR}
[12569]986    #
987    # syncronisation if target directory/file exist (not done by makenemo)
988    . ${SETTE_DIR}/all_functions.sh
989    sync_config  ORCA2_ICE_PISCES ORCA2_ICE_OBS_ST 'cfgs'
990    clean_config ORCA2_ICE_PISCES ORCA2_ICE_OBS_ST 'cfgs'
991    #
[10687]992    . ./makenemo -m ${CMP_NAM} -n ORCA2_ICE_OBS_ST -r ORCA2_ICE_PISCES -d "OCE ICE"  -j 8 add_key "key_asminc ${ADD_KEYS}" del_key "key_top"
[4990]993    cd ${SETTE_DIR}
994    . ./param.cfg
995    . ./all_functions.sh
996    . ./prepare_exe_dir.sh
[10755]997    set_valid_dir
[10698]998    clean_valid_dir
[4990]999    JOB_FILE=${EXE_DIR}/run_job.sh
[7646]1000    NPROC=32
[4990]1001    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
1002    cd ${EXE_DIR}
[9019]1003    set_namelist namelist_cfg cn_exp \"O2L3OBS_48\"
[4990]1004    set_namelist namelist_cfg nn_it000 1
[10750]1005    set_namelist namelist_cfg nn_itend 80
[7646]1006    set_namelist namelist_cfg ln_read_cfg .true.
[4990]1007    set_namelist namelist_cfg jpni 4
[7646]1008    set_namelist namelist_cfg jpnj 8
[10573]1009    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
1010    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[6140]1011    set_namelist namelist_cfg ln_diaobs .true.
[4990]1012    set_namelist namelist_cfg ln_t3d .true.
1013    set_namelist namelist_cfg ln_s3d .true.
1014    set_namelist namelist_cfg ln_sst .true.
1015    set_namelist namelist_cfg ln_sla .true.
[6140]1016    set_namelist namelist_cfg ln_sic .true.
1017    set_namelist namelist_cfg ln_vel3d .true.
[4990]1018    set_namelist namelist_cfg ln_bkgwri .true.
1019    set_namelist namelist_cfg ln_trainc .true.
1020    set_namelist namelist_cfg ln_dyninc .true.
1021    set_namelist namelist_cfg ln_sshinc .true.
1022    set_namelist namelist_cfg ln_asmiau .true.
[9663]1023    #remove all useless options for pisces (due to ORCA2_ICE_PISCES reference configuration)
[7722]1024    set_namelist namelist_top_cfg ln_trcdta .false.
[12428]1025    set_namelist namelist_top_cfg ln_trcbc  .false.
[7722]1026    # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false
1027    # if not you need input files, and for tests is not necessary
1028    set_namelist namelist_pisces_cfg ln_varpar .false.
1029    set_namelist namelist_pisces_cfg ln_ironsed .false.
1030    set_namelist namelist_pisces_cfg ln_ironice .false.
1031    set_namelist namelist_pisces_cfg ln_hydrofe .false.
[4990]1032    if [ ${USING_MPMD} == "yes" ] ; then
1033       set_xio_using_server iodef.xml true
1034    else
1035       set_xio_using_server iodef.xml false
1036    fi
1037    cd ${SETTE_DIR}
[10755]1038    . ./prepare_job.sh input_ORCA2_ICE_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]1039    cd ${SETTE_DIR}
1040    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
1041
1042   cd ${SETTE_DIR}
[7646]1043    export TEST_NAME="REPRO_8_4"
[4990]1044    . ./prepare_exe_dir.sh
[10755]1045    set_valid_dir
[10698]1046    clean_valid_dir
[4990]1047    JOB_FILE=${EXE_DIR}/run_job.sh
[7646]1048    NPROC=32
[4990]1049    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
1050    cd ${EXE_DIR}
[9019]1051    set_namelist namelist_cfg cn_exp \"O2L3OBS_84\"
[4990]1052    set_namelist namelist_cfg nn_it000 1
[10750]1053    set_namelist namelist_cfg nn_itend 80
[7646]1054    set_namelist namelist_cfg ln_read_cfg .true.
1055    set_namelist namelist_cfg jpni 8
1056    set_namelist namelist_cfg jpnj 4
[10573]1057    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
1058    set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[6140]1059    set_namelist namelist_cfg ln_diaobs .true.
[4990]1060    set_namelist namelist_cfg ln_t3d .true.
1061    set_namelist namelist_cfg ln_s3d .true.
1062    set_namelist namelist_cfg ln_sst .true.
1063    set_namelist namelist_cfg ln_sla .true.
[6140]1064    set_namelist namelist_cfg ln_sic .true.
1065    set_namelist namelist_cfg ln_vel3d .true.
[4990]1066    set_namelist namelist_cfg ln_bkgwri .true.
1067    set_namelist namelist_cfg ln_trainc .true.
1068    set_namelist namelist_cfg ln_dyninc .true.
1069    set_namelist namelist_cfg ln_sshinc .true.
1070    set_namelist namelist_cfg ln_asmiau .true.
[9663]1071    #remove all useless options for pisces (due to ORCA2_ICE_PISCES reference configuration)
[7722]1072    set_namelist namelist_top_cfg ln_trcdta .false.
[12428]1073    set_namelist namelist_top_cfg ln_trcbc  .false.
[7722]1074    # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false
1075    # if not you need input files, and for tests is not necessary
1076    set_namelist namelist_pisces_cfg ln_varpar .false.
1077    set_namelist namelist_pisces_cfg ln_ironsed .false.
1078    set_namelist namelist_pisces_cfg ln_ironice .false.
1079    set_namelist namelist_pisces_cfg ln_hydrofe .false.
[4990]1080    if [ ${USING_MPMD} == "yes" ] ; then
1081       set_xio_using_server iodef.xml true
1082    else
1083       set_xio_using_server iodef.xml false
1084    fi
1085    cd ${SETTE_DIR}
[10755]1086    . ./prepare_job.sh input_ORCA2_ICE_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]1087    cd ${SETTE_DIR}
1088    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
1089fi
[5589]1090
[9483]1091# ------------
[9663]1092# AGRIF ICE
[9483]1093# -----------
[10747]1094if [ ${config} == "AGRIF" ] ;  then
[9518]1095## Restartability tests
[9483]1096    export TEST_NAME="LONG"
[9658]1097    cd ${MAIN_DIR}
[12569]1098    #
1099    # syncronisation if target directory/file exist (not done by makenemo)
1100    . ${SETTE_DIR}/all_functions.sh
1101    sync_config  AGRIF_DEMO AGRIF_DEMO_ST 'cfgs'
1102    clean_config AGRIF_DEMO AGRIF_DEMO_ST 'cfgs'
1103    #
[11497]1104    . ./makenemo -m ${CMP_NAM} -n AGRIF_DEMO_ST -r AGRIF_DEMO -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9483]1105    cd ${SETTE_DIR}
1106    . ./param.cfg
1107    . ./all_functions.sh
1108    . ./prepare_exe_dir.sh
[10755]1109    set_valid_dir
[10698]1110    clean_valid_dir
[9483]1111    JOB_FILE=${EXE_DIR}/run_job.sh
[9776]1112    NPROC=16
[9483]1113    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
1114    cd ${EXE_DIR}
1115    set_namelist namelist_cfg cn_exp \"AGRIF_LONG\"
1116    set_namelist namelist_cfg nn_it000 1
1117    set_namelist namelist_cfg nn_itend 20
1118    set_namelist namelist_cfg nn_stock 10
[10573]1119    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]1120    set_namelist 1_namelist_cfg cn_exp \"AGRIF_LONG\"
1121    set_namelist 1_namelist_cfg nn_it000 1
[9776]1122    set_namelist 1_namelist_cfg nn_itend 20
1123    set_namelist 1_namelist_cfg nn_stock 10
[10573]1124    set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9483]1125    set_namelist 2_namelist_cfg cn_exp \"AGRIF_LONG\"
1126    set_namelist 2_namelist_cfg nn_it000 1
[9776]1127    set_namelist 2_namelist_cfg nn_itend 80
1128    set_namelist 2_namelist_cfg nn_stock 40
[10573]1129    set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[9776]1130    set_namelist 3_namelist_cfg cn_exp \"AGRIF_LONG\"
1131    set_namelist 3_namelist_cfg nn_it000 1
1132    set_namelist 3_namelist_cfg nn_itend 240
1133    set_namelist 3_namelist_cfg nn_stock 120
[10573]1134    set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9507]1135
[9483]1136    if [ ${USING_MPMD} == "yes" ] ; then
1137       set_xio_using_server iodef.xml true
1138    else
1139       set_xio_using_server iodef.xml false
1140    fi
1141    cd ${SETTE_DIR}
[10755]1142    . ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]1143   
1144    cd ${SETTE_DIR}
1145    export TEST_NAME="SHORT"
1146    . ./prepare_exe_dir.sh
[10755]1147    set_valid_dir
[10698]1148    clean_valid_dir
[9483]1149    cd ${EXE_DIR}
1150    set_namelist namelist_cfg cn_exp \"AGRIF_SHORT\"
1151    set_namelist namelist_cfg nn_it000 11
1152    set_namelist namelist_cfg nn_itend 20
1153    set_namelist namelist_cfg nn_stock 10
[10573]1154    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]1155    set_namelist namelist_cfg ln_rstart .true.
1156    set_namelist namelist_cfg nn_rstctl 2
1157    set_namelist 1_namelist_cfg cn_exp \"AGRIF_SHORT\"
[9776]1158    set_namelist 1_namelist_cfg nn_it000 11
1159    set_namelist 1_namelist_cfg nn_itend 20
1160    set_namelist 1_namelist_cfg nn_stock 10
[10573]1161    set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9483]1162    set_namelist 1_namelist_cfg ln_rstart .true.
1163    set_namelist 1_namelist_cfg nn_rstctl 2
1164    set_namelist 2_namelist_cfg cn_exp \"AGRIF_SHORT\"
[9776]1165    set_namelist 2_namelist_cfg nn_it000 41
1166    set_namelist 2_namelist_cfg nn_itend 80
1167    set_namelist 2_namelist_cfg nn_stock 40
[10573]1168    set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[9483]1169    set_namelist 2_namelist_cfg ln_rstart .true.
1170    set_namelist 2_namelist_cfg nn_rstctl 2
[9776]1171    set_namelist 3_namelist_cfg cn_exp \"AGRIF_SHORT\"
1172    set_namelist 3_namelist_cfg nn_it000 121
1173    set_namelist 3_namelist_cfg nn_itend 240
1174    set_namelist 3_namelist_cfg nn_stock 120
[10573]1175    set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9776]1176    set_namelist 3_namelist_cfg ln_rstart .true.
1177    set_namelist 3_namelist_cfg nn_rstctl 2
[9483]1178    set_namelist namelist_cfg cn_ocerst_in \"AGRIF_LONG_00000010_restart\"
1179    set_namelist namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_00000010_restart_ice\"
[9776]1180    set_namelist 1_namelist_cfg cn_ocerst_in \"AGRIF_LONG_00000010_restart\"
1181    set_namelist 1_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_00000010_restart_ice\"
1182    set_namelist 2_namelist_cfg cn_ocerst_in \"AGRIF_LONG_00000040_restart\"
1183    set_namelist 2_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_00000040_restart_ice\"
1184    set_namelist 3_namelist_cfg cn_ocerst_in \"AGRIF_LONG_00000120_restart\"
1185    set_namelist 3_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_00000120_restart_ice\"
[9483]1186
1187    for (( i=1; i<=$NPROC; i++)) ; do
1188        L_NPROC=$(( $i - 1 ))
1189        L_NPROC=`printf "%04d\n" ${L_NPROC}`
1190        ln -sf ../LONG/AGRIF_LONG_00000010_restart_${L_NPROC}.nc .
1191        ln -sf ../LONG/AGRIF_LONG_00000010_restart_ice_${L_NPROC}.nc .
[9776]1192        ln -sf ../LONG/1_AGRIF_LONG_00000010_restart_${L_NPROC}.nc .
1193        ln -sf ../LONG/1_AGRIF_LONG_00000010_restart_ice_${L_NPROC}.nc .
1194        ln -sf ../LONG/2_AGRIF_LONG_00000040_restart_${L_NPROC}.nc .
1195        ln -sf ../LONG/2_AGRIF_LONG_00000040_restart_ice_${L_NPROC}.nc .
1196        ln -sf ../LONG/3_AGRIF_LONG_00000120_restart_${L_NPROC}.nc .
1197        ln -sf ../LONG/3_AGRIF_LONG_00000120_restart_ice_${L_NPROC}.nc .
[9483]1198    done
1199    if [ ${USING_MPMD} == "yes" ] ; then
1200       set_xio_using_server iodef.xml true
1201    else
1202       set_xio_using_server iodef.xml false
1203    fi
1204    cd ${SETTE_DIR}
[10755]1205    . ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]1206    cd ${SETTE_DIR}
1207    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
1208
[9518]1209## Reproducibility tests
[11800]1210    export TEST_NAME="REPRO_2_8"
[9658]1211    cd ${MAIN_DIR}
[9483]1212    cd ${SETTE_DIR}
1213    . ./param.cfg
1214    . ./all_functions.sh
1215    . ./prepare_exe_dir.sh
[10755]1216    set_valid_dir
[10698]1217    clean_valid_dir
[9483]1218    JOB_FILE=${EXE_DIR}/run_job.sh
[11800]1219    NPROC=16
[9483]1220    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
1221    cd ${EXE_DIR}
[11800]1222    set_namelist namelist_cfg cn_exp \"AGRIF_28\"
[9483]1223    set_namelist namelist_cfg nn_it000 1
1224    set_namelist namelist_cfg nn_itend 20
[11800]1225    set_namelist namelist_cfg jpni 2
[9483]1226    set_namelist namelist_cfg jpnj 8
[10573]1227    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[11800]1228    set_namelist 1_namelist_cfg cn_exp \"AGRIF_28\"
[9483]1229    set_namelist 1_namelist_cfg nn_it000 1
[9776]1230    set_namelist 1_namelist_cfg nn_itend 20
[11800]1231    set_namelist 1_namelist_cfg jpni 2
[9483]1232    set_namelist 1_namelist_cfg jpnj 8
[10573]1233    set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[11800]1234    set_namelist 2_namelist_cfg cn_exp \"AGRIF_28\"
[9483]1235    set_namelist 2_namelist_cfg nn_it000 1
[9776]1236    set_namelist 2_namelist_cfg nn_itend 80
[11800]1237    set_namelist 2_namelist_cfg jpni 2
[9483]1238    set_namelist 2_namelist_cfg jpnj 8
[10573]1239    set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[11800]1240    set_namelist 3_namelist_cfg cn_exp \"AGRIF_28\"
[9776]1241    set_namelist 3_namelist_cfg nn_it000 1
1242    set_namelist 3_namelist_cfg nn_itend 240
[11800]1243    set_namelist 3_namelist_cfg jpni 2
[9776]1244    set_namelist 3_namelist_cfg jpnj 8
[10573]1245    set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9483]1246
1247    if [ ${USING_MPMD} == "yes" ] ; then
1248       set_xio_using_server iodef.xml true
1249    else
1250       set_xio_using_server iodef.xml false
1251    fi
1252    cd ${SETTE_DIR}
[10755]1253    . ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]1254    cd ${SETTE_DIR}
1255    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
1256
1257    cd ${SETTE_DIR}
[11800]1258    export TEST_NAME="REPRO_4_4"
[9483]1259    . ./prepare_exe_dir.sh
[10755]1260    set_valid_dir
[10698]1261    clean_valid_dir
[9483]1262    JOB_FILE=${EXE_DIR}/run_job.sh
[11800]1263    NPROC=16
[9483]1264    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
1265    cd ${EXE_DIR}
[11800]1266    set_namelist namelist_cfg cn_exp \"AGRIF_44\"
[9483]1267    set_namelist namelist_cfg nn_it000 1
1268    set_namelist namelist_cfg nn_itend 20
[11800]1269    set_namelist namelist_cfg jpni 4
[9483]1270    set_namelist namelist_cfg jpnj 4
[10573]1271    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[11800]1272    set_namelist 1_namelist_cfg cn_exp \"AGRIF_44\"
[9483]1273    set_namelist 1_namelist_cfg nn_it000 1
[9776]1274    set_namelist 1_namelist_cfg nn_itend 20
[11800]1275    set_namelist 1_namelist_cfg jpni 4
[9483]1276    set_namelist 1_namelist_cfg jpnj 4
[10573]1277    set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[11800]1278    set_namelist 2_namelist_cfg cn_exp \"AGRIF_44\"
[9483]1279    set_namelist 2_namelist_cfg nn_it000 1
[9776]1280    set_namelist 2_namelist_cfg nn_itend 80
[11800]1281    set_namelist 2_namelist_cfg jpni 4
[9483]1282    set_namelist 2_namelist_cfg jpnj 4
[10573]1283    set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[12428]1284    set_namelist 3_namelist_cfg cn_exp \"AGRIF_44\"
[9776]1285    set_namelist 3_namelist_cfg nn_it000 1
1286    set_namelist 3_namelist_cfg nn_itend 240
[11800]1287    set_namelist 3_namelist_cfg jpni 4
[9776]1288    set_namelist 3_namelist_cfg jpnj 4
[10573]1289    set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9483]1290
1291    if [ ${USING_MPMD} == "yes" ] ; then
1292       set_xio_using_server iodef.xml true
1293    else
1294       set_xio_using_server iodef.xml false
1295    fi
1296    cd ${SETTE_DIR}
[10755]1297    . ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]1298    cd ${SETTE_DIR}
1299    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
1300
[9507]1301## test code corruption with AGRIF (phase 1) ==> Compile with key_agrif but run with no zoom
1302    export TEST_NAME="ORCA2"
[9658]1303    cd ${MAIN_DIR}
[9483]1304    cd ${SETTE_DIR}
1305    . ./param.cfg
1306    . ./all_functions.sh
1307    . ./prepare_exe_dir.sh
[10755]1308    set_valid_dir
[10698]1309    clean_valid_dir
[9483]1310    JOB_FILE=${EXE_DIR}/run_job.sh
1311    NPROC=32
1312    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
1313    cd ${EXE_DIR}
[9507]1314    set_namelist namelist_cfg cn_exp \"ORCA2\"
[9483]1315    set_namelist namelist_cfg nn_it000 1
1316    set_namelist namelist_cfg nn_itend 150
[10573]1317    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9507]1318
[9483]1319#   Set the number of fine grids to zero:   
1320    sed -i "1s/.*/0/" ${EXE_DIR}/AGRIF_FixedGrids.in
1321
1322    if [ ${USING_MPMD} == "yes" ] ; then
1323       set_xio_using_server iodef.xml true
1324    else
1325       set_xio_using_server iodef.xml false
1326    fi
1327    cd ${SETTE_DIR}
[10755]1328    . ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]1329    cd ${SETTE_DIR}
1330    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
1331
1332fi
1333
[9525]1334
[9776]1335## test code corruption with AGRIF (phase 2) ==> Compile without key_agrif (to be compared with AGRIF_DEMO_ST/ORCA2)
[10747]1336if [ ${config} == "AGRIF" ] ;  then
[9507]1337    export TEST_NAME="ORCA2"
[9658]1338    cd ${MAIN_DIR}
[12569]1339    #
1340    # syncronisation if target directory/file exist (not done by makenemo)
1341    . ${SETTE_DIR}/all_functions.sh
1342    sync_config  AGRIF_DEMO AGRIF_DEMO_NOAGRIF_ST 'cfgs'
1343    clean_config AGRIF_DEMO AGRIF_DEMO_NOAGRIF_ST 'cfgs'
1344    #
[11497]1345    . ./makenemo -m ${CMP_NAM} -n AGRIF_DEMO_NOAGRIF_ST -r AGRIF_DEMO -j 8 add_key "${ADD_KEYS}" del_key "key_agrif"
[9483]1346    cd ${SETTE_DIR}
1347    . ./param.cfg
1348    . ./all_functions.sh
1349    . ./prepare_exe_dir.sh
[10755]1350    set_valid_dir
[10698]1351    clean_valid_dir
[9483]1352    JOB_FILE=${EXE_DIR}/run_job.sh
1353    NPROC=32
1354    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
1355    cd ${EXE_DIR}
[9507]1356    set_namelist namelist_cfg cn_exp \"ORCA2\"
[9483]1357    set_namelist namelist_cfg nn_it000 1
1358    set_namelist namelist_cfg nn_itend 150
[10573]1359    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]1360#
1361    if [ ${USING_MPMD} == "yes" ] ; then
1362       set_xio_using_server iodef.xml true
1363    else
1364       set_xio_using_server iodef.xml false
1365    fi
1366    cd ${SETTE_DIR}
[10755]1367    . ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]1368    cd ${SETTE_DIR}
1369    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
1370
1371fi
1372
[9553]1373# -------
1374# SPITZ12
1375# -------
[10747]1376if [ ${config} == "SPITZ12" ] ;  then
[9553]1377## Restartability tests
1378    export TEST_NAME="LONG"
[9658]1379    cd ${MAIN_DIR}
[12569]1380    #
1381    # syncronisation if target directory/file exist (not done by makenemo)
1382    . ${SETTE_DIR}/all_functions.sh
1383    sync_config  SPITZ12 SPITZ12_ST 'cfgs'
1384    clean_config SPITZ12 SPITZ12_ST 'cfgs'
1385    #
[11497]1386    . ./makenemo -m ${CMP_NAM} -n SPITZ12_ST -r SPITZ12 -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9553]1387    cd ${SETTE_DIR}
1388    . ./param.cfg
1389    . ./all_functions.sh
1390    . ./prepare_exe_dir.sh
[10755]1391    set_valid_dir
[10698]1392    clean_valid_dir
[9553]1393    JOB_FILE=${EXE_DIR}/run_job.sh
1394    NPROC=32
1395    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
1396    cd ${EXE_DIR}
1397    set_namelist namelist_cfg cn_exp \"S12_LONG\"
1398    set_namelist namelist_cfg nn_it000 1
[9744]1399    set_namelist namelist_cfg nn_itend 240
1400    set_namelist namelist_cfg nn_stock 120
1401    set_namelist namelist_cfg nn_date0 20020101
[9553]1402    set_namelist namelist_cfg jpni 4
1403    set_namelist namelist_cfg jpnj 8
[10573]1404    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9744]1405    #set_namelist namelist_ice_cfg ln_icediachk .true.
[9553]1406    if [ ${USING_MPMD} == "yes" ] ; then
1407       set_xio_using_server iodef.xml true
1408    else
1409       set_xio_using_server iodef.xml false
1410    fi
1411    cd ${SETTE_DIR}
[10755]1412    . ./prepare_job.sh input_SPITZ12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]1413   
1414    cd ${SETTE_DIR}
1415    export TEST_NAME="SHORT"
1416    . ./prepare_exe_dir.sh
[10755]1417    set_valid_dir
[10698]1418    clean_valid_dir
[9553]1419    cd ${EXE_DIR}
1420    set_namelist namelist_cfg cn_exp \"S12_SHORT\"
[9744]1421    set_namelist namelist_cfg nn_it000 121
1422    set_namelist namelist_cfg nn_itend 240
1423    set_namelist namelist_cfg nn_stock 120
[9553]1424    set_namelist namelist_cfg ln_rstart .true.
1425    set_namelist namelist_cfg nn_rstctl 2
1426    set_namelist namelist_cfg jpni 4
1427    set_namelist namelist_cfg jpnj 8
[10573]1428    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9744]1429    set_namelist namelist_cfg cn_ocerst_in \"S12_LONG_00000120_restart\"
1430    set_namelist namelist_ice_cfg cn_icerst_in \"S12_LONG_00000120_restart_ice\"
[9553]1431    for (( i=1; i<=$NPROC; i++)) ; do
1432        L_NPROC=$(( $i - 1 ))
1433        L_NPROC=`printf "%04d\n" ${L_NPROC}`
[9744]1434        ln -sf ../LONG/S12_LONG_00000120_restart_${L_NPROC}.nc .
1435        ln -sf ../LONG/S12_LONG_00000120_restart_ice_${L_NPROC}.nc .
[9553]1436    done
1437    if [ ${USING_MPMD} == "yes" ] ; then
1438       set_xio_using_server iodef.xml true
1439    else
1440       set_xio_using_server iodef.xml false
1441    fi
1442    cd ${SETTE_DIR}
[10755]1443    . ./prepare_job.sh input_SPITZ12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]1444    cd ${SETTE_DIR}
1445    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
1446
1447## Reproducibility tests
1448    export TEST_NAME="REPRO_4_8"
[9658]1449    cd ${MAIN_DIR}
[9553]1450    cd ${SETTE_DIR}
1451    . ./param.cfg
1452    . ./all_functions.sh
1453    . ./prepare_exe_dir.sh
[10755]1454    set_valid_dir
[10698]1455    clean_valid_dir
[9553]1456    JOB_FILE=${EXE_DIR}/run_job.sh
1457    NPROC=32
1458    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
1459    cd ${EXE_DIR}
1460    set_namelist namelist_cfg cn_exp \"S12_48\"
1461    set_namelist namelist_cfg nn_it000 1
[9744]1462    set_namelist namelist_cfg nn_itend 120
1463    set_namelist namelist_cfg nn_date0 20020101
[9553]1464    set_namelist namelist_cfg jpni 4
1465    set_namelist namelist_cfg jpnj 8
[10573]1466    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9553]1467    if [ ${USING_MPMD} == "yes" ] ; then
1468       set_xio_using_server iodef.xml true
1469    else
1470       set_xio_using_server iodef.xml false
1471    fi
1472    cd ${SETTE_DIR}
[10755]1473    . ./prepare_job.sh input_SPITZ12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]1474    cd ${SETTE_DIR}
1475    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
1476
1477    cd ${SETTE_DIR}
1478    export TEST_NAME="REPRO_8_4"
1479    . ./prepare_exe_dir.sh
[10755]1480    set_valid_dir
[10698]1481    clean_valid_dir
[9553]1482    JOB_FILE=${EXE_DIR}/run_job.sh
1483    NPROC=32
1484    if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
1485    cd ${EXE_DIR}
1486    set_namelist namelist_cfg cn_exp \"S12_84\"
1487    set_namelist namelist_cfg nn_it000 1
[9744]1488    set_namelist namelist_cfg nn_itend 120
1489    set_namelist namelist_cfg nn_date0 20020101
[9553]1490    set_namelist namelist_cfg jpni 8
1491    set_namelist namelist_cfg jpnj 4
[10573]1492    set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9553]1493    if [ ${USING_MPMD} == "yes" ] ; then
1494       set_xio_using_server iodef.xml true
1495    else
1496       set_xio_using_server iodef.xml false
1497    fi
1498    cd ${SETTE_DIR}
[10755]1499    . ./prepare_job.sh input_SPITZ12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]1500    cd ${SETTE_DIR}
1501    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
1502fi
1503
1504
[3520]1505done
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