- Timestamp:
- 2020-10-01T13:33:30+02:00 (4 years ago)
- Location:
- NEMO/branches/2020/dev_r13383_HPC-02_Daley_Tiling/src/TOP
- Files:
-
- 11 edited
-
C14/trcatm_c14.F90 (modified) (1 diff)
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CFC/trcsms_cfc.F90 (modified) (1 diff)
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PISCES/P2Z/p2zopt.F90 (modified) (3 diffs)
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PISCES/P4Z/p4zfechem.F90 (modified) (1 diff)
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PISCES/P4Z/p4zlim.F90 (modified) (1 diff)
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PISCES/P4Z/p4zsed.F90 (modified) (2 diffs)
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PISCES/P4Z/p4zsms.F90 (modified) (4 diffs)
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PISCES/P4Z/p5zlim.F90 (modified) (1 diff)
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TRP/trdmxl_trc.F90 (modified) (1 diff)
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trcbdy.F90 (modified) (3 diffs)
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trcdta.F90 (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
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NEMO/branches/2020/dev_r13383_HPC-02_Daley_Tiling/src/TOP/C14/trcatm_c14.F90
r13295 r13553 120 120 IF( ierr3 /= 0 ) CALL ctl_stop( 'STOP', 'trc_atm_c14_ini: unable to allocate fareaz' ) 121 121 ! 122 DO_2D( 1, 1, 1, 1 ) 122 DO_2D( 1, 1, 1, 1 ) ! from C14b package 123 123 IF( gphit(ji,jj) >= yn40 ) THEN 124 124 fareaz(ji,jj,1) = 0. -
NEMO/branches/2020/dev_r13383_HPC-02_Daley_Tiling/src/TOP/CFC/trcsms_cfc.F90
r13295 r13553 126 126 127 127 ! !------------! 128 DO_2D( 1, 1, 1, 1 ) 129 128 DO_2D( 1, 1, 1, 1 ) ! i-j loop ! 129 ! !------------! 130 130 ! space interpolation 131 131 zpp_cfc = xphem(ji,jj) * zpatm(1,jl) & -
NEMO/branches/2020/dev_r13383_HPC-02_Daley_Tiling/src/TOP/PISCES/P2Z/p2zopt.F90
r13295 r13553 95 95 ! ! Photosynthetically Available Radiation (PAR) 96 96 zcoef = 12 * redf / rcchl / rpig ! -------------------------------------- 97 DO_3D( 1, 1, 1, 1, 2, jpk ) 97 DO_3D( 1, 1, 1, 1, 2, jpk ) ! local par at w-levels 98 98 zpig = LOG( MAX( TINY(0.), tr(ji,jj,jk-1,jpphy,Kmm) ) * zcoef ) 99 99 zkr = xkr0 + xkrp * EXP( xlr * zpig ) … … 102 102 zparg(ji,jj,jk) = zparg(ji,jj,jk-1) * EXP( -zkg * e3t(ji,jj,jk-1,Kmm) ) 103 103 END_3D 104 DO_3D( 1, 1, 1, 1, 1, jpkm1 ) 104 DO_3D( 1, 1, 1, 1, 1, jpkm1 ) ! mean par at t-levels 105 105 zpig = LOG( MAX( TINY(0.), tr(ji,jj,jk,jpphy,Kmm) ) * zcoef ) 106 106 zkr = xkr0 + xkrp * EXP( xlr * zpig ) … … 114 114 ! ! -------------- 115 115 neln(:,:) = 1 ! euphotic layer level 116 DO_3D( 1, 1, 1, 1, 1, jpkm1 ) 116 DO_3D( 1, 1, 1, 1, 1, jpkm1 ) ! (i.e. 1rst T-level strictly below EL bottom) 117 117 IF( etot(ji,jj,jk) >= zpar100(ji,jj) ) neln(ji,jj) = jk + 1 118 118 END_3D -
NEMO/branches/2020/dev_r13383_HPC-02_Daley_Tiling/src/TOP/PISCES/P4Z/p4zfechem.F90
r13295 r13553 118 118 ! 119 119 zfeequi = zFe3(ji,jj,jk) * 1E-9 120 zhplus = max( rtrn, hi(ji,jj,jk) )121 fe3sol = fesol(ji,jj,jk,1) * ( zhplus**3 + fesol(ji,jj,jk,2) * zhplus**2 &122 & + fesol(ji,jj,jk,3) * zhplus + fesol(ji,jj,jk,4) &123 & + fesol(ji,jj,jk,5) / zhplus )124 120 zfecoll = 0.5 * zFeL1(ji,jj,jk) * 1E-9 125 121 ! precipitation of Fe3+, creation of nanoparticles -
NEMO/branches/2020/dev_r13383_HPC-02_Daley_Tiling/src/TOP/PISCES/P4Z/p4zlim.F90
r13295 r13553 161 161 zlim1 = xdiatno3(ji,jj,jk) + xdiatnh4(ji,jj,jk) 162 162 zlim2 = tr(ji,jj,jk,jppo4,Kbb) / ( tr(ji,jj,jk,jppo4,Kbb) + zconc1dnh4 ) 163 zlim3 = tr(ji,jj,jk,jpsil,Kbb) / ( tr(ji,jj,jk,jpsil,Kbb) + xksi(ji,jj) )163 zlim3 = tr(ji,jj,jk,jpsil,Kbb) / ( tr(ji,jj,jk,jpsil,Kbb) + xksi(ji,jj) + rtrn ) 164 164 zratio = tr(ji,jj,jk,jpdfe,Kbb) * z1_trbdia 165 165 zironmin = xcoef1 * tr(ji,jj,jk,jpdch,Kbb) * z1_trbdia + xcoef2 * zlim1 + xcoef3 * xdiatno3(ji,jj,jk) -
NEMO/branches/2020/dev_r13383_HPC-02_Daley_Tiling/src/TOP/PISCES/P4Z/p4zsed.F90
r13295 r13553 313 313 ENDIF 314 314 ! 315 IF(sn_cfctl%l_prttrc) THEN ! print mean tr ends (USEd for debugging)315 IF(sn_cfctl%l_prttrc) THEN ! print mean trneds (USEd for debugging) 316 316 WRITE(charout, fmt="('sed ')") 317 317 CALL prt_ctl_info( charout, cdcomp = 'top' ) … … 366 366 lk_sed = ln_sediment .AND. ln_sed_2way 367 367 ! 368 nitrpot(:,:,jpk) = 0._wp ! define last level for iom_put 369 ! 368 370 END SUBROUTINE p4z_sed_init 369 371 -
NEMO/branches/2020/dev_r13383_HPC-02_Daley_Tiling/src/TOP/PISCES/P4Z/p4zsms.F90
r13295 r13553 69 69 REAL(wp), ALLOCATABLE, DIMENSION(:,: ) :: zw2d 70 70 REAL(wp), ALLOCATABLE, DIMENSION(:,:,: ) :: zw3d 71 REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: ztrdt ! 4D workspace71 REAL(wp), DIMENSION(jpi,jpj,jpk,jp_pisces) :: ztrbbio 72 72 73 73 !!--------------------------------------------------------------------- … … 93 93 rfact = rDt_trc 94 94 ! 95 ! trends computation initialisation96 IF( l_trdtrc ) THEN97 ALLOCATE( ztrdt(jpi,jpj,jpk,jp_pisces) ) !* store now fields before applying the Asselin filter98 ztrdt(:,:,:,:) = tr(:,:,:,:,Kmm)99 ENDIF100 !101 102 95 IF( ( ln_top_euler .AND. kt == nittrc000 ) .OR. ( .NOT.ln_top_euler .AND. kt <= nittrc000 + 1 ) ) THEN 103 96 rfactr = 1. / rfact … … 117 110 END DO 118 111 ENDIF 112 113 DO jn = jp_pcs0, jp_pcs1 ! Store the tracer concentrations before entering PISCES 114 ztrbbio(:,:,:,jn) = tr(:,:,:,jn,Kbb) 115 END DO 116 119 117 ! 120 118 IF( ll_bc ) CALL p4z_bc( kt, Kbb, Kmm, Krhs ) ! external sources of nutrients … … 198 196 END DO 199 197 ! 200 IF( ln_top_euler ) THEN 201 DO jn = jp_pcs0, jp_pcs1 202 tr(:,:,:,jn,Kmm) = tr(:,:,:,jn,Kbb) 203 END DO 204 ENDIF 198 END DO 199 ! 200 #endif 201 ! 202 IF( ln_sediment ) THEN 203 ! 204 CALL sed_model( kt, Kbb, Kmm, Krhs ) ! Main program of Sediment model 205 ! 206 ENDIF 207 ! 208 DO jn = jp_pcs0, jp_pcs1 209 tr(:,:,:,jn,Krhs) = ( tr(:,:,:,jn,Kbb) - ztrbbio(:,:,:,jn) ) * rfactr 210 tr(:,:,:,jn,Kbb ) = ztrbbio(:,:,:,jn) 211 ztrbbio(:,:,:,jn) = 0._wp 205 212 END DO 206 213 ! 207 214 IF( l_trdtrc ) THEN 208 215 DO jn = jp_pcs0, jp_pcs1 209 ztrdt(:,:,:,jn) = ( tr(:,:,:,jn,Kbb) - ztrdt(:,:,:,jn) ) * rfactr210 216 CALL trd_trc( tr(:,:,:,jn,Krhs), jn, jptra_sms, kt, Kmm ) ! save trends 211 217 END DO 212 DEALLOCATE( ztrdt )213 218 END IF 214 #endif 215 ! 216 IF( ln_sediment ) THEN 217 ! 218 CALL sed_model( kt, Kbb, Kmm, Krhs ) ! Main program of Sediment model 219 ! 220 IF( ln_top_euler ) THEN 221 DO jn = jp_pcs0, jp_pcs1 222 tr(:,:,:,jn,Kmm) = tr(:,:,:,jn,Kbb) 223 END DO 224 ENDIF 225 ! 226 ENDIF 227 ! 219 ! 228 220 IF( lrst_trc ) CALL p4z_rst( kt, Kbb, Kmm, 'WRITE' ) !* Write PISCES informations in restart file 229 221 ! -
NEMO/branches/2020/dev_r13383_HPC-02_Daley_Tiling/src/TOP/PISCES/P4Z/p5zlim.F90
r13295 r13553 306 306 & / (xqndmax(ji,jj,jk) - 2. * xqndmin(ji,jj,jk) ) ) & 307 307 & * xqndmax(ji,jj,jk) / (zration + rtrn) 308 zlim3 = tr(ji,jj,jk,jpsil,Kbb) / ( tr(ji,jj,jk,jpsil,Kbb) + xksi(ji,jj) )308 zlim3 = tr(ji,jj,jk,jpsil,Kbb) / ( tr(ji,jj,jk,jpsil,Kbb) + xksi(ji,jj) + rtrn ) 309 309 zlim4 = MAX( 0., ( zratiof - zqfemd ) / qfdopt ) 310 310 xlimdfe(ji,jj,jk) = MIN( 1., zlim4 ) -
NEMO/branches/2020/dev_r13383_HPC-02_Daley_Tiling/src/TOP/TRP/trdmxl_trc.F90
r13295 r13553 148 148 ! ... Weights for vertical averaging 149 149 wkx_trc(:,:,:) = 0.e0 150 DO_3D( 1, 1, 1, 1, 1, jpktrd_trc ) 150 DO_3D( 1, 1, 1, 1, 1, jpktrd_trc ) ! initialize wkx_trc with vertical scale factor in mixed-layer 151 151 IF( jk - nmld_trc(ji,jj) < 0 ) wkx_trc(ji,jj,jk) = e3t(ji,jj,jk,Kmm) * tmask(ji,jj,jk) 152 152 END_3D -
NEMO/branches/2020/dev_r13383_HPC-02_Daley_Tiling/src/TOP/trcbdy.F90
r13226 r13553 49 49 INTEGER :: ib_bdy ,ir, jn ,igrd ! Loop indices 50 50 REAL(wp), POINTER, DIMENSION(:,:) :: ztrc 51 REAL(wp), POINTER :: zfac52 51 LOGICAL :: llrim0 ! indicate if rim 0 is treated 53 52 LOGICAL, DIMENSION(4) :: llsend1, llrecv1 ! indicate how communications are to be carried out … … 61 60 IF( ir == 0 ) THEN ; llrim0 = .TRUE. 62 61 ELSE ; llrim0 = .FALSE. 63 END 62 ENDIF 64 63 DO ib_bdy=1, nb_bdy 64 ! 65 65 DO jn = 1, jptra 66 66 ! 67 ztrc => trcdta_bdy(jn,ib_bdy)%trc 68 zfac => trcdta_bdy(jn,ib_bdy)%rn_fac 67 IF( ASSOCIATED(trcdta_bdy(jn,ib_bdy)%trc) .AND. trcdta_bdy(jn,ib_bdy)%cn_obc /= 'neumann' ) THEN 68 IF( .NOT. ASSOCIATED(ztrc) ) ALLOCATE( ztrc(idx_bdy(ib_bdy)%nblen(igrd),jpk) ) 69 ztrc(:,:) = trcdta_bdy(jn,ib_bdy)%trc(:,:) * trcdta_bdy(jn,ib_bdy)%rn_fac 70 ENDIF 69 71 ! 70 SELECT CASE( TRIM(trcdta_bdy(jn,ib_bdy)%cn_obc))72 SELECT CASE( trcdta_bdy(jn,ib_bdy)%cn_obc ) 71 73 CASE('none' ) ; CYCLE 72 74 CASE('frs' ) ! treat the whole boundary at once 73 IF( ir == 0 ) CALL bdy_frs( idx_bdy(ib_bdy), tr(:,:,:,jn,Krhs), ztrc*zfac )75 IF( ir == 0 ) CALL bdy_frs( idx_bdy(ib_bdy), tr(:,:,:,jn,Krhs), ztrc ) 74 76 CASE('specified' ) ! treat the whole rim at once 75 IF( ir == 0 ) CALL bdy_spe( idx_bdy(ib_bdy), tr(:,:,:,jn,Krhs), ztrc*zfac ) 76 CASE('neumann' ) ; CALL bdy_nmn( idx_bdy(ib_bdy), igrd , tr(:,:,:,jn,Krhs) ) ! tra masked 77 CASE('orlanski' ) ; CALL bdy_orl( idx_bdy(ib_bdy), tr(:,:,:,jn,Kbb), tr(:,:,:,jn,Krhs), ztrc*zfac, ll_npo=.false. ) 78 CASE('orlanski_npo') ; CALL bdy_orl( idx_bdy(ib_bdy), tr(:,:,:,jn,Kbb), tr(:,:,:,jn,Krhs), ztrc*zfac, ll_npo=.true. ) 77 IF( ir == 0 ) CALL bdy_spe( idx_bdy(ib_bdy), tr(:,:,:,jn,Krhs), ztrc ) 78 CASE('neumann' ) ; CALL bdy_nmn( idx_bdy(ib_bdy), igrd , tr(:,:,:,jn,Krhs), llrim0 ) ! tra masked 79 CASE('orlanski' ) ; CALL bdy_orl( idx_bdy(ib_bdy), tr(:,:,:,jn,Kbb), tr(:,:,:,jn,Krhs), ztrc, llrim0, & 80 & ll_npo=.FALSE. ) 81 CASE('orlanski_npo') ; CALL bdy_orl( idx_bdy(ib_bdy), tr(:,:,:,jn,Kbb), tr(:,:,:,jn,Krhs), ztrc, llrim0, & 82 & ll_npo=.TRUE. ) 79 83 CASE DEFAULT ; CALL ctl_stop( 'trc_bdy : unrecognised option for open boundaries for passive tracers' ) 80 84 END SELECT 81 85 ! 82 86 END DO 87 ! 88 IF( ASSOCIATED(ztrc) ) DEALLOCATE(ztrc) 89 ! 83 90 END DO 84 91 ! 85 92 IF( nn_hls > 1 .AND. ir == 1 ) CYCLE ! at least 2 halos will be corrected -> no need to correct rim 1 before rim 0 86 IF( nn_hls == 1 ) THEN ; llsend1(:) = .false. ; llrecv1(:) = .false. ; END 93 IF( nn_hls == 1 ) THEN ; llsend1(:) = .false. ; llrecv1(:) = .false. ; ENDIF 87 94 DO ib_bdy=1, nb_bdy 88 SELECT CASE( TRIM(cn_tra(ib_bdy)) )95 SELECT CASE( cn_tra(ib_bdy) ) 89 96 CASE('neumann') 90 97 llsend1(:) = llsend1(:) .OR. lsend_bdyint(ib_bdy,1,:,ir) ! possibly every direction, T points … … 97 104 IF( ANY(llsend1) .OR. ANY(llrecv1) ) THEN ! if need to send/recv in at least one direction 98 105 CALL lbc_lnk( 'trcbdy', tr(:,:,:,:,Krhs), 'T', 1.0_wp, kfillmode=jpfillnothing ,lsend=llsend1, lrecv=llrecv1 ) 99 END 106 ENDIF 100 107 ! 101 108 END DO ! ir -
NEMO/branches/2020/dev_r13383_HPC-02_Daley_Tiling/src/TOP/trcdta.F90
r13295 r13553 199 199 WRITE(numout,*) 'trc_dta: interpolates passive tracer data onto the s- or mixed s-z-coordinate mesh' 200 200 ENDIF 201 DO_2D( 1, 1, 1, 1 ) 201 DO_2D( 1, 1, 1, 1 ) ! vertical interpolation of T & S 202 202 DO jk = 1, jpk ! determines the intepolated T-S profiles at each (i,j) points 203 203 zl = gdept(ji,jj,jk,Kmm)
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