- Timestamp:
- 2019-10-29T18:14:49+01:00 (5 years ago)
- Location:
- NEMO/branches/2019/dev_r11085_ASINTER-05_Brodeau_Advanced_Bulk/doc
- Files:
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- 13 deleted
- 6 edited
- 19 copied
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NEMO/branches/2019/dev_r11085_ASINTER-05_Brodeau_Advanced_Bulk/doc
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NEMO/branches/2019/dev_r11085_ASINTER-05_Brodeau_Advanced_Bulk/doc/rst/Makefile
r10990 r11831 1 # M inimal makefile for Sphinx documentation1 # Makefile for Sphinx documentation 2 2 # 3 3 … … 5 5 SPHINXOPTS = 6 6 SPHINXBUILD = sphinx-build 7 SPHINXPROJ = NEMO 8 SOURCEDIR = source 7 PAPER = 9 8 BUILDDIR = build 10 9 11 # Put it first so that "make" without argument is like "make help". 10 # Internal variables. 11 PAPEROPT_a4 = -D latex_paper_size=a4 12 PAPEROPT_letter = -D latex_paper_size=letter 13 ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) source 14 # the i18n builder cannot share the environment and doctrees with the others 15 I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) source 16 17 .PHONY: help clean html dirhtml drafthtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext 18 12 19 help: 13 @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) 20 @echo "Please use \`make <target>' where <target> is one of" 21 @echo " html to make standalone HTML files" 22 @echo " dirhtml to make HTML files named index.html in directories" 23 @echo " drafthtml to make an autoupdate HTML export while editing (todo list included)" 24 @echo " singlehtml to make a single large HTML file" 25 @echo " pickle to make pickle files" 26 @echo " json to make JSON files" 27 @echo " htmlhelp to make HTML files and a HTML help project" 28 @echo " qthelp to make HTML files and a qthelp project" 29 @echo " devhelp to make HTML files and a Devhelp project" 30 @echo " epub to make an epub" 31 @echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter" 32 @echo " latexpdf to make LaTeX files and run them through pdflatex" 33 @echo " text to make text files" 34 @echo " man to make manual pages" 35 @echo " texinfo to make Texinfo files" 36 @echo " info to make Texinfo files and run them through makeinfo" 37 @echo " gettext to make PO message catalogs" 38 @echo " changes to make an overview of all changed/added/deprecated items" 39 @echo " linkcheck to check all external links for integrity" 40 @echo " doctest to run all doctests embedded in the documentation (if enabled)" 14 41 15 .PHONY: help Makefile 42 clean: 43 -rm -rf $(BUILDDIR)/* 16 44 17 # Catch-all target: route all unknown targets to Sphinx using the new 18 # "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). 19 %: Makefile 20 @ $(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)45 html: 46 $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html 47 @echo 48 @echo "Build finished. The HTML pages are in $(BUILDDIR)/html." 21 49 22 # Watch source directory and rebuild the documentation when a change is detected 23 # Browse to 127.0.0.1:8000/NEMO_guide.html 24 htmllive: 25 sphinx-autobuild $(SPHINXOPTS) $(SOURCEDIR) $(BUILDDIR)/htmllive 50 dirhtml: 51 $(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml 52 @echo 53 @echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml." 54 55 drafthtml: 56 sphinx-autobuild -b html -t draft $(ALLSPHINXOPTS) $(BUILDDIR)/drafthtml 57 @echo 58 @echo "Build finished. The HTML pages are in $(BUILDDIR)/drafthtml." 59 60 singlehtml: 61 $(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml 62 @echo 63 @echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml." 64 65 pickle: 66 $(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle 67 @echo 68 @echo "Build finished; now you can process the pickle files." 69 70 json: 71 $(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json 72 @echo 73 @echo "Build finished; now you can process the JSON files." 74 75 htmlhelp: 76 $(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp 77 @echo 78 @echo "Build finished; now you can run HTML Help Workshop with the" \ 79 ".hhp project file in $(BUILDDIR)/htmlhelp." 80 81 qthelp: 82 $(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp 83 @echo 84 @echo "Build finished; now you can run "qcollectiongenerator" with the" \ 85 ".qhcp project file in $(BUILDDIR)/qthelp, like this:" 86 @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/NEMO.qhcp" 87 @echo "To view the help file:" 88 @echo "# assistant -collectionFile $(BUILDDIR)/qthelp/NEMO.qhc" 89 90 devhelp: 91 $(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp 92 @echo 93 @echo "Build finished." 94 @echo "To view the help file:" 95 @echo "# mkdir -p $$HOME/.local/share/devhelp/NEMO" 96 @echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/NEMO" 97 @echo "# devhelp" 98 99 epub: 100 $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub 101 @echo 102 @echo "Build finished. The epub file is in $(BUILDDIR)/epub." 103 104 latex: 105 $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex 106 @echo 107 @echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex." 108 @echo "Run \`make' in that directory to run these through (pdf)latex" \ 109 "(use \`make latexpdf' here to do that automatically)." 110 111 latexpdf: 112 $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex 113 @echo "Running LaTeX files through pdflatex..." 114 $(MAKE) -C $(BUILDDIR)/latex all-pdf 115 @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." 116 117 text: 118 $(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text 119 @echo 120 @echo "Build finished. The text files are in $(BUILDDIR)/text." 121 122 man: 123 $(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man 124 @echo 125 @echo "Build finished. The manual pages are in $(BUILDDIR)/man." 126 127 texinfo: 128 $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo 129 @echo 130 @echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo." 131 @echo "Run \`make' in that directory to run these through makeinfo" \ 132 "(use \`make info' here to do that automatically)." 133 134 info: 135 $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo 136 @echo "Running Texinfo files through makeinfo..." 137 make -C $(BUILDDIR)/texinfo info 138 @echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo." 139 140 gettext: 141 $(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale 142 @echo 143 @echo "Build finished. The message catalogs are in $(BUILDDIR)/locale." 144 145 changes: 146 $(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes 147 @echo 148 @echo "The overview file is in $(BUILDDIR)/changes." 149 150 linkcheck: 151 $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck 152 @echo 153 @echo "Link check complete; look for any errors in the above output " \ 154 "or in $(BUILDDIR)/linkcheck/output.txt." 155 156 doctest: 157 $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest 158 @echo "Testing of doctests in the sources finished, look at the " \ 159 "results in $(BUILDDIR)/doctest/output.txt." -
NEMO/branches/2019/dev_r11085_ASINTER-05_Brodeau_Advanced_Bulk/doc/rst/README.rst
r10991 r11831 3 3 ********************** 4 4 5 | The NEMO guide is made up of several files written in `ReStructuredText <http://docutils.sourceforge.net/rst.html>`_ (`.rst` extension), a WYSIWYG markup language used in the Python community, and scattered all over the NEMO sources. 5 | The NEMO guide is made up of several files written in 6 `ReStructuredText <http://docutils.sourceforge.net/rst.html>`_ (`.rst` extension), 7 a WYSIWYG markup language used in the Python community, and scattered all over the NEMO sources. 6 8 | You can view them one by one in plain text from `./source` folder, or export all to a user-friendly guide under `./build` (only HTML format at the moment, PDF expected later). 7 9 -
NEMO/branches/2019/dev_r11085_ASINTER-05_Brodeau_Advanced_Bulk/doc/rst/source/_static/style.css
r10279 r11831 1 . rstblue{ color: blue ; }2 . rstgrey , .rstgreysup { color: grey ; }3 . rstgreen{ color: seagreen; }1 .blue { color: blue ; } 2 .grey , .greysup { color: grey ; } 3 .green { color: seagreen; } 4 4 5 5 .logo { filter: invert(1) !important; } -
NEMO/branches/2019/dev_r11085_ASINTER-05_Brodeau_Advanced_Bulk/doc/rst/source/conf.py
r10991 r11831 1 1 # -*- coding: utf-8 -*- 2 2 # 3 # Configuration file for the Sphinx documentation builder. 4 # 5 # This file does only contain a selection of the most common options. For a 6 # full list see the documentation: 7 # http://www.sphinx-doc.org/en/master/config 8 9 # -- Project information ----------------------------------------------------- 10 11 project = 'NEMO' 12 author = 'NEMO System Team' 13 14 # The short X.Y version 15 version = 'trk' 16 # The full version, including alpha/beta/rc tags 17 release = 'trunk' 18 19 20 # -- General configuration --------------------------------------------------- 21 22 # Add any Sphinx extension module names here, as strings. They can be 23 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom 24 # ones. 25 extensions = ['sphinx.ext.extlinks', 'sphinxcontrib.bibtex'] 3 # NEMO documentation build configuration file, created by 4 # sphinx-quickstart on Tue Oct 15 20:13:55 2019. 5 # 6 # This file is execfile()d with the current directory set to its containing dir. 7 # 8 # Note that not all possible configuration values are present in this 9 # autogenerated file. 10 # 11 # All configuration values have a default; values that are commented out 12 # serve to show the default. 13 14 import sys, os 15 16 # If extensions (or modules to document with autodoc) are in another directory, 17 # add these directories to sys.path here. If the directory is relative to the 18 # documentation root, use os.path.abspath to make it absolute, like shown here. 19 #sys.path.insert(0, os.path.abspath('.')) 20 21 # -- General configuration ----------------------------------------------------- 22 23 # If your documentation needs a minimal Sphinx version, state it here. 24 #needs_sphinx = '1.0' 25 26 # Add any Sphinx extension module names here, as strings. They can be extensions 27 # coming with Sphinx (named 'sphinx.ext.*') or your custom ones. 28 extensions = ['sphinx.ext.extlinks', 'sphinxcontrib.bibtex', 29 'sphinx.ext.todo' , 'sphinx.ext.autosectionlabel'] 26 30 27 31 # Add any paths that contain templates here, relative to this directory. 28 32 templates_path = ['_templates'] 29 33 34 # The suffix of source filenames. 35 source_suffix = '.rst' 36 37 # The encoding of source files. 38 #source_encoding = 'utf-8-sig' 39 30 40 # The master toctree document. 31 master_doc = 'NEMO_guide' 41 master_doc = 'guide' 42 43 # General information about the project. 44 project = u'NEMO' 45 copyright = u'2019, NEMO Consortium' 46 47 # The version info for the project you're documenting, acts as replacement for 48 # |version| and |release|, also used in various other places throughout the 49 # built documents. 50 # 51 # The short X.Y version. 52 version = 'trk' 53 # The full version, including alpha/beta/rc tags. 54 release = 'trunk' 55 56 # The language for content autogenerated by Sphinx. Refer to documentation 57 # for a list of supported languages. 58 #language = None 59 60 # There are two options for replacing |today|: either, you set today to some 61 # non-false value, then it is used: 62 #today = '' 63 # Else, today_fmt is used as the format for a strftime call. 64 #today_fmt = '%B %d, %Y' 32 65 33 66 # List of patterns, relative to source directory, that match files and 34 67 # directories to ignore when looking for source files. 35 # This pattern also affects html_static_path and html_extra_path . 36 exclude_patterns = ['global.rst', 'coarsening.rst'] 68 exclude_patterns = ['global.rst', 'readme.rst'] 69 70 # The reST default role (used for this markup: `text`) to use for all documents. 71 #default_role = None 72 73 # If true, '()' will be appended to :func: etc. cross-reference text. 74 #add_function_parentheses = True 75 76 # If true, the current module name will be prepended to all description 77 # unit titles (such as .. function::). 78 #add_module_names = True 79 80 # If true, sectionauthor and moduleauthor directives will be shown in the 81 # output. They are ignored by default. 82 #show_authors = False 37 83 38 84 # The name of the Pygments (syntax highlighting) style to use. 39 pygments_style = 'sphinx' 40 41 42 # -- Options for HTML output ------------------------------------------------- 85 pygments_style = 'emacs' 86 87 # A list of ignored prefixes for module index sorting. 88 #modindex_common_prefix = [] 89 90 91 # -- Options for HTML output --------------------------------------------------- 43 92 44 93 # The theme to use for HTML and HTML Help pages. See the documentation for 45 94 # a list of builtin themes. 46 #47 95 html_theme = 'sphinx_rtd_theme' 48 96 … … 50 98 # further. For a list of options available for each theme, see the 51 99 # documentation. 52 # 53 html_theme_options = {} 100 #html_theme_options = {} 101 102 # Add any paths that contain custom themes here, relative to this directory. 103 #html_theme_path = [] 104 105 # The name for this set of Sphinx documents. If None, it defaults to 106 # "<project> v<release> documentation". 107 #html_title = None 108 109 # A shorter title for the navigation bar. Default is the same as html_title. 110 #html_short_title = None 111 112 # The name of an image file (relative to this directory) to place at the top 113 # of the sidebar. 114 #html_logo = None 115 116 # The name of an image file (within the static path) to use as favicon of the 117 # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 118 # pixels large. 119 html_favicon = '_static/ORCA.ico' 54 120 55 121 # Add any paths that contain custom static files (such as style sheets) here, … … 58 124 html_static_path = ['_static'] 59 125 60 html_favicon = '_static/ORCA.ico' 61 62 63 # -- Options for LaTeX output ------------------------------------------------ 126 # If not '', a 'Last updated on:' timestamp is inserted at every page bottom, 127 # using the given strftime format. 128 #html_last_updated_fmt = '%b %d, %Y' 129 130 # If true, SmartyPants will be used to convert quotes and dashes to 131 # typographically correct entities. 132 #html_use_smartypants = True 133 134 # Custom sidebar templates, maps document names to template names. 135 #html_sidebars = {} 136 137 # Additional templates that should be rendered to pages, maps page names to 138 # template names. 139 #html_additional_pages = {} 140 141 # If false, no module index is generated. 142 #html_domain_indices = True 143 144 # If false, no index is generated. 145 #html_use_index = True 146 147 # If true, the index is split into individual pages for each letter. 148 #html_split_index = False 149 150 # If true, links to the reST sources are added to the pages. 151 #html_show_sourcelink = True 152 153 # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. 154 #html_show_sphinx = True 155 156 # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. 157 #html_show_copyright = True 158 159 # If true, an OpenSearch description file will be output, and all pages will 160 # contain a <link> tag referring to it. The value of this option must be the 161 # base URL from which the finished HTML is served. 162 #html_use_opensearch = '' 163 164 # This is the file name suffix for HTML files (e.g. ".xhtml"). 165 #html_file_suffix = None 166 167 # Output file base name for HTML help builder. 168 htmlhelp_basename = 'NEMOdoc' 169 170 171 # -- Options for LaTeX output -------------------------------------------------- 64 172 65 173 latex_elements = { 66 # The paper size ('letterpaper' or 'a4paper'). 67 # 68 # 'papersize': 'letterpaper', 69 70 # The font size ('10pt', '11pt' or '12pt'). 71 # 72 # 'pointsize': '10pt', 73 74 # Additional stuff for the LaTeX preamble. 75 # 76 # 'preamble': '', 77 78 # Latex figure (float) alignment 79 # 80 # 'figure_align': 'htbp', 174 # The paper size ('letterpaper' or 'a4paper'). 175 #'papersize': 'letterpaper', 176 177 # The font size ('10pt', '11pt' or '12pt'). 178 #'pointsize': '10pt', 179 180 # Additional stuff for the LaTeX preamble. 181 #'preamble': '', 81 182 } 82 183 83 184 # Grouping the document tree into LaTeX files. List of tuples 84 # (source start file, target name, title, 85 # author, documentclass [howto, manual, or own class]). 185 # (source start file, target name, title, author, documentclass [howto/manual]). 86 186 latex_documents = [ 87 (master_doc, 'NEMO_guide.tex','NEMO Quick Start Guide',88 'NEMO System Team', 'howto'),187 ('guide', 'guide.tex', u'NEMO Quick Start Guide', 188 u'NEMO Consortium', 'howto'), 89 189 ] 90 190 91 92 # -- Customisation ----------------------------------------------------------- 191 # The name of an image file (relative to this directory) to place at the top of 192 # the title page. 193 #latex_logo = None 194 195 # For "manual" documents, if this is true, then toplevel headings are parts, 196 # not chapters. 197 #latex_use_parts = False 198 199 # If true, show page references after internal links. 200 #latex_show_pagerefs = False 201 202 # If true, show URL addresses after external links. 203 #latex_show_urls = False 204 205 # Documents to append as an appendix to all manuals. 206 #latex_appendices = [] 207 208 # If false, no module index is generated. 209 #latex_domain_indices = True 210 211 212 # -- Options for manual page output -------------------------------------------- 213 214 # One entry per manual page. List of tuples 215 # (source start file, name, description, authors, manual section). 216 man_pages = [ 217 ('guide', 'nemo', u'NEMO Documentation', 218 [u'NEMO System Team'], 1) 219 ] 220 221 # If true, show URL addresses after external links. 222 #man_show_urls = False 223 224 225 # -- Options for Texinfo output ------------------------------------------------ 226 227 # Grouping the document tree into Texinfo files. List of tuples 228 # (source start file, target name, title, author, 229 # dir menu entry, description, category) 230 texinfo_documents = [ 231 ('guide', 'NEMO', u'NEMO Documentation', 232 u'NEMO System Team', 'NEMO', 'One line description of project.', 233 'Miscellaneous'), 234 ] 235 236 # Documents to append as an appendix to all manuals. 237 #texinfo_appendices = [] 238 239 # If false, no module index is generated. 240 #texinfo_domain_indices = True 241 242 # How to display URL addresses: 'footnote', 'no', or 'inline'. 243 #texinfo_show_urls = 'footnote' 244 245 # -- Customisation ------------------------------------------------------------- 93 246 94 247 # Timestamping … … 99 252 # Link aliases 100 253 extlinks = { 101 'doi' : ('https://doi.org/%s' , None), 102 'forge' : ('https://forge.ipsl.jussieu.fr/nemo/%s' , None), 103 'github' : ('https://github.com/%s' , None), 104 'xios' : ('https://forge.ipsl.jussieu.fr/ioserver/%s', None), 105 'website': ('https://www.nemo-ocean.eu/%s' , None), 106 'zenodo' : ('https://zenodo.org/publication/%s' , None) 254 'doi' : ('https://doi.org/%s' , 'doi:'), 255 'manhtml': ('https://forge.ipsl.jussieu.fr/nemo/chrome/site/doc/NEMO/manual/html/%s', None ), 256 'forge' : ('https://forge.ipsl.jussieu.fr/nemo/%s' , None ), 257 'gmd' : ('https://www.geosci-model-dev.net/%s' , None ), 258 'github' : ('https://github.com/NEMO-ocean/%s' , None ), 259 'xios' : ('https://forge.ipsl.jussieu.fr/ioserver/%s' , None ), 260 'website': ('https://www.nemo-ocean.eu/%s' , None ), 261 'zenodo' : ('https://zenodo.org/publication/%s' , None ) 107 262 } 108 263 … … 112 267 # SVN revision 113 268 import subprocess 114 revision = subprocess.check_output("svnversion").decode("utf-8") 115 rst_prolog = '.. |revision| replace:: %s' % revision 269 rev = subprocess.check_output("svnversion").decode("utf-8") 270 rst_prolog = '.. |revision| replace:: %s' % rev 271 272 # 'draft' build tag: DRAFT watermark and TODO list 273 if tags.has('draft'): 274 todo_include_todos = True 275 todo_emit_warnings = True 276 else: 277 exclude_patterns = ['global.rst', 'readme.rst', 'todos.rst', 'unpub*'] 278 279 # Default language to highlight set to fortran 280 highlight_language = 'fortran' -
NEMO/branches/2019/dev_r11085_ASINTER-05_Brodeau_Advanced_Bulk/doc/rst/source/global.rst
r10605 r11831 1 1 .. Roles (custom styles related to CSS classes in 'source/_static/style.css') 2 2 3 .. role:: rstblue 4 .. role:: rstgreen 5 .. role:: rstgrey 6 .. role:: rstgreysup(sup) 7 .. role:: underline 8 :class: underline 3 .. role:: blue 4 .. role:: green 5 .. role:: grey 6 .. role:: greysup(sup) 9 7 10 8 .. Substitutions 11 9 12 .. |OPA| replace:: :rstblue:`NEMO-OPA` 13 .. |SI3| replace:: :rstgrey:`NEMO-SI`\ :rstgreysup:`3` 14 .. |TOP| replace:: :rstgreen:`NEMO-TOP/PISCES` 10 .. |NEMO-OCE| replace:: :blue:`NEMO-OCE (Ocean dynamics)` 11 .. |OCE| replace:: :blue:`NEMO-OCE` 12 .. |NEMO-ICE| replace:: :grey:`NEMO-SI`\ :greysup:`3` :grey:`(Sea Ice)` 13 .. |ICE| replace:: :grey:`NEMO-SI`\ :greysup:`3` 14 .. |NEMO-MBG| replace:: :green:`NEMO-TOP/PISCES (Tracers)` 15 .. |MBG| replace:: :green:`NEMO-TOP/PISCES` 15 16 16 .. Institutes17 .. External links 17 18 18 .. _CMCC: https://www.cmcc.it 19 .. _CNRS: https://www.cnrs.fr 20 .. _Mercator Ocean: https://www.mercator-ocean.fr 21 .. _Met Office: https://www.metoffice.gov.uk 22 .. _MOI: https://www.mercator-ocean.fr 23 .. _NERC: https://nerc.ukri.org 19 .. Consortium institutes 24 20 25 .. Models / Softwares 21 .. _CMCC: https://www.cmcc.it 22 .. _CNRS: https://www.cnrs.fr 23 .. _Met Office: https://www.metoffice.gov.uk 24 .. _MOI: https://www.mercator-ocean.fr 25 .. _NERC: https://nerc.ukri.org 26 27 .. Models / Libraries / Dependencies 26 28 27 29 .. _AGRIF: http://agrif.imag.fr 28 .. _FCM: https://metomi.github.io/fcm/doc/ 30 .. _BFM: http://www.bfm-community.eu 31 .. _FCM: https://metomi.github.io/fcm 29 32 .. _IOIPSL: https://forge.ipsl.jussieu.fr/igcmg/browser/IOIPSL 33 .. _NEMO: https://www.nemo-ocean.eu 30 34 .. _OASIS: https://portal.enes.org/oasis 35 .. _XIOS: https://forge.ipsl.jussieu.fr/ioserver 31 36 32 .. NEMO 37 .. Misc. 33 38 34 .. _NEMO: https://www.nemo-ocean.eu 35 .. _NEMO strategy: https://doi.org/10.5281/zenodo.1471663 36 .. _NEMO guide: :samp: https://doi.org/10.5281/zenodo.1475325 37 .. _NEMO manual: https://doi.org/10.5281/zenodo.1464816 38 .. _SI3 manual: :samp: https://doi.org/10.5281/zenodo.1471689 39 .. _TOP manual: :samp: https://doi.org/10.5281/zenodo.1471700 39 .. _EGU: http://www.egu.eu 40 .. _Special Issue: https://www.geosci-model-dev.net/special_issue40.html 41 .. _BFM man: https://cmcc-foundation.github.io/www.bfm-community.eu/files/bfm-nemo-manual_r1.0_201508.pdf 42 .. _RST man: https://www.sphinx-doc.org/en/master/usage/restructuredtext/index.html 43 .. _PAPA station: http://www.pmel.noaa.gov/OCS/Papa/index-Papa.shtml 44 .. _ISOMIP: http://staff.acecrc.org.au/~bkgalton/ISOMIP/test_cavities.pdf 45 46 .. DOI 47 48 .. Publications (`:samp:` to deactivate link for unpublished documents) 49 50 .. _DOI man OCE: https://doi.org/10.5281/zenodo.1464816 51 .. _DOI man ICE: :samp: https://doi.org/10.5281/zenodo.1471689 52 .. _DOI man MBG: :samp: https://doi.org/10.5281/zenodo.1471700 53 .. _DOI qsg: :samp: https://doi.org/10.5281/zenodo.1475325 54 .. _DOI dev stgy: https://doi.org/10.5281/zenodo.1471663 55 .. _DOI data: https://doi.org/10.5281/zenodo.1472245 56 57 .. Badges (same labels as previously, substitution to link images) 58 59 .. |DOI man OCE| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1464816.svg 60 .. |DOI man ICE| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1471689.svg 61 .. |DOI man MBG| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1471700.svg 62 .. |DOI qsg| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1475325.svg 63 .. |DOI data| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1472245.svg
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