- Timestamp:
- 2012-11-28T09:46:30+01:00 (11 years ago)
- Location:
- branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/ORCA2_OFF_PISCES
- Files:
-
- 2 added
- 1 deleted
- 2 edited
-
EXP00/domain_def.xml (added)
-
EXP00/field_def.xml (added)
-
EXP00/iodef.xml (modified) (3 diffs)
-
EXP00/xmlio_server.def (deleted)
-
cpp_ORCA2_OFF_PISCES.fcm (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
-
branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/iodef.xml
r3680 r3695 1 1 <?xml version="1.0"?> 2 2 <simulation> 3 4 <context id="nemo">5 3 4 <context id="nemo" time_origin="1900-01-01 00:00:00" > 5 6 6 <!-- $id$ --> 7 7 8 8 <!-- 9 9 ============================================================================================================ … … 12 12 ============================================================================================================ 13 13 --> 14 15 <field_definition level="1" prec="4" operation="ave(X)" enabled=".TRUE."> <!-- time step automaticaly defined --> 16 17 <!-- ptrc on T grid --> 18 19 <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> 20 <field id="DIC" description="Dissolved inorganic Concentration" unit="mmol/m3" /> 21 <field id="Alkalini" description="Total Alkalinity Concentration" unit="mmol/m3" /> 22 <field id="O2" description="Oxygen Concentration" unit="mmol/m3" /> 23 <field id="CaCO3" description="Calcite Concentration" unit="mmol/m3" /> 24 <field id="PO4" description="Phosphate Concentration" unit="mmol/m3" /> 25 <field id="POC" description="Small organic carbon Concentration" unit="mmol/m3" /> 26 <field id="Si" description="Silicate Concentration" unit="mmol/m3" /> 27 <field id="PHY" description="Nanophytoplankton Concentration" unit="mmol/m3" /> 28 <field id="ZOO" description="Microzooplankton Concentration" unit="mmol/m3" /> 29 <field id="DOC" description="Dissolved organic Concentration" unit="mmol/m3" /> 30 <field id="PHY2" description="Diatoms Concentration" unit="mmol/m3" /> 31 <field id="ZOO2" description="Mesozooplankton Concentration" unit="mmol/m3" /> 32 <field id="DSi" description="Diatoms Silicate Concentration" unit="mmol/m3" /> 33 <field id="Fer" description="Dissolved Iron Concentration" unit="mmol/m3" /> 34 <field id="BFe" description="Big iron particles Concentration" unit="mmol/m3" /> 35 <field id="GOC" description="Big organic carbon Concentration" unit="mmol/m3" /> 36 <field id="SFe" description="Small iron particles Concentration" unit="mmol/m3" /> 37 <field id="DFe" description="Diatoms iron Concentration" unit="mmol/m3" /> 38 <field id="GSi" description="Sinking biogenic Silicate Concentration" unit="mmol/m3" /> 39 <field id="NFe" description="Nano iron Concentration" unit="mmol/m3" /> 40 <field id="NCHL" description="Nano chlorophyl Concentration" unit="mg/m3" /> 41 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mg/m3" /> 42 <field id="NO3" description="Nitrates Concentration" unit="mmol/m3" /> 43 <field id="NH4" description="Ammonium Concentration" unit="mmol/m3" /> 44 </group> 45 46 <!-- diad on T grid : variables available with key_diatrc --> 47 48 <group id="diad_T" axis_ref="none" grid_ref="grid_T"> 49 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 50 <field id="CO3" description="Bicarbonates" unit="mol/m3" axis_ref="deptht" /> 51 <field id="CO3sat" description="CO3 saturation" unit="mol/m3" axis_ref="deptht" /> 52 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 53 <field id="PPPHY" description="Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 54 <field id="PPPHY2" description="Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 55 <field id="PPNEWN" description="New Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 56 <field id="PPNEWD" description="New Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 57 <field id="PBSi" description="Primary production of Si diatoms" unit="molSi/m3/s" axis_ref="deptht" /> 58 <field id="PFeN" description="Primary production of nano iron" unit="molFe/m3/s" axis_ref="deptht" /> 59 <field id="PFeD" description="Primary production of diatoms iron" unit="molFe/m3/s" axis_ref="deptht" /> 60 <field id="xfracal" description="Calcifying fraction" unit="-" axis_ref="deptht" /> 61 <field id="PCAL" description="Calcite production" unit="molC/m3/s" axis_ref="deptht" /> 62 <field id="DCAL" description="Calcite dissolution" unit="molC/m3/s" axis_ref="deptht" /> 63 <field id="GRAZ1" description="Grazing by microzooplankton" unit="molC/m3/s" axis_ref="deptht" /> 64 <field id="GRAZ2" description="Grazing by mesozooplankton" unit="molC/m3/s" axis_ref="deptht" /> 65 <field id="REMIN" description="Oxic remineralization of OM" unit="molC/m3/s" axis_ref="deptht" /> 66 <field id="DENIT" description="Anoxic remineralization of OM" unit="molC/m3/s" axis_ref="deptht" /> 67 <field id="Nfix" description="Nitrogen fixation" unit="molN/m3/s" axis_ref="deptht" /> 68 <field id="Mumax" description="Maximum growth rate" unit="s-1" axis_ref="deptht" /> 69 <field id="MuN" description="Realized growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 70 <field id="MuD" description="Realized growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 71 <field id="LNnut" description="Nutrient limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 72 <field id="LDnut" description="Nutrient limitation term in Diatoms" unit="-" axis_ref="deptht" /> 73 <field id="LNFe" description="Iron limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 74 <field id="LDFe" description="Iron limitation term in Diatoms" unit="-" axis_ref="deptht" /> 75 <field id="LNlight" description="Light limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 76 <field id="LDlight" description="Light limitation term in Diatoms" unit="-" axis_ref="deptht" /> 77 <field id="Fe2" description="Iron II concentration" unit="nmol/L" axis_ref="deptht" /> 78 <field id="Fe3" description="Iron III concentration" unit="nmol/L" axis_ref="deptht" /> 79 <field id="FeL1" description="Complexed Iron concentration with L1" unit="nmol/L" axis_ref="deptht" /> 80 <field id="FeL2" description="Complexed Iron concentration with L2" unit="nmol/L" axis_ref="deptht" /> 81 <field id="FeP" description="Precipitated Iron III" unit="nmol/L" axis_ref="deptht" /> 82 <field id="TL1" description="Total L1 concentration" unit="nmol/L" axis_ref="deptht" /> 83 <field id="TL2" description="Total L2 concentration" unit="nmol/L" axis_ref="deptht" /> 84 <field id="pdust" description="dust concentration" unit="g/L" /> 85 <field id="Totlig" description="Total ligand concentation" unit="nmol/L" axis_ref="deptht" /> 86 <field id="Biron" description="Bioavailable iron" unit="nmol/L" axis_ref="deptht" /> 87 <field id="Sdenit" description="Nitrate reduction in the sediments" unit="molN/m2/s" /> 88 <field id="Ironice" description="Iron input/uptake due to sea ice" unit="molFe/m2/s" /> 89 <field id="HYDR" description="Iron input from hydrothemal vents" unit="molFe/m2/s" /> 90 <field id="EPC100" description="Export of carbon particles at 100 m" unit="mol/m2/s" /> 91 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="mol/m2/s" /> 92 <field id="EPSI100" description="Export of Silicate at 100 m" unit="mol/m2/s" /> 93 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="mol/m2/s" /> 94 <field id="Cflx" description="DIC flux" unit="mol/m2/s" /> 95 <field id="Oflx" description="Oxygen flux" unit="mol/m2/s" /> 96 <field id="Kg" description="Gas transfer" unit="mol/m2/s/uatm" /> 97 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 98 <field id="Dpo2" description="Delta O2" unit="uatm" /> 99 <field id="Heup" description="Euphotic layer depth" unit="m" /> 100 <field id="Irondep" description="Iron deposition from dust" unit="mol/m2/s" /> 101 <field id="Ironsed" description="Iron deposition from sediment" unit="mol/m2/s" axis_ref="deptht" /> 102 </group> 103 104 <!-- scalar --> 105 106 <group id="scalar" axis_ref="none" grid_ref="scalarpoint" zoom_ref="1point" > 107 </group> 108 109 </field_definition> 110 14 <field_definition src="./field_def.xml"/> 111 15 <!-- 112 16 ============================================================================================================ … … 116 20 ============================================================================================================ 117 21 --> 22 23 <file_definition type="multi_file" sync_freq="1d" min_digits="4"> 24 25 <file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files --> 26 <file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files --> 27 <file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files --> 28 <file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files --> 29 <file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files --> 30 31 <file_group id="1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 1d files --> 32 </file_group> 33 <file_group id="3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files --> 34 <file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files --> 35 </file_group> 118 36 119 <file_definition output_level="10" enabled=".TRUE."> 120 121 <group id="1d" output_freq="86400" output_level="10" enabled=".TRUE."> <!-- 1d files --> 122 </group> 37 <file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files --> 38 <file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files --> 39 <file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files --> 40 <file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files --> 41 <file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files --> 123 42 124 < group id="5d" output_freq="432000" output_level="10" enabled=".TRUE."> <!-- 5dfiles -->125 < /group>126 127 < group id="1m" output_freq="-1" output_level="10" enabled=".TRUE."> <!-- real monthly files -->43 <file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."/> <!-- real yearly files --> 44 <file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files --> 45 <file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files --> 46 <file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files --> 128 47 129 <file id="1m_ptrc_T" name="auto" description="pisces sms variables" > 130 <field ref="DIC" /> 131 <field ref="Alkalini" /> 132 <field ref="O2" /> 133 <field ref="CaCO3" /> 134 <field ref="PO4" /> 135 <field ref="POC" /> 136 <field ref="Si" /> 137 <field ref="PHY" /> 138 <field ref="ZOO" /> 139 <field ref="DOC" /> 140 <field ref="PHY2" /> 141 <field ref="ZOO2" /> 142 <field ref="DSi" /> 143 <field ref="Fer" /> 144 <field ref="BFe" /> 145 <field ref="GOC" /> 146 <field ref="SFe" /> 147 <field ref="DFe" /> 148 <field ref="GSi" /> 149 <field ref="NFe" /> 150 <field ref="NCHL" /> 151 <field ref="DCHL" /> 152 <field ref="NO3" /> 153 <field ref="NH4" /> 154 </file> 155 156 <file id="1m_diad_T" name="auto" description="additional pisces diagnostics" > 157 <field ref="PH" /> 158 <field ref="CO3" /> 159 <field ref="CO3sat" /> 160 <field ref="PAR" /> 161 <field ref="PPPHY" /> 162 <field ref="PPPHY2" /> 163 <field ref="PPNEWN" /> 164 <field ref="PPNEWD" /> 165 <field ref="PBSi" /> 166 <field ref="PFeN" /> 167 <field ref="PFeD" /> 168 <field ref="xfracal" /> 169 <field ref="PCAL" /> 170 <field ref="DCAL" /> 171 <field ref="GRAZ1" /> 172 <field ref="GRAZ2" /> 173 <field ref="EPC100" /> 174 <field ref="EPFE100" /> 175 <field ref="EPSI100" /> 176 <field ref="EPCAL100" /> 177 <field ref="Cflx" /> 178 <field ref="Oflx" /> 179 <field ref="Kg" /> 180 <field ref="Dpco2" /> 181 <field ref="Dpo2" /> 182 <field ref="Heup" /> 183 <field ref="Irondep" /> 184 <field ref="Ironsed" /> 185 <field ref="Ironice" /> 186 <field ref="Nfix" /> 187 <field ref="MuN" /> 188 <field ref="MuD" /> 189 <field ref="LNnut" /> 190 <field ref="LDnut" /> 191 <field ref="LNFe" /> 192 <field ref="LDFe" /> 193 <field ref="LNlight" /> 194 <field ref="LDlight" /> 195 <field ref="pdust" /> 196 <field ref="Fe2" /> 197 <field ref="Fe3" /> 198 <field ref="FeL1" /> 199 <field ref="FeL2" /> 200 <field ref="FeP" /> 201 <field ref="TL1" /> 202 <field ref="TL2" /> 203 <field ref="Sdenit" /> 204 <field ref="Totlig" /> 205 </file> 206 </group> 207 208 <group id="2m" output_freq="-2" output_level="10" enabled=".TRUE."> <!-- real 2m files --> 209 </group> 210 211 <group id="3m" output_freq="-3" output_level="10" enabled=".TRUE."> <!-- real 3m files --> 212 </group> 213 214 <group id="4m" output_freq="-4" output_level="10" enabled=".TRUE."> <!-- real 4m files --> 215 </group> 216 217 <group id="6m" output_freq="-6" output_level="10" enabled=".TRUE."> <!-- real 6m files --> 218 </group> 219 220 <group id="1y" output_freq="-12" output_level="10" enabled=".TRUE."> <!-- real yearly files --> 221 </group> 222 223 <group id="2y" output_freq="-24" output_level="10" enabled=".TRUE."> <!-- real 2y files --> 224 </group> 225 226 <group id="5y" output_freq="-60" output_level="10" enabled=".TRUE."> <!-- real 5y files --> 227 </group> 228 229 <group id="10y" output_freq="-120" output_level="10" enabled=".TRUE."> <!-- real 10y files --> 230 </group> 48 </file_definition> 231 49 232 </file_definition>233 234 50 <!-- 235 51 ============================================================================================================ 236 = grid definition = 237 = DO NOT CHANGE = 52 = grid definition = = DO NOT CHANGE = 238 53 ============================================================================================================ 239 54 --> 55 56 <axis_definition> 57 <axis id="deptht" long_name="Vertical T levels" unit="m" /><!-- positive=".FALSE." --> 58 <axis id="depthu" long_name="Vertical U levels" unit="m" /><!-- positive=".FALSE." --> 59 <axis id="depthv" long_name="Vertical V levels" unit="m" /><!-- positive=".FALSE." --> 60 <axis id="depthw" long_name="Vertical W levels" unit="m" /><!-- positive=".FALSE." --> 61 <axis id="nfloat" long_name="Float number" unit="-" /> 62 </axis_definition> 63 64 <domain_definition src="./domain_def.xml"/> 65 66 <grid_definition /> 67 68 </context> 69 240 70 241 <axis_definition> 242 <axis id="deptht" description="Vertical T levels" unit="m" positive=".false." /> 243 <axis id="depthu" description="Vertical U levels" unit="m" positive=".false." /> 244 <axis id="depthv" description="Vertical V levels" unit="m" positive=".false." /> 245 <axis id="depthw" description="Vertical W levels" unit="m" positive=".false." /> 246 <axis id="none" description="axe non defini" unit="none" size="1" /> 247 </axis_definition> 71 <context id="xios"> 248 72 249 <grid_definition> 250 <grid id="grid_T" description="grid T" /> 251 <grid id="grid_U" description="grid U" /> 252 <grid id="grid_V" description="grid V" /> 253 <grid id="grid_W" description="grid W" /> 254 <grid id="scalarpoint" description="scalar" > 255 <zoom id="1point" ibegin="1" jbegin="1" ni="1" nj="1" /> 256 </grid> 257 </grid_definition> 258 259 </context> 260 73 <variable_definition> 74 75 <!-- 76 We must have buffer_size > jpi*jpj*jpk*8 (with jpi and jpj the subdomain size) 77 --> 78 <variable id="buffer_size" type="integer">10000000</variable> 79 <variable id="buffer_server_factor_size" type="integer">2</variable> 80 <variable id="info_level" type="integer">0</variable> 81 <variable id="using_server" type="boolean">true</variable> 82 <variable id="using_oasis" type="boolean">false</variable> 83 <variable id="oasis_codes_id" type="string" >oceanx</variable> 84 85 </variable_definition> 86 87 </context> 88 261 89 </simulation> -
branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/cpp_ORCA2_OFF_PISCES.fcm
r3680 r3695 1 bld::tool::fppkeys key_trabbl key_orca_r2 key_ldfslp key_traldf_c2d key_traldf_eiv key_top key_offline key_pisces key_iomput 1 bld::tool::fppkeys key_trabbl key_orca_r2 key_ldfslp key_traldf_c2d key_traldf_eiv key_top key_offline key_pisces key_iomput key_mpp_mpi
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