Changeset 14986 for NEMO/branches/2021/dev_r14116_HPC-10_mcastril_Mixed_Precision_implementation/doc/latex/TOP/main

Timestamp:

2021-06-14T13:34:08+02:00 (3 years ago)

Author:

sparonuz

Message:

Merge trunk -r14984:HEAD

Location:

NEMO/branches/2021/dev_r14116_HPC-10_mcastril_Mixed_Precision_implementation/doc/latex/TOP/main

Files:

• abstract.tex (modified) (1 diff)
• authors.tex (modified) (1 diff)
• bibliography.bib (modified) (4 diffs)
• introduction.tex (modified) (2 diffs)

NEMO/branches/2021/dev_r14116_HPC-10_mcastril_Mixed_Precision_implementation/doc/latex/TOP/main/abstract.tex

@@ -24 +24 @@
 it includes different sub-modules: ocean water age, inorganic carbon (CFCs) \& radiocarbon (C14b),
 built-in biogeochemical model (PISCES), and prototype for user-defined cases or
-coupling with alternative biogeochemical models (\eg \href{http://www.bfm-community.eu}{BFM}).
+coupling with alternative biogeochemical models (\eg, \href{http://www.bfm-community.eu}{BFM}).

NEMO/branches/2021/dev_r14116_HPC-10_mcastril_Mixed_Precision_implementation/doc/latex/TOP/main/authors.tex

@@ -5 +5 @@
 Georges Nurser         \\
 Julien Palmi\'{e}ri    \\
+Renaud Person    \\
 Andrew Yool

NEMO/branches/2021/dev_r14116_HPC-10_mcastril_Mixed_Precision_implementation/doc/latex/TOP/main/bibliography.bib

@@ -187 +187 @@
 }
 
+@article{         getzlaff_2013,
+  author        = {Getzlaff, Julia and Dietze, Heiner},
+  title         = {Effects of increased isopycnal diffusivity
+                  mimicking the unresolved equatorial intermediate
+                  current system in an earth system climate model},
+  year          = {2013},
+  volume        = {40},
+  number        = {10},
+  pages         = {2166--2170},
+  doi           = {10.1002/grl.50419},
+  url           = {https://dx.doi.org/10.1002/grl.50419},
+  journal       = {Geophysical Research Letters},
+  publisher     = {Wiley Online Library}
+}
+
 @techreport{      gibson_trpt86,
   title         = "Standards for software development and maintenance",
@@ -271 +286 @@
   journal   = {Limnology and Oceanography},
   publisher = {Wiley}
+}
+
+@Article{         mathiot_explicit_2017,
+  author        = {Mathiot, Pierre and Jenkins, Adrian and Harris, Christopher 
+                  and Madec, Gurvan},
+  title         = {Explicit representation and parametrised impacts of under 
+                  ice shelf seas in the z∗ coordinate ocean model {NEMO} 3.6},
+  year          = {2017},
+  volume        = {10},
+  number        = {7},
+  month         = jul,
+  pages         = {2849--2874},
+  issn          = {1991-9603},
+  doi           = {10.5194/gmd-10-2849-2017},
+  url           = {https://www.geosci-model-dev.net/10/2849/2017/},
+  journal       = {Geoscientific Model Development},
+  publisher = {Copernicus GmbH}
 }
 
@@ -448 +480 @@
 }
 
+@Article{         person_sensitivity_2019,
+  author        = {Person, Renaud and Aumont, Olivier and Madec, Gurvan and 
+                   Vancoppenolle, Martin and Bopp, Laurent and Merino, Nacho},
+  title         = {Sensitivity of ocean biogeochemistry to the iron supply from the 
+                  {Antarctic} {Ice} {Sheet} explored with a biogeochemical model},
+  year          = {2019},
+  volume        = {16},
+  number        = {18},
+  month         = sep,
+  pages         = {3583--3603},
+  issn          = {1726-4189},
+  doi           = {10.5194/bg-16-3583-2019},
+  url           = {https://www.biogeosciences.net/16/3583/2019/},
+  journal       = {Biogeosciences},
+  publisher = {Copernicus GmbH}
+}
+
 @Article{     reimer_2013,
   author = {Reimer, Paula J and Bard, Edouard and Bayliss, Alex and
@@ -630 +679 @@
   publisher = {Elsevier BV}
 }
+
+

NEMO/branches/2021/dev_r14116_HPC-10_mcastril_Mixed_Precision_implementation/doc/latex/TOP/main/introduction.tex

@@ -11 +11 @@
 \begin{itemize}
         \item a transport code TRP sharing the same advection/diffusion routines with the dynamics, with specific treatment of some features like the surface boundary
-conditions, or the positivity of passive tracers concentrations
+conditions or the positivity of passive tracers concentrations
         \item sources and sinks - SMS - models that can be typically biogeochemical, biological or radioactive
-        \item an offline option which is a simplified OPA 9 model using fields of physics variables that are previously stored to disk
+        \item an offline option which is a simplified OPA 9 model using fields of physical variables that were previously stored on disk
 \end{itemize}
 
-There is two ways of coupling TOP to the dynamics :
+There are two ways of coupling TOP to the dynamics :
 
 \begin{itemize}
         \item \textit{online coupling} : the evolution of passive tracers is computed along with the dynamics
-        \item \textit{offline coupling} : the fields of physics variables are read from files and interpolated at each model time step, with no constraints on the time sampling in the input files
+        \item \textit{offline coupling} : the physical variable fields are read from files and interpolated at each model time step, with no constraints on the temporal sampling in the input files
 \end{itemize}
 
-TOP is designed to handle multiple oceanic tracers through a modular approach and it includes different sub-modules :
+TOP is designed to handle multiple oceanic tracers through a modular approach and includes different sub-modules :
 
 \begin{itemize}
         \item the ocean water age module (AGE) tracks down the time-dependent spread of surface waters into the ocean interior
-        \item inorganic carbon (e.g. CFCs, SF6) and radiocarbon (C14) passive tracers can be modeled to assess ocean absorption timescales of anthropogenic emissions and further address water masses ventilation
+        \item inorganic (\eg, CFCs, SF6) and radiocarbon (C14) passive tracers can be modeled to assess ocean absorption timescales of anthropogenic emissions and further address water masses ventilation
         \item a built-in biogeochemical model (PISCES) to simulate lower trophic levels ecosystem dynamics in the global ocean
-        \item a prototype tracer module (MY\_TRC) to enable user-defined cases or the coupling with alternative biogeochemical models ( e.g. BFM, MEDUSA, ERSEM, BFM, ECO3M)
+        \item a prototype tracer module (MY\_TRC) to enable user-defined cases or the coupling with alternative biogeochemical models (\eg, BFM, MEDUSA, ERSEM, BFM, ECO3M)
 \end{itemize}
 
@@ -36 +36 @@
 \vspace{0cm}
 \includegraphics[width=0.80\textwidth]{Fig_TOP_design}
-%\includegraphics[height=6cm,angle=-00]{Fig_TOP_design}
-\caption{A schematic view of NEMO-TOP component}
+\caption{Schematic view of the NEMO-TOP component}
 \label{topdesign}
 \end{center}