Changeset 11019 for NEMO/trunk
- Timestamp:
- 2019-05-20T22:21:43+02:00 (5 years ago)
- Location:
- NEMO/trunk/doc/latex/TOP
- Files:
-
- 3 deleted
- 4 edited
- 2 moved
Legend:
- Unmodified
- Added
- Removed
-
NEMO/trunk/doc/latex/TOP/main/TOP_manual.tex
r10896 r11019 1 1 %% ============================================================================== 2 %% NEMO_book.tex: build the NEMOReference Manual2 %% TOP Reference Manual 3 3 %% ============================================================================== 4 5 6 %% Run ../build_NEMO_manual.sh to generate the PDF version (with pdflatex)7 8 %% Document layout9 %% ==============================================================================10 11 \documentclass{book}12 4 13 5 … … 15 7 %% ============================================================================== 16 8 9 %% Document layout 10 \documentclass{book} 11 12 %% Custom style (.sty) 17 13 \usepackage{../../NEMO/main/NEMO_manual} 18 %\usepackage{../../tex_sub/NEMO_minted}19 14 20 \usepackage{bm} 15 %% Include references and index for single subfile compilation 16 \newcommand{\biblio}{\bibliography{../main/TOP_manual}} 17 \newcommand{\pindex}{\printindex} 21 18 22 19 \makeindex 23 20 21 %% End of common preamble between main and sub-files 22 \begin{document} 24 23 25 %% 26 %% ============================================================================== 27 28 \begin{document} 24 %% Override custom cmds for full manual compilation 25 \renewcommand{\biblio}{} 26 \renewcommand{\pindex}{} 29 27 30 28 … … 32 30 %% ============================================================================== 33 31 32 \graphicspath{{../../figures/logos/}} 33 34 34 %% Frontpage 35 \title{ 36 \includegraphics[height=0.05\textheight]{CMCC}\hfill 37 \includegraphics[height=0.05\textheight]{CNRS}\hfill 38 \includegraphics[height=0.05\textheight]{MOI} \hfill 39 \includegraphics[height=0.05\textheight]{UKMO}\hfill 40 \includegraphics[height=0.05\textheight]{NERC} \\ 41 {\Huge TOP \\} 42 {\Large Tracer in Ocean Paradigm -- The NEMO Passive Tracer engine}\\ 43 \small \textcolor{red}{First draft documentation. Needs completion and rewriting}. \\ 44 } 45 \author{The NEMO-TOP Group 46 \thanks{ 47 Eth\'{e} Christian, Lovato Thomas, Aumont Olivier, Palmi\'{e}ri Julien, 48 Mouchet Anne, Nurser Georges, Yool Andrew 49 }\\ 50 \textit{Issue 27, Notes du P\^{o}le de mod\'{e}lisation} \\ 51 \textit{Institut Pierre-Simon Laplace (IPSL)} \\ 52 \textit{ISSN 1288-1619} 53 } 54 \date{\today} 35 55 36 \title{ 37 \vspace{1.5cm} 38 \rule{400pt}{1.5pt} \\ 39 \vspace{0.45cm} 40 {\Huge TOP \\} 41 {\Large -- Tracer in Ocean Paradigm --}\\ 42 {\Large The NEMO Passive Tracer engine}\\ 43 \date{\today} 44 \author{The NEMO-TOP Group \\ 45 Eth\'e Christian, Lovato Thomas, Aumont Olivier \\ 46 Palmi\'eri Julien, Mouchet Anne, Nurser Georges, Yool Andrew \\ 47 \\ 48 \small \textit{Note du P\^ole de mod\'elisation de l'Institut Pierre-Simon Laplace No 31} \\ 49 \small \textcolor{red}{First draft documentation. Needs completion and rewriting}. \\ 50 \\ 51 ISSN No 1288-1619\\ 52 } 53 \rule{400pt}{1.5pt} 54 } 55 56 \maketitle % generate the title 56 \maketitle 57 57 \frontmatter 58 58 … … 68 68 \mainmatter 69 69 70 \graphicspath{{../../figures/TOP/}} 70 71 71 \subfile{../ tex_sub/introduction}72 \subfile{../ tex_sub/model_description}73 \subfile{../ tex_sub/model_setup}74 \subfile{../ tex_sub/miscellaneous}72 \subfile{../subfiles/introduction} 73 \subfile{../subfiles/model_description} 74 \subfile{../subfiles/model_setup} 75 \subfile{../subfiles/miscellaneous} 75 76 76 77 %% Appendix … … 83 84 84 85 %% Bibliography 85 86 86 \cleardoublepage 87 87 \phantomsection 88 88 \addcontentsline{toc}{chapter}{Bibliography} 89 90 \bibliography{../tex_main/TOP_manual.bbl} 89 \bibliography{../main/TOP_manual} 91 90 92 91 %% Index 93 94 92 \cleardoublepage 95 93 \phantomsection -
NEMO/trunk/doc/latex/TOP/subfiles/introduction.tex
r10896 r11019 37 37 \begin{center} 38 38 \vspace{0cm} 39 \includegraphics[width=0.80\textwidth]{ ../Figures/Fig_TOP_design.png}40 %\includegraphics[height=6cm,angle=-00]{ ../Figures/Fig_TOP_design.png}39 \includegraphics[width=0.80\textwidth]{Fig_TOP_design} 40 %\includegraphics[height=6cm,angle=-00]{Fig_TOP_design} 41 41 \caption{A schematic view of NEMO-TOP component} 42 42 \label{topdesign} -
NEMO/trunk/doc/latex/TOP/subfiles/model_description.tex
r10896 r11019 71 71 \subsection{ Advection} 72 72 %------------------------------------------namtrc_adv---------------------------------------------------- 73 \ forfile{../namelists/namtrc_adv}73 \nlst{namtrc_adv} 74 74 %------------------------------------------------------------------------------------------------------------- 75 75 The advection schemes used for the passive tracers are the same than the ones for $T$ and $S$ and described in section 5.1 of \citep{Madec_Bk2008}. The choice of an advection scheme can be selected independently and can differ from the ones used for active tracers. This choice is made in the \textit{namtrc\_adv} namelist, by setting to \textit{true} one and only one of the logicals \textit{ln\_trcadv\_xxx}, the same way of what is done for dynamics. … … 78 78 \subsection{ Lateral diffusion} 79 79 %------------------------------------------namtrc_ldf---------------------------------------------------- 80 \ forfile{../namelists/namtrc_ldf}80 \nlst{namtrc_ldf} 81 81 %------------------------------------------------------------------------------------------------------------- 82 82 In NEMO v4.0, the passive tracer diffusion has necessarily the same form as the active tracer diffusion, meaning that the numerical scheme must be the same. However the passive tracer mixing coefficient can be chosen as a multiple of the active ones by changing the value of \textit{rn\_ldf\_multi} in namelist \textit{namtrc\_ldf}. The choice of numerical scheme is then set in the \ngn{namtra\_ldf} namelist for the dynamic described in section 5.2 of \citep{Madec_Bk2008}. … … 91 91 92 92 %------------------------------------------namtrc_dmp---------------------------------------------------- 93 \ forfile{../namelists/namtrc_dmp}93 \nlst{namtrc_dmp} 94 94 %------------------------------------------------------------------------------------------------------------- 95 95 … … 100 100 101 101 %------------------------------------------namtrc_rad---------------------------------------------------- 102 \ forfile{../namelists/namtrc_rad}102 \nlst{namtrc_rad} 103 103 %------------------------------------------------------------------------------------------------------------- 104 104 … … 110 110 \label{SMS_models} 111 111 %------------------------------------------namtrc_sms---------------------------------------------------- 112 %\ forfile{../namelists/namtrc}112 %\nlst{namtrc} 113 113 %------------------------------------------------------------------------------------------------------------- 114 114 … … 116 116 %------------------------------------------namage---------------------------------------------------- 117 117 % 118 \ forfile{../namelists/namage}118 \nlst{namage} 119 119 %---------------------------------------------------------------------------------------------------------- 120 120 … … 151 151 %------------------------------------------namage---------------------------------------------------- 152 152 % 153 \ forfile{../namelists/namcfc}153 \nlst{namcfc} 154 154 %---------------------------------------------------------------------------------------------------------- 155 155 … … 324 324 \begin{figure}[!h] 325 325 \centering 326 \includegraphics[width=0.80\textwidth]{ ../Figures/CFC-atm-evol.png}326 \includegraphics[width=0.80\textwidth]{CFC-atm-evol} 327 327 \caption{Atmospheric CFC11, CFC12 and SF6 partial pressure evolution in both hemispheres.} 328 328 \label{img_cfcatm} … … 331 331 \begin{figure}[!h] 332 332 \centering 333 \includegraphics[width=0.80\textwidth]{ ../Figures/CFC_solub.png}333 \includegraphics[width=0.80\textwidth]{CFC_solub} 334 334 \caption{CFC11 solubility in mol m$^{-3}$ pptv$^{-1}$, calculated from the World Ocean Atlas 2013 temperature and salinity annual climatology.} 335 335 \label{img_cfcsol} … … 338 338 \begin{figure}[!h] 339 339 \centering 340 \includegraphics[width=0.80\textwidth]{ ../Figures/CFC_inventory.png}340 \includegraphics[width=0.80\textwidth]{CFC_inventory} 341 341 \caption{CFC11 vertical inventory in $\mu$mol m$^{-2}$, from one of the UK Earth System Model 1 model (UKESM1 - which uses NEMO as ocean component, with TOP for the passive tracers) historical run at year 2000.} 342 342 \label{img_cfcinv} … … 348 348 %------------------------------------------namage---------------------------------------------------- 349 349 % 350 \forfile{../namelists/namc14} 350 \nlst{namc14_fcg} 351 \nlst{namc14_typ} 352 \nlst{namc14_sbc} 351 353 %---------------------------------------------------------------------------------------------------------- 352 354 … … 444 446 \begin{figure}[!h] 445 447 \begin{center} 446 \includegraphics[width=0.9\hsize]{ ../Figures/drift-EXP06.png}448 \includegraphics[width=0.9\hsize]{drift-EXP06} 447 449 \end{center} 448 450 \vspace{-4ex} … … 456 458 \begin{figure}[!h] 457 459 \begin{center} 458 \includegraphics[width=0.9\hsize]{ ../Figures/C14bombCO2-NB.png}460 \includegraphics[width=0.9\hsize]{C14bombCO2-NB} 459 461 \end{center} 460 462 \vspace{-4ex} … … 485 487 \begin{figure}[!h] 486 488 \begin{center} 487 \includegraphics[width=0.9\hsize]{ ../Figures/PaleoCO2C14-NB.png}489 \includegraphics[width=0.9\hsize]{PaleoCO2C14-NB} 488 490 \end{center} 489 491 \vspace{-4ex} … … 591 593 592 594 %------------------------------------------namtrc_sms---------------------------------------------------- 593 \ forfile{../namelists/namdta_dyn}595 \nlst{namdta_dyn} 594 596 %------------------------------------------------------------------------------------------------------------- 595 597 -
NEMO/trunk/doc/latex/TOP/subfiles/model_setup.tex
r10896 r11019 7 7 \section{ Setting up a passive tracer configuration} 8 8 %------------------------------------------namtrc_int---------------------------------------------------- 9 \ forfile{../namelists/namtrc}9 \nlst{namtrc} 10 10 %------------------------------------------------------------------------------------------------------------- 11 11
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