Changeset 3535 for branches/2012/dev_r3438_LOCEAN15_PISLOB

Timestamp:

2012-11-13T09:20:20+01:00 (11 years ago)

Author:

flavoni

Message:

update sette.sh, see ticket: #941

Location:

branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/SETTE

Files:

• input_ORCA2_LIM_AGRIF.cfg (modified) (1 diff)
• prepare_job.sh (modified) (2 diffs)
• sette.sh (modified) (9 diffs)

branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/SETTE/input_ORCA2_LIM_AGRIF.cfg

@@ -1 @@
-ORCA2_LIM_AGRIF_nemo_v3.3.tar
+ORCA2_LIM_nemo_v3.4.tar

branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/SETTE/prepare_job.sh

@@ -1 +1 @@
 #####################################################
-# Author : Italo Epicoco for NEMO
-# Contact : italo.epicoco@unisalento.it
+# Author : Simona Flavoni for NEMO
+# Contact : sflod@locean-ipsl.upmc.fr
 #
 # Some scripts called by sette.sh 
@@ -145 +145 @@
 ################################################################
 
+##########################################################################
+# COPY RESTART FILES (if needed; i.e. only for SHORT job in RESTART TESTS)
+# get the input tarfile if needed
+# SF : not ok for the moment because at this point is needed cn_exp variable,
+# SF : here it it not known.
+#\cd ${EXE_DIR}
+#if [ "$(echo ${TEST_NAME} | grep -c "SHORT" )" -ne 0 ] ; then
+#    for (( i=1; i<=${NB_PROC}; ${NB_PROC}++)) ; do
+#        L_NPROC=`printf "%04d\n" $i`
+#        ln -sf ../LONG/${NEW_CONF}_00000060_restart_${L_NPROC-1}.nc .
+#    done
+#fi
+## SF : other way
+##      for file in ../LONG/${NEW_CONF}_*restart_0*.nc ; do
+##              ncpu=`echo $file | awk -F '_' '{print $NF}' | cut -f 1 -d '.'`
+##              ln -sf ${file}  .
+##      done
+##fi
+##########################################################################
+
 ################################################################
 # RUN OPA

branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/SETTE/sette.sh

@@ -178 +178 @@
     cd ${SETTE_DIR}
     . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE}
-    cd ${SETTE_DIR}
-    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
 
     cd ${SETTE_DIR}
@@ -196 +194 @@
     set_namelist namelist jpnj 2
     set_namelist namelist jpnij 4
-    cp ..\/LONG\/GYRE_LONG_00000060_restart*.nc .
     set_namelist namelist cn_ocerst_in \"GYRE_LONG_00000060_restart\"
+    for (( i=1; i<=$NPROC; i++)) ; do
+        L_NPROC=$(( $i - 1 ))
+        L_NPROC=`printf "%04d\n" ${L_NPROC}`
+        ln -sf ../LONG/${NEW_CONF}_00000060_restart_${L_NPROC}.nc .
+    done
     cd ${SETTE_DIR}
     . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE}
@@ -294 +296 @@
     cd ${SETTE_DIR}
     . ./prepare_job.sh input_ORCA2_LIM_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE}
-    cd ${SETTE_DIR}
-    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
     
     cd ${SETTE_DIR}
@@ -315 +315 @@
     set_namelist namelist_top ln_rsttr .true.
     set_namelist namelist_top nn_rsttr 2
-    cp ../LONG/O2LP_LONG_00000075_restart*nc .
     set_namelist namelist cn_ocerst_in \"O2LP_LONG_00000075_restart\"
     set_namelist namelist_ice cn_icerst_in \"O2LP_LONG_00000075_restart_ice\"
@@ -331 +330 @@
     # put ln_pisdmp to false : no restoring to global mean value
     set_namelist namelist_pisces ln_pisdmp .false.
+    for (( i=1; i<=$NPROC; i++)) ; do
+        L_NPROC=$(( $i - 1 ))
+        L_NPROC=`printf "%04d\n" ${L_NPROC}`
+        ln -sf ../LONG/O2LP_LONG_00000075_restart_${L_NPROC-1}.nc .
+        ln -sf ../LONG/O2LP_LONG_00000075_restart_trc_${L_NPROC-1}.nc .
+        ln -sf ../LONG/O2LP_LONG_00000075_restart_ice_${L_NPROC-1}.nc .
+    done
     cd ${SETTE_DIR}
     . ./prepare_job.sh input_ORCA2_LIM_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE}
@@ -449 +455 @@
     # put ln_pisdmp to false : no restoring to global mean value
     set_namelist namelist_pisces ln_pisdmp .false.
-
     cd ${SETTE_DIR}
     . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE}
-##    cd ${SETTE_DIR}
-##   . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
     
     cd ${SETTE_DIR}
@@ -472 +475 @@
     set_namelist namelist_top nn_rsttr 2
     set_namelist namelist_top cn_trcrst_in \"OFFP_LONG_00000020_restart_trc\"
+    for (( i=1; i<=$NPROC; i++)) ; do
+        L_NPROC=$(( $i - 1 ))
+        L_NPROC=`printf "%04d\n" ${L_NPROC}`
+        ln -sf ../LONG/OFFP_LONG_00000020_restart_${L_NPROC-1}.nc .
+        ln -sf ../LONG/OFFP_LONG_00000020_restart_${L_NPROC-1}_trc.nc .
+    done
     # put ln_ironsed, ln_river, ln_ndepo, ln_dust
     # if not you need input files, and for tests is not necessary
@@ -590 +599 @@
     cd ${SETTE_DIR}
     . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE}
-##   cd ${SETTE_DIR}
-##    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
 
     cd ${SETTE_DIR}
@@ -613 +620 @@
     set_namelist namelist nn_rstctl 2
     set_namelist namelist cn_ocerst_in \"AMM12_00000006_restart\"
-    cp ../LONG/AMM12_00000006_restart*.nc .
+    for (( i=1; i<=$NPROC; i++)) ; do
+        L_NPROC=$(( $i - 1 ))
+        L_NPROC=`printf "%04d\n" ${L_NPROC}`
+        ln -sf ../LONG/AMM12_00000006_restart_${L_NPROC-1}.nc .
+    done
     cd ${SETTE_DIR}
     . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE}