[7683] | 1 | PROGRAM rebuild_nemo |
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[10338] | 2 | #define key_netcdf4 |
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[7683] | 3 | !!========================================================================= |
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| 4 | !! *** rebuild_nemo *** |
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| 5 | !!========================================================================= |
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| 6 | !! |
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| 7 | !! A routine to rebuild NEMO files from multiple processors into one file. |
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| 8 | !! This routine is designed to be much quicker than the old IOIPSL rebuild |
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| 9 | !! but at the cost of an increased memory usage. |
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| 10 | !! |
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| 11 | !! NEMO rebuild has the following features: |
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| 12 | !! * dynamically works out what variables require rebuilding |
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| 13 | !! * does not copy subdomain halo regions |
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| 14 | !! * works for 1,2,3 and 4d arrays or types for all valid NetCDF types |
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| 15 | !! * utilises OMP shared memory parallelisation where applicable |
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[10338] | 16 | !! * time 'slicing' for lower memory use |
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[7683] | 17 | !! (only for 4D vars with unlimited dimension) |
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| 18 | !! |
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| 19 | !! Ed Blockley - August 2011 |
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| 20 | !! (based on original code by Matt Martin) |
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[10338] | 21 | !! Julien Palmieri and Andrew Coward - September 2018 (add compression and chunking) |
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[7683] | 22 | !! |
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| 23 | !!------------------------------------------------------------------------- |
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| 24 | !! |
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| 25 | !! The code reads the filestem and number of subdomains from the namelist file nam_rebuild. |
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| 26 | !! |
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| 27 | !! The 1st subdomain file is used to determine the dimensions and variables in all the input files. |
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| 28 | !! It is also used to find which dimensions (and hence which variables) require rebuilding |
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| 29 | !! as well as information about the global domain. |
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| 30 | !! |
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| 31 | !! It then opens all the input files (unbuffered) and creates an array of netcdf identifiers |
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| 32 | !! before looping through all the variables and updating the rebuilt output file (either by direct |
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| 33 | !! copying or looping over the number of domains and rebuilding as appropriate). |
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| 34 | !! |
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| 35 | !! The code looks more complicated than it is because it has lots of case statements to deal with all |
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| 36 | !! the various NetCDF data types and with various data dimensions (up to 4d). |
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| 37 | !! |
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| 38 | !! Diagnostic output is written to numout (default 6 - stdout) |
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| 39 | !! and errors are written to numerr (default 0 - stderr). |
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| 40 | !! |
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[10338] | 41 | !! If time slicing is specified the code will use less memory but take a little longer. |
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[7683] | 42 | !! It does this by breaking down the 4D input variables over their 4th dimension |
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| 43 | !! (generally time) by way of a while loop. |
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| 44 | !! |
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| 45 | !!------------------------------------------------------------------------------- |
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| 46 | |
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| 47 | USE netcdf |
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| 48 | |
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| 49 | !$ USE omp_lib ! Note OpenMP sentinel |
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| 50 | |
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| 51 | IMPLICIT NONE |
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| 52 | |
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| 53 | ! kind specifications |
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| 54 | INTEGER,PARAMETER :: i1=SELECTED_INT_KIND(2) ! NF90_BYTE |
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| 55 | INTEGER,PARAMETER :: i2=SELECTED_INT_KIND(4) ! NF90_SHORT |
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| 56 | INTEGER,PARAMETER :: i4=SELECTED_INT_KIND(9) ! NF90_INT |
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| 57 | INTEGER,PARAMETER :: sp=SELECTED_REAL_KIND(6,37) ! NF90_FLOAT |
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| 58 | INTEGER,PARAMETER :: dp=SELECTED_REAL_KIND(12,307) ! NF90_DOUBLE |
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| 59 | |
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| 60 | INTEGER,PARAMETER :: numnam = 11 |
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| 61 | INTEGER,PARAMETER :: numout = 6 |
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| 62 | INTEGER,PARAMETER :: numerr = 0 |
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| 63 | |
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| 64 | LOGICAL, PARAMETER :: l_verbose = .true. |
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| 65 | |
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| 66 | CHARACTER(LEN=nf90_max_name) :: filebase, suffix, attname, dimname, varname, time, date, zone, timestamp |
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| 67 | CHARACTER(LEN=nf90_max_name), ALLOCATABLE :: filenames(:), indimnames(:) |
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| 68 | CHARACTER(LEN=nf90_max_name), DIMENSION(2) :: dims |
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[10338] | 69 | CHARACTER(LEN=256) :: cnampath, cdimlst, cdim |
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| 70 | CHARACTER(LEN=50) :: clibnc ! netcdf library version |
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[7683] | 71 | |
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[10338] | 72 | INTEGER :: ndomain, ifile, ndomain_file, nslicesize, deflate_level |
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[7683] | 73 | INTEGER :: ncid, outid, idim, istop |
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| 74 | INTEGER :: natts, attid, xtype, varid, rbdims |
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| 75 | INTEGER :: jv, ndims, nvars, dimlen, dimids(4) |
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| 76 | INTEGER :: dimid, unlimitedDimId, di, dj, dr |
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[10338] | 77 | INTEGER :: nmax_unlimited, nt, ntslice |
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| 78 | INTEGER :: fchunksize = 32000000 ! NetCDF global file chunk cache size |
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| 79 | INTEGER :: patchchunk ! NetCDF processor-domain file chunk cache size |
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[7683] | 80 | INTEGER :: nthreads = 1 |
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[10338] | 81 | INTEGER :: chunkalg = 0 ! NetCDF4 variable chunking algorithm |
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| 82 | ! Default variable chunksizes (typical ORCA025 |
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| 83 | ! recommendations which can be adjusted via namelist |
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| 84 | ! or will be bounded if too large for domain.) |
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| 85 | INTEGER :: nc4_xchunk = 206 ! Default x (longitude) variable chunk size |
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| 86 | INTEGER :: nc4_ychunk = 135 ! Default y (latitude) variable chunk size |
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| 87 | INTEGER :: nc4_zchunk = 1 ! Default z (depth) variable chunk size (almost always 1) |
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| 88 | INTEGER :: nc4_tchunk = 1 ! Default t (time) variable chunk size (almost always 1) |
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[7683] | 89 | INTEGER, ALLOCATABLE :: outdimids(:), outdimlens(:), indimlens(:), inncids(:) |
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[10338] | 90 | INTEGER, ALLOCATABLE :: chunksizes(:) |
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[7683] | 91 | INTEGER, ALLOCATABLE :: global_sizes(:), rebuild_dims(:) |
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| 92 | INTEGER, DIMENSION(2) :: halo_start, halo_end, local_sizes |
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| 93 | INTEGER, DIMENSION(2) :: idomain, jdomain, rdomain, start_pos |
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| 94 | INTEGER :: ji, jj, jk, jl, jr |
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[10338] | 95 | INTEGER :: nargs ! number of arguments |
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| 96 | INTEGER, EXTERNAL :: iargc |
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[7683] | 97 | |
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| 98 | REAL(sp) :: ValMin, ValMax, InMin, InMax, rmdi |
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| 99 | REAL(dp), ALLOCATABLE :: mdiVals(:) |
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| 100 | |
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| 101 | ! NF90_BYTE local data arrays |
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| 102 | INTEGER(i1), ALLOCATABLE, SAVE, DIMENSION(:) :: localdata_1d_i1 |
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| 103 | INTEGER(i1), ALLOCATABLE, SAVE, DIMENSION(:,:) :: localdata_2d_i1 |
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| 104 | INTEGER(i1), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: localdata_3d_i1 |
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| 105 | INTEGER(i1), ALLOCATABLE, SAVE, DIMENSION(:,:,:,:) :: localdata_4d_i1 |
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| 106 | |
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| 107 | ! NF90_SHORT local data arrays |
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| 108 | INTEGER(i2), ALLOCATABLE, SAVE, DIMENSION(:) :: localdata_1d_i2 |
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| 109 | INTEGER(i2), ALLOCATABLE, SAVE, DIMENSION(:,:) :: localdata_2d_i2 |
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| 110 | INTEGER(i2), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: localdata_3d_i2 |
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| 111 | INTEGER(i2), ALLOCATABLE, SAVE, DIMENSION(:,:,:,:) :: localdata_4d_i2 |
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| 112 | |
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| 113 | ! NF90_INT local data arrays |
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| 114 | INTEGER(i4), ALLOCATABLE, SAVE, DIMENSION(:) :: localdata_1d_i4 |
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| 115 | INTEGER(i4), ALLOCATABLE, SAVE, DIMENSION(:,:) :: localdata_2d_i4 |
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| 116 | INTEGER(i4), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: localdata_3d_i4 |
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| 117 | INTEGER(i4), ALLOCATABLE, SAVE, DIMENSION(:,:,:,:) :: localdata_4d_i4 |
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| 118 | |
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| 119 | ! NF90_FLOAT local data arrays |
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| 120 | REAL(sp), ALLOCATABLE, SAVE, DIMENSION(:) :: localdata_1d_sp |
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| 121 | REAL(sp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: localdata_2d_sp |
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| 122 | REAL(sp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: localdata_3d_sp |
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| 123 | REAL(sp), ALLOCATABLE, SAVE, DIMENSION(:,:,:,:) :: localdata_4d_sp |
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| 124 | |
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| 125 | ! NF90_DOUBLE local data arrays |
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| 126 | REAL(dp), ALLOCATABLE, SAVE, DIMENSION(:) :: localdata_1d_dp |
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| 127 | REAL(dp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: localdata_2d_dp |
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| 128 | REAL(dp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: localdata_3d_dp |
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| 129 | REAL(dp), ALLOCATABLE, SAVE, DIMENSION(:,:,:,:) :: localdata_4d_dp |
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| 130 | |
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| 131 | ! NF90_BYTE global data arrays |
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| 132 | INTEGER(i1) :: globaldata_0d_i1 |
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| 133 | INTEGER(i1), ALLOCATABLE, DIMENSION(:) :: globaldata_1d_i1 |
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| 134 | INTEGER(i1), ALLOCATABLE, DIMENSION(:,:) :: globaldata_2d_i1 |
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| 135 | INTEGER(i1), ALLOCATABLE, DIMENSION(:,:,:) :: globaldata_3d_i1 |
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| 136 | INTEGER(i1), ALLOCATABLE, DIMENSION(:,:,:,:) :: globaldata_4d_i1 |
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| 137 | |
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| 138 | ! NF90_SHORT global data arrays |
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| 139 | INTEGER(i2) :: globaldata_0d_i2 |
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| 140 | INTEGER(i2), ALLOCATABLE, DIMENSION(:) :: globaldata_1d_i2 |
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| 141 | INTEGER(i2), ALLOCATABLE, DIMENSION(:,:) :: globaldata_2d_i2 |
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| 142 | INTEGER(i2), ALLOCATABLE, DIMENSION(:,:,:) :: globaldata_3d_i2 |
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| 143 | INTEGER(i2), ALLOCATABLE, DIMENSION(:,:,:,:) :: globaldata_4d_i2 |
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| 144 | |
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| 145 | ! NF90_INT global data arrays |
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| 146 | INTEGER(i4) :: globaldata_0d_i4 |
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| 147 | INTEGER(i4), ALLOCATABLE, DIMENSION(:) :: globaldata_1d_i4 |
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| 148 | INTEGER(i4), ALLOCATABLE, DIMENSION(:,:) :: globaldata_2d_i4 |
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| 149 | INTEGER(i4), ALLOCATABLE, DIMENSION(:,:,:) :: globaldata_3d_i4 |
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| 150 | INTEGER(i4), ALLOCATABLE, DIMENSION(:,:,:,:) :: globaldata_4d_i4 |
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| 151 | |
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| 152 | ! NF90_FLOAT global data arrays |
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| 153 | REAL(sp) :: globaldata_0d_sp |
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| 154 | REAL(sp), ALLOCATABLE, DIMENSION(:) :: globaldata_1d_sp |
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| 155 | REAL(sp), ALLOCATABLE, DIMENSION(:,:) :: globaldata_2d_sp |
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| 156 | REAL(sp), ALLOCATABLE, DIMENSION(:,:,:) :: globaldata_3d_sp |
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| 157 | REAL(sp), ALLOCATABLE, DIMENSION(:,:,:,:) :: globaldata_4d_sp |
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| 158 | |
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| 159 | ! NF90_DOUBLE global data arrays |
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| 160 | REAL(dp) :: globaldata_0d_dp |
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| 161 | REAL(dp), ALLOCATABLE, DIMENSION(:) :: globaldata_1d_dp |
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| 162 | REAL(dp), ALLOCATABLE, DIMENSION(:,:) :: globaldata_2d_dp |
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| 163 | REAL(dp), ALLOCATABLE, DIMENSION(:,:,:) :: globaldata_3d_dp |
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| 164 | REAL(dp), ALLOCATABLE, DIMENSION(:,:,:,:) :: globaldata_4d_dp |
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| 165 | |
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[10338] | 166 | LOGICAL :: l_valid = .false. |
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[7683] | 167 | LOGICAL :: l_noRebuild = .false. |
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[10338] | 168 | LOGICAL :: l_findDims = .true. |
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| 169 | LOGICAL :: l_maskout = .false. |
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| 170 | LOGICAL :: l_namexist = .false. |
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[7683] | 171 | |
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[10338] | 172 | NAMELIST/nam_rebuild/ filebase, ndomain, dims, nslicesize, l_maskout, deflate_level, & |
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| 173 | & nc4_xchunk, nc4_ychunk, nc4_zchunk, nc4_tchunk, fchunksize |
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[7683] | 174 | |
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| 175 | external :: getarg |
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| 176 | |
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| 177 | !End of definitions |
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| 178 | |
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| 179 | !-------------------------------------------------------------------------------- |
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| 180 | !0. OMP setup |
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| 181 | |
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| 182 | !$OMP PARALLEL DEFAULT(NONE) SHARED(nthreads) |
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| 183 | !$OMP MASTER |
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| 184 | !$ nthreads = omp_get_num_threads() |
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| 185 | !$ WRITE(numout,*) 'Running OMP with ',nthreads,' thread(s).' |
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| 186 | !$OMP END MASTER |
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| 187 | !$OMP END PARALLEL |
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| 188 | |
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| 189 | !-------------------------------------------------------------------------------- |
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[10338] | 190 | !1.0 Check netcdf version for warning |
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| 191 | clibnc = TRIM(nf90_inq_libvers()) |
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| 192 | IF (ICHAR(clibnc(1:1)) <= 3) THEN |
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| 193 | PRINT *, '==========================================================' |
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| 194 | PRINT *, 'You are using old netcdf library (',TRIM(clibnc),').' |
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| 195 | PRINT *, 'REBUILD_NEMO support of old netcdf library will end soon' |
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| 196 | PRINT *, 'please consider moving to netcdf 4 or higher' |
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| 197 | PRINT *, '==========================================================' |
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| 198 | END IF |
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| 199 | |
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[7683] | 200 | !1.1 Get the namelist path |
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[10338] | 201 | !Determine the number of arguments on the command line |
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| 202 | nargs=iargc() |
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| 203 | !Check that the required argument is present, if it is not then set it to the default value: nam_rebuild |
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| 204 | IF (nargs == 0) THEN |
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| 205 | WRITE(numout,*) |
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| 206 | WRITE(numout,*) 'W A R N I N G : Namelist path not supplied as command line argument. Using default, nam_rebuild.' |
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| 207 | cnampath='nam_rebuild' |
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| 208 | ELSE IF (nargs == 1) THEN |
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| 209 | CALL getarg(1, cnampath) |
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| 210 | ELSE |
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| 211 | WRITE(numerr,*) 'E R R O R ! : Incorrect number of command line arguments. Please supply only' |
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| 212 | WRITE(numerr,*) ' the path to the namelist file, or no arguments to use default value' |
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| 213 | STOP 1 |
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| 214 | END IF |
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[7683] | 215 | |
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[10338] | 216 | ! check presence of namelist |
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| 217 | INQUIRE(FILE=cnampath, EXIST=l_namexist) |
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| 218 | IF (.NOT. l_namexist) THEN |
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| 219 | WRITE(numout,*) |
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| 220 | WRITE(numout,*) 'E R R O R : Namelist '//TRIM(cnampath)//' not present.' |
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| 221 | STOP 42 |
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| 222 | END IF |
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| 223 | |
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[7683] | 224 | !1.2 Read in the namelist |
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| 225 | |
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| 226 | dims(:) = "" |
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[10338] | 227 | nslicesize = 0 |
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[7683] | 228 | deflate_level = 0 |
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[10338] | 229 | OPEN( UNIT=numnam, FILE=TRIM(cnampath), FORM='FORMATTED', STATUS='OLD' ) |
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[7683] | 230 | READ( numnam, nam_rebuild ) |
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| 231 | CLOSE( numnam ) |
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| 232 | IF( .NOT. ALL(dims(:) == "") ) l_findDims = .false. |
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| 233 | |
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[10338] | 234 | !1.3 Set up the filenames and fileids |
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| 235 | |
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[7683] | 236 | ALLOCATE(filenames(ndomain)) |
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| 237 | IF (l_verbose) WRITE(numout,*) 'Rebuilding the following files:' |
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| 238 | DO ifile = 1, ndomain |
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| 239 | WRITE(suffix,'(i4.4)') ifile-1 |
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| 240 | filenames(ifile) = TRIM(filebase)//'_'//TRIM(suffix)//'.nc' |
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| 241 | IF (l_verbose) WRITE(numout,*) TRIM(filenames(ifile)) |
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| 242 | END DO |
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| 243 | ALLOCATE(inncids(ndomain)) |
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| 244 | |
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| 245 | !--------------------------------------------------------------------------- |
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| 246 | !2. Read in the global dimensions from the first input file and set up the output file |
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| 247 | |
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| 248 | CALL check_nf90( nf90_open( TRIM(filenames(1)), nf90_share, ncid ) ) |
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| 249 | CALL check_nf90( nf90_inquire( ncid, ndims, nvars, natts ) ) |
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| 250 | |
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| 251 | !2.0 Read in the total number of processors the file is expecting and check it's correct |
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| 252 | |
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| 253 | CALL check_nf90( nf90_get_att( ncid, nf90_global, 'DOMAIN_number_total', ndomain_file ) ) |
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| 254 | IF( ndomain /= ndomain_file ) THEN |
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| 255 | WRITE(numerr,*) 'ERROR! : number of files to rebuild in file does not agree with namelist' |
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| 256 | WRITE(numerr,*) 'Attribute DOMAIN_number_total is : ', ndomain_file |
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| 257 | WRITE(numerr,*) 'Number of files specified in namelist is: ', ndomain |
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| 258 | STOP 2 |
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| 259 | ENDIF |
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| 260 | |
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| 261 | !2.1 Set up the output file |
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[10338] | 262 | #if defined key_netcdf4 |
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| 263 | CALL check_nf90( nf90_create( TRIM(filebase)//'.nc', nf90_netcdf4, outid, chunksize=fchunksize ) ) |
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| 264 | #else |
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| 265 | CALL check_nf90( nf90_create( TRIM(filebase)//'.nc', nf90_64bit_offset, outid, chunksize=fchunksize ) ) |
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| 266 | #endif |
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[7683] | 267 | |
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| 268 | !2.2 Set up dimensions in output file |
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| 269 | |
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| 270 | !2.2.0 Find out how many dimensions are required to be rebuilt and which ones they are |
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| 271 | CALL check_nf90( nf90_inquire_attribute( ncid, nf90_global, 'DOMAIN_dimensions_ids', xtype, rbdims, attid ) ) |
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| 272 | |
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| 273 | ALLOCATE(rebuild_dims(rbdims)) |
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| 274 | CALL check_nf90( nf90_get_att( ncid, nf90_global, 'DOMAIN_dimensions_ids', rebuild_dims ) ) |
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| 275 | |
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| 276 | ALLOCATE(global_sizes(rbdims)) |
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| 277 | CALL check_nf90( nf90_get_att( ncid, nf90_global, 'DOMAIN_size_global', global_sizes ) ) |
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| 278 | IF (l_verbose) WRITE(numout,*) 'Size of global arrays: ', global_sizes |
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| 279 | |
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| 280 | |
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| 281 | !2.2.1 Copy the dimensions into the output file apart from rebuild_dims() which are dimensioned globally |
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| 282 | ALLOCATE(indimlens(ndims), indimnames(ndims), outdimlens(ndims)) |
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| 283 | CALL check_nf90( nf90_inquire( ncid, unlimitedDimId = unlimitedDimId ) ) |
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| 284 | istop = 0 |
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| 285 | DO idim = 1, ndims |
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| 286 | CALL check_nf90( nf90_inquire_dimension( ncid, idim, dimname, dimlen ) ) |
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| 287 | CALL check_nf90( nf90_get_att( ncid, nf90_global, 'DOMAIN_size_local', local_sizes ) ) |
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| 288 | indimlens(idim) = dimlen |
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| 289 | indimnames(idim) = dimname |
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| 290 | IF (l_findDims) THEN |
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| 291 | IF( idim == rebuild_dims(1) ) THEN |
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| 292 | IF( dimlen == local_sizes(1) ) THEN |
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| 293 | dimlen = global_sizes(1) |
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| 294 | dims(1) = trim(dimname) |
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| 295 | ELSE |
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| 296 | istop = 1 |
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| 297 | ENDIF |
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| 298 | ENDIF |
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| 299 | IF( rbdims > 1 .AND. idim == rebuild_dims(2) ) THEN |
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| 300 | IF( dimlen == local_sizes(2) ) THEN |
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| 301 | dimlen = global_sizes(2) |
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| 302 | dims(2) = trim(dimname) |
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| 303 | ELSE |
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| 304 | istop = 1 |
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| 305 | ENDIF |
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| 306 | ENDIF |
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| 307 | ELSE ! l_findDims = false |
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| 308 | IF( TRIM(dimname) == TRIM(dims(1))) THEN |
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| 309 | dimlen = global_sizes(1) |
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| 310 | rebuild_dims(1) = idim |
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| 311 | ENDIF |
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| 312 | IF( rbdims > 1 .AND. TRIM(dimname) == TRIM(dims(2))) THEN |
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| 313 | dimlen = global_sizes(2) |
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| 314 | rebuild_dims(2) = idim |
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| 315 | ENDIF |
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| 316 | ENDIF |
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| 317 | |
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| 318 | IF( idim == unlimitedDimId ) THEN |
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| 319 | CALL check_nf90( nf90_def_dim( outid, dimname, nf90_unlimited, dimid) ) |
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| 320 | nmax_unlimited = dimlen |
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| 321 | ELSE |
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| 322 | CALL check_nf90( nf90_def_dim( outid, dimname, dimlen, dimid) ) |
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| 323 | ENDIF |
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| 324 | outdimlens(idim) = dimlen |
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| 325 | END DO |
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[10338] | 326 | ! nmax_unlimited is only used for time-slicing so we set it to be at least 1 to |
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[7683] | 327 | ! account for files with no record dimension or zero length record dimension(!) |
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| 328 | nmax_unlimited = max(nmax_unlimited,1) |
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| 329 | |
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| 330 | IF( istop == 1 ) THEN |
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| 331 | WRITE(numerr,*) 'ERROR! : DOMAIN_local_sizes attribute does not match rebuild dimension lengths in the first file' |
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| 332 | WRITE(numerr,*) 'Attribute DOMAIN_local_sizes is : ', local_sizes |
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| 333 | WRITE(numerr,*) 'Dimensions to be rebuilt are of size : ', outdimlens(rebuild_dims(1)), outdimlens(rebuild_dims(2)) |
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| 334 | STOP 3 |
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| 335 | ENDIF |
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| 336 | |
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| 337 | IF (l_findDims) THEN |
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| 338 | IF (l_verbose) WRITE(numout,*) 'Finding rebuild dimensions from the first file...' |
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| 339 | ELSE |
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| 340 | IF (l_verbose) WRITE(numout,*) 'Using rebuild dimensions given in namelist...' |
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| 341 | ENDIF |
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| 342 | |
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| 343 | IF( rbdims > 1 ) THEN |
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| 344 | IF (l_verbose) WRITE(numout,*) 'Rebuilding across dimensions '//TRIM(indimnames(rebuild_dims(1)))// & |
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| 345 | & ' and '//TRIM(indimnames(rebuild_dims(2))) |
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| 346 | ELSE |
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| 347 | IF (l_verbose) WRITE(numout,*) 'Rebuilding across dimension '//TRIM(indimnames(rebuild_dims(1))) |
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| 348 | ENDIF |
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| 349 | |
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| 350 | !2.2.2 Copy the global attributes into the output file, apart from those beginning with DOMAIN_ |
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| 351 | ! Also need to change the file_name attribute and the TimeStamp attribute. |
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| 352 | DO attid = 1, natts |
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| 353 | CALL check_nf90( nf90_inq_attname( ncid, nf90_global, attid, attname ) ) |
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| 354 | IF( INDEX( attname, "DOMAIN_" ) == 1 ) CYCLE |
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| 355 | IF( INDEX( attname, "file_name") == 1 ) CYCLE |
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| 356 | IF( INDEX( attname, "associate_file") == 1 ) CYCLE |
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| 357 | IF (l_verbose) WRITE(numout,*) 'Copying attribute '//TRIM(attname)//' into destination file...' |
---|
| 358 | CALL check_nf90( nf90_copy_att( ncid, nf90_global, attname, outid, nf90_global ) ) |
---|
| 359 | END DO |
---|
| 360 | CALL check_nf90( nf90_put_att( outid, nf90_global, "file_name", TRIM(filebase)//'.nc') ) |
---|
| 361 | IF (l_verbose) WRITE(numout,*) 'Writing new file_name attribute' |
---|
| 362 | CALL DATE_AND_TIME ( date=date, time=time, zone=zone ) |
---|
| 363 | timestamp = date(7:8) // "/" // date(5:6) // "/" // date(1:4) // " " // & |
---|
| 364 | time(1:2) // ":" // time(3:4) // ":" // time(5:6) // " " // & |
---|
| 365 | zone |
---|
| 366 | CALL check_nf90( nf90_put_att( outid, nf90_global, "TimeStamp", timestamp ) ) |
---|
| 367 | IF (l_verbose) WRITE(numout,*) 'Writing new TimeStamp attribute' |
---|
| 368 | |
---|
| 369 | !2.2.3 Copy the variable definitions and attributes into the output file. |
---|
| 370 | ALLOCATE(mdiVals(nvars)) |
---|
| 371 | mdiVals(:)=0 |
---|
| 372 | DO jv = 1, nvars |
---|
| 373 | CALL check_nf90( nf90_inquire_variable( ncid, jv, varname, xtype, ndims, dimids, natts ) ) |
---|
| 374 | ALLOCATE(outdimids(ndims)) |
---|
[10338] | 375 | ALLOCATE(chunksizes(ndims)) |
---|
| 376 | IF( ndims > 0 ) then |
---|
| 377 | DO idim = 1, ndims |
---|
| 378 | outdimids(idim) = dimids(idim) |
---|
| 379 | chunksizes(idim) = outdimlens(dimids(idim)) |
---|
| 380 | cdim='|'//TRIM(indimnames(dimids(idim)))//'|' |
---|
| 381 | |
---|
| 382 | ! trick to find var in a list of suggestion (var0 and var1 : INDEX(|var0|var1|,|var|) |
---|
| 383 | cdimlst='|x|x_grid_T|x_grid_U|x_grid_V|x_grid_W|' |
---|
| 384 | if( INDEX(TRIM(cdimlst),TRIM(cdim)) > 0 ) & |
---|
| 385 | & chunksizes(idim) = min(outdimlens(dimids(idim)), max(nc4_xchunk,1)) |
---|
| 386 | |
---|
| 387 | cdimlst='|y|y_grid_T|y_grid_U|y_grid_V|y_grid_W|' |
---|
| 388 | if( INDEX(TRIM(cdimlst),TRIM(cdim)) > 0 ) & |
---|
| 389 | & chunksizes(idim) = min(outdimlens(dimids(idim)), max(nc4_ychunk,1)) |
---|
| 390 | |
---|
| 391 | cdimlst='|z|deptht|depthu|depthv|depthw|depth|nav_lev|' |
---|
| 392 | if( INDEX(TRIM(cdimlst),TRIM(cdim)) > 0 ) & |
---|
| 393 | & chunksizes(idim) = min(outdimlens(dimids(idim)), max(nc4_zchunk,1)) |
---|
| 394 | |
---|
| 395 | cdimlst='|t|time|time_counter|' |
---|
| 396 | if( INDEX(TRIM(cdimlst),TRIM(cdim)) > 0 ) & |
---|
| 397 | & chunksizes(idim) = min(outdimlens(dimids(idim)), max(nc4_tchunk,1)) |
---|
| 398 | |
---|
| 399 | END DO |
---|
[7683] | 400 | #if defined key_netcdf4 |
---|
[10338] | 401 | CALL check_nf90( nf90_def_var( outid, varname, xtype, outdimids, varid, & |
---|
| 402 | deflate_level=deflate_level ) ) |
---|
| 403 | IF (l_verbose) WRITE(numout,*) 'Dims : ',ndims, outdimids(1:ndims) |
---|
| 404 | IF (l_verbose) WRITE(numout,*) 'names : ',(TRIM(indimnames(dimids(idim)))//' ',idim=1,ndims) |
---|
| 405 | IF (l_verbose) WRITE(numout,*) 'lens : ',(outdimlens(dimids(idim)),idim=1,ndims) |
---|
| 406 | IF (l_verbose) WRITE(numout,*) 'Chunking: ',chunksizes |
---|
| 407 | IF (l_verbose) WRITE(numout,*) 'Deflation : ',deflate_level |
---|
| 408 | IF (l_verbose) WRITE(numout,*) 'Chunk algo: ',chunkalg |
---|
| 409 | CALL check_nf90( nf90_def_var_chunking( outid, varid, chunkalg, & |
---|
| 410 | & chunksizes ) ) |
---|
| 411 | ELSE |
---|
| 412 | CALL check_nf90( nf90_def_var( outid, varname, xtype, outdimids, varid ) ) |
---|
[7683] | 413 | #else |
---|
| 414 | CALL check_nf90( nf90_def_var( outid, varname, xtype, outdimids, varid ) ) |
---|
| 415 | #endif |
---|
[10338] | 416 | ENDIF |
---|
[7683] | 417 | DEALLOCATE(outdimids) |
---|
[10338] | 418 | DEALLOCATE(chunksizes) |
---|
[7683] | 419 | IF (l_verbose) WRITE(numout,*) 'Defining variable '//TRIM(varname)//'...' |
---|
| 420 | IF( natts > 0 ) THEN |
---|
| 421 | DO attid = 1, natts |
---|
| 422 | CALL check_nf90( nf90_inq_attname( ncid, varid, attid, attname ) ) |
---|
| 423 | IF ( attname == "_FillValue" ) THEN |
---|
| 424 | CALL check_nf90( nf90_get_att( ncid, varid, attname, rmdi ) ) |
---|
| 425 | mdiVals(jv)=rmdi |
---|
| 426 | ENDIF |
---|
| 427 | CALL check_nf90( nf90_copy_att( ncid, varid, attname, outid, varid ) ) |
---|
| 428 | END DO |
---|
| 429 | ENDIF |
---|
| 430 | END DO |
---|
| 431 | |
---|
| 432 | !2.3 End definitions in output file and copy 1st file ncid to the inncids array |
---|
| 433 | |
---|
| 434 | CALL check_nf90( nf90_enddef( outid ) ) |
---|
| 435 | inncids(1) = ncid |
---|
| 436 | IF (l_verbose) WRITE(numout,*) 'Finished defining output file.' |
---|
| 437 | |
---|
| 438 | !--------------------------------------------------------------------------- |
---|
| 439 | !3. Read in data from each file for each variable |
---|
| 440 | |
---|
| 441 | !3.1 Open each file and store the ncid in inncids array |
---|
| 442 | |
---|
| 443 | IF (l_verbose) WRITE(numout,*) 'Opening input files...' |
---|
[10338] | 444 | |
---|
| 445 | ! Set a file chunk cache size for the processor-domain files that scales with the number of processors |
---|
| 446 | patchchunk = max(8192, fchunksize/ndomain) |
---|
| 447 | |
---|
| 448 | ! open files |
---|
[7683] | 449 | DO ifile = 2, ndomain |
---|
[10338] | 450 | CALL check_nf90( nf90_open( TRIM(filenames(ifile)), nf90_share, ncid, chunksize=patchchunk ) ) |
---|
[7683] | 451 | inncids(ifile) = ncid |
---|
| 452 | END DO |
---|
| 453 | IF (l_verbose) WRITE(numout,*) 'All input files open.' |
---|
| 454 | |
---|
| 455 | DO jv = 1, nvars |
---|
| 456 | |
---|
| 457 | ValMin = 1.e10 |
---|
| 458 | ValMax = -1.e10 |
---|
| 459 | l_valid = .false. |
---|
| 460 | istop = nf90_noerr |
---|
| 461 | nt = 1 |
---|
[10338] | 462 | ntslice = nmax_unlimited |
---|
| 463 | IF( nslicesize == 0 ) nslicesize = nmax_unlimited |
---|
[7683] | 464 | |
---|
| 465 | !3.2 Inquire variable to find out name and how many dimensions it has |
---|
| 466 | ! and importantly whether it contains the dimensions in rebuild_dims() |
---|
| 467 | |
---|
| 468 | ncid = inncids(1) |
---|
| 469 | CALL check_nf90( nf90_inquire_variable( ncid, jv, varname, xtype, ndims, dimids, natts ) ) |
---|
| 470 | |
---|
| 471 | l_noRebuild = .true. |
---|
| 472 | IF( ANY( dimids(1:ndims) == rebuild_dims(1) )) l_noRebuild = .false. |
---|
| 473 | IF( rbdims > 1 ) THEN |
---|
| 474 | IF( ANY( dimids(1:ndims) == rebuild_dims(2) )) l_noRebuild = .false. |
---|
| 475 | ENDIF |
---|
| 476 | |
---|
[10338] | 477 | !3.2.0 start while loop for time slicing |
---|
[7683] | 478 | |
---|
| 479 | DO WHILE( nt <= nmax_unlimited ) |
---|
| 480 | |
---|
| 481 | IF( ndims > 3 ) THEN |
---|
[10338] | 482 | ntslice = MIN( nslicesize, nmax_unlimited + 1 - nt ) |
---|
[7683] | 483 | ENDIF |
---|
| 484 | |
---|
| 485 | IF (l_noRebuild) THEN |
---|
| 486 | |
---|
[10338] | 487 | IF( nslicesize == nmax_unlimited .OR. ndims <= 3 ) THEN |
---|
[7683] | 488 | IF (l_verbose) WRITE(numout,*) 'Copying data from variable '//TRIM(varname)//'...' |
---|
| 489 | ELSE |
---|
| 490 | IF (l_verbose) WRITE(numout,'(A,I3,A,I3,A)') ' Copying data from variable ' & |
---|
[10338] | 491 | & //TRIM(varname)//' for slices ',nt,' to ',nt+ntslice-1,' ...' |
---|
[7683] | 492 | ENDIF |
---|
| 493 | |
---|
| 494 | !3.2.1 If rebuilding not required then just need to read in variable |
---|
| 495 | ! for copying direct into output file after the OMP (files) loop. |
---|
| 496 | IF( ndims == 0 ) THEN |
---|
| 497 | |
---|
| 498 | SELECT CASE( xtype ) |
---|
| 499 | CASE( NF90_BYTE ) |
---|
| 500 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_0d_i1 ) ) |
---|
| 501 | CASE( NF90_SHORT ) |
---|
| 502 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_0d_i2 ) ) |
---|
| 503 | CASE( NF90_INT ) |
---|
| 504 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_0d_i4 ) ) |
---|
| 505 | CASE( NF90_FLOAT ) |
---|
| 506 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_0d_sp ) ) |
---|
| 507 | CASE( NF90_DOUBLE ) |
---|
| 508 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_0d_dp ) ) |
---|
| 509 | CASE DEFAULT |
---|
| 510 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 511 | STOP 4 |
---|
| 512 | END SELECT |
---|
| 513 | |
---|
| 514 | ELSEIF( ndims == 1 ) THEN |
---|
| 515 | |
---|
| 516 | SELECT CASE( xtype ) |
---|
| 517 | CASE( NF90_BYTE ) |
---|
| 518 | ALLOCATE(globaldata_1d_i1(indimlens(dimids(1)))) |
---|
| 519 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_1d_i1 ) ) |
---|
| 520 | CASE( NF90_SHORT ) |
---|
| 521 | ALLOCATE(globaldata_1d_i2(indimlens(dimids(1)))) |
---|
| 522 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_1d_i2 ) ) |
---|
| 523 | CASE( NF90_INT ) |
---|
| 524 | ALLOCATE(globaldata_1d_i4(indimlens(dimids(1)))) |
---|
| 525 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_1d_i4 ) ) |
---|
| 526 | CASE( NF90_FLOAT ) |
---|
| 527 | ALLOCATE(globaldata_1d_sp(indimlens(dimids(1)))) |
---|
| 528 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_1d_sp ) ) |
---|
| 529 | CASE( NF90_DOUBLE ) |
---|
| 530 | ALLOCATE(globaldata_1d_dp(indimlens(dimids(1)))) |
---|
| 531 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_1d_dp ) ) |
---|
| 532 | CASE DEFAULT |
---|
| 533 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 534 | STOP 4 |
---|
| 535 | END SELECT |
---|
| 536 | |
---|
| 537 | ELSEIF( ndims == 2 ) THEN |
---|
| 538 | |
---|
| 539 | SELECT CASE( xtype ) |
---|
| 540 | CASE( NF90_BYTE ) |
---|
| 541 | ALLOCATE(globaldata_2d_i1(indimlens(dimids(1)),indimlens(dimids(2)))) |
---|
| 542 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_2d_i1 ) ) |
---|
| 543 | CASE( NF90_SHORT ) |
---|
| 544 | ALLOCATE(globaldata_2d_i2(indimlens(dimids(1)),indimlens(dimids(2)))) |
---|
| 545 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_2d_i2 ) ) |
---|
| 546 | CASE( NF90_INT ) |
---|
| 547 | ALLOCATE(globaldata_2d_i4(indimlens(dimids(1)),indimlens(dimids(2)))) |
---|
| 548 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_2d_i4 ) ) |
---|
| 549 | CASE( NF90_FLOAT ) |
---|
| 550 | ALLOCATE(globaldata_2d_sp(indimlens(dimids(1)),indimlens(dimids(2)))) |
---|
| 551 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_2d_sp ) ) |
---|
| 552 | CASE( NF90_DOUBLE ) |
---|
| 553 | ALLOCATE(globaldata_2d_dp(indimlens(dimids(1)),indimlens(dimids(2)))) |
---|
| 554 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_2d_dp ) ) |
---|
| 555 | CASE DEFAULT |
---|
| 556 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 557 | STOP 4 |
---|
| 558 | END SELECT |
---|
| 559 | |
---|
| 560 | ELSEIF( ndims == 3 ) THEN |
---|
| 561 | |
---|
| 562 | SELECT CASE( xtype ) |
---|
| 563 | CASE( NF90_BYTE ) |
---|
| 564 | ALLOCATE(globaldata_3d_i1(indimlens(dimids(1)),indimlens(dimids(2)), & |
---|
| 565 | & indimlens(dimids(3)))) |
---|
| 566 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_3d_i1 ) ) |
---|
| 567 | CASE( NF90_SHORT ) |
---|
| 568 | ALLOCATE(globaldata_3d_i2(indimlens(dimids(1)),indimlens(dimids(2)), & |
---|
| 569 | & indimlens(dimids(3)))) |
---|
| 570 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_3d_i2 ) ) |
---|
| 571 | CASE( NF90_INT ) |
---|
| 572 | ALLOCATE(globaldata_3d_i4(indimlens(dimids(1)),indimlens(dimids(2)), & |
---|
| 573 | & indimlens(dimids(3)))) |
---|
| 574 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_3d_i4 ) ) |
---|
| 575 | CASE( NF90_FLOAT ) |
---|
| 576 | ALLOCATE(globaldata_3d_sp(indimlens(dimids(1)),indimlens(dimids(2)), & |
---|
| 577 | & indimlens(dimids(3)))) |
---|
| 578 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_3d_sp ) ) |
---|
| 579 | CASE( NF90_DOUBLE ) |
---|
| 580 | ALLOCATE(globaldata_3d_dp(indimlens(dimids(1)),indimlens(dimids(2)), & |
---|
| 581 | & indimlens(dimids(3)))) |
---|
| 582 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_3d_dp ) ) |
---|
| 583 | CASE DEFAULT |
---|
| 584 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 585 | STOP 4 |
---|
| 586 | END SELECT |
---|
| 587 | |
---|
| 588 | ELSEIF( ndims == 4 ) THEN |
---|
| 589 | |
---|
| 590 | SELECT CASE( xtype ) |
---|
| 591 | CASE( NF90_BYTE ) |
---|
| 592 | ALLOCATE(globaldata_4d_i1(indimlens(dimids(1)),indimlens(dimids(2)), & |
---|
[10338] | 593 | & indimlens(dimids(3)),ntslice)) |
---|
[7683] | 594 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_4d_i1, start=(/1,1,1,nt/) ) ) |
---|
| 595 | CASE( NF90_SHORT ) |
---|
| 596 | ALLOCATE(globaldata_4d_i2(indimlens(dimids(1)),indimlens(dimids(2)), & |
---|
[10338] | 597 | & indimlens(dimids(3)),ntslice)) |
---|
[7683] | 598 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_4d_i2, start=(/1,1,1,nt/) ) ) |
---|
| 599 | CASE( NF90_INT ) |
---|
| 600 | ALLOCATE(globaldata_4d_i4(indimlens(dimids(1)),indimlens(dimids(2)), & |
---|
[10338] | 601 | & indimlens(dimids(3)),ntslice)) |
---|
[7683] | 602 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_4d_i4, start=(/1,1,1,nt/) ) ) |
---|
| 603 | CASE( NF90_FLOAT ) |
---|
| 604 | ALLOCATE(globaldata_4d_sp(indimlens(dimids(1)),indimlens(dimids(2)), & |
---|
[10338] | 605 | & indimlens(dimids(3)),ntslice)) |
---|
[7683] | 606 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_4d_sp, start=(/1,1,1,nt/) ) ) |
---|
| 607 | CASE( NF90_DOUBLE ) |
---|
| 608 | ALLOCATE(globaldata_4d_dp(indimlens(dimids(1)),indimlens(dimids(2)), & |
---|
[10338] | 609 | & indimlens(dimids(3)),ntslice)) |
---|
[7683] | 610 | CALL check_nf90( nf90_get_var( ncid, jv, globaldata_4d_dp, start=(/1,1,1,nt/) ) ) |
---|
| 611 | CASE DEFAULT |
---|
| 612 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 613 | STOP 4 |
---|
| 614 | END SELECT |
---|
| 615 | |
---|
| 616 | ENDIF |
---|
| 617 | |
---|
| 618 | ELSE ! l_noRebuild = .false. |
---|
| 619 | |
---|
| 620 | !3.2.2 For variables that require rebuilding we need to read in from all ndomain files |
---|
| 621 | ! Here we allocate global variables ahead of looping over files |
---|
[10338] | 622 | IF( nslicesize == nmax_unlimited .OR. ndims <= 3 ) THEN |
---|
[7683] | 623 | IF (l_verbose) WRITE(numout,*) 'Rebuilding data from variable '//TRIM(varname)//'...' |
---|
| 624 | ELSE |
---|
| 625 | IF (l_verbose) WRITE(numout,'(A,I3,A,I3,A)') ' Rebuilding data from variable ' & |
---|
[10338] | 626 | & //TRIM(varname)//' for slices ',nt,' to ',nt+ntslice-1,' ...' |
---|
[7683] | 627 | ENDIF |
---|
| 628 | IF( ndims == 1 ) THEN |
---|
| 629 | |
---|
| 630 | SELECT CASE( xtype ) |
---|
| 631 | CASE( NF90_BYTE ) |
---|
| 632 | ALLOCATE(globaldata_1d_i1(outdimlens(dimids(1)))) |
---|
| 633 | IF (l_maskout) globaldata_1d_i1(:)=mdiVals(jv) |
---|
| 634 | CASE( NF90_SHORT ) |
---|
| 635 | ALLOCATE(globaldata_1d_i2(outdimlens(dimids(1)))) |
---|
| 636 | IF (l_maskout) globaldata_1d_i2(:)=mdiVals(jv) |
---|
| 637 | CASE( NF90_INT ) |
---|
| 638 | ALLOCATE(globaldata_1d_i4(outdimlens(dimids(1)))) |
---|
| 639 | IF (l_maskout) globaldata_1d_i4(:)=mdiVals(jv) |
---|
| 640 | CASE( NF90_FLOAT ) |
---|
| 641 | ALLOCATE(globaldata_1d_sp(outdimlens(dimids(1)))) |
---|
| 642 | IF (l_maskout) globaldata_1d_sp(:)=mdiVals(jv) |
---|
| 643 | CASE( NF90_DOUBLE ) |
---|
| 644 | ALLOCATE(globaldata_1d_dp(outdimlens(dimids(1)))) |
---|
| 645 | IF (l_maskout) globaldata_1d_dp(:)=mdiVals(jv) |
---|
| 646 | CASE DEFAULT |
---|
| 647 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 648 | STOP 4 |
---|
| 649 | END SELECT |
---|
| 650 | |
---|
| 651 | ELSEIF( ndims == 2 ) THEN |
---|
| 652 | |
---|
| 653 | SELECT CASE( xtype ) |
---|
| 654 | CASE( NF90_BYTE ) |
---|
| 655 | ALLOCATE(globaldata_2d_i1(outdimlens(dimids(1)),outdimlens(dimids(2)))) |
---|
| 656 | IF (l_maskout) globaldata_2d_i1(:,:)=mdiVals(jv) |
---|
| 657 | CASE( NF90_SHORT ) |
---|
| 658 | ALLOCATE(globaldata_2d_i2(outdimlens(dimids(1)),outdimlens(dimids(2)))) |
---|
| 659 | IF (l_maskout) globaldata_2d_i2(:,:)=mdiVals(jv) |
---|
| 660 | CASE( NF90_INT ) |
---|
| 661 | ALLOCATE(globaldata_2d_i4(outdimlens(dimids(1)),outdimlens(dimids(2)))) |
---|
| 662 | IF (l_maskout) globaldata_2d_i4(:,:)=mdiVals(jv) |
---|
| 663 | CASE( NF90_FLOAT ) |
---|
| 664 | ALLOCATE(globaldata_2d_sp(outdimlens(dimids(1)),outdimlens(dimids(2)))) |
---|
| 665 | IF (l_maskout) globaldata_2d_sp(:,:)=mdiVals(jv) |
---|
| 666 | CASE( NF90_DOUBLE ) |
---|
| 667 | ALLOCATE(globaldata_2d_dp(outdimlens(dimids(1)),outdimlens(dimids(2)))) |
---|
| 668 | IF (l_maskout) globaldata_2d_dp(:,:)=mdiVals(jv) |
---|
| 669 | CASE DEFAULT |
---|
| 670 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 671 | STOP 4 |
---|
| 672 | END SELECT |
---|
| 673 | |
---|
| 674 | ELSEIF( ndims == 3 ) THEN |
---|
| 675 | |
---|
| 676 | SELECT CASE( xtype ) |
---|
| 677 | CASE( NF90_BYTE ) |
---|
| 678 | ALLOCATE(globaldata_3d_i1(outdimlens(dimids(1)),outdimlens(dimids(2)), & |
---|
| 679 | & outdimlens(dimids(3)))) |
---|
| 680 | IF (l_maskout) globaldata_3d_i1(:,:,:)=mdiVals(jv) |
---|
| 681 | CASE( NF90_SHORT ) |
---|
| 682 | ALLOCATE(globaldata_3d_i2(outdimlens(dimids(1)),outdimlens(dimids(2)), & |
---|
| 683 | & outdimlens(dimids(3)))) |
---|
| 684 | IF (l_maskout) globaldata_3d_i2(:,:,:)=mdiVals(jv) |
---|
| 685 | CASE( NF90_INT ) |
---|
| 686 | ALLOCATE(globaldata_3d_i4(outdimlens(dimids(1)),outdimlens(dimids(2)), & |
---|
| 687 | & outdimlens(dimids(3)))) |
---|
| 688 | IF (l_maskout) globaldata_3d_i4(:,:,:)=mdiVals(jv) |
---|
| 689 | CASE( NF90_FLOAT ) |
---|
| 690 | ALLOCATE(globaldata_3d_sp(outdimlens(dimids(1)),outdimlens(dimids(2)), & |
---|
| 691 | & outdimlens(dimids(3)))) |
---|
| 692 | IF (l_maskout) globaldata_3d_sp(:,:,:)=mdiVals(jv) |
---|
| 693 | CASE( NF90_DOUBLE ) |
---|
| 694 | ALLOCATE(globaldata_3d_dp(outdimlens(dimids(1)),outdimlens(dimids(2)), & |
---|
| 695 | & outdimlens(dimids(3)))) |
---|
| 696 | IF (l_maskout) globaldata_3d_dp(:,:,:)=mdiVals(jv) |
---|
| 697 | CASE DEFAULT |
---|
| 698 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 699 | STOP 4 |
---|
| 700 | END SELECT |
---|
| 701 | |
---|
| 702 | ELSEIF( ndims == 4 ) THEN |
---|
| 703 | |
---|
| 704 | SELECT CASE( xtype ) |
---|
| 705 | CASE( NF90_BYTE ) |
---|
| 706 | ALLOCATE(globaldata_4d_i1(outdimlens(dimids(1)),outdimlens(dimids(2)), & |
---|
[10338] | 707 | & outdimlens(dimids(3)),ntslice)) |
---|
[7683] | 708 | IF (l_maskout) globaldata_4d_i1(:,:,:,:)=mdiVals(jv) |
---|
| 709 | CASE( NF90_SHORT ) |
---|
| 710 | ALLOCATE(globaldata_4d_i2(outdimlens(dimids(1)),outdimlens(dimids(2)), & |
---|
[10338] | 711 | & outdimlens(dimids(3)),ntslice)) |
---|
[7683] | 712 | IF (l_maskout) globaldata_4d_i2(:,:,:,:)=mdiVals(jv) |
---|
| 713 | CASE( NF90_INT ) |
---|
| 714 | ALLOCATE(globaldata_4d_i4(outdimlens(dimids(1)),outdimlens(dimids(2)), & |
---|
[10338] | 715 | & outdimlens(dimids(3)),ntslice)) |
---|
[7683] | 716 | IF (l_maskout) globaldata_4d_i4(:,:,:,:)=mdiVals(jv) |
---|
| 717 | CASE( NF90_FLOAT ) |
---|
| 718 | ALLOCATE(globaldata_4d_sp(outdimlens(dimids(1)),outdimlens(dimids(2)), & |
---|
[10338] | 719 | & outdimlens(dimids(3)),ntslice)) |
---|
[7683] | 720 | IF (l_maskout) globaldata_4d_sp(:,:,:,:)=mdiVals(jv) |
---|
| 721 | CASE( NF90_DOUBLE ) |
---|
| 722 | ALLOCATE(globaldata_4d_dp(outdimlens(dimids(1)),outdimlens(dimids(2)), & |
---|
[10338] | 723 | & outdimlens(dimids(3)),ntslice)) |
---|
[7683] | 724 | IF (l_maskout) globaldata_4d_dp(:,:,:,:)=mdiVals(jv) |
---|
| 725 | CASE DEFAULT |
---|
| 726 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 727 | STOP 4 |
---|
| 728 | END SELECT |
---|
| 729 | ELSE |
---|
| 730 | WRITE(numerr,*) 'ERROR! : A netcdf variable has more than 4 dimensions which is not taken into account' |
---|
| 731 | STOP 4 |
---|
| 732 | ENDIF |
---|
| 733 | |
---|
| 734 | !$OMP PARALLEL DO DEFAULT(NONE) & |
---|
| 735 | !$OMP& PRIVATE(ifile,ncid,xtype,start_pos,local_sizes,InMin,InMax,natts, & |
---|
| 736 | !$OMP& ndims,attid,attname,dimids,idim,dimname,dimlen,unlimitedDimId, & |
---|
| 737 | !$OMP& halo_start,halo_end,idomain,jdomain,rdomain,di,dj,dr, & |
---|
| 738 | !$OMP& localdata_1d_i2,localdata_1d_i4,localdata_1d_sp,localdata_1d_dp, & |
---|
| 739 | !$OMP& localdata_2d_i2,localdata_2d_i4,localdata_2d_sp,localdata_2d_dp, & |
---|
| 740 | !$OMP& localdata_3d_i2,localdata_3d_i4,localdata_3d_sp,localdata_3d_dp, & |
---|
| 741 | !$OMP& localdata_4d_i2,localdata_4d_i4,localdata_4d_sp,localdata_4d_dp, & |
---|
| 742 | !$OMP& localdata_1d_i1,localdata_2d_i1,localdata_3d_i1,localdata_4d_i1) & |
---|
| 743 | !$OMP& SHARED(jv,nvars,varname,filenames,ValMin,ValMax,indimlens,outdimlens,rbdims, & |
---|
[10338] | 744 | !$OMP& ndomain,outid,fchunksize,istop,l_valid,nthreads,inncids,rebuild_dims, & |
---|
[7683] | 745 | !$OMP& globaldata_1d_i2,globaldata_1d_i4,globaldata_1d_sp,globaldata_1d_dp, & |
---|
| 746 | !$OMP& globaldata_2d_i2,globaldata_2d_i4,globaldata_2d_sp,globaldata_2d_dp, & |
---|
| 747 | !$OMP& globaldata_3d_i2,globaldata_3d_i4,globaldata_3d_sp,globaldata_3d_dp, & |
---|
| 748 | !$OMP& globaldata_4d_i2,globaldata_4d_i4,globaldata_4d_sp,globaldata_4d_dp, & |
---|
| 749 | !$OMP& globaldata_1d_i1,globaldata_2d_i1,globaldata_3d_i1,globaldata_4d_i1, & |
---|
[10338] | 750 | !$OMP& ntslice,nt,nmax_unlimited,indimnames,dims,patchchunk) |
---|
[7683] | 751 | |
---|
| 752 | DO ifile = 1, ndomain |
---|
| 753 | |
---|
| 754 | ncid = inncids(ifile) |
---|
| 755 | !$OMP CRITICAL |
---|
| 756 | CALL check_nf90( nf90_get_att( ncid, nf90_global, 'DOMAIN_size_local', local_sizes ), istop ) |
---|
| 757 | CALL check_nf90( nf90_get_att( ncid, nf90_global, 'DOMAIN_position_first', start_pos ), istop ) |
---|
| 758 | CALL check_nf90( nf90_get_att( ncid, nf90_global, 'DOMAIN_halo_size_start', halo_start ), istop ) |
---|
| 759 | CALL check_nf90( nf90_get_att( ncid, nf90_global, 'DOMAIN_halo_size_end', halo_end ), istop ) |
---|
| 760 | CALL check_nf90( nf90_inquire_variable( ncid, jv, varname, xtype, ndims, dimids, natts ), istop ) |
---|
| 761 | CALL check_nf90( nf90_inquire( ncid, unlimitedDimId = unlimitedDimId ), istop ) |
---|
| 762 | !$OMP END CRITICAL |
---|
| 763 | |
---|
| 764 | ! set defaults for rebuilding so that i is 1st, j 2nd |
---|
| 765 | di=1 |
---|
| 766 | dj=2 |
---|
| 767 | |
---|
| 768 | IF( rbdims == 1 ) THEN |
---|
| 769 | ! override defaults above and set other variables |
---|
| 770 | start_pos(2) = 1 |
---|
| 771 | local_sizes(2) = outdimlens(3-dimids(2)) |
---|
| 772 | halo_end(2) = 0 |
---|
| 773 | halo_start(2) = 0 |
---|
| 774 | di=rebuild_dims(1) |
---|
| 775 | dj=3-di |
---|
| 776 | ENDIF |
---|
| 777 | |
---|
| 778 | !3.3.1 Generate local domain interior sizes from local_sizes and halo sizes |
---|
| 779 | ! idomain defines the 1st and last interior points in the i direction and |
---|
| 780 | ! jdomain defines the 1st and last interior points in the j direction |
---|
| 781 | |
---|
| 782 | idomain(1) = 1 + halo_start(di) |
---|
| 783 | idomain(2) = local_sizes(di) - halo_end(di) |
---|
| 784 | jdomain(1) = 1 + halo_start(dj) |
---|
| 785 | jdomain(2) = local_sizes(dj) - halo_end(dj) |
---|
| 786 | |
---|
| 787 | !3.3.2 For rbdims or more dimensions put the data array from this input file into the correct |
---|
| 788 | ! part of the output data array. Assume the first dimensions are those to be rebuilt. |
---|
| 789 | |
---|
| 790 | IF( ndims == 1 ) THEN |
---|
| 791 | |
---|
| 792 | IF( rebuild_dims(1) == 1 ) THEN |
---|
| 793 | dr = di |
---|
| 794 | rdomain = idomain |
---|
| 795 | ELSE |
---|
| 796 | dr = dj |
---|
| 797 | rdomain = jdomain |
---|
| 798 | ENDIF |
---|
| 799 | |
---|
| 800 | SELECT CASE( xtype ) |
---|
| 801 | CASE( NF90_BYTE ) |
---|
| 802 | ALLOCATE(localdata_1d_i1(local_sizes(dr))) |
---|
| 803 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_1d_i1 ), istop ) |
---|
| 804 | DO jr = rdomain(1), rdomain(2) |
---|
| 805 | globaldata_1d_i1(start_pos(dr) + jr - 1) = localdata_1d_i1(jr) |
---|
| 806 | END DO |
---|
| 807 | DEALLOCATE(localdata_1d_i1) |
---|
| 808 | CASE( NF90_SHORT ) |
---|
| 809 | ALLOCATE(localdata_1d_i2(local_sizes(dr))) |
---|
| 810 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_1d_i2 ), istop ) |
---|
| 811 | DO jr = rdomain(1), rdomain(2) |
---|
| 812 | globaldata_1d_i2(start_pos(dr) + jr - 1) = localdata_1d_i2(jr) |
---|
| 813 | END DO |
---|
| 814 | DEALLOCATE(localdata_1d_i2) |
---|
| 815 | CASE( NF90_INT ) |
---|
| 816 | ALLOCATE(localdata_1d_i4(local_sizes(dr))) |
---|
| 817 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_1d_i4 ), istop ) |
---|
| 818 | DO jr = rdomain(1), rdomain(2) |
---|
| 819 | globaldata_1d_i4(start_pos(dr) + jr - 1) = localdata_1d_i4(jr) |
---|
| 820 | END DO |
---|
| 821 | DEALLOCATE(localdata_1d_i4) |
---|
| 822 | CASE( NF90_FLOAT ) |
---|
| 823 | ALLOCATE(localdata_1d_sp(local_sizes(dr))) |
---|
| 824 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_1d_sp ), istop ) |
---|
| 825 | DO jr = rdomain(1), rdomain(2) |
---|
| 826 | globaldata_1d_sp(start_pos(dr) + jr - 1) = localdata_1d_sp(jr) |
---|
| 827 | END DO |
---|
| 828 | DEALLOCATE(localdata_1d_sp) |
---|
| 829 | CASE( NF90_DOUBLE ) |
---|
| 830 | ALLOCATE(localdata_1d_dp(local_sizes(dr))) |
---|
| 831 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_1d_dp ), istop ) |
---|
| 832 | DO jr = rdomain(1), rdomain(2) |
---|
| 833 | globaldata_1d_dp(start_pos(dr) + jr - 1) = localdata_1d_dp(jr) |
---|
| 834 | END DO |
---|
| 835 | DEALLOCATE(localdata_1d_dp) |
---|
| 836 | CASE DEFAULT |
---|
| 837 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 838 | istop = istop + 1 |
---|
| 839 | END SELECT |
---|
| 840 | |
---|
| 841 | ELSEIF( ndims == 2 ) THEN |
---|
| 842 | |
---|
| 843 | SELECT CASE( xtype ) |
---|
| 844 | CASE( NF90_BYTE ) |
---|
| 845 | ALLOCATE(localdata_2d_i1(local_sizes(di),local_sizes(dj))) |
---|
| 846 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_2d_i1 ), istop ) |
---|
| 847 | DO jj = jdomain(1), jdomain(2) |
---|
| 848 | DO ji = idomain(1), idomain(2) |
---|
| 849 | globaldata_2d_i1(start_pos(di) + ji - 1, start_pos(dj) + jj - 1) = localdata_2d_i1(ji,jj) |
---|
| 850 | END DO |
---|
| 851 | END DO |
---|
| 852 | DEALLOCATE(localdata_2d_i1) |
---|
| 853 | CASE( NF90_SHORT ) |
---|
| 854 | ALLOCATE(localdata_2d_i2(local_sizes(di),local_sizes(dj))) |
---|
| 855 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_2d_i2 ), istop ) |
---|
| 856 | DO jj = jdomain(1), jdomain(2) |
---|
| 857 | DO ji = idomain(1), idomain(2) |
---|
| 858 | globaldata_2d_i2(start_pos(di) + ji - 1, start_pos(dj) + jj - 1) = localdata_2d_i2(ji,jj) |
---|
| 859 | END DO |
---|
| 860 | END DO |
---|
| 861 | DEALLOCATE(localdata_2d_i2) |
---|
| 862 | CASE( NF90_INT ) |
---|
| 863 | ALLOCATE(localdata_2d_i4(local_sizes(di),local_sizes(dj))) |
---|
| 864 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_2d_i4 ), istop ) |
---|
| 865 | DO jj = jdomain(1), jdomain(2) |
---|
| 866 | DO ji = idomain(1), idomain(2) |
---|
| 867 | globaldata_2d_i4(start_pos(di) + ji - 1, start_pos(dj) + jj - 1) = localdata_2d_i4(ji,jj) |
---|
| 868 | END DO |
---|
| 869 | END DO |
---|
| 870 | DEALLOCATE(localdata_2d_i4) |
---|
| 871 | CASE( NF90_FLOAT ) |
---|
| 872 | ALLOCATE(localdata_2d_sp(local_sizes(di),local_sizes(dj))) |
---|
| 873 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_2d_sp ), istop ) |
---|
| 874 | DO jj = jdomain(1), jdomain(2) |
---|
| 875 | DO ji = idomain(1), idomain(2) |
---|
| 876 | globaldata_2d_sp(start_pos(di) + ji - 1, start_pos(dj) + jj - 1) = localdata_2d_sp(ji,jj) |
---|
| 877 | END DO |
---|
| 878 | END DO |
---|
| 879 | DEALLOCATE(localdata_2d_sp) |
---|
| 880 | CASE( NF90_DOUBLE ) |
---|
| 881 | ALLOCATE(localdata_2d_dp(local_sizes(di),local_sizes(dj))) |
---|
| 882 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_2d_dp ), istop ) |
---|
| 883 | DO jj = jdomain(1), jdomain(2) |
---|
| 884 | DO ji = idomain(1), idomain(2) |
---|
| 885 | globaldata_2d_dp(start_pos(di) + ji - 1, start_pos(dj) + jj - 1) = localdata_2d_dp(ji,jj) |
---|
| 886 | END DO |
---|
| 887 | END DO |
---|
| 888 | DEALLOCATE(localdata_2d_dp) |
---|
| 889 | CASE DEFAULT |
---|
| 890 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 891 | istop = istop + 1 |
---|
| 892 | END SELECT |
---|
| 893 | |
---|
| 894 | ELSEIF( ndims == 3 ) THEN |
---|
| 895 | |
---|
| 896 | SELECT CASE( xtype ) |
---|
| 897 | CASE( NF90_BYTE ) |
---|
| 898 | ALLOCATE(localdata_3d_i1(local_sizes(di),local_sizes(dj),indimlens(dimids(3)))) |
---|
| 899 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_3d_i1 ), istop ) |
---|
| 900 | !$OMP PARALLEL DO DEFAULT(NONE) PRIVATE(ji,jj,jk) & |
---|
| 901 | !$OMP& SHARED(idomain,jdomain,indimlens,dimids,start_pos,globaldata_3d_i1,localdata_3d_i1,di,dj) |
---|
| 902 | DO jk = 1, indimlens(dimids(3)) |
---|
| 903 | DO jj = jdomain(1), jdomain(2) |
---|
| 904 | DO ji = idomain(1), idomain(2) |
---|
| 905 | globaldata_3d_i1(start_pos(di) + ji - 1, start_pos(dj) + jj - 1, jk) = localdata_3d_i1(ji,jj,jk) |
---|
| 906 | END DO |
---|
| 907 | END DO |
---|
| 908 | END DO |
---|
| 909 | !$OMP END PARALLEL DO |
---|
| 910 | DEALLOCATE(localdata_3d_i1) |
---|
| 911 | CASE( NF90_SHORT ) |
---|
| 912 | ALLOCATE(localdata_3d_i2(local_sizes(di),local_sizes(dj),indimlens(dimids(3)))) |
---|
| 913 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_3d_i2 ), istop ) |
---|
| 914 | !$OMP PARALLEL DO DEFAULT(NONE) PRIVATE(ji,jj,jk) & |
---|
| 915 | !$OMP& SHARED(idomain,jdomain,indimlens,dimids,start_pos,globaldata_3d_i2,localdata_3d_i2,di,dj) |
---|
| 916 | DO jk = 1, indimlens(dimids(3)) |
---|
| 917 | DO jj = jdomain(1), jdomain(2) |
---|
| 918 | DO ji = idomain(1), idomain(2) |
---|
| 919 | globaldata_3d_i2(start_pos(di) + ji - 1, start_pos(dj) + jj - 1, jk) = localdata_3d_i2(ji,jj,jk) |
---|
| 920 | END DO |
---|
| 921 | END DO |
---|
| 922 | END DO |
---|
| 923 | !$OMP END PARALLEL DO |
---|
| 924 | DEALLOCATE(localdata_3d_i2) |
---|
| 925 | CASE( NF90_INT ) |
---|
| 926 | ALLOCATE(localdata_3d_i4(local_sizes(di),local_sizes(dj),indimlens(dimids(3)))) |
---|
| 927 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_3d_i4 ), istop ) |
---|
| 928 | !$OMP PARALLEL DO DEFAULT(NONE) PRIVATE(ji,jj,jk) & |
---|
| 929 | !$OMP& SHARED(idomain,jdomain,indimlens,dimids,start_pos,globaldata_3d_i4,localdata_3d_i4,di,dj) |
---|
| 930 | DO jk = 1, indimlens(dimids(3)) |
---|
| 931 | DO jj = jdomain(1), jdomain(2) |
---|
| 932 | DO ji = idomain(1), idomain(2) |
---|
| 933 | globaldata_3d_i4(start_pos(di) + ji - 1, start_pos(dj) + jj - 1, jk) = localdata_3d_i4(ji,jj,jk) |
---|
| 934 | END DO |
---|
| 935 | END DO |
---|
| 936 | END DO |
---|
| 937 | !$OMP END PARALLEL DO |
---|
| 938 | DEALLOCATE(localdata_3d_i4) |
---|
| 939 | CASE( NF90_FLOAT ) |
---|
| 940 | ! TG: This if statement is added to check if the 1st dimension is the corners (for lon_bounds) variables |
---|
| 941 | ! TG: Had to add the unsatisfactory check for 'lon' as it failed for diaptr files |
---|
| 942 | ! TG: Would like to find a better assumption for this. |
---|
| 943 | IF ( trim(indimnames(dimids(1))) /= dims(1) .AND. indimnames(dimids(1)) .NE. 'lon' ) THEN |
---|
| 944 | ALLOCATE(localdata_3d_sp(indimlens(dimids(1)),local_sizes(di),local_sizes(dj))) |
---|
| 945 | WRITE(*,*) 'test', ifile, jv, indimlens(dimids(1)),local_sizes(di),local_sizes(dj) |
---|
| 946 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_3d_sp ), istop ) |
---|
| 947 | WRITE(*,*) 'test2' |
---|
| 948 | DO jj = jdomain(1), jdomain(2) |
---|
| 949 | DO ji = idomain(1), idomain(2) |
---|
| 950 | DO jk = 1, indimlens(dimids(1)) |
---|
| 951 | globaldata_3d_sp(jk, start_pos(di) + ji - 1, start_pos(dj) + jj - 1) = localdata_3d_sp(jk,ji,jj) |
---|
| 952 | END DO |
---|
| 953 | END DO |
---|
| 954 | END DO |
---|
| 955 | ELSE |
---|
| 956 | ALLOCATE(localdata_3d_sp(local_sizes(di),local_sizes(dj),indimlens(dimids(3)))) |
---|
| 957 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_3d_sp ), istop ) |
---|
| 958 | !$OMP PARALLEL DO DEFAULT(NONE) PRIVATE(ji,jj,jk) & |
---|
| 959 | !$OMP& SHARED(idomain,jdomain,indimlens,dimids,start_pos,globaldata_3d_sp,localdata_3d_sp,di,dj) |
---|
| 960 | DO jk = 1, indimlens(dimids(3)) |
---|
| 961 | DO jj = jdomain(1), jdomain(2) |
---|
| 962 | DO ji = idomain(1), idomain(2) |
---|
| 963 | globaldata_3d_sp(start_pos(di) + ji - 1, start_pos(dj) + jj - 1, jk) = localdata_3d_sp(ji,jj,jk) |
---|
| 964 | END DO |
---|
| 965 | END DO |
---|
| 966 | END DO |
---|
| 967 | !$OMP END PARALLEL DO |
---|
| 968 | ENDIF |
---|
| 969 | DEALLOCATE(localdata_3d_sp) |
---|
| 970 | CASE( NF90_DOUBLE ) |
---|
| 971 | IF ( trim(indimnames(dimids(1))) /= dims(1) ) THEN |
---|
| 972 | ALLOCATE(localdata_3d_dp(indimlens(dimids(1)),local_sizes(di),local_sizes(dj))) |
---|
| 973 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_3d_dp ), istop ) |
---|
| 974 | DO jj = jdomain(1), jdomain(2) |
---|
| 975 | DO ji = idomain(1), idomain(2) |
---|
| 976 | DO jk = 1, indimlens(dimids(1)) |
---|
| 977 | globaldata_3d_dp(jk, start_pos(di) + ji - 1, start_pos(dj) + jj - 1) = localdata_3d_dp(jk,ji,jj) |
---|
| 978 | END DO |
---|
| 979 | END DO |
---|
| 980 | END DO |
---|
| 981 | ELSE |
---|
| 982 | ALLOCATE(localdata_3d_dp(local_sizes(di),local_sizes(dj),indimlens(dimids(3)))) |
---|
| 983 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_3d_dp ), istop ) |
---|
| 984 | !$OMP PARALLEL DO DEFAULT(NONE) PRIVATE(ji,jj,jk) & |
---|
| 985 | !$OMP& SHARED(idomain,jdomain,indimlens,dimids,start_pos,globaldata_3d_dp,localdata_3d_dp,di,dj) |
---|
| 986 | DO jk = 1, indimlens(dimids(3)) |
---|
| 987 | DO jj = jdomain(1), jdomain(2) |
---|
| 988 | DO ji = idomain(1), idomain(2) |
---|
| 989 | globaldata_3d_dp(start_pos(di) + ji - 1, start_pos(dj) + jj - 1, jk) = localdata_3d_dp(ji,jj,jk) |
---|
| 990 | END DO |
---|
| 991 | END DO |
---|
| 992 | END DO |
---|
| 993 | !$OMP END PARALLEL DO |
---|
| 994 | ENDIF |
---|
| 995 | DEALLOCATE(localdata_3d_dp) |
---|
| 996 | CASE DEFAULT |
---|
| 997 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 998 | istop = istop + 1 |
---|
| 999 | END SELECT |
---|
| 1000 | |
---|
| 1001 | ELSEIF (ndims == 4) THEN |
---|
| 1002 | |
---|
| 1003 | SELECT CASE( xtype ) |
---|
| 1004 | CASE( NF90_BYTE ) |
---|
| 1005 | ALLOCATE(localdata_4d_i1(local_sizes(di),local_sizes(dj), & |
---|
[10338] | 1006 | & indimlens(dimids(3)),ntslice)) |
---|
[7683] | 1007 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_4d_i1, start=(/1,1,1,nt/) ), istop ) |
---|
| 1008 | !$OMP PARALLEL DEFAULT(NONE) PRIVATE(ji,jj,jk,jl) & |
---|
[10338] | 1009 | !$OMP& SHARED(idomain,jdomain,indimlens,dimids,start_pos,globaldata_4d_i1,localdata_4d_i1,di,dj,nt,ntslice) |
---|
| 1010 | DO jl = 1, ntslice |
---|
[7683] | 1011 | !$OMP DO |
---|
| 1012 | DO jk = 1, indimlens(dimids(3)) |
---|
| 1013 | DO jj = jdomain(1), jdomain(2) |
---|
| 1014 | DO ji = idomain(1), idomain(2) |
---|
| 1015 | globaldata_4d_i1(start_pos(di) + ji - 1, start_pos(dj) + jj - 1, jk, jl) = localdata_4d_i1(ji,jj,jk,jl) |
---|
| 1016 | END DO |
---|
| 1017 | END DO |
---|
| 1018 | END DO |
---|
| 1019 | !$OMP END DO nowait |
---|
| 1020 | END DO |
---|
| 1021 | !$OMP END PARALLEL |
---|
| 1022 | DEALLOCATE(localdata_4d_i1) |
---|
| 1023 | CASE( NF90_SHORT ) |
---|
| 1024 | ALLOCATE(localdata_4d_i2(local_sizes(di),local_sizes(dj), & |
---|
[10338] | 1025 | & indimlens(dimids(3)),ntslice)) |
---|
[7683] | 1026 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_4d_i2, start=(/1,1,1,nt/) ), istop ) |
---|
| 1027 | !$OMP PARALLEL DEFAULT(NONE) PRIVATE(ji,jj,jk,jl) & |
---|
[10338] | 1028 | !$OMP& SHARED(idomain,jdomain,indimlens,dimids,start_pos,globaldata_4d_i2,localdata_4d_i2,di,dj,nt,ntslice) |
---|
| 1029 | DO jl = 1, ntslice |
---|
[7683] | 1030 | !$OMP DO |
---|
| 1031 | DO jk = 1, indimlens(dimids(3)) |
---|
| 1032 | DO jj = jdomain(1), jdomain(2) |
---|
| 1033 | DO ji = idomain(1), idomain(2) |
---|
| 1034 | globaldata_4d_i2(start_pos(di) + ji - 1, start_pos(dj) + jj - 1, jk, jl) = localdata_4d_i2(ji,jj,jk,jl) |
---|
| 1035 | END DO |
---|
| 1036 | END DO |
---|
| 1037 | END DO |
---|
| 1038 | !$OMP END DO nowait |
---|
| 1039 | END DO |
---|
| 1040 | !$OMP END PARALLEL |
---|
| 1041 | DEALLOCATE(localdata_4d_i2) |
---|
| 1042 | CASE( NF90_INT ) |
---|
| 1043 | ALLOCATE(localdata_4d_i4(local_sizes(di),local_sizes(dj), & |
---|
[10338] | 1044 | & indimlens(dimids(3)),ntslice)) |
---|
[7683] | 1045 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_4d_i4, start=(/1,1,1,nt/) ), istop ) |
---|
| 1046 | !$OMP PARALLEL DEFAULT(NONE) PRIVATE(ji,jj,jk,jl) & |
---|
[10338] | 1047 | !$OMP& SHARED(idomain,jdomain,indimlens,dimids,start_pos,globaldata_4d_i4,localdata_4d_i4,di,dj,nt,ntslice) |
---|
| 1048 | DO jl = 1, ntslice |
---|
[7683] | 1049 | !$OMP DO |
---|
| 1050 | DO jk = 1, indimlens(dimids(3)) |
---|
| 1051 | DO jj = jdomain(1), jdomain(2) |
---|
| 1052 | DO ji = idomain(1), idomain(2) |
---|
| 1053 | globaldata_4d_i4(start_pos(di) + ji - 1, start_pos(dj) + jj - 1, jk, jl) = localdata_4d_i4(ji,jj,jk,jl) |
---|
| 1054 | END DO |
---|
| 1055 | END DO |
---|
| 1056 | END DO |
---|
| 1057 | !$OMP END DO nowait |
---|
| 1058 | END DO |
---|
| 1059 | !$OMP END PARALLEL |
---|
| 1060 | DEALLOCATE(localdata_4d_i4) |
---|
| 1061 | CASE( NF90_FLOAT ) |
---|
| 1062 | ALLOCATE(localdata_4d_sp(local_sizes(di),local_sizes(dj), & |
---|
[10338] | 1063 | & indimlens(dimids(3)),ntslice)) |
---|
[7683] | 1064 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_4d_sp, start=(/1,1,1,nt/) ), istop ) |
---|
| 1065 | !$OMP PARALLEL DEFAULT(NONE) PRIVATE(ji,jj,jk,jl) & |
---|
[10338] | 1066 | !$OMP& SHARED(idomain,jdomain,indimlens,dimids,start_pos,globaldata_4d_sp,localdata_4d_sp,di,dj,nt,ntslice) |
---|
| 1067 | DO jl = 1, ntslice |
---|
[7683] | 1068 | !$OMP DO |
---|
| 1069 | DO jk = 1, indimlens(dimids(3)) |
---|
| 1070 | DO jj = jdomain(1), jdomain(2) |
---|
| 1071 | DO ji = idomain(1), idomain(2) |
---|
| 1072 | globaldata_4d_sp(start_pos(di) + ji - 1, start_pos(dj) + jj - 1, jk, jl) = localdata_4d_sp(ji,jj,jk,jl) |
---|
| 1073 | END DO |
---|
| 1074 | END DO |
---|
| 1075 | END DO |
---|
| 1076 | !$OMP END DO nowait |
---|
| 1077 | END DO |
---|
| 1078 | !$OMP END PARALLEL |
---|
| 1079 | DEALLOCATE(localdata_4d_sp) |
---|
| 1080 | CASE( NF90_DOUBLE ) |
---|
| 1081 | ALLOCATE(localdata_4d_dp(local_sizes(di),local_sizes(dj), & |
---|
[10338] | 1082 | & indimlens(dimids(3)),ntslice)) |
---|
[7683] | 1083 | CALL check_nf90( nf90_get_var( ncid, jv, localdata_4d_dp, start=(/1,1,1,nt/) ), istop ) |
---|
| 1084 | !$OMP PARALLEL DEFAULT(NONE) PRIVATE(ji,jj,jk,jl) & |
---|
[10338] | 1085 | !$OMP& SHARED(idomain,jdomain,indimlens,dimids,start_pos,globaldata_4d_dp,localdata_4d_dp,di,dj,nt,ntslice) |
---|
| 1086 | DO jl = 1, ntslice |
---|
[7683] | 1087 | !$OMP DO |
---|
| 1088 | DO jk = 1, indimlens(dimids(3)) |
---|
| 1089 | DO jj = jdomain(1), jdomain(2) |
---|
| 1090 | DO ji = idomain(1), idomain(2) |
---|
| 1091 | globaldata_4d_dp(start_pos(di) + ji - 1, start_pos(dj) + jj - 1, jk, jl) = localdata_4d_dp(ji,jj,jk,jl) |
---|
| 1092 | END DO |
---|
| 1093 | END DO |
---|
| 1094 | END DO |
---|
| 1095 | !$OMP END DO nowait |
---|
| 1096 | END DO |
---|
| 1097 | !$OMP END PARALLEL |
---|
| 1098 | DEALLOCATE(localdata_4d_dp) |
---|
| 1099 | CASE DEFAULT |
---|
| 1100 | WRITE(numerr,*) 'Unknown nf90 type: ', xtype |
---|
| 1101 | istop = istop + 1 |
---|
| 1102 | END SELECT |
---|
| 1103 | |
---|
| 1104 | ENDIF ! l_noRebuild false |
---|
| 1105 | |
---|
| 1106 | !3.4 Work out if the valid_min and valid_max attributes exist for this variable. |
---|
| 1107 | ! If they do then calculate the extrema over all input files. |
---|
| 1108 | |
---|
| 1109 | DO attid = 1, natts |
---|
| 1110 | CALL check_nf90( nf90_inq_attname( ncid, jv, attid, attname ), istop ) |
---|
| 1111 | IF( INDEX( attname, "valid_min" ) == 1 ) THEN |
---|
| 1112 | CALL check_nf90( nf90_get_att( ncid, jv, attname, InMin), istop ) |
---|
| 1113 | l_valid = .true. |
---|
| 1114 | ENDIF |
---|
| 1115 | IF( INDEX( attname, "valid_max" ) == 1 ) THEN |
---|
| 1116 | CALL check_nf90( nf90_get_att( ncid, jv, attname, InMax ), istop ) |
---|
| 1117 | l_valid = .true. |
---|
| 1118 | ENDIF |
---|
| 1119 | END DO |
---|
| 1120 | |
---|
| 1121 | IF (l_valid) THEN |
---|
| 1122 | !$OMP CRITICAL |
---|
| 1123 | IF( InMin < ValMin ) ValMin = InMin |
---|
| 1124 | IF( InMax > ValMax ) ValMax = InMax |
---|
| 1125 | !$OMP END CRITICAL |
---|
| 1126 | ENDIF |
---|
| 1127 | |
---|
| 1128 | !3.5 Abort if failure and only 1 thread |
---|
| 1129 | |
---|
| 1130 | IF( nthreads == 1 .AND. istop /= nf90_noerr ) THEN |
---|
| 1131 | WRITE(numerr,*) '*** NEMO rebuild failed! ***' |
---|
| 1132 | STOP 5 |
---|
| 1133 | ENDIF |
---|
| 1134 | |
---|
| 1135 | END DO ! loop over files |
---|
| 1136 | !$OMP END PARALLEL DO |
---|
| 1137 | |
---|
| 1138 | !3.6 Abort if any of the OMP threads failed |
---|
| 1139 | IF( istop /= nf90_noerr ) THEN |
---|
| 1140 | WRITE(numerr,*) '*** NEMO rebuild failed! ***' |
---|
| 1141 | STOP 5 |
---|
| 1142 | ENDIF |
---|
| 1143 | |
---|
| 1144 | ENDIF ! ndims > 2 |
---|
| 1145 | |
---|
| 1146 | !--------------------------------------------------------------------------- |
---|
| 1147 | !4. Write data to output file |
---|
| 1148 | |
---|
| 1149 | IF (l_verbose) WRITE(numout,*) 'Writing variable '//TRIM(varname)//'...' |
---|
| 1150 | |
---|
| 1151 | !4.1 If the valid min and max attributes exist then update them in the file |
---|
| 1152 | |
---|
| 1153 | IF( l_valid ) THEN |
---|
| 1154 | CALL check_nf90( nf90_put_att( outid, jv, "valid_min", ValMin ) ) |
---|
| 1155 | CALL check_nf90( nf90_put_att( outid, jv, "valid_max", ValMax ) ) |
---|
| 1156 | ENDIF |
---|
| 1157 | |
---|
| 1158 | !4.2 Write the data to the output file depending on how many dimensions it has |
---|
| 1159 | |
---|
| 1160 | IF( ndims == 0 ) THEN |
---|
| 1161 | |
---|
| 1162 | SELECT CASE( xtype ) |
---|
| 1163 | CASE( NF90_BYTE ) |
---|
| 1164 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_0d_i1 ) ) |
---|
| 1165 | CASE( NF90_SHORT ) |
---|
| 1166 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_0d_i2 ) ) |
---|
| 1167 | CASE( NF90_INT ) |
---|
| 1168 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_0d_i4 ) ) |
---|
| 1169 | CASE( NF90_FLOAT ) |
---|
| 1170 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_0d_sp ) ) |
---|
| 1171 | CASE( NF90_DOUBLE ) |
---|
| 1172 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_0d_dp ) ) |
---|
[10338] | 1173 | CASE DEFAULT |
---|
| 1174 | WRITE(numerr,*) '0d Unknown nf90 type: ', xtype |
---|
| 1175 | STOP 4 |
---|
[7683] | 1176 | END SELECT |
---|
| 1177 | |
---|
| 1178 | ELSEIF( ndims == 1 ) THEN |
---|
| 1179 | |
---|
| 1180 | SELECT CASE( xtype ) |
---|
| 1181 | CASE( NF90_BYTE ) |
---|
| 1182 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_1d_i1 ) ) |
---|
| 1183 | DEALLOCATE(globaldata_1d_i1) |
---|
| 1184 | CASE( NF90_SHORT ) |
---|
| 1185 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_1d_i2 ) ) |
---|
| 1186 | DEALLOCATE(globaldata_1d_i2) |
---|
| 1187 | CASE( NF90_INT ) |
---|
| 1188 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_1d_i4 ) ) |
---|
| 1189 | DEALLOCATE(globaldata_1d_i4) |
---|
| 1190 | CASE( NF90_FLOAT ) |
---|
| 1191 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_1d_sp ) ) |
---|
| 1192 | DEALLOCATE(globaldata_1d_sp) |
---|
| 1193 | CASE( NF90_DOUBLE ) |
---|
| 1194 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_1d_dp ) ) |
---|
| 1195 | DEALLOCATE(globaldata_1d_dp) |
---|
[10338] | 1196 | CASE DEFAULT |
---|
| 1197 | WRITE(numerr,*) '1d Unknown nf90 type: ', xtype |
---|
| 1198 | STOP 4 |
---|
[7683] | 1199 | END SELECT |
---|
| 1200 | |
---|
| 1201 | ELSEIF( ndims == 2 ) THEN |
---|
| 1202 | |
---|
| 1203 | SELECT CASE( xtype ) |
---|
| 1204 | CASE( NF90_BYTE ) |
---|
| 1205 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_2d_i1 ) ) |
---|
| 1206 | DEALLOCATE(globaldata_2d_i1) |
---|
| 1207 | CASE( NF90_SHORT ) |
---|
| 1208 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_2d_i2 ) ) |
---|
| 1209 | DEALLOCATE(globaldata_2d_i2) |
---|
| 1210 | CASE( NF90_INT ) |
---|
| 1211 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_2d_i4 ) ) |
---|
| 1212 | DEALLOCATE(globaldata_2d_i4) |
---|
| 1213 | CASE( NF90_FLOAT ) |
---|
| 1214 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_2d_sp ) ) |
---|
| 1215 | DEALLOCATE(globaldata_2d_sp) |
---|
| 1216 | CASE( NF90_DOUBLE ) |
---|
| 1217 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_2d_dp ) ) |
---|
| 1218 | DEALLOCATE(globaldata_2d_dp) |
---|
| 1219 | CASE DEFAULT |
---|
[10338] | 1220 | WRITE(numerr,*) '2d Unknown nf90 type: ', xtype |
---|
[7683] | 1221 | STOP 4 |
---|
| 1222 | END SELECT |
---|
| 1223 | |
---|
| 1224 | ELSEIF( ndims == 3 ) THEN |
---|
| 1225 | |
---|
| 1226 | SELECT CASE( xtype ) |
---|
| 1227 | CASE( NF90_BYTE ) |
---|
| 1228 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_3d_i1 ) ) |
---|
| 1229 | DEALLOCATE(globaldata_3d_i1) |
---|
| 1230 | CASE( NF90_SHORT ) |
---|
| 1231 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_3d_i2 ) ) |
---|
| 1232 | DEALLOCATE(globaldata_3d_i2) |
---|
| 1233 | CASE( NF90_INT ) |
---|
| 1234 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_3d_i4 ) ) |
---|
| 1235 | DEALLOCATE(globaldata_3d_i4) |
---|
| 1236 | CASE( NF90_FLOAT ) |
---|
| 1237 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_3d_sp ) ) |
---|
| 1238 | DEALLOCATE(globaldata_3d_sp) |
---|
| 1239 | CASE( NF90_DOUBLE ) |
---|
| 1240 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_3d_dp ) ) |
---|
| 1241 | DEALLOCATE(globaldata_3d_dp) |
---|
| 1242 | CASE DEFAULT |
---|
[10338] | 1243 | WRITE(numerr,*) '3d Unknown nf90 type: ', xtype |
---|
[7683] | 1244 | STOP 4 |
---|
| 1245 | END SELECT |
---|
| 1246 | |
---|
| 1247 | ELSEIF( ndims == 4 ) THEN |
---|
| 1248 | |
---|
| 1249 | SELECT CASE( xtype ) |
---|
| 1250 | CASE( NF90_BYTE ) |
---|
| 1251 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_4d_i1, start=(/1,1,1,nt/) ) ) |
---|
| 1252 | DEALLOCATE(globaldata_4d_i1) |
---|
| 1253 | CASE( NF90_SHORT ) |
---|
| 1254 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_4d_i2, start=(/1,1,1,nt/) ) ) |
---|
| 1255 | DEALLOCATE(globaldata_4d_i2) |
---|
| 1256 | CASE( NF90_INT ) |
---|
| 1257 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_4d_i4, start=(/1,1,1,nt/) ) ) |
---|
| 1258 | DEALLOCATE(globaldata_4d_i4) |
---|
| 1259 | CASE( NF90_FLOAT ) |
---|
| 1260 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_4d_sp, start=(/1,1,1,nt/) ) ) |
---|
| 1261 | DEALLOCATE(globaldata_4d_sp) |
---|
| 1262 | CASE( NF90_DOUBLE ) |
---|
| 1263 | CALL check_nf90( nf90_put_var( outid, jv, globaldata_4d_dp, start=(/1,1,1,nt/) ) ) |
---|
| 1264 | DEALLOCATE(globaldata_4d_dp) |
---|
| 1265 | CASE DEFAULT |
---|
[10338] | 1266 | WRITE(numerr,*) '4d Unknown nf90 type: ', xtype |
---|
[7683] | 1267 | STOP 4 |
---|
| 1268 | END SELECT |
---|
[10338] | 1269 | ! why only for big data set, test the cost. |
---|
| 1270 | CALL check_nf90( nf90_sync( outid ) ) ! flush buffers to disk after writing big 4D datasets |
---|
[7683] | 1271 | |
---|
| 1272 | ENDIF |
---|
| 1273 | |
---|
[10338] | 1274 | nt = nt + ntslice |
---|
[7683] | 1275 | |
---|
| 1276 | END DO ! WHILE loop |
---|
| 1277 | |
---|
| 1278 | END DO ! loop over variables |
---|
| 1279 | |
---|
| 1280 | !--------------------------------------------------------------------------- |
---|
| 1281 | !5. Close files |
---|
| 1282 | |
---|
| 1283 | !5.1 Close input files |
---|
| 1284 | |
---|
| 1285 | IF (l_verbose) WRITE(numout,*) 'Closing input files...' |
---|
| 1286 | DO ifile = 1, ndomain |
---|
| 1287 | ncid = inncids(ifile) |
---|
| 1288 | CALL check_nf90( nf90_close( ncid ) ) |
---|
| 1289 | END DO |
---|
| 1290 | |
---|
| 1291 | !5.2 Close output file |
---|
| 1292 | |
---|
| 1293 | IF (l_verbose) WRITE(numout,*) 'Closing output file...' |
---|
| 1294 | CALL check_nf90( nf90_close( outid ) ) |
---|
| 1295 | |
---|
| 1296 | IF (l_verbose) WRITE(numout,*) 'NEMO rebuild completed successfully' |
---|
| 1297 | IF (l_verbose) WRITE(numout,*) |
---|
| 1298 | |
---|
| 1299 | CONTAINS |
---|
| 1300 | |
---|
| 1301 | |
---|
| 1302 | SUBROUTINE check_nf90(status, errorFlag) |
---|
| 1303 | !--------------------------------------------------------------------- |
---|
| 1304 | ! Checks return code from nf90 library calls and warns if needed |
---|
| 1305 | ! If errorFlag is present then it just increments this flag (OMP use) |
---|
| 1306 | ! |
---|
| 1307 | !--------------------------------------------------------------------- |
---|
| 1308 | INTEGER, INTENT(IN ) :: status |
---|
| 1309 | INTEGER, INTENT(INOUT), OPTIONAL :: errorFlag |
---|
| 1310 | !--------------------------------------------------------------------- |
---|
| 1311 | |
---|
| 1312 | IF( status /= nf90_noerr ) THEN |
---|
| 1313 | WRITE(numerr,*) 'ERROR! : '//TRIM(nf90_strerror(status)) |
---|
| 1314 | IF( PRESENT( errorFlag ) ) THEN |
---|
| 1315 | errorFlag = errorFlag + status |
---|
| 1316 | ELSE |
---|
| 1317 | WRITE(numerr,*) "*** NEMO rebuild failed ***" |
---|
| 1318 | WRITE(numerr,*) |
---|
[10338] | 1319 | STOP 5 |
---|
[7683] | 1320 | ENDIF |
---|
| 1321 | ENDIF |
---|
| 1322 | |
---|
| 1323 | END SUBROUTINE check_nf90 |
---|
| 1324 | |
---|
| 1325 | |
---|
| 1326 | END PROGRAM rebuild_nemo |
---|